Query psy5184
Match_columns 209
No_of_seqs 221 out of 718
Neff 5.8
Searched_HMMs 46136
Date Fri Aug 16 19:30:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5184.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5184hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00156 histone H2AX; Provisi 100.0 1.3E-49 2.8E-54 317.2 10.3 124 22-209 13-139 (139)
2 PTZ00252 histone H2A; Provisio 100.0 2.8E-47 6E-52 301.7 9.3 111 27-199 13-124 (134)
3 PLN00153 histone H2A; Provisio 100.0 1.9E-45 4.1E-50 290.6 10.0 112 25-136 11-122 (129)
4 PLN00157 histone H2A; Provisio 100.0 9E-45 1.9E-49 287.7 10.3 113 24-136 12-124 (132)
5 PTZ00017 histone H2A; Provisio 100.0 1E-44 2.2E-49 288.3 10.2 112 25-136 14-125 (134)
6 PLN00154 histone H2A; Provisio 100.0 1.3E-44 2.9E-49 287.3 10.6 125 10-135 7-135 (136)
7 KOG1756|consensus 100.0 3.6E-43 7.8E-48 274.9 9.5 112 25-136 14-125 (131)
8 smart00414 H2A Histone 2A. 100.0 1.1E-42 2.4E-47 268.0 9.0 105 30-134 1-105 (106)
9 cd00074 H2A Histone 2A; H2A is 100.0 1.3E-41 2.9E-46 265.4 9.7 111 23-133 5-115 (115)
10 COG5262 HTA1 Histone H2A [Chro 100.0 2.4E-41 5.2E-46 261.4 8.9 111 26-136 14-124 (132)
11 KOG1757|consensus 100.0 2.8E-38 6.1E-43 242.8 4.7 111 25-136 17-128 (131)
12 PLN00153 histone H2A; Provisio 100.0 3.2E-34 6.9E-39 226.7 1.0 109 87-201 13-123 (129)
13 PLN00157 histone H2A; Provisio 100.0 1.7E-33 3.8E-38 223.3 1.7 109 87-201 15-125 (132)
14 PTZ00017 histone H2A; Provisio 100.0 3.2E-33 7E-38 222.4 1.1 109 87-201 16-126 (134)
15 PLN00154 histone H2A; Provisio 100.0 4.1E-33 9E-38 221.6 0.2 106 87-199 27-135 (136)
16 KOG1756|consensus 100.0 6.6E-33 1.4E-37 217.2 0.4 108 88-201 17-126 (131)
17 smart00414 H2A Histone 2A. 100.0 5.4E-32 1.2E-36 208.6 0.5 103 90-198 1-105 (106)
18 COG5262 HTA1 Histone H2A [Chro 100.0 6.7E-31 1.5E-35 203.4 0.6 114 89-209 17-132 (132)
19 cd00074 H2A Histone 2A; H2A is 100.0 4.2E-30 9E-35 200.7 -0.4 104 88-197 10-115 (115)
20 KOG1757|consensus 99.9 5.7E-29 1.2E-33 191.4 -2.3 106 88-200 20-128 (131)
21 PLN00155 histone H2A; Provisio 99.8 7.6E-22 1.7E-26 136.0 4.4 47 26-72 12-58 (58)
22 PLN00156 histone H2AX; Provisi 99.4 9.9E-14 2.1E-18 111.3 3.4 70 60-136 58-127 (139)
23 PTZ00252 histone H2A; Provisio 99.4 1.4E-13 3.1E-18 109.6 3.3 69 61-134 55-123 (134)
24 PF00125 Histone: Core histone 99.4 4.7E-13 1E-17 95.9 3.9 73 32-104 2-75 (75)
25 COG5247 BUR6 Class 2 transcrip 99.3 9.7E-12 2.1E-16 94.7 5.7 80 34-114 19-98 (113)
26 KOG1659|consensus 99.0 6.6E-10 1.4E-14 94.6 4.7 77 36-113 11-87 (224)
27 PF00808 CBFD_NFYB_HMF: Histon 98.5 1.8E-07 3.9E-12 65.5 5.1 64 38-101 2-65 (65)
28 PLN00035 histone H4; Provision 98.0 1E-05 2.2E-10 62.3 4.7 77 24-103 17-93 (103)
29 PTZ00015 histone H4; Provision 97.8 4.5E-05 9.8E-10 58.7 5.2 77 24-103 18-94 (102)
30 smart00803 TAF TATA box bindin 97.5 0.00027 5.9E-09 50.0 5.2 63 38-101 2-64 (65)
31 COG2036 HHT1 Histones H3 and H 97.3 0.00035 7.6E-09 52.7 4.2 68 35-103 16-83 (91)
32 cd00076 H4 Histone H4, one of 97.2 0.00048 1E-08 51.4 4.4 72 29-103 6-77 (85)
33 KOG1657|consensus 97.2 0.00031 6.7E-09 61.4 3.3 78 34-111 70-147 (236)
34 PLN00155 histone H2A; Provisio 97.2 7.8E-05 1.7E-09 51.7 -0.4 43 88-133 14-58 (58)
35 COG5208 HAP5 CCAAT-binding fac 97.1 0.0008 1.7E-08 58.2 5.4 75 37-111 108-182 (286)
36 PF00125 Histone: Core histone 97.1 7.1E-06 1.5E-10 58.5 -6.6 47 119-168 29-75 (75)
37 smart00417 H4 Histone H4. 96.7 0.0023 5E-08 46.5 4.2 68 30-100 7-74 (74)
38 cd07981 TAF12 TATA Binding Pro 96.6 0.0055 1.2E-07 44.0 5.5 65 39-103 2-66 (72)
39 cd08048 TAF11 TATA Binding Pro 95.7 0.03 6.5E-07 41.7 5.6 64 39-103 17-83 (85)
40 PTZ00463 histone H2B; Provisio 94.9 0.086 1.9E-06 41.5 6.1 61 43-103 33-93 (117)
41 PLN00158 histone H2B; Provisio 94.5 0.13 2.9E-06 40.4 6.2 62 42-103 31-92 (116)
42 KOG3219|consensus 94.4 0.044 9.6E-07 46.6 3.6 66 37-103 111-177 (195)
43 COG5247 BUR6 Class 2 transcrip 94.4 0.0071 1.5E-07 46.5 -1.1 77 88-175 20-96 (113)
44 PF04719 TAFII28: hTAFII28-lik 93.9 0.075 1.6E-06 40.1 3.6 64 39-103 24-89 (90)
45 cd07979 TAF9 TATA Binding Prot 93.6 0.17 3.7E-06 39.6 5.3 60 43-103 6-65 (117)
46 smart00427 H2B Histone H2B. 93.1 0.26 5.7E-06 37.1 5.4 60 43-102 6-65 (89)
47 PF02969 TAF: TATA box binding 92.4 0.36 7.9E-06 34.3 5.1 64 38-102 3-66 (66)
48 smart00428 H3 Histone H3. 90.9 0.42 9.1E-06 37.0 4.4 68 35-102 26-99 (105)
49 cd08050 TAF6 TATA Binding Prot 90.8 0.35 7.6E-06 44.3 4.6 58 44-102 5-62 (343)
50 KOG1659|consensus 90.2 0.073 1.6E-06 46.0 -0.4 78 88-177 10-87 (224)
51 smart00576 BTP Bromodomain tra 87.9 1.5 3.4E-05 31.4 5.3 59 44-103 12-70 (77)
52 PF09415 CENP-X: CENP-S associ 87.1 2.2 4.8E-05 30.7 5.6 61 40-100 1-64 (72)
53 PF03847 TFIID_20kDa: Transcri 86.3 1.4 3.1E-05 31.3 4.2 61 43-103 4-64 (68)
54 PF15630 CENP-S: Kinetochore c 84.3 2.5 5.5E-05 30.7 4.8 48 60-107 26-76 (76)
55 CHL00095 clpC Clp protease ATP 84.2 0.19 4.2E-06 50.9 -1.5 103 74-177 10-126 (821)
56 TIGR02639 ClpA ATP-dependent C 82.4 0.26 5.6E-06 49.3 -1.4 103 74-177 6-124 (731)
57 PF02861 Clp_N: Clp amino term 79.5 0.33 7.1E-06 31.4 -1.2 33 145-177 2-36 (53)
58 KOG1744|consensus 79.5 10 0.00022 30.4 7.0 69 31-102 33-101 (127)
59 PF04604 L_biotic_typeA: Type- 78.4 1.3 2.9E-05 30.0 1.4 24 166-192 15-38 (51)
60 PRK11034 clpA ATP-dependent Cl 77.7 0.48 1E-05 47.9 -1.2 98 73-170 6-117 (758)
61 KOG0869|consensus 77.3 5.8 0.00013 33.0 5.2 66 38-103 32-98 (168)
62 KOG0871|consensus 74.6 8.5 0.00018 31.7 5.4 69 34-103 8-78 (156)
63 cd07978 TAF13 The TATA Binding 73.1 14 0.0003 27.8 5.9 39 67-106 28-69 (92)
64 PLN00121 histone H3; Provision 72.9 18 0.00039 29.3 6.9 67 36-102 60-130 (136)
65 PF02269 TFIID-18kDa: Transcri 71.4 4.3 9.3E-05 30.4 2.8 43 65-107 25-70 (93)
66 TIGR03346 chaperone_ClpB ATP-d 71.1 0.81 1.8E-05 46.7 -1.5 103 73-176 5-122 (852)
67 KOG3467|consensus 69.9 8.6 0.00019 29.0 4.1 77 24-103 17-93 (103)
68 PTZ00018 histone H3; Provision 69.6 23 0.00051 28.6 6.8 66 36-101 60-129 (136)
69 PF02291 TFIID-31kDa: Transcri 65.1 22 0.00048 28.4 5.9 58 42-103 16-76 (129)
70 KOG1142|consensus 58.0 11 0.00024 33.5 3.3 66 39-104 155-220 (258)
71 KOG0870|consensus 55.2 29 0.00063 29.1 5.1 67 36-103 8-77 (172)
72 PF15511 CENP-T: Centromere ki 55.1 13 0.00029 35.0 3.5 72 25-96 338-414 (414)
73 PRK10865 protein disaggregatio 54.5 2.9 6.3E-05 42.9 -1.1 103 73-176 10-127 (857)
74 PF12096 DUF3572: Protein of u 53.2 12 0.00026 28.1 2.3 33 42-74 22-57 (88)
75 PLN00160 histone H3; Provision 50.5 22 0.00047 27.2 3.4 68 35-102 18-90 (97)
76 KOG1658|consensus 49.8 13 0.00029 30.7 2.3 71 37-108 58-129 (162)
77 PF07524 Bromo_TP: Bromodomain 47.8 57 0.0012 22.9 5.1 49 55-103 22-70 (77)
78 TIGR03345 VI_ClpV1 type VI sec 46.5 4.1 8.8E-05 41.8 -1.5 97 73-170 5-114 (852)
79 PLN00161 histone H3; Provision 46.0 34 0.00074 27.7 4.0 68 35-102 52-124 (135)
80 PF04823 Herpes_UL49_2: Herpes 44.8 11 0.00023 28.8 0.9 15 166-180 67-81 (96)
81 KOG1745|consensus 44.5 18 0.00039 29.4 2.2 63 40-102 68-131 (137)
82 smart00803 TAF TATA box bindin 39.9 3.3 7.2E-05 29.1 -2.4 38 126-166 28-65 (65)
83 COG5251 TAF40 Transcription in 39.4 44 0.00094 28.3 3.8 64 39-103 116-180 (199)
84 COG0542 clpA ATP-binding subun 39.3 15 0.00033 37.5 1.3 96 73-170 6-111 (786)
85 KOG3901|consensus 39.1 47 0.001 25.8 3.7 35 68-106 40-74 (109)
86 PF02269 TFIID-18kDa: Transcri 28.7 18 0.00039 27.0 -0.1 29 142-170 41-69 (93)
87 PLN00158 histone H2B; Provisio 28.3 5.7 0.00012 31.3 -2.9 23 144-166 69-91 (116)
88 PHA03381 tegument protein VP22 26.5 32 0.00069 30.6 1.0 15 166-180 224-238 (290)
89 COG3636 Predicted transcriptio 25.8 82 0.0018 24.2 3.0 53 59-111 21-82 (100)
90 PRK11034 clpA ATP-dependent Cl 24.5 19 0.0004 36.7 -0.9 39 140-178 9-47 (758)
91 CHL00095 clpC Clp protease ATP 22.4 16 0.00035 37.2 -1.8 34 137-170 9-42 (821)
92 KOG3334|consensus 21.5 3.4E+02 0.0073 22.3 6.0 56 44-103 19-77 (148)
93 TIGR02639 ClpA ATP-dependent C 21.2 26 0.00056 35.2 -0.6 37 140-176 8-44 (731)
94 PHA02669 hypothetical protein; 21.1 89 0.0019 26.4 2.6 37 61-100 12-48 (210)
95 COG5150 Class 2 transcription 20.9 1.4E+02 0.0031 24.1 3.6 67 36-103 9-77 (148)
96 PLN00163 histone H4; Provision 20.3 50 0.0011 23.1 0.8 34 24-60 17-50 (59)
97 KOG1744|consensus 20.3 26 0.00056 28.1 -0.7 24 143-166 78-101 (127)
No 1
>PLN00156 histone H2AX; Provisional
Probab=100.00 E-value=1.3e-49 Score=317.24 Aligned_cols=124 Identities=58% Similarity=0.873 Sum_probs=111.3
Q ss_pred CccccccCCCCcccccccChhhHHHHHhhCCccccccCCchhHHHHHHHHHHHHHHHHHhhhhcccCCcccchhhhHHHh
Q psy5184 22 LKSNAARRTRSAKANIVFPVSRIQRYLKRGNYSERIGIGASVFLAATLEYLVAEILELAGNAASDNKKSRITPRYLMLAI 101 (209)
Q Consensus 22 ~k~~~~~~s~s~RagL~FPV~ri~r~Lk~~~~~~ris~~A~VyLaAvLEYL~aEILelAgn~A~~~kk~rItP~hLq~AV 101 (209)
++++++..|||+||||||||+||||||++++|+.||+++||||||||||||++||||||+|+
T Consensus 13 ~~~~~k~~srS~rAgL~FPVgRi~R~Lk~g~ya~RVga~ApVYLAAVLEYLtaEVLELAgNa------------------ 74 (139)
T PLN00156 13 KPKATKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNA------------------ 74 (139)
T ss_pred cccccCCcCcccccCcccchHHHHHHHhcCChhhccCCccHHHHHHHHHHHHHHHHHHHHHH------------------
Confidence 33567889999999999999999999999999999999999999999999999999999997
Q ss_pred hccHHHHhhhcCceecCCCCCCccccccccccccccccccccccccccccccccccccchhhhccChHHHhhhhcccccc
Q psy5184 102 KNDEELAKLLCGVTIAQGGVLPHIEPVLLTKKTNEYYIQQEYDIFTASDNKKSRITPRYLMLAIKNDEELAKLLCGVTIA 181 (209)
Q Consensus 102 ~nD~EL~~ll~~~~ia~ggv~P~i~~~lL~~~~~~~~~~lelA~~~a~~~~k~rItPrhl~lAi~ndeeL~~L~~~~tia 181 (209)
|+|++++|||||||+|||+||+||++||++|||+
T Consensus 75 ----------------------------------------------a~d~kk~RItPrHi~lAIrnDeEL~~Ll~~vTIa 108 (139)
T PLN00156 75 ----------------------------------------------ARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIA 108 (139)
T ss_pred ----------------------------------------------HHHcCCCcCcHHHHHhhccCcHHHHHHHCCCccC
Confidence 3456666999999999999999999999999999
Q ss_pred CccccCCCCccccccccCCCCC---CCCCCC
Q psy5184 182 QGGVLPHIEPVLLTKKTNGKNT---SGSQEY 209 (209)
Q Consensus 182 ~ggv~p~i~~~l~~kk~~~~~~---~~~~~~ 209 (209)
+|||+|+||++|+|||++++.. .+||+|
T Consensus 109 ~GGV~P~i~~~l~~kk~~~~~~~~~~~~~~~ 139 (139)
T PLN00156 109 AGGVLPNIHQTLLPKKVGKGKGDIGSASQEF 139 (139)
T ss_pred CCccCCCccHhhccccccccccccccccCCC
Confidence 9999999999999999754422 236665
No 2
>PTZ00252 histone H2A; Provisional
Probab=100.00 E-value=2.8e-47 Score=301.71 Aligned_cols=111 Identities=44% Similarity=0.779 Sum_probs=102.0
Q ss_pred ccCC-CCcccccccChhhHHHHHhhCCccccccCCchhHHHHHHHHHHHHHHHHHhhhhcccCCcccchhhhHHHhhccH
Q psy5184 27 ARRT-RSAKANIVFPVSRIQRYLKRGNYSERIGIGASVFLAATLEYLVAEILELAGNAASDNKKSRITPRYLMLAIKNDE 105 (209)
Q Consensus 27 ~~~s-~s~RagL~FPV~ri~r~Lk~~~~~~ris~~A~VyLaAvLEYL~aEILelAgn~A~~~kk~rItP~hLq~AV~nD~ 105 (209)
+..+ ||+|||||||||||||||++++|+.||+++||||||||||||++||||||||+|++
T Consensus 13 ~~~~~rS~rAGL~FPVgRi~R~Lr~g~ya~RIga~ApVYLAAVLEYLtaEVLELAgnaa~d------------------- 73 (134)
T PTZ00252 13 KSGSGRSAKAGLIFPVGRVGSLLRRGQYARRIGASGAVYMAAVLEYLTAELLELSVKAAAQ------------------- 73 (134)
T ss_pred ccccccccccCccCchHHHHHHHHcCCcccccCCccHHHHHHHHHHHHHHHHHHHHHHHHh-------------------
Confidence 3445 99999999999999999999999999999999999999999999999999998811
Q ss_pred HHHhhhcCceecCCCCCCccccccccccccccccccccccccccccccccccccchhhhccChHHHhhhhccccccCccc
Q psy5184 106 ELAKLLCGVTIAQGGVLPHIEPVLLTKKTNEYYIQQEYDIFTASDNKKSRITPRYLMLAIKNDEELAKLLCGVTIAQGGV 185 (209)
Q Consensus 106 EL~~ll~~~~ia~ggv~P~i~~~lL~~~~~~~~~~lelA~~~a~~~~k~rItPrhl~lAi~ndeeL~~L~~~~tia~ggv 185 (209)
+++++.|||||||+|||+|||||++||++|||+||||
T Consensus 74 -------------------------------------------~~~kk~RItPrHi~lAIrNDeEL~~Ll~~vTIa~GGV 110 (134)
T PTZ00252 74 -------------------------------------------QAKKPKRLTPRTVTLAVRHDDDLGSLLKNVTLSRGGV 110 (134)
T ss_pred -------------------------------------------ccCCcccccHHHHHhhccChHHHHHHHcCCccCCCcc
Confidence 2356779999999999999999999999999999999
Q ss_pred cCCCCccccccccC
Q psy5184 186 LPHIEPVLLTKKTN 199 (209)
Q Consensus 186 ~p~i~~~l~~kk~~ 199 (209)
+|+||++|++|++.
T Consensus 111 lP~i~~~l~~k~~~ 124 (134)
T PTZ00252 111 MPSLNKALAKKHKS 124 (134)
T ss_pred CCCccHhhcccccc
Confidence 99999999999443
No 3
>PLN00153 histone H2A; Provisional
Probab=100.00 E-value=1.9e-45 Score=290.60 Aligned_cols=112 Identities=67% Similarity=0.976 Sum_probs=108.5
Q ss_pred ccccCCCCcccccccChhhHHHHHhhCCccccccCCchhHHHHHHHHHHHHHHHHHhhhhcccCCcccchhhhHHHhhcc
Q psy5184 25 NAARRTRSAKANIVFPVSRIQRYLKRGNYSERIGIGASVFLAATLEYLVAEILELAGNAASDNKKSRITPRYLMLAIKND 104 (209)
Q Consensus 25 ~~~~~s~s~RagL~FPV~ri~r~Lk~~~~~~ris~~A~VyLaAvLEYL~aEILelAgn~A~~~kk~rItP~hLq~AV~nD 104 (209)
+++..|||+||||||||+||||||++++|+.||+++||||||||||||++||||||+|+|++++++||+|+||++||+||
T Consensus 11 ~~k~~srS~ragL~FpVgRi~R~Lr~g~~a~Rvga~A~VYLAAVLEYLtaEVLELAgnaa~d~kk~RItPrHi~lAI~nD 90 (129)
T PLN00153 11 GKKAVSRSAKAGLQFPVGRIARYLKKGKYAERIGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKNRIVPRHIQLAIRND 90 (129)
T ss_pred ccCccCcccccCcccchHHHHHHHhcCchhhccCCCchHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChHHHHhhccCc
Confidence 34778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcCceecCCCCCCccccccccccccc
Q psy5184 105 EELAKLLCGVTIAQGGVLPHIEPVLLTKKTNE 136 (209)
Q Consensus 105 ~EL~~ll~~~~ia~ggv~P~i~~~lL~~~~~~ 136 (209)
+||+.||+++||++|||+|+||+++|++++..
T Consensus 91 eEL~~Ll~~vTIa~GGV~P~i~~~l~~kk~~~ 122 (129)
T PLN00153 91 EELGKLLGEVTIASGGVLPNIHAVLLPKKTKG 122 (129)
T ss_pred HHHHHHHCCCccCCCccCCCcchhhcCcccCC
Confidence 99999999999999999999999999998755
No 4
>PLN00157 histone H2A; Provisional
Probab=100.00 E-value=9e-45 Score=287.73 Aligned_cols=113 Identities=65% Similarity=0.976 Sum_probs=108.9
Q ss_pred cccccCCCCcccccccChhhHHHHHhhCCccccccCCchhHHHHHHHHHHHHHHHHHhhhhcccCCcccchhhhHHHhhc
Q psy5184 24 SNAARRTRSAKANIVFPVSRIQRYLKRGNYSERIGIGASVFLAATLEYLVAEILELAGNAASDNKKSRITPRYLMLAIKN 103 (209)
Q Consensus 24 ~~~~~~s~s~RagL~FPV~ri~r~Lk~~~~~~ris~~A~VyLaAvLEYL~aEILelAgn~A~~~kk~rItP~hLq~AV~n 103 (209)
++++..|+|+||||||||+||||||++++|+.||+++||||||||||||++||||||+|+|++++++||+|+||++||+|
T Consensus 12 ~~~k~~srS~ragL~FPVgRi~R~Lk~g~~a~RIg~~A~VYLAAVLEYLtaEVLELAgnaa~d~kk~RItPrHi~lAI~n 91 (132)
T PLN00157 12 GGKKATSRSAKAGLQFPVGRIARYLKAGKYATRVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKSRIVPRHIQLAVRN 91 (132)
T ss_pred cCcCCcCcccccCcccchHHHHHHHhcCchhhhcCCCcHhHHHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHhhcccC
Confidence 44578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHhhhcCceecCCCCCCccccccccccccc
Q psy5184 104 DEELAKLLCGVTIAQGGVLPHIEPVLLTKKTNE 136 (209)
Q Consensus 104 D~EL~~ll~~~~ia~ggv~P~i~~~lL~~~~~~ 136 (209)
|+||+.||+++||++|||+|+||+++|++++..
T Consensus 92 DeEL~~Ll~~vtIa~GGV~P~i~~~ll~kk~~~ 124 (132)
T PLN00157 92 DEELSKLLGGVTIAAGGVLPNIHSVLLPKKSGK 124 (132)
T ss_pred cHHHHHHHcCceecCCccCCCcchhhcCCCCCC
Confidence 999999999999999999999999999998754
No 5
>PTZ00017 histone H2A; Provisional
Probab=100.00 E-value=1e-44 Score=288.30 Aligned_cols=112 Identities=65% Similarity=0.994 Sum_probs=108.5
Q ss_pred ccccCCCCcccccccChhhHHHHHhhCCccccccCCchhHHHHHHHHHHHHHHHHHhhhhcccCCcccchhhhHHHhhcc
Q psy5184 25 NAARRTRSAKANIVFPVSRIQRYLKRGNYSERIGIGASVFLAATLEYLVAEILELAGNAASDNKKSRITPRYLMLAIKND 104 (209)
Q Consensus 25 ~~~~~s~s~RagL~FPV~ri~r~Lk~~~~~~ris~~A~VyLaAvLEYL~aEILelAgn~A~~~kk~rItP~hLq~AV~nD 104 (209)
+++..|+|+||||||||+||||||++++|+.||+++|||||+||||||++||||||+|+|++++++||+|+||++||+||
T Consensus 14 ~~k~~srS~ragL~FPVgRi~R~Lk~g~~a~RV~a~A~VYLAAVLEYLtaEILELAgNaa~d~kk~RItPrHi~lAI~nD 93 (134)
T PTZ00017 14 KKKPVSRSAKAGLQFPVGRVHRYLKKGRYAKRVGAGAPVYLAAVLEYLTAEVLELAGNAAKDNKKKRITPRHIQLAIRND 93 (134)
T ss_pred CcCcccccccCCcccchHHHHHHHhccchhccccccchhhhHHHHHHHHHHHHHHHHHHHHhcCCCeecHHHHHhhccCc
Confidence 34788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcCceecCCCCCCccccccccccccc
Q psy5184 105 EELAKLLCGVTIAQGGVLPHIEPVLLTKKTNE 136 (209)
Q Consensus 105 ~EL~~ll~~~~ia~ggv~P~i~~~lL~~~~~~ 136 (209)
+||+.||+++||++|||+|+||+++|++++..
T Consensus 94 eEL~~Ll~~vtIa~GGV~P~i~~~l~~k~~~~ 125 (134)
T PTZ00017 94 EELNKLLAGVTIASGGVLPNIHKVLLPKKSKP 125 (134)
T ss_pred HHHHHHHcCCcccCCccCCCccHhhccCCCCc
Confidence 99999999999999999999999999998765
No 6
>PLN00154 histone H2A; Provisional
Probab=100.00 E-value=1.3e-44 Score=287.29 Aligned_cols=125 Identities=50% Similarity=0.675 Sum_probs=111.1
Q ss_pred cccCCCCc---cccCCccccccCCCCcccccccChhhHHHHHhhCC-ccccccCCchhHHHHHHHHHHHHHHHHHhhhhc
Q psy5184 10 KTASGGKD---LGSKLKSNAARRTRSAKANIVFPVSRIQRYLKRGN-YSERIGIGASVFLAATLEYLVAEILELAGNAAS 85 (209)
Q Consensus 10 ~~~~~~~~---~~~~~k~~~~~~s~s~RagL~FPV~ri~r~Lk~~~-~~~ris~~A~VyLaAvLEYL~aEILelAgn~A~ 85 (209)
+.++||+. ++.+.+.+++..|||+||||||||+||||+|++++ |.+||+++|||||+||||||++||||||||+|+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~k~~srS~rAgL~FPVgRi~r~Lk~g~~~~~RVga~ApVYLAAVLEYLtAEVLELAGNaA~ 86 (136)
T PLN00154 7 KGLLAAKTTAAAAKKDKDKKKPTSRSSRAGLQFPVGRIHRQLKQRVSAHGRVGATAAVYTAAILEYLTAEVLELAGNASK 86 (136)
T ss_pred cccccCCcCCcccccccCCcCCcCcccccCccCchHHHHHHHHhhhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555542 22233445688999999999999999999999997 468999999999999999999999999999999
Q ss_pred ccCCcccchhhhHHHhhccHHHHhhhcCceecCCCCCCcccccccccccc
Q psy5184 86 DNKKSRITPRYLMLAIKNDEELAKLLCGVTIAQGGVLPHIEPVLLTKKTN 135 (209)
Q Consensus 86 ~~kk~rItP~hLq~AV~nD~EL~~ll~~~~ia~ggv~P~i~~~lL~~~~~ 135 (209)
+++++||+|+||++||+||+||++||+ +||++|||+|+||++++++++.
T Consensus 87 d~kk~RItPrHi~lAIrnDeEL~~Ll~-~TIa~GGVlP~i~~~l~~k~~~ 135 (136)
T PLN00154 87 DLKVKRITPRHLQLAIRGDEELDTLIK-GTIAGGGVIPHIHKSLINKSTK 135 (136)
T ss_pred hhCCceecHHHhhhhccCcHHHHHHhc-CCccCCccCCCcchhhcccccC
Confidence 999999999999999999999999997 7999999999999999998754
No 7
>KOG1756|consensus
Probab=100.00 E-value=3.6e-43 Score=274.93 Aligned_cols=112 Identities=65% Similarity=0.989 Sum_probs=108.7
Q ss_pred ccccCCCCcccccccChhhHHHHHhhCCccccccCCchhHHHHHHHHHHHHHHHHHhhhhcccCCcccchhhhHHHhhcc
Q psy5184 25 NAARRTRSAKANIVFPVSRIQRYLKRGNYSERIGIGASVFLAATLEYLVAEILELAGNAASDNKKSRITPRYLMLAIKND 104 (209)
Q Consensus 25 ~~~~~s~s~RagL~FPV~ri~r~Lk~~~~~~ris~~A~VyLaAvLEYL~aEILelAgn~A~~~kk~rItP~hLq~AV~nD 104 (209)
+++..|+|.|+|||||||||+|+|++++|.+||+.+|||||+||||||++||||+|+|+|++++++||+|+||++||+||
T Consensus 14 ~~~~~srs~~agl~fPvgri~r~Lr~~~~~~ri~~gapV~laavLeYL~Aeile~agnaardnkk~ri~PrH~~lAI~ND 93 (131)
T KOG1756|consen 14 AKAKSSRSSRAGLQFPVGRIHRLLRKGRYAQRVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRITPRHLQLAIRND 93 (131)
T ss_pred hhhhcchhhhcccccCHHHHHHHHHccchhhhccCCChHHHHHHHHHHHHHHHHHhHHHhhhcCccccChHHHHHHHhCc
Confidence 46778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcCceecCCCCCCccccccccccccc
Q psy5184 105 EELAKLLCGVTIAQGGVLPHIEPVLLTKKTNE 136 (209)
Q Consensus 105 ~EL~~ll~~~~ia~ggv~P~i~~~lL~~~~~~ 136 (209)
+||+.+|.++||++|||+|+|++.+|++++..
T Consensus 94 eEL~~lL~~vtIa~GGvlPnI~~~lLpKk~~~ 125 (131)
T KOG1756|consen 94 EELNKLLGKVTIAQGGVLPNIQAILLPKKTGK 125 (131)
T ss_pred HHHHHHhccceeccCCcccccchhhccccccc
Confidence 99999999999999999999999999998765
No 8
>smart00414 H2A Histone 2A.
Probab=100.00 E-value=1.1e-42 Score=267.97 Aligned_cols=105 Identities=70% Similarity=1.047 Sum_probs=103.0
Q ss_pred CCCcccccccChhhHHHHHhhCCccccccCCchhHHHHHHHHHHHHHHHHHhhhhcccCCcccchhhhHHHhhccHHHHh
Q psy5184 30 TRSAKANIVFPVSRIQRYLKRGNYSERIGIGASVFLAATLEYLVAEILELAGNAASDNKKSRITPRYLMLAIKNDEELAK 109 (209)
Q Consensus 30 s~s~RagL~FPV~ri~r~Lk~~~~~~ris~~A~VyLaAvLEYL~aEILelAgn~A~~~kk~rItP~hLq~AV~nD~EL~~ 109 (209)
|||+|||||||||||||||++++|++||+++|||||+||||||++||||||+|+|++++++||+|+||++||+||+|||+
T Consensus 1 srS~ragL~fPVgRi~r~Lk~~~~~~Rv~~~A~VyLaAvLEYLtaEILeLagn~a~~~k~~rItp~hi~lAi~nD~EL~~ 80 (106)
T smart00414 1 SRSARAGLQFPVGRIHRLLRKGTYAKRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKRRITPRHLQLAIRNDEELNK 80 (106)
T ss_pred CccccCCccCchHHHHHHHHcCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHhhhccCCHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCceecCCCCCCccccccccccc
Q psy5184 110 LLCGVTIAQGGVLPHIEPVLLTKKT 134 (209)
Q Consensus 110 ll~~~~ia~ggv~P~i~~~lL~~~~ 134 (209)
+|+++||++|||+|+||++++++++
T Consensus 81 L~~~vti~~ggv~p~i~~~l~~~~~ 105 (106)
T smart00414 81 LLKGVTIAQGGVLPNIHKVLLPKKT 105 (106)
T ss_pred HHcCcccCCCccCCCcchhhcccCC
Confidence 9999999999999999999999875
No 9
>cd00074 H2A Histone 2A; H2A is a subunit of the nucleosome. The nucleosome is an octamer containing two H2A, H2B, H3, and H4 subunits. The H2A subunit performs essential roles in maintaining structural integrity of the nucleosome, chromatin condensation, and binding of specific chromatin-associated proteins.
Probab=100.00 E-value=1.3e-41 Score=265.35 Aligned_cols=111 Identities=68% Similarity=1.042 Sum_probs=106.6
Q ss_pred ccccccCCCCcccccccChhhHHHHHhhCCccccccCCchhHHHHHHHHHHHHHHHHHhhhhcccCCcccchhhhHHHhh
Q psy5184 23 KSNAARRTRSAKANIVFPVSRIQRYLKRGNYSERIGIGASVFLAATLEYLVAEILELAGNAASDNKKSRITPRYLMLAIK 102 (209)
Q Consensus 23 k~~~~~~s~s~RagL~FPV~ri~r~Lk~~~~~~ris~~A~VyLaAvLEYL~aEILelAgn~A~~~kk~rItP~hLq~AV~ 102 (209)
|.+++.+|+|+||||+|||+||+|||++++|++||+++|+|||+||||||++||||+|+|.|+++++++|+|+||++||+
T Consensus 5 k~~~~~~s~s~ragL~fPV~ri~R~Lk~~~~a~RVs~~A~VyLaAvLEYL~aEIlelA~n~ak~~k~krItp~hi~lAi~ 84 (115)
T cd00074 5 KKKSKKRSRSARAGLQFPVGRIHRYLKKGRYAERVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKKRITPRHLQLAVR 84 (115)
T ss_pred ccCcCccccccccCccCcHHHHHHHHHcCccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEcHHHHHHHHh
Confidence 45567789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHhhhcCceecCCCCCCcccccccccc
Q psy5184 103 NDEELAKLLCGVTIAQGGVLPHIEPVLLTKK 133 (209)
Q Consensus 103 nD~EL~~ll~~~~ia~ggv~P~i~~~lL~~~ 133 (209)
||+|||+||+++||++|||+|+||+++++++
T Consensus 85 nD~EL~~L~~~vtI~~ggv~p~i~~~l~~~~ 115 (115)
T cd00074 85 NDEELNKLLKGVTIASGGVLPNIHKVLLPKK 115 (115)
T ss_pred ccHHHHHHHcCCcccCCccCCCcchhhcCCC
Confidence 9999999999999999999999999999763
No 10
>COG5262 HTA1 Histone H2A [Chromatin structure and dynamics]
Probab=100.00 E-value=2.4e-41 Score=261.43 Aligned_cols=111 Identities=67% Similarity=0.984 Sum_probs=106.1
Q ss_pred cccCCCCcccccccChhhHHHHHhhCCccccccCCchhHHHHHHHHHHHHHHHHHhhhhcccCCcccchhhhHHHhhccH
Q psy5184 26 AARRTRSAKANIVFPVSRIQRYLKRGNYSERIGIGASVFLAATLEYLVAEILELAGNAASDNKKSRITPRYLMLAIKNDE 105 (209)
Q Consensus 26 ~~~~s~s~RagL~FPV~ri~r~Lk~~~~~~ris~~A~VyLaAvLEYL~aEILelAgn~A~~~kk~rItP~hLq~AV~nD~ 105 (209)
+-..|+|.++||+||||||+|+|+.++|..||+++||||++||||||++||||+|+|+|++++++||+|+|||+||+||+
T Consensus 14 r~~~s~sa~agl~fpvgrvkr~lk~~~~~~Rig~~A~Vyl~AvleYL~aEilelAgNaA~d~kkkri~PrHlqlAIrnD~ 93 (132)
T COG5262 14 RVSQSRSAKAGLIFPVGRVKRLLKKGNYRMRIGAGAPVYLAAVLEYLAAEILELAGNAARDNKKKRIIPRHLQLAIRNDE 93 (132)
T ss_pred hhccchhhhcCccccHHHHHHHHHcCccceeecCCcHHHHHHHHHHHHHHHHHHhhhhhhhcCcceechHHHHHHhcCcH
Confidence 35679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcCceecCCCCCCccccccccccccc
Q psy5184 106 ELAKLLCGVTIAQGGVLPHIEPVLLTKKTNE 136 (209)
Q Consensus 106 EL~~ll~~~~ia~ggv~P~i~~~lL~~~~~~ 136 (209)
||+.++++++|++|||+|+|++.+|++...+
T Consensus 94 EL~~l~~~~tIa~GGvlp~I~~~ll~k~skK 124 (132)
T COG5262 94 ELNKLLGDVTIAQGGVLPNINPGLLPKSSKK 124 (132)
T ss_pred HHHHHhhhheeecCCcccccChhhhhhhhcc
Confidence 9999999999999999999999999875443
No 11
>KOG1757|consensus
Probab=100.00 E-value=2.8e-38 Score=242.76 Aligned_cols=111 Identities=55% Similarity=0.776 Sum_probs=103.6
Q ss_pred ccccCCCCcccccccChhhHHHHHhhCCcc-ccccCCchhHHHHHHHHHHHHHHHHHhhhhcccCCcccchhhhHHHhhc
Q psy5184 25 NAARRTRSAKANIVFPVSRIQRYLKRGNYS-ERIGIGASVFLAATLEYLVAEILELAGNAASDNKKSRITPRYLMLAIKN 103 (209)
Q Consensus 25 ~~~~~s~s~RagL~FPV~ri~r~Lk~~~~~-~ris~~A~VyLaAvLEYL~aEILelAgn~A~~~kk~rItP~hLq~AV~n 103 (209)
+.+.+|+|+|+||||||+||||+|+....+ .||++.+.||++|+|||||+|+||||||++++.+.+||||+|||+||+.
T Consensus 17 ~~k~vs~s~raGlqFpVgRihr~LK~r~t~h~rVGataavy~aaileYLTaEVLeLAgNasKdLKvKRitprHlqLAiRG 96 (131)
T KOG1757|consen 17 KAKAVSRSARAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRG 96 (131)
T ss_pred hhhhhhHHHhcccccchHHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHHHHcccccccceeeeccchhheeeecC
Confidence 378899999999999999999999987666 5999999999999999999999999999999999999999999999999
Q ss_pred cHHHHhhhcCceecCCCCCCccccccccccccc
Q psy5184 104 DEELAKLLCGVTIAQGGVLPHIEPVLLTKKTNE 136 (209)
Q Consensus 104 D~EL~~ll~~~~ia~ggv~P~i~~~lL~~~~~~ 136 (209)
||||+.|+ ..||+.|||+|+||.+++-+....
T Consensus 97 DeELDtLI-k~TiagGgViPhihk~l~~k~~~~ 128 (131)
T KOG1757|consen 97 DEELDTLI-KATIAGGGVIPHIHKSLINKKGKK 128 (131)
T ss_pred cHHHHHHH-HHhhccCccccchHHHHhcccccc
Confidence 99999999 578999999999999998776543
No 12
>PLN00153 histone H2A; Provisional
Probab=99.98 E-value=3.2e-34 Score=226.72 Aligned_cols=109 Identities=45% Similarity=0.533 Sum_probs=103.6
Q ss_pred cCCcccchhhhHHHhhccHHHHhhhcCceecC--CCCCCccccccccccccccccccccccccccccccccccccchhhh
Q psy5184 87 NKKSRITPRYLMLAIKNDEELAKLLCGVTIAQ--GGVLPHIEPVLLTKKTNEYYIQQEYDIFTASDNKKSRITPRYLMLA 164 (209)
Q Consensus 87 ~kk~rItP~hLq~AV~nD~EL~~ll~~~~ia~--ggv~P~i~~~lL~~~~~~~~~~lelA~~~a~~~~k~rItPrhl~lA 164 (209)
..++|.+.+.|+|+|.+ ++++|+++.|+. |...|+|++++|||++++ |||||+|+|+|+++.|||||||++|
T Consensus 13 k~~srS~ragL~FpVgR---i~R~Lr~g~~a~Rvga~A~VYLAAVLEYLtaE---VLELAgnaa~d~kk~RItPrHi~lA 86 (129)
T PLN00153 13 KAVSRSAKAGLQFPVGR---IARYLKKGKYAERIGAGAPVYLAAVLEYLTAE---VLELAGNAARDNKKNRIVPRHIQLA 86 (129)
T ss_pred CccCcccccCcccchHH---HHHHHhcCchhhccCCCchHHHHHHHHHHHHH---HHHHHHHHHHhcCCCccChHHHHhh
Confidence 34678999999999999 999999999988 889999999999999999 9999999999999999999999999
Q ss_pred ccChHHHhhhhccccccCccccCCCCccccccccCCC
Q psy5184 165 IKNDEELAKLLCGVTIAQGGVLPHIEPVLLTKKTNGK 201 (209)
Q Consensus 165 i~ndeeL~~L~~~~tia~ggv~p~i~~~l~~kk~~~~ 201 (209)
|+||+||++||++|||+||||+|+||++|+|||++++
T Consensus 87 I~nDeEL~~Ll~~vTIa~GGV~P~i~~~l~~kk~~~~ 123 (129)
T PLN00153 87 IRNDEELGKLLGEVTIASGGVLPNIHAVLLPKKTKGG 123 (129)
T ss_pred ccCcHHHHHHHCCCccCCCccCCCcchhhcCcccCCC
Confidence 9999999999999999999999999999999987544
No 13
>PLN00157 histone H2A; Provisional
Probab=99.97 E-value=1.7e-33 Score=223.29 Aligned_cols=109 Identities=43% Similarity=0.533 Sum_probs=103.5
Q ss_pred cCCcccchhhhHHHhhccHHHHhhhcCceecC--CCCCCccccccccccccccccccccccccccccccccccccchhhh
Q psy5184 87 NKKSRITPRYLMLAIKNDEELAKLLCGVTIAQ--GGVLPHIEPVLLTKKTNEYYIQQEYDIFTASDNKKSRITPRYLMLA 164 (209)
Q Consensus 87 ~kk~rItP~hLq~AV~nD~EL~~ll~~~~ia~--ggv~P~i~~~lL~~~~~~~~~~lelA~~~a~~~~k~rItPrhl~lA 164 (209)
..+++.+...|+|+|.+ ++++|+++.++. |..+|+|++++|||++++ |||||+|+|+|+++.|||||||++|
T Consensus 15 k~~srS~ragL~FPVgR---i~R~Lk~g~~a~RIg~~A~VYLAAVLEYLtaE---VLELAgnaa~d~kk~RItPrHi~lA 88 (132)
T PLN00157 15 KATSRSAKAGLQFPVGR---IARYLKAGKYATRVGAGAPVYLAAVLEYLAAE---VLELAGNAARDNKKSRIVPRHIQLA 88 (132)
T ss_pred CCcCcccccCcccchHH---HHHHHhcCchhhhcCCCcHhHHHHHHHHHHHH---HHHHHHHHHHhcCCccccHHHHhhc
Confidence 35678999999999999 999999999988 889999999999999999 9999999999999999999999999
Q ss_pred ccChHHHhhhhccccccCccccCCCCccccccccCCC
Q psy5184 165 IKNDEELAKLLCGVTIAQGGVLPHIEPVLLTKKTNGK 201 (209)
Q Consensus 165 i~ndeeL~~L~~~~tia~ggv~p~i~~~l~~kk~~~~ 201 (209)
|+||+||++||++|||+||||+|+||++|+|||++++
T Consensus 89 I~nDeEL~~Ll~~vtIa~GGV~P~i~~~ll~kk~~~~ 125 (132)
T PLN00157 89 VRNDEELSKLLGGVTIAAGGVLPNIHSVLLPKKSGKS 125 (132)
T ss_pred ccCcHHHHHHHcCceecCCccCCCcchhhcCCCCCCC
Confidence 9999999999999999999999999999999987544
No 14
>PTZ00017 histone H2A; Provisional
Probab=99.97 E-value=3.2e-33 Score=222.42 Aligned_cols=109 Identities=45% Similarity=0.535 Sum_probs=103.4
Q ss_pred cCCcccchhhhHHHhhccHHHHhhhcCceecC--CCCCCccccccccccccccccccccccccccccccccccccchhhh
Q psy5184 87 NKKSRITPRYLMLAIKNDEELAKLLCGVTIAQ--GGVLPHIEPVLLTKKTNEYYIQQEYDIFTASDNKKSRITPRYLMLA 164 (209)
Q Consensus 87 ~kk~rItP~hLq~AV~nD~EL~~ll~~~~ia~--ggv~P~i~~~lL~~~~~~~~~~lelA~~~a~~~~k~rItPrhl~lA 164 (209)
..++|.+...|+|+|.+ ++++|+++.++. +..+|+|++++|||++++ |||||+|+|+|+++.|||||||++|
T Consensus 16 k~~srS~ragL~FPVgR---i~R~Lk~g~~a~RV~a~A~VYLAAVLEYLtaE---ILELAgNaa~d~kk~RItPrHi~lA 89 (134)
T PTZ00017 16 KPVSRSAKAGLQFPVGR---VHRYLKKGRYAKRVGAGAPVYLAAVLEYLTAE---VLELAGNAAKDNKKKRITPRHIQLA 89 (134)
T ss_pred CcccccccCCcccchHH---HHHHHhccchhccccccchhhhHHHHHHHHHH---HHHHHHHHHHhcCCCeecHHHHHhh
Confidence 34678999999999999 999999998887 888999999999999999 9999999999999999999999999
Q ss_pred ccChHHHhhhhccccccCccccCCCCccccccccCCC
Q psy5184 165 IKNDEELAKLLCGVTIAQGGVLPHIEPVLLTKKTNGK 201 (209)
Q Consensus 165 i~ndeeL~~L~~~~tia~ggv~p~i~~~l~~kk~~~~ 201 (209)
|+||+||++||++|||+||||+|+||++|+|+|++.+
T Consensus 90 I~nDeEL~~Ll~~vtIa~GGV~P~i~~~l~~k~~~~~ 126 (134)
T PTZ00017 90 IRNDEELNKLLAGVTIASGGVLPNIHKVLLPKKSKPK 126 (134)
T ss_pred ccCcHHHHHHHcCCcccCCccCCCccHhhccCCCCcc
Confidence 9999999999999999999999999999999987654
No 15
>PLN00154 histone H2A; Provisional
Probab=99.97 E-value=4.1e-33 Score=221.62 Aligned_cols=106 Identities=35% Similarity=0.408 Sum_probs=99.1
Q ss_pred cCCcccchhhhHHHhhccHHHHhhhcCce-ecC--CCCCCccccccccccccccccccccccccccccccccccccchhh
Q psy5184 87 NKKSRITPRYLMLAIKNDEELAKLLCGVT-IAQ--GGVLPHIEPVLLTKKTNEYYIQQEYDIFTASDNKKSRITPRYLML 163 (209)
Q Consensus 87 ~kk~rItP~hLq~AV~nD~EL~~ll~~~~-ia~--ggv~P~i~~~lL~~~~~~~~~~lelA~~~a~~~~k~rItPrhl~l 163 (209)
..++|.+.+.|+|+|.+ ++++|+++. +++ |..+|+|++++|||++++ |||||+|+|+|++++|||||||+|
T Consensus 27 k~~srS~rAgL~FPVgR---i~r~Lk~g~~~~~RVga~ApVYLAAVLEYLtAE---VLELAGNaA~d~kk~RItPrHi~l 100 (136)
T PLN00154 27 KPTSRSSRAGLQFPVGR---IHRQLKQRVSAHGRVGATAAVYTAAILEYLTAE---VLELAGNASKDLKVKRITPRHLQL 100 (136)
T ss_pred CCcCcccccCccCchHH---HHHHHHhhhhhccccccchHHHHHHHHHHHHHH---HHHHHHHHHHhhCCceecHHHhhh
Confidence 45678999999999999 999999986 443 888999999999999999 999999999999999999999999
Q ss_pred hccChHHHhhhhccccccCccccCCCCccccccccC
Q psy5184 164 AIKNDEELAKLLCGVTIAQGGVLPHIEPVLLTKKTN 199 (209)
Q Consensus 164 Ai~ndeeL~~L~~~~tia~ggv~p~i~~~l~~kk~~ 199 (209)
||+|||||++||+ +||++|||+|+||++|++||++
T Consensus 101 AIrnDeEL~~Ll~-~TIa~GGVlP~i~~~l~~k~~~ 135 (136)
T PLN00154 101 AIRGDEELDTLIK-GTIAGGGVIPHIHKSLINKSTK 135 (136)
T ss_pred hccCcHHHHHHhc-CCccCCccCCCcchhhcccccC
Confidence 9999999999998 7999999999999999999864
No 16
>KOG1756|consensus
Probab=99.97 E-value=6.6e-33 Score=217.17 Aligned_cols=108 Identities=48% Similarity=0.561 Sum_probs=102.3
Q ss_pred CCcccchhhhHHHhhccHHHHhhhcCceecC--CCCCCccccccccccccccccccccccccccccccccccccchhhhc
Q psy5184 88 KKSRITPRYLMLAIKNDEELAKLLCGVTIAQ--GGVLPHIEPVLLTKKTNEYYIQQEYDIFTASDNKKSRITPRYLMLAI 165 (209)
Q Consensus 88 kk~rItP~hLq~AV~nD~EL~~ll~~~~ia~--ggv~P~i~~~lL~~~~~~~~~~lelA~~~a~~~~k~rItPrhl~lAi 165 (209)
..++...+.|+|+|.+ +.++|+++.+++ |...|+|++++|+|++++ |+|+|+|+|+||++.||||||++|||
T Consensus 17 ~~srs~~agl~fPvgr---i~r~Lr~~~~~~ri~~gapV~laavLeYL~Ae---ile~agnaardnkk~ri~PrH~~lAI 90 (131)
T KOG1756|consen 17 KSSRSSRAGLQFPVGR---IHRLLRKGRYAQRVGAGAPVYLAAVLEYLTAE---ILELAGNAARDNKKTRITPRHLQLAI 90 (131)
T ss_pred hcchhhhcccccCHHH---HHHHHHccchhhhccCCChHHHHHHHHHHHHH---HHHHhHHHhhhcCccccChHHHHHHH
Confidence 3456889999999998 999999998988 899999999999999999 99999999999999999999999999
Q ss_pred cChHHHhhhhccccccCccccCCCCccccccccCCC
Q psy5184 166 KNDEELAKLLCGVTIAQGGVLPHIEPVLLTKKTNGK 201 (209)
Q Consensus 166 ~ndeeL~~L~~~~tia~ggv~p~i~~~l~~kk~~~~ 201 (209)
||||||++|+++|||+||||+|+||+.|||||+.+.
T Consensus 91 ~NDeEL~~lL~~vtIa~GGvlPnI~~~lLpKk~~~~ 126 (131)
T KOG1756|consen 91 RNDEELNKLLGKVTIAQGGVLPNIQAILLPKKTGKH 126 (131)
T ss_pred hCcHHHHHHhccceeccCCcccccchhhcccccccC
Confidence 999999999999999999999999999999997654
No 17
>smart00414 H2A Histone 2A.
Probab=99.97 E-value=5.4e-32 Score=208.59 Aligned_cols=103 Identities=51% Similarity=0.591 Sum_probs=98.4
Q ss_pred cccchhhhHHHhhccHHHHhhhcCceecC--CCCCCccccccccccccccccccccccccccccccccccccchhhhccC
Q psy5184 90 SRITPRYLMLAIKNDEELAKLLCGVTIAQ--GGVLPHIEPVLLTKKTNEYYIQQEYDIFTASDNKKSRITPRYLMLAIKN 167 (209)
Q Consensus 90 ~rItP~hLq~AV~nD~EL~~ll~~~~ia~--ggv~P~i~~~lL~~~~~~~~~~lelA~~~a~~~~k~rItPrhl~lAi~n 167 (209)
+|.+...|+|+|.+ +++++++++++. +..+|+|++++|||++++ |||+|+|+|+|+++.||||||+++||+|
T Consensus 1 srS~ragL~fPVgR---i~r~Lk~~~~~~Rv~~~A~VyLaAvLEYLtaE---ILeLagn~a~~~k~~rItp~hi~lAi~n 74 (106)
T smart00414 1 SRSARAGLQFPVGR---IHRLLRKGTYAKRVGAGAPVYLAAVLEYLTAE---VLELAGNAARDNKKRRITPRHLQLAIRN 74 (106)
T ss_pred CccccCCccCchHH---HHHHHHcCccccccccccHHHHHHHHHHHHHH---HHHHHHHHHHhcCCCccchHHHhhhccC
Confidence 35678899999999 999999998887 888999999999999999 9999999999999999999999999999
Q ss_pred hHHHhhhhccccccCccccCCCCcccccccc
Q psy5184 168 DEELAKLLCGVTIAQGGVLPHIEPVLLTKKT 198 (209)
Q Consensus 168 deeL~~L~~~~tia~ggv~p~i~~~l~~kk~ 198 (209)
|+||++||++|||++|||+|+||++|+|||+
T Consensus 75 D~EL~~L~~~vti~~ggv~p~i~~~l~~~~~ 105 (106)
T smart00414 75 DEELNKLLKGVTIAQGGVLPNIHKVLLPKKT 105 (106)
T ss_pred CHHHHHHHcCcccCCCccCCCcchhhcccCC
Confidence 9999999999999999999999999999885
No 18
>COG5262 HTA1 Histone H2A [Chromatin structure and dynamics]
Probab=99.96 E-value=6.7e-31 Score=203.36 Aligned_cols=114 Identities=43% Similarity=0.509 Sum_probs=103.3
Q ss_pred CcccchhhhHHHhhccHHHHhhhcCceecC--CCCCCccccccccccccccccccccccccccccccccccccchhhhcc
Q psy5184 89 KSRITPRYLMLAIKNDEELAKLLCGVTIAQ--GGVLPHIEPVLLTKKTNEYYIQQEYDIFTASDNKKSRITPRYLMLAIK 166 (209)
Q Consensus 89 k~rItP~hLq~AV~nD~EL~~ll~~~~ia~--ggv~P~i~~~lL~~~~~~~~~~lelA~~~a~~~~k~rItPrhl~lAi~ 166 (209)
.++...+.++|+|.+ +.++++...+.+ |...|+|.+++|+|++++ |+|+|+|+|+|++++||+|||||+|||
T Consensus 17 ~s~sa~agl~fpvgr---vkr~lk~~~~~~Rig~~A~Vyl~AvleYL~aE---ilelAgNaA~d~kkkri~PrHlqlAIr 90 (132)
T COG5262 17 QSRSAKAGLIFPVGR---VKRLLKKGNYRMRIGAGAPVYLAAVLEYLAAE---ILELAGNAARDNKKKRIIPRHLQLAIR 90 (132)
T ss_pred cchhhhcCccccHHH---HHHHHHcCccceeecCCcHHHHHHHHHHHHHH---HHHHhhhhhhhcCcceechHHHHHHhc
Confidence 457788999999999 899998777776 899999999999999999 999999999999999999999999999
Q ss_pred ChHHHhhhhccccccCccccCCCCccccccccCCCCCCCCCCC
Q psy5184 167 NDEELAKLLCGVTIAQGGVLPHIEPVLLTKKTNGKNTSGSQEY 209 (209)
Q Consensus 167 ndeeL~~L~~~~tia~ggv~p~i~~~l~~kk~~~~~~~~~~~~ 209 (209)
||+||+.|+.++||++|||+|||++.|+++..++. .+.||++
T Consensus 91 nD~EL~~l~~~~tIa~GGvlp~I~~~ll~k~skK~-sk~~~~~ 132 (132)
T COG5262 91 NDEELNKLLGDVTIAQGGVLPNINPGLLPKSSKKG-SKRSQEL 132 (132)
T ss_pred CcHHHHHHhhhheeecCCcccccChhhhhhhhccC-CcccccC
Confidence 99999999999999999999999999999865443 3446653
No 19
>cd00074 H2A Histone 2A; H2A is a subunit of the nucleosome. The nucleosome is an octamer containing two H2A, H2B, H3, and H4 subunits. The H2A subunit performs essential roles in maintaining structural integrity of the nucleosome, chromatin condensation, and binding of specific chromatin-associated proteins.
Probab=99.95 E-value=4.2e-30 Score=200.67 Aligned_cols=104 Identities=47% Similarity=0.564 Sum_probs=98.9
Q ss_pred CCcccchhhhHHHhhccHHHHhhhcCceecC--CCCCCccccccccccccccccccccccccccccccccccccchhhhc
Q psy5184 88 KKSRITPRYLMLAIKNDEELAKLLCGVTIAQ--GGVLPHIEPVLLTKKTNEYYIQQEYDIFTASDNKKSRITPRYLMLAI 165 (209)
Q Consensus 88 kk~rItP~hLq~AV~nD~EL~~ll~~~~ia~--ggv~P~i~~~lL~~~~~~~~~~lelA~~~a~~~~k~rItPrhl~lAi 165 (209)
.+++.+...|+|+|.+ ++++++++.++. +..+|+|++++|||++++ |+|+|+|.|++++++|||||||++||
T Consensus 10 ~~s~s~ragL~fPV~r---i~R~Lk~~~~a~RVs~~A~VyLaAvLEYL~aE---IlelA~n~ak~~k~krItp~hi~lAi 83 (115)
T cd00074 10 KRSRSARAGLQFPVGR---IHRYLKKGRYAERVGAGAPVYLAAVLEYLTAE---VLELAGNAARDNKKKRITPRHLQLAV 83 (115)
T ss_pred ccccccccCccCcHHH---HHHHHHcCccccccccchHHHHHHHHHHHHHH---HHHHHHHHHHHcCCCeEcHHHHHHHH
Confidence 4568899999999999 999999988876 788999999999999999 99999999999999999999999999
Q ss_pred cChHHHhhhhccccccCccccCCCCccccccc
Q psy5184 166 KNDEELAKLLCGVTIAQGGVLPHIEPVLLTKK 197 (209)
Q Consensus 166 ~ndeeL~~L~~~~tia~ggv~p~i~~~l~~kk 197 (209)
+||+||++||+++||+||||+|+||++|+++|
T Consensus 84 ~nD~EL~~L~~~vtI~~ggv~p~i~~~l~~~~ 115 (115)
T cd00074 84 RNDEELNKLLKGVTIASGGVLPNIHKVLLPKK 115 (115)
T ss_pred hccHHHHHHHcCCcccCCccCCCcchhhcCCC
Confidence 99999999999999999999999999999875
No 20
>KOG1757|consensus
Probab=99.94 E-value=5.7e-29 Score=191.39 Aligned_cols=106 Identities=37% Similarity=0.421 Sum_probs=96.3
Q ss_pred CCcccchhhhHHHhhccHHHHhhhcCceecCCCCC---Cccccccccccccccccccccccccccccccccccccchhhh
Q psy5184 88 KKSRITPRYLMLAIKNDEELAKLLCGVTIAQGGVL---PHIEPVLLTKKTNEYYIQQEYDIFTASDNKKSRITPRYLMLA 164 (209)
Q Consensus 88 kk~rItP~hLq~AV~nD~EL~~ll~~~~ia~ggv~---P~i~~~lL~~~~~~~~~~lelA~~~a~~~~k~rItPrhl~lA 164 (209)
..+++.++.|||+|.+ ++++|+.-+.++|.|- .+|.+++|+|++++ +||||+|+++|.+.+||||||||||
T Consensus 20 ~vs~s~raGlqFpVgR---ihr~LK~r~t~h~rVGataavy~aaileYLTaE---VLeLAgNasKdLKvKRitprHlqLA 93 (131)
T KOG1757|consen 20 AVSRSARAGLQFPVGR---IHRHLKTRTTSHGRVGATAAVYSAAILEYLTAE---VLELAGNASKDLKVKRITPRHLQLA 93 (131)
T ss_pred hhhHHHhcccccchHH---HHHHHHHhcccccccchHHHHHHHHHHHHHHHH---HHHHcccccccceeeeccchhheee
Confidence 3467899999999999 9999988877775554 47999999999999 9999999999999999999999999
Q ss_pred ccChHHHhhhhccccccCccccCCCCccccccccCC
Q psy5184 165 IKNDEELAKLLCGVTIAQGGVLPHIEPVLLTKKTNG 200 (209)
Q Consensus 165 i~ndeeL~~L~~~~tia~ggv~p~i~~~l~~kk~~~ 200 (209)
|+.|||||.|++. ||++|||+||||++|+-|++++
T Consensus 94 iRGDeELDtLIk~-TiagGgViPhihk~l~~k~~~~ 128 (131)
T KOG1757|consen 94 IRGDEELDTLIKA-TIAGGGVIPHIHKSLINKKGKK 128 (131)
T ss_pred ecCcHHHHHHHHH-hhccCccccchHHHHhcccccc
Confidence 9999999999985 9999999999999999887654
No 21
>PLN00155 histone H2A; Provisional
Probab=99.85 E-value=7.6e-22 Score=135.97 Aligned_cols=47 Identities=64% Similarity=1.024 Sum_probs=45.3
Q ss_pred cccCCCCcccccccChhhHHHHHhhCCccccccCCchhHHHHHHHHH
Q psy5184 26 AARRTRSAKANIVFPVSRIQRYLKRGNYSERIGIGASVFLAATLEYL 72 (209)
Q Consensus 26 ~~~~s~s~RagL~FPV~ri~r~Lk~~~~~~ris~~A~VyLaAvLEYL 72 (209)
++..|+|+||||||||+||||+|++++|+.||+++||||||||||||
T Consensus 12 ~k~~srS~rAgL~FPVgri~r~Lr~g~~a~Rvga~apVYlAAVLEYL 58 (58)
T PLN00155 12 KKAVSRSAKAGLQFPVGRIARYLKKGKYAERIGAGAPVYLAAVLEYL 58 (58)
T ss_pred cCccCcccccccccchHHHHHHHhcCChhhcccCCcHHHHHHHHHhC
Confidence 46789999999999999999999999999999999999999999997
No 22
>PLN00156 histone H2AX; Provisional
Probab=99.41 E-value=9.9e-14 Score=111.28 Aligned_cols=70 Identities=51% Similarity=0.718 Sum_probs=55.8
Q ss_pred CchhHHHHHHHHHHHHHHHHHhhhhcccCCcccchhhhHHHhhccHHHHhhhcCceecCCCCCCccccccccccccc
Q psy5184 60 GASVFLAATLEYLVAEILELAGNAASDNKKSRITPRYLMLAIKNDEELAKLLCGVTIAQGGVLPHIEPVLLTKKTNE 136 (209)
Q Consensus 60 ~A~VyLaAvLEYL~aEILelAgn~A~~~kk~rItP~hLq~AV~nD~EL~~ll~~~~ia~ggv~P~i~~~lL~~~~~~ 136 (209)
...-||++=+=-|... -|-+ ++++||+|+||++||+||+||+.||+++||++|||+|+||+++|++++.+
T Consensus 58 AVLEYLtaEVLELAgN---aa~d----~kk~RItPrHi~lAIrnDeEL~~Ll~~vTIa~GGV~P~i~~~l~~kk~~~ 127 (139)
T PLN00156 58 AVLEYLAAEVLELAGN---AARD----NKKNRIVPRHIQLAVRNDEELSKLLGSVTIAAGGVLPNIHQTLLPKKVGK 127 (139)
T ss_pred HHHHHHHHHHHHHHHH---HHHH----cCCCcCcHHHHHhhccCcHHHHHHHCCCccCCCccCCCccHhhccccccc
Confidence 3556777643333332 2322 25689999999999999999999999999999999999999999998765
No 23
>PTZ00252 histone H2A; Provisional
Probab=99.40 E-value=1.4e-13 Score=109.58 Aligned_cols=69 Identities=35% Similarity=0.584 Sum_probs=53.3
Q ss_pred chhHHHHHHHHHHHHHHHHHhhhhcccCCcccchhhhHHHhhccHHHHhhhcCceecCCCCCCccccccccccc
Q psy5184 61 ASVFLAATLEYLVAEILELAGNAASDNKKSRITPRYLMLAIKNDEELAKLLCGVTIAQGGVLPHIEPVLLTKKT 134 (209)
Q Consensus 61 A~VyLaAvLEYL~aEILelAgn~A~~~kk~rItP~hLq~AV~nD~EL~~ll~~~~ia~ggv~P~i~~~lL~~~~ 134 (209)
..-||+|=+=-|... +.....+ +++||+|+||++||+||+|||+||+++||++|||+|+||+.+++++.
T Consensus 55 VLEYLtaEVLELAgn----aa~d~~~-kk~RItPrHi~lAIrNDeEL~~Ll~~vTIa~GGVlP~i~~~l~~k~~ 123 (134)
T PTZ00252 55 VLEYLTAELLELSVK----AAAQQAK-KPKRLTPRTVTLAVRHDDDLGSLLKNVTLSRGGVMPSLNKALAKKHK 123 (134)
T ss_pred HHHHHHHHHHHHHHH----HHHhccC-CcccccHHHHHhhccChHHHHHHHcCCccCCCccCCCccHhhccccc
Confidence 556777643333333 2222122 34799999999999999999999999999999999999999999843
No 24
>PF00125 Histone: Core histone H2A/H2B/H3/H4 histone h2a signature histone h2b signature histone h3 signature histone h4 signature; InterPro: IPR007125 The core histones together with some other DNA binding proteins appear to form a superfamily defined by a common fold and distant sequence similarities [, ]. Some proteins contain local homology domains related to the histone fold [].; GO: 0003677 DNA binding; PDB: 2YFW_D 2YFV_B 1U35_H 2F8N_D 2PYO_D 2NQB_D 3AN2_C 3AZJ_C 3AV1_G 3AZM_G ....
Probab=99.36 E-value=4.7e-13 Score=95.87 Aligned_cols=73 Identities=42% Similarity=0.549 Sum_probs=68.4
Q ss_pred CcccccccChhhHHHHHhhCCccc-cccCCchhHHHHHHHHHHHHHHHHHhhhhcccCCcccchhhhHHHhhcc
Q psy5184 32 SAKANIVFPVSRIQRYLKRGNYSE-RIGIGASVFLAATLEYLVAEILELAGNAASDNKKSRITPRYLMLAIKND 104 (209)
Q Consensus 32 s~RagL~FPV~ri~r~Lk~~~~~~-ris~~A~VyLaAvLEYL~aEILelAgn~A~~~kk~rItP~hLq~AV~nD 104 (209)
+.+..+.||+.|+.+-+..+.+.. ||+..|.+||.+++||++.+|++.|++.|...++.+|+|+||++|++.|
T Consensus 2 ~~~~~~~~~~~r~~r~i~~~~~~~~ris~~a~~~L~~~~E~~~~~il~~A~~~a~~~kR~tI~~~DI~~A~r~~ 75 (75)
T PF00125_consen 2 TRRLIPKFPFSRLLREIGEEILSKYRISSEALVALQSVLEYLLVEILEEAGNLARHAKRKTITPRDIQLAVRID 75 (75)
T ss_dssp HSHSSSHHHHHHHHHHHHHTTSSSSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTBSEEGHHHHHHHHHHT
T ss_pred cccccCceEEeeeeehhhcccccccccccccchhhhhhhhhhhhhhhhHHHHHHhhcCCcEecHHHHHHHHhcC
Confidence 456788999999999999987775 9999999999999999999999999999999999999999999999875
No 25
>COG5247 BUR6 Class 2 transcription repressor NC2, alpha subunit (DRAP1 homolog) [Transcription]
Probab=99.25 E-value=9.7e-12 Score=94.68 Aligned_cols=80 Identities=24% Similarity=0.446 Sum_probs=74.5
Q ss_pred ccccccChhhHHHHHhhCCccccccCCchhHHHHHHHHHHHHHHHHHhhhhcccCCcccchhhhHHHhhccHHHHhhhcC
Q psy5184 34 KANIVFPVSRIQRYLKRGNYSERIGIGASVFLAATLEYLVAEILELAGNAASDNKKSRITPRYLMLAIKNDEELAKLLCG 113 (209)
Q Consensus 34 RagL~FPV~ri~r~Lk~~~~~~ris~~A~VyLaAvLEYL~aEILelAgn~A~~~kk~rItP~hLq~AV~nD~EL~~ll~~ 113 (209)
+-...||++|++++||-+.+..+|++.+||..+..||+++++|+.+++..|+..+.+|+|..+|..|+.+|+.++ ||++
T Consensus 19 ~~ktrFP~ar~KkIMQ~deDiGKV~q~tPVIaskalE~Fl~~iv~~s~k~aR~~~skR~t~e~lk~a~~sdekFd-FL~~ 97 (113)
T COG5247 19 KKKTRFPIARLKKIMQLDEDIGKVGQSTPVIASKALEMFLTEIVGLSLKEARKKSSKRMTSEFLKRATESDEKFD-FLKN 97 (113)
T ss_pred hhhhcCCHHHHHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHhhhHHHH-HHHH
Confidence 445569999999999999999999999999999999999999999999999999999999999999999999998 6655
Q ss_pred c
Q psy5184 114 V 114 (209)
Q Consensus 114 ~ 114 (209)
.
T Consensus 98 ~ 98 (113)
T COG5247 98 M 98 (113)
T ss_pred H
Confidence 3
No 26
>KOG1659|consensus
Probab=98.96 E-value=6.6e-10 Score=94.58 Aligned_cols=77 Identities=16% Similarity=0.314 Sum_probs=73.0
Q ss_pred ccccChhhHHHHHhhCCccccccCCchhHHHHHHHHHHHHHHHHHhhhhcccCCcccchhhhHHHhhccHHHHhhhcC
Q psy5184 36 NIVFPVSRIQRYLKRGNYSERIGIGASVFLAATLEYLVAEILELAGNAASDNKKSRITPRYLMLAIKNDEELAKLLCG 113 (209)
Q Consensus 36 gL~FPV~ri~r~Lk~~~~~~ris~~A~VyLaAvLEYL~aEILelAgn~A~~~kk~rItP~hLq~AV~nD~EL~~ll~~ 113 (209)
.-.||++||+++||.+....+|.+.+||.+...||.|+.+|+..++.+++..+.+++++.||..+|.+|+.|+ ||++
T Consensus 11 ~trfp~aRiKKIMQ~dEdIGKvaqavPViisralElFl~~l~~~t~~~t~~~~aKt~s~~hlkq~v~~~~~Fd-FLk~ 87 (224)
T KOG1659|consen 11 KTRFPPARIKKIMQSDEDIGKVAQAVPVIISRALELFLESLLQKTLEITRSRGAKTVSSSHLKQAVESDPKFD-FLKE 87 (224)
T ss_pred hccCCHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCccccCHHHHHHHHhccchhH-HHHH
Confidence 4459999999999999999999999999999999999999999999999999999999999999999999988 6655
No 27
>PF00808 CBFD_NFYB_HMF: Histone-like transcription factor (CBF/NF-Y) and archaeal histone; InterPro: IPR003958 The CCAAT-binding factor (CBF) is a mammalian transcription factor that binds to a CCAAT motif in the promoters of a wide variety of genes, including type I collagen and albumin. The factor is a heteromeric complex of A and B subunits, both of which are required for DNA-binding [, ]. The subunits can interact in the absence of DNA-binding, conserved regions in each being important in mediating this interaction. The A subunit can be split into 3 domains on the basis of sequence similarity, a non-conserved N-terminal 'A domain'; a highly-conserved central 'B domain' involved in DNA-binding; and a C-terminal 'C domain', which contains a number of glutamine and acidic residues involved in protein-protein interactions []. The A subunit shows striking similarity to the HAP3 subunit of the yeast CCAAT-binding heterotrimeric transcription factor [, ]. The Kluyveromyces lactis HAP3 protein has been predicted to contain a 4-cysteine zinc finger, which is thought to be present in similar HAP3 and CBF subunit A proteins, in which the third cysteine is replaced by a serine []. This domain is found in the CCAAT transcription factor and archaeal histones.; GO: 0043565 sequence-specific DNA binding, 0005622 intracellular; PDB: 1F1E_A 2BYM_D 2BYK_D 1HTA_A 1B67_A 1JFI_B 1KU5_B 1N1J_A 1BFM_A 1B6W_A ....
Probab=98.52 E-value=1.8e-07 Score=65.51 Aligned_cols=64 Identities=22% Similarity=0.275 Sum_probs=57.4
Q ss_pred ccChhhHHHHHhhCCccccccCCchhHHHHHHHHHHHHHHHHHhhhhcccCCcccchhhhHHHh
Q psy5184 38 VFPVSRIQRYLKRGNYSERIGIGASVFLAATLEYLVAEILELAGNAASDNKKSRITPRYLMLAI 101 (209)
Q Consensus 38 ~FPV~ri~r~Lk~~~~~~ris~~A~VyLaAvLEYL~aEILelAgn~A~~~kk~rItP~hLq~AV 101 (209)
.||+++|+|+|+......+|+.+|..+++-+.|.|+.+|...|...|...+++.|++.||..||
T Consensus 2 ~lP~a~vkri~k~~~~~~~vs~ea~~~i~~a~e~Fi~~l~~~A~~~a~~~~rkti~~~Dv~~Av 65 (65)
T PF00808_consen 2 SLPLARVKRIMKSDPDVMRVSKEAVEAIAKAAEEFIQYLAKEANEIAQRDKRKTITYEDVAKAV 65 (65)
T ss_dssp SS-HHHHHHHHHHTSTTSEE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSEE-HHHHHHHH
T ss_pred CCChHHHHHHhccCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHC
Confidence 5999999999999866679999999999999999999999999999999999999999998875
No 28
>PLN00035 histone H4; Provisional
Probab=97.98 E-value=1e-05 Score=62.27 Aligned_cols=77 Identities=16% Similarity=0.188 Sum_probs=67.7
Q ss_pred cccccCCCCcccccccChhhHHHHHhhCCccccccCCchhHHHHHHHHHHHHHHHHHhhhhcccCCcccchhhhHHHhhc
Q psy5184 24 SNAARRTRSAKANIVFPVSRIQRYLKRGNYSERIGIGASVFLAATLEYLVAEILELAGNAASDNKKSRITPRYLMLAIKN 103 (209)
Q Consensus 24 ~~~~~~s~s~RagL~FPV~ri~r~Lk~~~~~~ris~~A~VyLaAvLEYL~aEILelAgn~A~~~kk~rItP~hLq~AV~n 103 (209)
++.++..+.+-++ +|..-|.|+.+.+. ..|||.++-..+..+||.+..+|+.-|...+...+++.++..|+.+|+.+
T Consensus 17 kr~~k~~~d~i~~--ipk~~IrRLARr~G-vkRIS~~ay~elr~vle~~l~~I~~dav~ya~HA~RKTV~~~DV~~Alkr 93 (103)
T PLN00035 17 KRHRKVLRDNIQG--ITKPAIRRLARRGG-VKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKR 93 (103)
T ss_pred hHHHHHHHhhhcc--CCHHHHHHHHHHcC-cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHH
Confidence 3445566666777 77778999999975 78999999999999999999999999999999999999999999999876
No 29
>PTZ00015 histone H4; Provisional
Probab=97.78 E-value=4.5e-05 Score=58.68 Aligned_cols=77 Identities=16% Similarity=0.212 Sum_probs=65.2
Q ss_pred cccccCCCCcccccccChhhHHHHHhhCCccccccCCchhHHHHHHHHHHHHHHHHHhhhhcccCCcccchhhhHHHhhc
Q psy5184 24 SNAARRTRSAKANIVFPVSRIQRYLKRGNYSERIGIGASVFLAATLEYLVAEILELAGNAASDNKKSRITPRYLMLAIKN 103 (209)
Q Consensus 24 ~~~~~~s~s~RagL~FPV~ri~r~Lk~~~~~~ris~~A~VyLaAvLEYL~aEILelAgn~A~~~kk~rItP~hLq~AV~n 103 (209)
++.++..+.+-.|+ |..-|.|+.+.+. ..|||.++-..+..+||.+..+|+.-|...|...+++.++.+++.+|+.+
T Consensus 18 kr~rk~~r~~i~gI--~k~~IrRLarr~G-vkRIS~d~y~e~r~vle~~l~~I~rdav~~aeHA~RKTVt~~DV~~AlKr 94 (102)
T PTZ00015 18 KRQKKVLRDNIRGI--TKGAIRRLARRGG-VKRISGDIYEEVRGVLKAFLENVVRDSTAYTEYARRKTVTAMDVVYALKR 94 (102)
T ss_pred hhHHHHHhhcccCC--CHHHHHHHHHHcC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHh
Confidence 34455556666674 5556999999974 68999999999999999999999999999999999999999999999865
No 30
>smart00803 TAF TATA box binding protein associated factor. TAFs (TATA box binding protein associated factors) are part of the transcription initiation factor TFIID multimeric protein complex. TFIID is composed of the TATA box binding protein (TBP) and a number of TAFs. The TAFs provide binding sites for many different transcriptional activators and co-activators that modulate transcription initiation by Pol II. TAF proteins adopt a histone-like fold.
Probab=97.47 E-value=0.00027 Score=50.01 Aligned_cols=63 Identities=21% Similarity=0.230 Sum_probs=58.5
Q ss_pred ccChhhHHHHHhhCCccccccCCchhHHHHHHHHHHHHHHHHHhhhhcccCCcccchhhhHHHh
Q psy5184 38 VFPVSRIQRYLKRGNYSERIGIGASVFLAATLEYLVAEILELAGNAASDNKKSRITPRYLMLAI 101 (209)
Q Consensus 38 ~FPV~ri~r~Lk~~~~~~ris~~A~VyLaAvLEYL~aEILelAgn~A~~~kk~rItP~hLq~AV 101 (209)
.||..-|.|+.+... ..||+..+...|+-.+||...+|+.-|.+.++..+++.++..|+.+|+
T Consensus 2 ~~p~~~i~ria~~~G-i~ris~~a~~~l~~~~e~rl~~i~~~A~k~~~hakRktlt~~DI~~Al 64 (65)
T smart00803 2 WLPKETIKDVAESLG-IGNLSDEAAKLLAEDVEYRIKEIVQEALKFMRHSKRTTLTTSDIDSAL 64 (65)
T ss_pred CCCHHHHHHHHHHCC-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeecHHHHHHHh
Confidence 479999999999865 469999999999999999999999999999999999999999999886
No 31
>COG2036 HHT1 Histones H3 and H4 [Chromatin structure and dynamics]
Probab=97.28 E-value=0.00035 Score=52.72 Aligned_cols=68 Identities=26% Similarity=0.373 Sum_probs=60.8
Q ss_pred cccccChhhHHHHHhhCCccccccCCchhHHHHHHHHHHHHHHHHHhhhhcccCCcccchhhhHHHhhc
Q psy5184 35 ANIVFPVSRIQRYLKRGNYSERIGIGASVFLAATLEYLVAEILELAGNAASDNKKSRITPRYLMLAIKN 103 (209)
Q Consensus 35 agL~FPV~ri~r~Lk~~~~~~ris~~A~VyLaAvLEYL~aEILelAgn~A~~~kk~rItP~hLq~AV~n 103 (209)
..+-+|+.=|.|+|++. -..||+.+|...|.-++|-++.+|.+.|...|...+++.|++.++++++..
T Consensus 16 ~~~~Lp~apv~Ri~r~~-~~~Rvs~~A~~~l~~~~e~~~~~i~~~A~~~A~ha~RKTV~~~DI~la~~~ 83 (91)
T COG2036 16 TDLLLPKAPVRRILRKA-GAERVSSSAIEELQEALEEYLEEIAEDAVELAEHAKRKTVKAEDIKLALKR 83 (91)
T ss_pred hhhhcCchHHHHHHHHH-hHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHHH
Confidence 34557777799999985 345999999999999999999999999999999999999999999999875
No 32
>cd00076 H4 Histone H4, one of the four histones, along with H2A, H2B and H3, which forms the eukaryotic nucleosome core; along with H3, it plays a central role in nucleosome formation; histones bind to DNA and wrap the genetic material into "beads on a string" in which DNA (the string) is wrapped around small blobs of histones (the beads) at regular intervals; play a role in the inheritance of specialized chromosome structures and the control of gene activity; defects in the establishment of proper chromosome structure by histones may activate or silence genes aberrantly and thus lead to disease; the sequence of histone H4 has remained almost invariant in more than 2 billion years of evolution
Probab=97.23 E-value=0.00048 Score=51.38 Aligned_cols=72 Identities=19% Similarity=0.249 Sum_probs=63.0
Q ss_pred CCCCcccccccChhhHHHHHhhCCccccccCCchhHHHHHHHHHHHHHHHHHhhhhcccCCcccchhhhHHHhhc
Q psy5184 29 RTRSAKANIVFPVSRIQRYLKRGNYSERIGIGASVFLAATLEYLVAEILELAGNAASDNKKSRITPRYLMLAIKN 103 (209)
Q Consensus 29 ~s~s~RagL~FPV~ri~r~Lk~~~~~~ris~~A~VyLaAvLEYL~aEILelAgn~A~~~kk~rItP~hLq~AV~n 103 (209)
.-+.+-+| +|..-|.|+.+.+. ..|||.++-.-+..+||.+..+|+.-|...+...+++.++..++.+|+.+
T Consensus 6 ~~~~~~~g--i~k~~I~RLarr~G-vkRIS~d~y~e~~~~l~~~l~~I~~dav~ya~Ha~RKTVt~~DV~~alkr 77 (85)
T cd00076 6 VLRDNIKG--ITKPAIRRLARRGG-VKRISGGVYDEVRNVLKSYLEDVIRDAVTYTEHAKRKTVTAMDVVYALKR 77 (85)
T ss_pred HHHHhhcc--CCHHHHHHHHHHcC-cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHH
Confidence 34455556 66667999999975 78999999999999999999999999999999999999999999999875
No 33
>KOG1657|consensus
Probab=97.18 E-value=0.00031 Score=61.44 Aligned_cols=78 Identities=21% Similarity=0.287 Sum_probs=70.9
Q ss_pred ccccccChhhHHHHHhhCCccccccCCchhHHHHHHHHHHHHHHHHHhhhhcccCCcccchhhhHHHhhccHHHHhhh
Q psy5184 34 KANIVFPVSRIQRYLKRGNYSERIGIGASVFLAATLEYLVAEILELAGNAASDNKKSRITPRYLMLAIKNDEELAKLL 111 (209)
Q Consensus 34 RagL~FPV~ri~r~Lk~~~~~~ris~~A~VyLaAvLEYL~aEILelAgn~A~~~kk~rItP~hLq~AV~nD~EL~~ll 111 (209)
=....||++||+++||.+....-|+..|||.++-++|+++.|+-..+...+..+++.-+...+|.-++.+.+-++.|+
T Consensus 70 ~~~~~lPlaRiKkimK~dedv~mI~~Eapvl~aka~E~Fi~elt~~sw~~Tee~~rrtl~~sdia~av~~s~~fdFL~ 147 (236)
T KOG1657|consen 70 FKNHILPLARIKKIMKSDEDVSMITAEAPVLFAKACELFITELTLRSWVHTEENKRRTLQKSDIAAAVTQSETFDFLR 147 (236)
T ss_pred hhhccCcHhhccccccccccccccchhHHHHHHHHHHHHHHHHHHHhhhhhcccccccchHHHHHHHhccCCCcccee
Confidence 345679999999999999888999999999999999999999999999999999998899999999999988887555
No 34
>PLN00155 histone H2A; Provisional
Probab=97.16 E-value=7.8e-05 Score=51.75 Aligned_cols=43 Identities=21% Similarity=0.163 Sum_probs=39.4
Q ss_pred CCcccchhhhHHHhhccHHHHhhhcCceecC--CCCCCcccccccccc
Q psy5184 88 KKSRITPRYLMLAIKNDEELAKLLCGVTIAQ--GGVLPHIEPVLLTKK 133 (209)
Q Consensus 88 kk~rItP~hLq~AV~nD~EL~~ll~~~~ia~--ggv~P~i~~~lL~~~ 133 (209)
.+++.+.+.|||+|.+ ++++|+++.++. |...|+|++++|||+
T Consensus 14 ~~srS~rAgL~FPVgr---i~r~Lr~g~~a~Rvga~apVYlAAVLEYL 58 (58)
T PLN00155 14 AVSRSAKAGLQFPVGR---IARYLKKGKYAERIGAGAPVYLAAVLEYL 58 (58)
T ss_pred ccCcccccccccchHH---HHHHHhcCChhhcccCCcHHHHHHHHHhC
Confidence 4678999999999999 999999999987 889999999999985
No 35
>COG5208 HAP5 CCAAT-binding factor, subunit C [Transcription]
Probab=97.14 E-value=0.0008 Score=58.20 Aligned_cols=75 Identities=24% Similarity=0.318 Sum_probs=68.5
Q ss_pred cccChhhHHHHHhhCCccccccCCchhHHHHHHHHHHHHHHHHHhhhhcccCCcccchhhhHHHhhccHHHHhhh
Q psy5184 37 IVFPVSRIQRYLKRGNYSERIGIGASVFLAATLEYLVAEILELAGNAASDNKKSRITPRYLMLAIKNDEELAKLL 111 (209)
Q Consensus 37 L~FPV~ri~r~Lk~~~~~~ris~~A~VyLaAvLEYL~aEILelAgn~A~~~kk~rItP~hLq~AV~nD~EL~~ll 111 (209)
+.+|..||+++|+.+....-|++.|||.++-+-|-+++|+--.|--.|..|++..+...+|.-||...+-++.|+
T Consensus 108 h~LPlARIkkvMKtdedVkMisaEaPvlFak~~EiFI~ELTmRAW~~ae~NkRRtLQksDia~Av~kSeMfDFLi 182 (286)
T COG5208 108 HNLPLARIKKVMKTDEDVKMISAEAPVLFAKITEIFIEELTMRAWINAEENKRRTLQKSDIAAAVKKSEMFDFLI 182 (286)
T ss_pred ccCcHHHHHHHHhcccchhheecccchHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHHHHHHHHHHHHHHHhHHh
Confidence 459999999999998888899999999999999999999999998888888888899999999999988887665
No 36
>PF00125 Histone: Core histone H2A/H2B/H3/H4 histone h2a signature histone h2b signature histone h3 signature histone h4 signature; InterPro: IPR007125 The core histones together with some other DNA binding proteins appear to form a superfamily defined by a common fold and distant sequence similarities [, ]. Some proteins contain local homology domains related to the histone fold [].; GO: 0003677 DNA binding; PDB: 2YFW_D 2YFV_B 1U35_H 2F8N_D 2PYO_D 2NQB_D 3AN2_C 3AZJ_C 3AV1_G 3AZM_G ....
Probab=97.08 E-value=7.1e-06 Score=58.49 Aligned_cols=47 Identities=26% Similarity=0.133 Sum_probs=42.0
Q ss_pred CCCCCccccccccccccccccccccccccccccccccccccchhhhccCh
Q psy5184 119 GGVLPHIEPVLLTKKTNEYYIQQEYDIFTASDNKKSRITPRYLMLAIKND 168 (209)
Q Consensus 119 ggv~P~i~~~lL~~~~~~~~~~lelA~~~a~~~~k~rItPrhl~lAi~nd 168 (209)
+..++.++.+++++...+ ++|.|.+.|..+++.+|+|+||++|+++|
T Consensus 29 s~~a~~~L~~~~E~~~~~---il~~A~~~a~~~kR~tI~~~DI~~A~r~~ 75 (75)
T PF00125_consen 29 SSEALVALQSVLEYLLVE---ILEEAGNLARHAKRKTITPRDIQLAVRID 75 (75)
T ss_dssp CHHHHHHHHHHHHHHHHH---HHHHHHHHHHHTTBSEEGHHHHHHHHHHT
T ss_pred ccccchhhhhhhhhhhhh---hhhHHHHHHhhcCCcEecHHHHHHHHhcC
Confidence 455667888888988888 99999999999999999999999999876
No 37
>smart00417 H4 Histone H4.
Probab=96.74 E-value=0.0023 Score=46.54 Aligned_cols=68 Identities=16% Similarity=0.164 Sum_probs=57.7
Q ss_pred CCCcccccccChhhHHHHHhhCCccccccCCchhHHHHHHHHHHHHHHHHHhhhhcccCCcccchhhhHHH
Q psy5184 30 TRSAKANIVFPVSRIQRYLKRGNYSERIGIGASVFLAATLEYLVAEILELAGNAASDNKKSRITPRYLMLA 100 (209)
Q Consensus 30 s~s~RagL~FPV~ri~r~Lk~~~~~~ris~~A~VyLaAvLEYL~aEILelAgn~A~~~kk~rItP~hLq~A 100 (209)
-+.+-.| +|..-|.|+++.+. ..|||.++-..+..+||.+..+|+..|...+...+++.++..++.+|
T Consensus 7 ~~d~i~g--I~k~~IrRLaRr~G-vkRIS~~~y~elr~vle~~l~~I~rdav~~a~ha~RKTV~~~DV~~a 74 (74)
T smart00417 7 LRDNIQG--ITKPAIRRLARRGG-VKRISGLIYDETRNVLKSFLENVVRDAVTYTEHARRKTVTAMDVVYA 74 (74)
T ss_pred HHhhhcC--CCHHHHHHHHHHcC-cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHheeC
Confidence 3444456 55667999999974 68999999999999999999999999999999999999999988653
No 38
>cd07981 TAF12 TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and are involved in forming the TFIID complex. TFIID is one of the seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs function such as serving as activator-bind
Probab=96.63 E-value=0.0055 Score=43.97 Aligned_cols=65 Identities=17% Similarity=0.234 Sum_probs=58.8
Q ss_pred cChhhHHHHHhhCCccccccCCchhHHHHHHHHHHHHHHHHHhhhhcccCCcccchhhhHHHhhc
Q psy5184 39 FPVSRIQRYLKRGNYSERIGIGASVFLAATLEYLVAEILELAGNAASDNKKSRITPRYLMLAIKN 103 (209)
Q Consensus 39 FPV~ri~r~Lk~~~~~~ris~~A~VyLaAvLEYL~aEILelAgn~A~~~kk~rItP~hLq~AV~n 103 (209)
++-..+..++++-.-..|++.+|-..|..+.|-++.+|++.|...|+..+++.+.+.++++++.+
T Consensus 2 ~~k~~l~~lv~~id~~~~~~~da~~~l~~~~e~fv~~v~~~a~~lAkHr~~~tv~~~Di~l~l~r 66 (72)
T cd07981 2 LTKRKLQELLKEIDPREQLDPDVEELLLEIADDFVDDVVEDACRLAKHRKSDTLEVKDVQLHLER 66 (72)
T ss_pred CcHHHHHHHHHhhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 34567888888865568999999999999999999999999999999999999999999999987
No 39
>cd08048 TAF11 TATA Binding Protein (TBP) Associated Factor 11 (TAF11) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 11 (TAF11) is one of several TAFs that bind TBP and are involved in forming the Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new, unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAF orthologs and paralogs. Several hypothes
Probab=95.71 E-value=0.03 Score=41.67 Aligned_cols=64 Identities=22% Similarity=0.334 Sum_probs=54.9
Q ss_pred cChhhHHHHHhhCCccccccCCchhHHHHHHHHHHHHHHHHHhhhhcccC---CcccchhhhHHHhhc
Q psy5184 39 FPVSRIQRYLKRGNYSERIGIGASVFLAATLEYLVAEILELAGNAASDNK---KSRITPRYLMLAIKN 103 (209)
Q Consensus 39 FPV~ri~r~Lk~~~~~~ris~~A~VyLaAvLEYL~aEILelAgn~A~~~k---k~rItP~hLq~AV~n 103 (209)
||-..++|++..- ....++....+.++++-.-++.||+|.|...-...+ ...+.|.||+-|...
T Consensus 17 f~k~~iKr~~~~~-~~~~v~~~v~i~v~glaKvFVGeivE~A~~V~~~~~~~~~~Pl~P~HireA~rr 83 (85)
T cd08048 17 FPKAAIKRLIQSV-TGQSVSQNVVIAVAGIAKVFVGEIVEEARDVQEEWGEANTGPLQPRHLREAYRR 83 (85)
T ss_pred ccHHHHHHHHHHH-cCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcHHHHHHHHH
Confidence 7778899999874 458999999999999999999999999988855543 478999999998764
No 40
>PTZ00463 histone H2B; Provisional
Probab=94.93 E-value=0.086 Score=41.49 Aligned_cols=61 Identities=16% Similarity=0.129 Sum_probs=49.0
Q ss_pred hHHHHHhhCCccccccCCchhHHHHHHHHHHHHHHHHHhhhhcccCCcccchhhhHHHhhc
Q psy5184 43 RIQRYLKRGNYSERIGIGASVFLAATLEYLVAEILELAGNAASDNKKSRITPRYLMLAIKN 103 (209)
Q Consensus 43 ri~r~Lk~~~~~~ris~~A~VyLaAvLEYL~aEILelAgn~A~~~kk~rItP~hLq~AV~n 103 (209)
.|++.|++-....-|+..|.-.|...+.=+...|-..|.+.++-+++..|++++||.||+-
T Consensus 33 YI~KVLKqVhPd~gIS~kaM~ImnSfvnDifErIA~EAs~La~~nkr~TltsrEIQtAvrL 93 (117)
T PTZ00463 33 YIFKVLKQVHPDTGISRKSMNIMNSFLVDTFEKIATEASRLCKYTRRDTLSSREIQTAIRL 93 (117)
T ss_pred HHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHhh
Confidence 5899999865555787777777777777777777777777788899999999999999983
No 41
>PLN00158 histone H2B; Provisional
Probab=94.50 E-value=0.13 Score=40.42 Aligned_cols=62 Identities=24% Similarity=0.239 Sum_probs=52.4
Q ss_pred hhHHHHHhhCCccccccCCchhHHHHHHHHHHHHHHHHHhhhhcccCCcccchhhhHHHhhc
Q psy5184 42 SRIQRYLKRGNYSERIGIGASVFLAATLEYLVAEILELAGNAASDNKKSRITPRYLMLAIKN 103 (209)
Q Consensus 42 ~ri~r~Lk~~~~~~ris~~A~VyLaAvLEYL~aEILelAgn~A~~~kk~rItP~hLq~AV~n 103 (209)
..|++.|++-....-|+..|.-.|...+..+...|-..|...++-+++..|++++||.||+-
T Consensus 31 ~YI~kVLKQVhPd~gIS~kaM~ImnSfvnDiferIA~EAs~La~~nkr~TltsrEIqtAvrL 92 (116)
T PLN00158 31 IYIYKVLKQVHPDTGISSKAMSIMNSFINDIFEKIATEAGKLARYNKKPTVTSREIQTAVRL 92 (116)
T ss_pred HHHHHHHHHhCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcCCHHHHHHHHHH
Confidence 36999999865556788888888888888888888888888899999999999999999873
No 42
>KOG3219|consensus
Probab=94.42 E-value=0.044 Score=46.64 Aligned_cols=66 Identities=15% Similarity=0.286 Sum_probs=55.8
Q ss_pred cccChhhHHHHHhhCCccccccCCchhHHHHHHHHHHHHHHHHHhhhhccc-CCcccchhhhHHHhhc
Q psy5184 37 IVFPVSRIQRYLKRGNYSERIGIGASVFLAATLEYLVAEILELAGNAASDN-KKSRITPRYLMLAIKN 103 (209)
Q Consensus 37 L~FPV~ri~r~Lk~~~~~~ris~~A~VyLaAvLEYL~aEILelAgn~A~~~-kk~rItP~hLq~AV~n 103 (209)
..||-+.|+++|..- ...-|+..+.++++++=.-|+.||+|.|..+.... ....+.|.||.-|+++
T Consensus 111 s~f~Ka~iKkL~~~i-tg~~v~~nv~Ia~~GiaKvFVGEvVEeAl~V~~~~~e~~PLqP~HIREA~rr 177 (195)
T KOG3219|consen 111 SAFPKAQIKKLMSSI-TGQSVSENVAIAMAGIAKVFVGEVVEEALDVREEWGESGPLQPKHIREAYRR 177 (195)
T ss_pred hcCCHHHHHHHHHHH-hCCccCcceeeeecchhhHhHHHHHHHHHHHHHHhccCCCCCcHHHHHHHHH
Confidence 349999999999984 23349999999999999999999999998886543 3557999999999886
No 43
>COG5247 BUR6 Class 2 transcription repressor NC2, alpha subunit (DRAP1 homolog) [Transcription]
Probab=94.40 E-value=0.0071 Score=46.53 Aligned_cols=77 Identities=26% Similarity=0.306 Sum_probs=61.7
Q ss_pred CCcccchhhhHHHhhccHHHHhhhcCceecCCCCCCccccccccccccccccccccccccccccccccccccchhhhccC
Q psy5184 88 KKSRITPRYLMLAIKNDEELAKLLCGVTIAQGGVLPHIEPVLLTKKTNEYYIQQEYDIFTASDNKKSRITPRYLMLAIKN 167 (209)
Q Consensus 88 kk~rItP~hLq~AV~nD~EL~~ll~~~~ia~ggv~P~i~~~lL~~~~~~~~~~lelA~~~a~~~~k~rItPrhl~lAi~n 167 (209)
.++|+-++.|..-+..|+++-.. |.+.|+|..-.||.-..+ |.-+.++.|+..+.+|||-+||-.|+.+
T Consensus 20 ~ktrFP~ar~KkIMQ~deDiGKV--------~q~tPVIaskalE~Fl~~---iv~~s~k~aR~~~skR~t~e~lk~a~~s 88 (113)
T COG5247 20 KKTRFPIARLKKIMQLDEDIGKV--------GQSTPVIASKALEMFLTE---IVGLSLKEARKKSSKRMTSEFLKRATES 88 (113)
T ss_pred hhhcCCHHHHHHHHHhhhhhhhh--------hhcchHHHHHHHHHHHHH---HHHHHHHHHHhccchhhHHHHHHHHHhh
Confidence 35677778888777777766522 467899988888776666 6677899999999999999999999999
Q ss_pred hHHHhhhh
Q psy5184 168 DEELAKLL 175 (209)
Q Consensus 168 deeL~~L~ 175 (209)
||.++=|=
T Consensus 89 dekFdFL~ 96 (113)
T COG5247 89 DEKFDFLK 96 (113)
T ss_pred hHHHHHHH
Confidence 99998543
No 44
>PF04719 TAFII28: hTAFII28-like protein conserved region; InterPro: IPR006809 The general transcription factor, TFIID, consists of the TATA-binding protein (TBP) associated with a series of TBP-associated factors (TAFs) that together participate in the assembly of the transcription preinitiation complex. The conserved region is found at the C terminus of most member proteins. The crystal structure of hTAFII28 with hTAFII18 shows that this region is involved in the binding of these two subunits. The conserved region contains four alpha helices and three loops arranged as in histone H3 [, ].; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005634 nucleus; PDB: 1BH9_B 1BH8_B.
Probab=93.95 E-value=0.075 Score=40.06 Aligned_cols=64 Identities=17% Similarity=0.280 Sum_probs=46.6
Q ss_pred cChhhHHHHHhhCCcc-ccccCCchhHHHHHHHHHHHHHHHHHhhhhccc-CCcccchhhhHHHhhc
Q psy5184 39 FPVSRIQRYLKRGNYS-ERIGIGASVFLAATLEYLVAEILELAGNAASDN-KKSRITPRYLMLAIKN 103 (209)
Q Consensus 39 FPV~ri~r~Lk~~~~~-~ris~~A~VyLaAvLEYL~aEILelAgn~A~~~-kk~rItP~hLq~AV~n 103 (209)
||=+-|++++..- .. +-|+....+.++++--.|+.||+|.|....... ....|.|.||.-|..+
T Consensus 24 ~~k~~ikkli~~~-~~~qsv~~~v~i~v~g~aKvFVGEiVE~A~~Vq~~~~~~~pl~P~hlreA~rr 89 (90)
T PF04719_consen 24 FNKAAIKKLINQV-LGNQSVSQNVVIAVAGIAKVFVGEIVEEARDVQEEWGETGPLQPDHLREAYRR 89 (90)
T ss_dssp --HHHHHHHHHHH-HS-S---HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--SS--HHHHHHHHHH
T ss_pred CCHHHHHHHHHHH-cCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHh
Confidence 8888899999983 34 689999999999999999999999998885543 3448999999988654
No 45
>cd07979 TAF9 TATA Binding Protein (TBP) Associated Factor 9 (TAF9) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 9 (TAF9) is one of several TAFs that bind TBP and are involved in forming the TFIID complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. The TFIID complex is composed of the TBP and at least 13 TAFs. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new, unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAFs orthologs and paralogs. Human TAF9 has a paralogue gene (TAF9L) whi
Probab=93.56 E-value=0.17 Score=39.63 Aligned_cols=60 Identities=18% Similarity=0.066 Sum_probs=54.1
Q ss_pred hHHHHHhhCCccccccCCchhHHHHHHHHHHHHHHHHHhhhhcccCCcccchhhhHHHhhc
Q psy5184 43 RIQRYLKRGNYSERIGIGASVFLAATLEYLVAEILELAGNAASDNKKSRITPRYLMLAIKN 103 (209)
Q Consensus 43 ri~r~Lk~~~~~~ris~~A~VyLaAvLEYL~aEILelAgn~A~~~kk~rItP~hLq~AV~n 103 (209)
-|+++|++.. ..+++..++..|.-.++-.+.+|+.-|...|+..+++.|+..++.+|+..
T Consensus 6 ~v~~iLk~~G-v~~~~~~v~~~Lle~~~ry~~~il~dA~~~a~hA~r~tV~~eDV~lAi~~ 65 (117)
T cd07979 6 VIAAILKSMG-ITEYEPRVINQLLEFAYRYTTDVLDDAKVYSEHAGKANIDADDVKLAIQS 65 (117)
T ss_pred HHHHHHHHCC-CCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 4889999852 46889999999999999999999999999999999999999999999986
No 46
>smart00427 H2B Histone H2B.
Probab=93.15 E-value=0.26 Score=37.10 Aligned_cols=60 Identities=23% Similarity=0.232 Sum_probs=51.2
Q ss_pred hHHHHHhhCCccccccCCchhHHHHHHHHHHHHHHHHHhhhhcccCCcccchhhhHHHhh
Q psy5184 43 RIQRYLKRGNYSERIGIGASVFLAATLEYLVAEILELAGNAASDNKKSRITPRYLMLAIK 102 (209)
Q Consensus 43 ri~r~Lk~~~~~~ris~~A~VyLaAvLEYL~aEILelAgn~A~~~kk~rItP~hLq~AV~ 102 (209)
.|+|.|++-....-|+..|.-.+...+..+...|-..|..-++-++++.|++++||.||+
T Consensus 6 Yi~kvLKqVhpd~giS~kam~imnSfvnDiferIa~EAs~L~~~nkr~TltsreIqtAvr 65 (89)
T smart00427 6 YIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASKLARYNKKSTLSSREIQTAVR 65 (89)
T ss_pred HHHHHHHHhCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcCCHHHHHHHHH
Confidence 588889886555578888888888888888888888888888999999999999999987
No 47
>PF02969 TAF: TATA box binding protein associated factor (TAF); InterPro: IPR004823 The TATA box binding protein associated factor (TAF) is part of the transcription initiation factor TFIID multimeric protein complex. TFIID plays a central role in mediating promoter responses to various activators and repressors. It binds tightly to TAFII-250 and directly interacts with TAFII-40. TFIID is composed of TATA binding protein (TBP)and a number of TBP-associated factors (TAFS). TAF proteins adopt a histone-like fold.; GO: 0006352 transcription initiation, DNA-dependent, 0005634 nucleus; PDB: 1TAF_B.
Probab=92.44 E-value=0.36 Score=34.29 Aligned_cols=64 Identities=20% Similarity=0.263 Sum_probs=47.7
Q ss_pred ccChhhHHHHHhhCCccccccCCchhHHHHHHHHHHHHHHHHHhhhhcccCCcccchhhhHHHhh
Q psy5184 38 VFPVSRIQRYLKRGNYSERIGIGASVFLAATLEYLVAEILELAGNAASDNKKSRITPRYLMLAIK 102 (209)
Q Consensus 38 ~FPV~ri~r~Lk~~~~~~ris~~A~VyLaAvLEYL~aEILelAgn~A~~~kk~rItP~hLq~AV~ 102 (209)
.||..-|+.+-..-.. .-++..+.-.|+-=+||-+.||++-|.+..+..++++.++.|+..|+.
T Consensus 3 ~~~~esvk~iAes~Gi-~~l~de~a~~La~dveyrlreiiq~a~kfm~hskR~~Lt~~Di~~ALr 66 (66)
T PF02969_consen 3 VFSQESVKDIAESLGI-SNLSDEAAKALAEDVEYRLREIIQEALKFMRHSKRTKLTTDDINSALR 66 (66)
T ss_dssp ---HHHHHHHHHHTT----B-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SSB-HHHHHHHH-
T ss_pred cCCHHHHHHHHHHcCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHhC
Confidence 4677777766665332 368889999999999999999999999999999999999999998863
No 48
>smart00428 H3 Histone H3.
Probab=90.90 E-value=0.42 Score=36.99 Aligned_cols=68 Identities=19% Similarity=0.280 Sum_probs=56.7
Q ss_pred cccccChhhHHHHHhh--CCc----cccccCCchhHHHHHHHHHHHHHHHHHhhhhcccCCcccchhhhHHHhh
Q psy5184 35 ANIVFPVSRIQRYLKR--GNY----SERIGIGASVFLAATLEYLVAEILELAGNAASDNKKSRITPRYLMLAIK 102 (209)
Q Consensus 35 agL~FPV~ri~r~Lk~--~~~----~~ris~~A~VyLaAvLEYL~aEILelAgn~A~~~kk~rItP~hLq~AV~ 102 (209)
..|.+|-.-+.|+.++ ..+ ..|++.+|...|-.+.|..+.+++|-|...|...++..++|.+++++..
T Consensus 26 t~lLI~k~pF~RLVREI~~~~~~~~~~R~~~~Al~aLQeasE~ylv~lfeda~~~a~HAkRvTl~~kDi~La~r 99 (105)
T smart00428 26 TDLLIRKAPFQRLVREIAQKFTTGVDLRFQSSAIMALQEAAEAYLVGLFEDTNLLAIHAKRVTIMPKDIQLARR 99 (105)
T ss_pred cccccccccHHHHHHHHHHHcCCCCCceeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccCcHhhHHHHHH
Confidence 4677777777777765 112 3499999999999999999999999999889889999999999998854
No 49
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=90.84 E-value=0.35 Score=44.26 Aligned_cols=58 Identities=19% Similarity=0.238 Sum_probs=50.6
Q ss_pred HHHHHhhCCccccccCCchhHHHHHHHHHHHHHHHHHhhhhcccCCcccchhhhHHHhh
Q psy5184 44 IQRYLKRGNYSERIGIGASVFLAATLEYLVAEILELAGNAASDNKKSRITPRYLMLAIK 102 (209)
Q Consensus 44 i~r~Lk~~~~~~ris~~A~VyLaAvLEYL~aEILelAgn~A~~~kk~rItP~hLq~AV~ 102 (209)
|+-+.+.- -..|++.+|...|+..+||...+|++.|.+.++..++++++..|+..|+.
T Consensus 5 i~~ia~~~-Gi~~~~~~a~~~La~~~e~~~~~i~~~A~k~~~hskR~~l~~~Di~~Al~ 62 (343)
T cd08050 5 IKLIAESL-GIDSLSDEVAQLLAEDVEYRLREIIQEAAKFMRHSKRRKLTTSDVNHALR 62 (343)
T ss_pred HHHHHHHc-CCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHH
Confidence 44444442 24699999999999999999999999999999999999999999999987
No 50
>KOG1659|consensus
Probab=90.20 E-value=0.073 Score=45.96 Aligned_cols=78 Identities=17% Similarity=0.224 Sum_probs=61.3
Q ss_pred CCcccchhhhHHHhhccHHHHhhhcCceecCCCCCCccccccccccccccccccccccccccccccccccccchhhhccC
Q psy5184 88 KKSRITPRYLMLAIKNDEELAKLLCGVTIAQGGVLPHIEPVLLTKKTNEYYIQQEYDIFTASDNKKSRITPRYLMLAIKN 167 (209)
Q Consensus 88 kk~rItP~hLq~AV~nD~EL~~ll~~~~ia~ggv~P~i~~~lL~~~~~~~~~~lelA~~~a~~~~k~rItPrhl~lAi~n 167 (209)
-..|+.|..|.--+..||++-++-. .+|+|..-.||.-... ++..+.++++..+-+++||.||-.+|.|
T Consensus 10 ~~trfp~aRiKKIMQ~dEdIGKvaq--------avPViisralElFl~~---l~~~t~~~t~~~~aKt~s~~hlkq~v~~ 78 (224)
T KOG1659|consen 10 YKTRFPPARIKKIMQSDEDIGKVAQ--------AVPVIISRALELFLES---LLQKTLEITRSRGAKTVSSSHLKQAVES 78 (224)
T ss_pred hhccCCHHHHHHHHhhhhhhhhhhh--------hhhhHHHHHHHHHHHH---HHHHHHHHHHhcCccccCHHHHHHHHhc
Confidence 4568999999999999999875543 4777766656554444 5666888999999999999999999999
Q ss_pred hHHHhhhhcc
Q psy5184 168 DEELAKLLCG 177 (209)
Q Consensus 168 deeL~~L~~~ 177 (209)
|+.++ +|++
T Consensus 79 ~~~Fd-FLk~ 87 (224)
T KOG1659|consen 79 DPKFD-FLKE 87 (224)
T ss_pred cchhH-HHHH
Confidence 99887 4444
No 51
>smart00576 BTP Bromodomain transcription factors and PHD domain containing proteins. subdomain of archael histone-like transcription factors
Probab=87.94 E-value=1.5 Score=31.43 Aligned_cols=59 Identities=17% Similarity=0.147 Sum_probs=50.3
Q ss_pred HHHHHhhCCccccccCCchhHHHHHHHHHHHHHHHHHhhhhcccCCcccchhhhHHHhhc
Q psy5184 44 IQRYLKRGNYSERIGIGASVFLAATLEYLVAEILELAGNAASDNKKSRITPRYLMLAIKN 103 (209)
Q Consensus 44 i~r~Lk~~~~~~ris~~A~VyLaAvLEYL~aEILelAgn~A~~~kk~rItP~hLq~AV~n 103 (209)
|-++|+... ..+++.+|.-.|+-++|-.+.+|.+.+-+.+...+++..++.++.+|+.+
T Consensus 12 Vaqil~~~G-f~~~~~sale~ltdi~~~yl~~l~~~~~~~a~~agR~~~~~~Dv~~Al~~ 70 (77)
T smart00576 12 VAQILESAG-FDSFQESALETLTDILQSYIQELGRTAHSYAELAGRTEPNLGDVVLALEN 70 (77)
T ss_pred HHHHHHHcC-ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 345566643 36999999999999999999999999999998899999999999998865
No 52
>PF09415 CENP-X: CENP-S associating Centromere protein X; InterPro: IPR018552 Centromere protein X (CENP-X) is a component of the CENP-S complex. The CENP-S complex is composed of at least of CENP-S and CENP-X and is essential for the stable assembly of the outer kinetchore []. CENP-X is also a DNA-binding component of the Fanconi anemia (FA) core complex involved in DNA damage repair and genome maintenance. The FA complex is composed of CENPS, FANCA, FANCB, FANCC, FANCE, FANCF, FANCG, FANCL/PHF9, FANCM, FAAP24 and CENPX. Interacts with CENPS, FANCM and FAAP24 [, ].; PDB: 4DRB_L 4DRA_H 3V9R_D.
Probab=87.07 E-value=2.2 Score=30.74 Aligned_cols=61 Identities=21% Similarity=0.187 Sum_probs=47.0
Q ss_pred ChhhHHHHHhhC--CccccccCCchhHHHHHHHHHHHHHHHHHhhhhcccCCcc-cchhhhHHH
Q psy5184 40 PVSRIQRYLKRG--NYSERIGIGASVFLAATLEYLVAEILELAGNAASDNKKSR-ITPRYLMLA 100 (209)
Q Consensus 40 PV~ri~r~Lk~~--~~~~ris~~A~VyLaAvLEYL~aEILelAgn~A~~~kk~r-ItP~hLq~A 100 (209)
|..-|.|+|+.. ...-||+.+|---++..|+-|+.|-+-.|...+.+.+... +...||+-.
T Consensus 1 p~~li~rll~~~f~~~~tkIs~dal~l~~eyl~iFV~EAv~Ra~~~a~~e~~~~~le~e~LEki 64 (72)
T PF09415_consen 1 PPELIARLLHEHFKDDKTKISKDALKLSAEYLRIFVREAVARAAEQAEAEGDEGFLEVEHLEKI 64 (72)
T ss_dssp -CHHHHHHHCTTSSSTT-EE-CCCHHHHHHHHHHHHHHHHHHHHHHHHHTT-SSEE-HHHHHHH
T ss_pred ChHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 445577888752 2334999999999999999999999999999999988888 999998863
No 53
>PF03847 TFIID_20kDa: Transcription initiation factor TFIID subunit A; InterPro: IPR003228 Human transcription initiation factor TFIID is composed of the TATA-binding polypeptide (TBP) and at least 13 TBP-associated factors (TAFs) that collectively or individually are involved in activator-dependent transcription [].; GO: 0006352 transcription initiation, DNA-dependent, 0005669 transcription factor TFIID complex; PDB: 1H3O_B.
Probab=86.31 E-value=1.4 Score=31.33 Aligned_cols=61 Identities=16% Similarity=0.274 Sum_probs=48.5
Q ss_pred hHHHHHhhCCccccccCCchhHHHHHHHHHHHHHHHHHhhhhcccCCcccchhhhHHHhhc
Q psy5184 43 RIQRYLKRGNYSERIGIGASVFLAATLEYLVAEILELAGNAASDNKKSRITPRYLMLAIKN 103 (209)
Q Consensus 43 ri~r~Lk~~~~~~ris~~A~VyLaAvLEYL~aEILelAgn~A~~~kk~rItP~hLq~AV~n 103 (209)
++..++++-.-...+...+--.|.-+-+=|+..|++.|+..|+..+...+...++++...+
T Consensus 4 ~l~~Lv~~iDp~~~ld~~vee~Ll~laddFv~~v~~~ac~lAKhR~s~tle~~Dv~~~Ler 64 (68)
T PF03847_consen 4 KLQELVKQIDPNEKLDPDVEELLLELADDFVDDVVSFACRLAKHRKSSTLEVKDVQLHLER 64 (68)
T ss_dssp HHHHHHHCC-SS----HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SEE-HHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHh
Confidence 5677788765567889999999999999999999999999999999999999999998876
No 54
>PF15630 CENP-S: Kinetochore component CENP-S; PDB: 4DRA_C 4DRB_H 3V9R_C.
Probab=84.31 E-value=2.5 Score=30.75 Aligned_cols=48 Identities=23% Similarity=0.266 Sum_probs=37.2
Q ss_pred CchhHHHHHHHHHHHHHHHHHhhh---hcccCCcccchhhhHHHhhccHHH
Q psy5184 60 GASVFLAATLEYLVAEILELAGNA---ASDNKKSRITPRYLMLAIKNDEEL 107 (209)
Q Consensus 60 ~A~VyLaAvLEYL~aEILelAgn~---A~~~kk~rItP~hLq~AV~nD~EL 107 (209)
-+|-|++|+.|-....+-.+|..- |+.-+++.|++.++.+..++++.|
T Consensus 26 ~s~~~i~al~ELv~~q~~~~a~DLe~FAkHA~R~tI~~dDV~Ll~Rrn~~L 76 (76)
T PF15630_consen 26 VSPQFIAALTELVYKQLENLAKDLEAFAKHAGRSTINMDDVKLLARRNPSL 76 (76)
T ss_dssp E-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SEE-HHHHHHHTTT-HHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeecHHHHHHHhhcCCCC
Confidence 588999999999888888777544 677799999999999999998765
No 55
>CHL00095 clpC Clp protease ATP binding subunit
Probab=84.20 E-value=0.19 Score=50.85 Aligned_cols=103 Identities=17% Similarity=0.161 Sum_probs=64.0
Q ss_pred HHHHHHHhhhhcccCCcccchhhhHHHhhccHH--HHhhhcCceec---------C-CCCCCcccccccccccccccccc
Q psy5184 74 AEILELAGNAASDNKKSRITPRYLMLAIKNDEE--LAKLLCGVTIA---------Q-GGVLPHIEPVLLTKKTNEYYIQQ 141 (209)
Q Consensus 74 aEILelAgn~A~~~kk~rItP~hLq~AV~nD~E--L~~ll~~~~ia---------~-ggv~P~i~~~lL~~~~~~~~~~l 141 (209)
.++|+.|-..|+..+...|+|.||-+++-.+++ ..++|...-+. . -+-.+...+..++ .+.....++
T Consensus 10 ~~vL~~A~~~A~~~~h~~V~~EHLLLaLL~~~~~~a~~iL~~~gid~~~l~~~l~~~l~~~~~~~~~~~~-~S~~~~~vL 88 (821)
T CHL00095 10 IKVIMLSQEEARRLGHNFVGTEQILLGLIGEGTGIAARALKSMGVTLKDARIEVEKIIGRGTGFVAVEIP-FTPRAKRVL 88 (821)
T ss_pred HHHHHHHHHHHHHhCCCcCcHHHHHHHHHhCCCchHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCccccc-cCHHHHHHH
Confidence 467888999999999999999999999876644 33334321110 0 0000000000011 111222377
Q ss_pred ccccccccccccccccccchhhhccChHH--Hhhhhcc
Q psy5184 142 EYDIFTASDNKKSRITPRYLMLAIKNDEE--LAKLLCG 177 (209)
Q Consensus 142 elA~~~a~~~~k~rItPrhl~lAi~ndee--L~~L~~~ 177 (209)
+.|...|...+..-|+|.||.+|+-++++ ...+|..
T Consensus 89 ~~A~~~A~~~~~~~I~~eHLLlALL~~~ds~a~~iL~~ 126 (821)
T CHL00095 89 EMSLEEARDLGHNYIGTEHLLLALLEEGEGVAARVLEN 126 (821)
T ss_pred HHHHHHHHHhCCCcccHHHHHHHHHhCCCchHHHHHHH
Confidence 88888898888899999999999877644 3445543
No 56
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=82.45 E-value=0.26 Score=49.31 Aligned_cols=103 Identities=17% Similarity=0.162 Sum_probs=66.7
Q ss_pred HHHHHHHhhhhcccCCcccchhhhHHHhhccHHHHhhhcCceecC-----------CCCCCcccc---cccccccccccc
Q psy5184 74 AEILELAGNAASDNKKSRITPRYLMLAIKNDEELAKLLCGVTIAQ-----------GGVLPHIEP---VLLTKKTNEYYI 139 (209)
Q Consensus 74 aEILelAgn~A~~~kk~rItP~hLq~AV~nD~EL~~ll~~~~ia~-----------ggv~P~i~~---~lL~~~~~~~~~ 139 (209)
..+|+.|-+.|+..+...|+|.||-+++-.+++...+|+..-+.. +...|.... ..++ .+.....
T Consensus 6 ~~~L~~A~~~A~~~~h~~V~~EHLLlaLL~~~~~~~iL~~~gid~~~l~~~l~~~l~~~~p~~~~~~~~~~~-~S~~lk~ 84 (731)
T TIGR02639 6 ERILDAALEEAKKRRHEFVTLEHILLALLFDSDAIEILEECGGDVEALRKDLEDYLENNLPSITEENEADPE-QTVGVQR 84 (731)
T ss_pred HHHHHHHHHHHHHhCCCcCcHHHHHHHHHcCchHHHHHHHcCCCHHHHHHHHHHHHhhcCCCCCCCCCCCCC-cCHHHHH
Confidence 467788999999999999999999999988766556564321110 101121100 0011 1111223
Q ss_pred ccccccccccccccccccccchhhhccChHH-H-hhhhcc
Q psy5184 140 QQEYDIFTASDNKKSRITPRYLMLAIKNDEE-L-AKLLCG 177 (209)
Q Consensus 140 ~lelA~~~a~~~~k~rItPrhl~lAi~ndee-L-~~L~~~ 177 (209)
+|+.|...|...+...|++.||.+|+-.+++ . .++|..
T Consensus 85 vL~~A~~~A~~~g~~~I~teHLLLALl~~~~~~a~~lL~~ 124 (731)
T TIGR02639 85 VLQRALLHVKSAGKKEIGIGDILVALFDEEDSHASYFLKS 124 (731)
T ss_pred HHHHHHHHHHHcCCCccCHHHHHHHHhcCcccHHHHHHHH
Confidence 7888999999999999999999999876533 2 335543
No 57
>PF02861 Clp_N: Clp amino terminal domain; InterPro: IPR004176 This short domain is found in one or two copies at the amino terminus of ClpA and ClpB proteins from bacteria and eukaryotes. The function of these domains is uncertain but they may form a protein binding site []. The proteins are thought to be subunits of ATP-dependent proteases which act as chaperones to target the proteases to substrates.; GO: 0019538 protein metabolic process; PDB: 3FH2_A 3ZRJ_A 3ZRI_A 1QVR_C 3FES_C 2Y1R_F 3PXG_D 2Y1Q_A 3PXI_C 2K77_A ....
Probab=79.54 E-value=0.33 Score=31.43 Aligned_cols=33 Identities=27% Similarity=0.309 Sum_probs=25.8
Q ss_pred cccccccccccccccchhhhccChH--HHhhhhcc
Q psy5184 145 IFTASDNKKSRITPRYLMLAIKNDE--ELAKLLCG 177 (209)
Q Consensus 145 ~~~a~~~~k~rItPrhl~lAi~nde--eL~~L~~~ 177 (209)
-+.|...+-..|+|+||.+|+-+++ ...++|+.
T Consensus 2 ~~~A~~~~~~~i~~eHlL~all~~~~~~~~~il~~ 36 (53)
T PF02861_consen 2 QELARERGHQYISPEHLLLALLEDPDSIAARILKK 36 (53)
T ss_dssp HHHHHHTTBSSE-HHHHHHHHHHHTTSHHHHHHHH
T ss_pred HHHHHHcCCCcccHHHHHHHHHhhhhHHHHHHHHH
Confidence 3567788889999999999988766 77777764
No 58
>KOG1744|consensus
Probab=79.47 E-value=10 Score=30.38 Aligned_cols=69 Identities=23% Similarity=0.184 Sum_probs=47.4
Q ss_pred CCcccccccChhhHHHHHhhCCccccccCCchhHHHHHHHHHHHHHHHHHhhhhcccCCcccchhhhHHHhh
Q psy5184 31 RSAKANIVFPVSRIQRYLKRGNYSERIGIGASVFLAATLEYLVAEILELAGNAASDNKKSRITPRYLMLAIK 102 (209)
Q Consensus 31 ~s~RagL~FPV~ri~r~Lk~~~~~~ris~~A~VyLaAvLEYL~aEILelAgn~A~~~kk~rItP~hLq~AV~ 102 (209)
....-+..++|-| .|++-...-=|+.-+.-.+-+.+--+...|...|+..|+-++++.|+.+++|.+++
T Consensus 33 ~~~~e~~s~yv~k---vlk~Vhpd~gis~~a~~vmnsf~ndife~iA~ea~rla~y~krstisSreiqta~r 101 (127)
T KOG1744|consen 33 TRRKESYSEYVYK---VLKQVHPDLGISSKAMGVMNSFVNDIFERIASEAGRLAHYNKRSTISSREIQTAVR 101 (127)
T ss_pred ccccCceeeehhh---hhhcccCCCCcCHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCcccHHHHHHHHH
Confidence 3334445555544 55552222236666666666666666778888889999999999999999999887
No 59
>PF04604 L_biotic_typeA: Type-A lantibiotic; InterPro: IPR007682 Lantibiotics are antibiotic peptides distinguished by the presence of the rare thioether amino acids lanthionine and/or methyllanthionine. They are produced by Gram-positive bacteria as gene-encoded precursor peptides and undergo post-translational modification to generate the mature peptide. Based on their structural and functional features lantibiotics are currently divided into two major groups: the flexible amphiphilic type-A and the rather rigid and globular type-B. Type-A lantibiotics act primarily by pore formation in the bacterial membrane by a mechanism involving the interaction with specific docking molecules such as the membrane precursor lipid II [].; GO: 0019748 secondary metabolic process, 0005576 extracellular region
Probab=78.37 E-value=1.3 Score=30.00 Aligned_cols=24 Identities=38% Similarity=0.560 Sum_probs=19.3
Q ss_pred cChHHHhhhhccccccCccccCCCCcc
Q psy5184 166 KNDEELAKLLCGVTIAQGGVLPHIEPV 192 (209)
Q Consensus 166 ~ndeeL~~L~~~~tia~ggv~p~i~~~ 192 (209)
-.|+||++++++. .+||++.|...
T Consensus 15 vs~eELd~ilGg~---g~Gv~~Tis~e 38 (51)
T PF04604_consen 15 VSDEELDQILGGA---GNGVIKTISHE 38 (51)
T ss_pred cCHHHHHHHhCCC---CCCceeecccc
Confidence 3699999999874 78999987543
No 60
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=77.72 E-value=0.48 Score=47.93 Aligned_cols=98 Identities=17% Similarity=0.217 Sum_probs=63.9
Q ss_pred HHHHHHHHhhhhcccCCcccchhhhHHHhhccHHHHhhhcCceecC-----------CCCCCccccccc---cccccccc
Q psy5184 73 VAEILELAGNAASDNKKSRITPRYLMLAIKNDEELAKLLCGVTIAQ-----------GGVLPHIEPVLL---TKKTNEYY 138 (209)
Q Consensus 73 ~aEILelAgn~A~~~kk~rItP~hLq~AV~nD~EL~~ll~~~~ia~-----------ggv~P~i~~~lL---~~~~~~~~ 138 (209)
+.++|+.|.+.|...+...+++.||-+++-.+.++..+|....+.. +.-.|.+-..-. ..-.....
T Consensus 6 ~~~~l~~a~~~a~~~~~~~~~~~h~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (758)
T PRK11034 6 LELSLNMAFARAREHRHEFMTVEHLLLALLSNPSAREALEACSVDLVALRQELEAFIEQTTPVLPASEEERDTQPTLSFQ 85 (758)
T ss_pred HHHHHHHHHHHHHHcCCCcchHHHHHHHHHcChhHHHHHHHcCCCHHHHHHHHHHHHhhcCCcCCCCCCcCCcCCCHHHH
Confidence 4578889999999999999999999999998877776664432211 000010000000 00000112
Q ss_pred cccccccccccccccccccccchhhhccChHH
Q psy5184 139 IQQEYDIFTASDNKKSRITPRYLMLAIKNDEE 170 (209)
Q Consensus 139 ~~lelA~~~a~~~~k~rItPrhl~lAi~ndee 170 (209)
.+++.|...|...+...|++.||.+|+-.+++
T Consensus 86 ~~l~~a~~~~~~~~~~~i~~~~ll~a~~~~~~ 117 (758)
T PRK11034 86 RVLQRAVFHVQSSGRSEVTGANVLVAIFSEQE 117 (758)
T ss_pred HHHHHHHHHHHHcCCCcccHHHHHHHHhcCCc
Confidence 26777888888888899999999999877644
No 61
>KOG0869|consensus
Probab=77.32 E-value=5.8 Score=32.95 Aligned_cols=66 Identities=15% Similarity=0.264 Sum_probs=50.3
Q ss_pred ccChhhHHHHHhhCCcc-ccccCCchhHHHHHHHHHHHHHHHHHhhhhcccCCcccchhhhHHHhhc
Q psy5184 38 VFPVSRIQRYLKRGNYS-ERIGIGASVFLAATLEYLVAEILELAGNAASDNKKSRITPRYLMLAIKN 103 (209)
Q Consensus 38 ~FPV~ri~r~Lk~~~~~-~ris~~A~VyLaAvLEYL~aEILelAgn~A~~~kk~rItP~hLq~AV~n 103 (209)
.+|+.-|-|+||+.-.. .+|+.+|--.+--|+--|++=|---|..-|...+++.|+-.+|-+|+..
T Consensus 32 ~LPIANV~RIMK~~lP~naKIsKDAKE~vQECVSEfISFvT~EAsekC~~EkRKTIngdDllwAm~t 98 (168)
T KOG0869|consen 32 FLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFVTGEASEKCQREKRKTINGDDLLWAMST 98 (168)
T ss_pred hccHHHHHHHHHhcCCcccccchHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCcccHHHHHHHHHH
Confidence 48999999999996444 5999999887655554444555555555567778899999999999985
No 62
>KOG0871|consensus
Probab=74.55 E-value=8.5 Score=31.69 Aligned_cols=69 Identities=17% Similarity=0.314 Sum_probs=52.4
Q ss_pred ccccccChhhHHHHHhhCCc-cccccCCchhH-HHHHHHHHHHHHHHHHhhhhcccCCcccchhhhHHHhhc
Q psy5184 34 KANIVFPVSRIQRYLKRGNY-SERIGIGASVF-LAATLEYLVAEILELAGNAASDNKKSRITPRYLMLAIKN 103 (209)
Q Consensus 34 RagL~FPV~ri~r~Lk~~~~-~~ris~~A~Vy-LaAvLEYL~aEILelAgn~A~~~kk~rItP~hLq~AV~n 103 (209)
.-.+.+|-.-|.+++++.-. ..||...+--. +..|+|| +.-|-..|..+|....++.|.|.|+.-|..+
T Consensus 8 dde~sLPkAtv~KmIke~lP~d~rvakeareliincCvEF-I~liSsEAneic~~e~KKTIa~EHV~KALe~ 78 (156)
T KOG0871|consen 8 DDELSLPKATVNKMIKEMLPKDVRVAKEARELIINCCVEF-INLISSEANEICNKEAKKTIAPEHVIKALEN 78 (156)
T ss_pred cccccCcHHHHHHHHHHhCCcccccchHHHHHHHHHHHHH-HHHHHHHHHHHHhHHhcccCCHHHHHHHHHH
Confidence 34688999999999999755 35888766655 4555555 4556666767788888899999999999887
No 63
>cd07978 TAF13 The TATA Binding Protein (TBP) Associated Factor 13 (TAF13) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 13 (TAF13) is one of several TAFs that bind TBP and is involved in forming the Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new, unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAFs orthologs and paralogs. Several hy
Probab=73.13 E-value=14 Score=27.79 Aligned_cols=39 Identities=21% Similarity=0.388 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHhhh---hcccCCcccchhhhHHHhhccHH
Q psy5184 67 ATLEYLVAEILELAGNA---ASDNKKSRITPRYLMLAIKNDEE 106 (209)
Q Consensus 67 AvLEYL~aEILelAgn~---A~~~kk~rItP~hLq~AV~nD~E 106 (209)
.+=|.++..|.+++-++ |. .+..++++.++.|.+++|+.
T Consensus 28 llE~iv~~~i~~l~~~a~~~A~-~r~~k~~~eD~~FliR~D~~ 69 (92)
T cd07978 28 LLEDIVVEYIIELCHKAAEVAQ-RRRGKVKVEDLIFLLRKDPK 69 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-cCCCCCCHHHHHHHHhcCHH
Confidence 33344445555555444 44 47778899999999999975
No 64
>PLN00121 histone H3; Provisional
Probab=72.87 E-value=18 Score=29.29 Aligned_cols=67 Identities=19% Similarity=0.220 Sum_probs=54.0
Q ss_pred ccccChhhHHHHHhhC----CccccccCCchhHHHHHHHHHHHHHHHHHhhhhcccCCcccchhhhHHHhh
Q psy5184 36 NIVFPVSRIQRYLKRG----NYSERIGIGASVFLAATLEYLVAEILELAGNAASDNKKSRITPRYLMLAIK 102 (209)
Q Consensus 36 gL~FPV~ri~r~Lk~~----~~~~ris~~A~VyLaAvLEYL~aEILelAgn~A~~~kk~rItP~hLq~AV~ 102 (209)
.|.||-.-|.|++++- ....|+..+|..-|--+-|..+-.++|-+.-.|...++..|.+.|++++..
T Consensus 60 ~lLI~k~pF~RLVREI~~~~~~~~Rf~~~Al~ALQeaaE~yLv~lfed~~lca~HakRVTl~~kD~~L~~r 130 (136)
T PLN00121 60 ELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 130 (136)
T ss_pred ccccccccHHHHHHHHHHHhCccceeeHHHHHHHHHHHHHHHHHHHhhhHHHHHHhcceecchhhHHHHHH
Confidence 6667777777877751 113588888999999999999999999997778788888999999998853
No 65
>PF02269 TFIID-18kDa: Transcription initiation factor IID, 18kD subunit; InterPro: IPR003195 This family includes the Spt3 yeast transcription factors and the 18 kDa subunit from human transcription initiation factor IID (TFIID-18). Determination of the crystal structure reveals an atypical histone fold [].; GO: 0006366 transcription from RNA polymerase II promoter; PDB: 1BH9_A 1BH8_A.
Probab=71.40 E-value=4.3 Score=30.42 Aligned_cols=43 Identities=16% Similarity=0.257 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHh---hhhcccCCcccchhhhHHHhhccHHH
Q psy5184 65 LAATLEYLVAEILELAG---NAASDNKKSRITPRYLMLAIKNDEEL 107 (209)
Q Consensus 65 LaAvLEYL~aEILelAg---n~A~~~kk~rItP~hLq~AV~nD~EL 107 (209)
...+-|+++.+|.++.. +.|...+..+|+..+|-|++++|+.-
T Consensus 25 v~lvE~iv~~~i~~l~~~A~~~a~~rg~~~i~~eDl~F~lR~D~~K 70 (93)
T PF02269_consen 25 VDLVEDIVREYIIELCQEAMEVAQRRGSKKIKVEDLLFLLRKDPKK 70 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccCcCcHHHHHHHHhcCHHH
Confidence 44455566666666554 44666677899999999999999753
No 66
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=71.08 E-value=0.81 Score=46.66 Aligned_cols=103 Identities=22% Similarity=0.213 Sum_probs=64.0
Q ss_pred HHHHHHHHhhhhcccCCcccchhhhHHHhhccHH--HHhhhcCceec--C--------CCCCCcccc--ccccccccccc
Q psy5184 73 VAEILELAGNAASDNKKSRITPRYLMLAIKNDEE--LAKLLCGVTIA--Q--------GGVLPHIEP--VLLTKKTNEYY 138 (209)
Q Consensus 73 ~aEILelAgn~A~~~kk~rItP~hLq~AV~nD~E--L~~ll~~~~ia--~--------ggv~P~i~~--~lL~~~~~~~~ 138 (209)
+..+|+.|-..|+..+...|+|.||-+++-.++. ...+|...-+. . -+-.|.... .-++ -+....
T Consensus 5 a~~vL~~A~~~A~~~~h~~V~~EHLLlaLl~~~~g~a~~iL~~~Gvd~~~l~~~l~~~l~~~~~~~~~~~~~~-~S~~~~ 83 (852)
T TIGR03346 5 FQEALQAAQSLALGRDHQQIEPEHLLKALLDQEGGLARRLLQKAGVNVGALRQALEKELEKLPKVSGPGGQVY-LSPELN 83 (852)
T ss_pred HHHHHHHHHHHHHHcCCCcccHHHHHHHHHhCCccHHHHHHHHcCCCHHHHHHHHHHHhcccccCCCCCCCCC-cCHHHH
Confidence 3567888989999999999999999999877652 34444321111 0 000010000 0011 111112
Q ss_pred cccccccccccccccccccccchhhhccChHHH-hhhhc
Q psy5184 139 IQQEYDIFTASDNKKSRITPRYLMLAIKNDEEL-AKLLC 176 (209)
Q Consensus 139 ~~lelA~~~a~~~~k~rItPrhl~lAi~ndeeL-~~L~~ 176 (209)
.++|.|...|...+...|.+.||.+|+-.+++. .++|.
T Consensus 84 ~vLe~A~~~A~~~g~~~I~teHLLlALl~e~~~a~~iL~ 122 (852)
T TIGR03346 84 RLLNLAEKLAQKRGDEFISSEHLLLALLDDKGTLGKLLK 122 (852)
T ss_pred HHHHHHHHHHHHcCCCcccHHHHHHHHHcCCccHHHHHH
Confidence 378889888888888999999999999776542 34453
No 67
>KOG3467|consensus
Probab=69.90 E-value=8.6 Score=29.04 Aligned_cols=77 Identities=19% Similarity=0.229 Sum_probs=56.4
Q ss_pred cccccCCCCcccccccChhhHHHHHhhCCccccccCCchhHHHHHHHHHHHHHHHHHhhhhcccCCcccchhhhHHHhhc
Q psy5184 24 SNAARRTRSAKANIVFPVSRIQRYLKRGNYSERIGIGASVFLAATLEYLVAEILELAGNAASDNKKSRITPRYLMLAIKN 103 (209)
Q Consensus 24 ~~~~~~s~s~RagL~FPV~ri~r~Lk~~~~~~ris~~A~VyLaAvLEYL~aEILelAgn~A~~~kk~rItP~hLq~AV~n 103 (209)
++.++.-+.+-.|++-|. |.|+-+.+. ..||+...---.-.++.-++.+++..|.-.+...+++.+|.-++-.+..+
T Consensus 17 KrHRK~LsDnIqgitKpa--IRRlARr~G-VkRi~G~~yeE~~~~~k~fl~n~i~~A~~yt~HAKRKTvT~~dvv~~LKR 93 (103)
T KOG3467|consen 17 KRHRKVLRDNIQGITKPA--IRRLARRGG-VKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKR 93 (103)
T ss_pred HHHHHHHHhhccccchHH--HHHHHHhcC-cchhchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhceeeHHHHHHHHHH
Confidence 445556666777888887 888888864 46888765555666776677788888888887788888998887766553
No 68
>PTZ00018 histone H3; Provisional
Probab=69.58 E-value=23 Score=28.63 Aligned_cols=66 Identities=20% Similarity=0.210 Sum_probs=53.8
Q ss_pred ccccChhhHHHHHhhC----CccccccCCchhHHHHHHHHHHHHHHHHHhhhhcccCCcccchhhhHHHh
Q psy5184 36 NIVFPVSRIQRYLKRG----NYSERIGIGASVFLAATLEYLVAEILELAGNAASDNKKSRITPRYLMLAI 101 (209)
Q Consensus 36 gL~FPV~ri~r~Lk~~----~~~~ris~~A~VyLaAvLEYL~aEILelAgn~A~~~kk~rItP~hLq~AV 101 (209)
.|.||-.-|.|++++- ....|+...|..-|--+-|..+..++|-+.-.|...++..|.+.|++++.
T Consensus 60 ~lLI~k~pF~RLVREI~~~~~~~~rf~~~al~aLQeaaE~yLv~lfed~~lca~HakRVTl~~kD~~L~~ 129 (136)
T PTZ00018 60 ELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLAR 129 (136)
T ss_pred hhccccccHHHHHHHHHHHcCCcceeeHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcceecchhhHHHHH
Confidence 5667777777877762 12358888899999999999999999999877888888899999999885
No 69
>PF02291 TFIID-31kDa: Transcription initiation factor IID, 31kD subunit; InterPro: IPR003162 Human transcription initiation factor TFIID is composed of the TATA-binding polypeptide (TBP) and at least 13 TBP-associated factors (TAFs) that collectively or individually are involved in activator-dependent transcription []. TAFII-31 protein is a transcriptional coactivator of the p53 protein [].; GO: 0006352 transcription initiation, DNA-dependent; PDB: 1TAF_A.
Probab=65.09 E-value=22 Score=28.38 Aligned_cols=58 Identities=24% Similarity=0.217 Sum_probs=43.2
Q ss_pred hhHHHHHhhCCccccccCCchhHHHHHHHHH---HHHHHHHHhhhhcccCCcccchhhhHHHhhc
Q psy5184 42 SRIQRYLKRGNYSERIGIGASVFLAATLEYL---VAEILELAGNAASDNKKSRITPRYLMLAIKN 103 (209)
Q Consensus 42 ~ri~r~Lk~~~~~~ris~~A~VyLaAvLEYL---~aEILelAgn~A~~~kk~rItP~hLq~AV~n 103 (209)
--|+.+|++.. |...-|-...-.|||. +.+||+-|-..|...+++.|+..++++||..
T Consensus 16 ~~i~~iL~~~G----v~~yeprVv~qLLEfayRYt~~vL~DA~~ya~hA~~~~i~~~DVrLAi~~ 76 (129)
T PF02291_consen 16 RVIHLILKSMG----VTEYEPRVVNQLLEFAYRYTSDVLEDAQVYADHAGRSTIDADDVRLAIQS 76 (129)
T ss_dssp HHHHHHHHHTT-------B-THHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SSB-HHHHHHHHHH
T ss_pred HHHHHHHHHcC----CcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCChHHHHHHHHH
Confidence 45788888864 5566777777888886 5788999988898889999999999999994
No 70
>KOG1142|consensus
Probab=57.97 E-value=11 Score=33.53 Aligned_cols=66 Identities=11% Similarity=0.206 Sum_probs=58.3
Q ss_pred cChhhHHHHHhhCCccccccCCchhHHHHHHHHHHHHHHHHHhhhhcccCCcccchhhhHHHhhcc
Q psy5184 39 FPVSRIQRYLKRGNYSERIGIGASVFLAATLEYLVAEILELAGNAASDNKKSRITPRYLMLAIKND 104 (209)
Q Consensus 39 FPV~ri~r~Lk~~~~~~ris~~A~VyLaAvLEYL~aEILelAgn~A~~~kk~rItP~hLq~AV~nD 104 (209)
+-.-+++.+|++-.-...|...+--+|.-+-+=|+..|+..|+..|+..++..+..++|+|.+.++
T Consensus 155 l~k~kl~dLvqqId~~~~LD~dVedlLleiADdFV~sii~~sC~LAKHRKsdtlEvrDIqLhLEr~ 220 (258)
T KOG1142|consen 155 LSKRKLDDLVQQIDGTTKLDDDVEDLLLEIADDFVSSIIHRSCKLAKHRKSDTVEVRDIQLHLERN 220 (258)
T ss_pred ccccchhHHHHhhcCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhheeeeeecc
Confidence 445678889988544568889999999999999999999999999999999999999999999985
No 71
>KOG0870|consensus
Probab=55.20 E-value=29 Score=29.06 Aligned_cols=67 Identities=21% Similarity=0.304 Sum_probs=51.2
Q ss_pred ccccChhhHHHHHhhCCccc---cccCCchhHHHHHHHHHHHHHHHHHhhhhcccCCcccchhhhHHHhhc
Q psy5184 36 NIVFPVSRIQRYLKRGNYSE---RIGIGASVFLAATLEYLVAEILELAGNAASDNKKSRITPRYLMLAIKN 103 (209)
Q Consensus 36 gL~FPV~ri~r~Lk~~~~~~---ris~~A~VyLaAvLEYL~aEILelAgn~A~~~kk~rItP~hLq~AV~n 103 (209)
-|-||-+-|-|+.++- +.. -|+..|...++..-=-|+..+..-|.+.|++++++.|++.++--|+..
T Consensus 8 dl~lP~AiI~rlvke~-l~E~~vsisKeA~~Ai~raAtVFv~~Lts~s~e~A~~q~rKt~sadDVl~aL~E 77 (172)
T KOG0870|consen 8 DLNLPNAIITRLVKEV-LPESNVSISKEARLAIARAATVFVIFLTSVSNEIAKDQKRKTISADDVLKALDE 77 (172)
T ss_pred HhhccHHHHHHHHHHh-CccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccHHHHHHHHHH
Confidence 4779999999888762 222 356667666666666667777888999999999999999998877764
No 72
>PF15511 CENP-T: Centromere kinetochore component CENP-T; PDB: 3B0D_T 3B0C_T 3VH5_T 3VH6_T.
Probab=55.13 E-value=13 Score=35.00 Aligned_cols=72 Identities=10% Similarity=0.075 Sum_probs=41.0
Q ss_pred ccccCCCCcccccccChhhHHHHHhhC----Ccc-ccccCCchhHHHHHHHHHHHHHHHHHhhhhcccCCcccchhh
Q psy5184 25 NAARRTRSAKANIVFPVSRIQRYLKRG----NYS-ERIGIGASVFLAATLEYLVAEILELAGNAASDNKKSRITPRY 96 (209)
Q Consensus 25 ~~~~~s~s~RagL~FPV~ri~r~Lk~~----~~~-~ris~~A~VyLaAvLEYL~aEILelAgn~A~~~kk~rItP~h 96 (209)
++++.|+-.-.+-.+|.+-|++++..- .|+ .+|+..|.--|.-|+||+...+-+=-.-+|..-|++.|.+.+
T Consensus 338 k~~k~Skhgi~~P~lP~~~vK~la~~~ak~s~~sK~kiskdal~aleqasdwfFeQl~dDL~aYA~HAgRKTIdesD 414 (414)
T PF15511_consen 338 KQKKVSKHGIPYPSLPPGVVKKLAQHFAKSSGGSKMKISKDALEALEQASDWFFEQLGDDLEAYAKHAGRKTIDESD 414 (414)
T ss_dssp --------------S-HHHHHHHHHHHH-------S-B-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SEE-HHH
T ss_pred cccCCCCCCCCCCCCCccHHHHHHHHHHHhhcccCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCC
Confidence 566777777777889999999988652 344 599999999999999999988877666777778888887653
No 73
>PRK10865 protein disaggregation chaperone; Provisional
Probab=54.52 E-value=2.9 Score=42.85 Aligned_cols=103 Identities=22% Similarity=0.173 Sum_probs=62.1
Q ss_pred HHHHHHHHhhhhcccCCcccchhhhHHHhhccHH--HHhhhcCceecC----------CCCCCccc--cccccccccccc
Q psy5184 73 VAEILELAGNAASDNKKSRITPRYLMLAIKNDEE--LAKLLCGVTIAQ----------GGVLPHIE--PVLLTKKTNEYY 138 (209)
Q Consensus 73 ~aEILelAgn~A~~~kk~rItP~hLq~AV~nD~E--L~~ll~~~~ia~----------ggv~P~i~--~~lL~~~~~~~~ 138 (209)
+.++|+.|-..|...+...+++.||-+++-.++. +..+|....+.. -+-.|..- ..-+ .......
T Consensus 10 ~~~~l~~a~~~a~~~~~~~~~~~hll~~l~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 88 (857)
T PRK10865 10 FQLALADAQSLALGHDNQFIEPLHLMSALLNQEGGSVRPLLTSAGINAGQLRTDINQALSRLPQVEGTGGDV-QPSQDLV 88 (857)
T ss_pred HHHHHHHHHHHHHHcCCCcccHHHHHHHHHhCCccHHHHHHHHcCCCHHHHHHHHHHHHhhCCCCCCCCCCC-CcCHHHH
Confidence 3567788888899999999999999999987653 444443211110 00011000 0000 0111112
Q ss_pred cccccccccccccccccccccchhhhccChHH-Hhhhhc
Q psy5184 139 IQQEYDIFTASDNKKSRITPRYLMLAIKNDEE-LAKLLC 176 (209)
Q Consensus 139 ~~lelA~~~a~~~~k~rItPrhl~lAi~ndee-L~~L~~ 176 (209)
.+++.|...|...+...|++.|+.+|+-.+++ ...+|.
T Consensus 89 ~~l~~a~~~~~~~~~~~i~~~~ll~~~~~~~~~~~~~l~ 127 (857)
T PRK10865 89 RVLNLCDKLAQKRGDNFISSELFVLAALESRGTLADILK 127 (857)
T ss_pred HHHHHHHHHHHHcCCCcccHHHHHHHHHcCcchHHHHHH
Confidence 26777877888888889999999999876643 334454
No 74
>PF12096 DUF3572: Protein of unknown function (DUF3572); InterPro: IPR021955 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 100 amino acids in length.
Probab=53.17 E-value=12 Score=28.08 Aligned_cols=33 Identities=36% Similarity=0.635 Sum_probs=25.8
Q ss_pred hhHHHHHhhCCccc---cccCCchhHHHHHHHHHHH
Q psy5184 42 SRIQRYLKRGNYSE---RIGIGASVFLAATLEYLVA 74 (209)
Q Consensus 42 ~ri~r~Lk~~~~~~---ris~~A~VyLaAvLEYL~a 74 (209)
.++.|+|-...... |-..+-|-||++||+||+.
T Consensus 22 e~l~rFLa~TG~~p~~LR~~a~dp~FL~~VLdFl~~ 57 (88)
T PF12096_consen 22 ERLPRFLALTGLSPDDLRAAAGDPAFLAAVLDFLLM 57 (88)
T ss_pred HHHHHHHHHhCCCHHHHHHHccChHHHHHHHHHHHc
Confidence 46677776644543 7788999999999999984
No 75
>PLN00160 histone H3; Provisional
Probab=50.52 E-value=22 Score=27.20 Aligned_cols=68 Identities=18% Similarity=0.189 Sum_probs=53.5
Q ss_pred cccccChhhHHHHHhhC--Cc---cccccCCchhHHHHHHHHHHHHHHHHHhhhhcccCCcccchhhhHHHhh
Q psy5184 35 ANIVFPVSRIQRYLKRG--NY---SERIGIGASVFLAATLEYLVAEILELAGNAASDNKKSRITPRYLMLAIK 102 (209)
Q Consensus 35 agL~FPV~ri~r~Lk~~--~~---~~ris~~A~VyLaAvLEYL~aEILelAgn~A~~~kk~rItP~hLq~AV~ 102 (209)
..|.+|-.-+.|+.++- .+ ..|..++|..-|--+-|..+-.++|-+.-.|...++..|.|.+++++..
T Consensus 18 t~lLI~k~pF~RLVREI~~~~~~~~~Rfq~~Al~ALQeAsEayLv~lfed~~lca~HakRVTl~~kD~~L~~r 90 (97)
T PLN00160 18 TDLLIRRLPFARLVREIQMEMSREAYRWQGSAILALQEAAEAHLVGLFEDSNLCAIHGKRVTIMPKDMQLARR 90 (97)
T ss_pred hhhhhccccHHHHHHHHHHHcCCCCcEeeHHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccccchhhHHHHHH
Confidence 35667777777777652 11 2588888888888888999999999997778888888999999998854
No 76
>KOG1658|consensus
Probab=49.80 E-value=13 Score=30.73 Aligned_cols=71 Identities=21% Similarity=0.202 Sum_probs=57.9
Q ss_pred cccChhhHHHHHhhCCccccccCCchhH-HHHHHHHHHHHHHHHHhhhhcccCCcccchhhhHHHhhccHHHH
Q psy5184 37 IVFPVSRIQRYLKRGNYSERIGIGASVF-LAATLEYLVAEILELAGNAASDNKKSRITPRYLMLAIKNDEELA 108 (209)
Q Consensus 37 L~FPV~ri~r~Lk~~~~~~ris~~A~Vy-LaAvLEYL~aEILelAgn~A~~~kk~rItP~hLq~AV~nD~EL~ 108 (209)
+++|..||+.+++.... -++....+++ ++-.-|-++.++-..++..+...+++.+..+++..+|..-.|+.
T Consensus 58 ~rLpL~rik~vvkl~pd-l~l~~dea~~l~a~aaelfi~~Ln~~~~~~~q~~k~kt~qr~d~D~ai~~~de~~ 129 (162)
T KOG1658|consen 58 SRLPLARIKQVVKLDPD-LTLLNDEASQLIAKAAELFIQELNDVAYTTAQLRKRKTEQRRDYDTAIEAVDEFA 129 (162)
T ss_pred hhccHHHHHhhccCCcc-hhhhhhHHHHHHHHHHHHHHHHHHhccchhHHHHHhhhhhhhcccccccchHHHH
Confidence 56999999999998643 4566555555 67788999999999998888888888999999999999876665
No 77
>PF07524 Bromo_TP: Bromodomain associated; InterPro: IPR006565 This bromodomain is found in eukaryotic transcription factors and PHD domain containing proteins (IPR001965 from INTERPRO). The tandem PHD finger-bromodomain is found in many chromatin-associated proteins. It is involved in gene silencing by the human co-repressor KRAB-associated protein 1 (KAP1). The tandem PHD finger-bromodomain of KAP1 has a distinct structure that joins the two protein modules. The first helix, alpha(Z), of an atypical bromodomain forms the central hydrophobic core that anchors the other three helices of the bromodomain on one side and the zinc binding PHD finger on the other []. The Rap1 GTPase-activating protein, Sipa1, is modulated by the cellular bromodomain protein, Brd4. Brd4 belongs to the BET family and is a multifunctional protein involved in transcription, replication, the signal transduction pathway, and cell cycle progression. All of these functions are linked to its association with acetylated chromatin. It has tandem bromodomains []. The dysregulation of the Brd4-associated pathways may play an important role in breast cancer progression []. Bovine papillomavirus type 1 E2 also binds to chromosomes in a complex with Brd4. Interaction with Brd4 is additionally important for E2-mediated transcriptional regulation [, ].
Probab=47.78 E-value=57 Score=22.94 Aligned_cols=49 Identities=14% Similarity=0.076 Sum_probs=41.9
Q ss_pred ccccCCchhHHHHHHHHHHHHHHHHHhhhhcccCCcccchhhhHHHhhc
Q psy5184 55 ERIGIGASVFLAATLEYLVAEILELAGNAASDNKKSRITPRYLMLAIKN 103 (209)
Q Consensus 55 ~ris~~A~VyLaAvLEYL~aEILelAgn~A~~~kk~rItP~hLq~AV~n 103 (209)
..++.+|--.|+-+++..+.+|...+-..|...+++..++.++..+...
T Consensus 22 ~~~~~~al~~Ltdi~~~yl~~l~~~~~~~ae~~gRt~~~~~Dv~~al~~ 70 (77)
T PF07524_consen 22 DSASPSALDTLTDILQRYLQELGRTAKRYAEHAGRTEPNLQDVEQALEE 70 (77)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 4677788888999998888899998888898889999999999988753
No 78
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=46.48 E-value=4.1 Score=41.83 Aligned_cols=97 Identities=18% Similarity=0.140 Sum_probs=57.0
Q ss_pred HHHHHHHHhhhhcccCCcccchhhhHHHhhccH--HHHhhhcCceecC----------CCCCCccccccccccccccccc
Q psy5184 73 VAEILELAGNAASDNKKSRITPRYLMLAIKNDE--ELAKLLCGVTIAQ----------GGVLPHIEPVLLTKKTNEYYIQ 140 (209)
Q Consensus 73 ~aEILelAgn~A~~~kk~rItP~hLq~AV~nD~--EL~~ll~~~~ia~----------ggv~P~i~~~lL~~~~~~~~~~ 140 (209)
+.++|+.|-..|+..+...|++.||-+++-.++ .+..+|...-+.. -.-.|.-...-+ ..+.....+
T Consensus 5 a~~~L~~A~~~A~~~~h~~I~~eHLLlaLL~~~~~~~~~iL~~~Gvd~~~Lr~~le~~l~~~p~~~~~~~-~~S~~l~~v 83 (852)
T TIGR03345 5 SRRALEQAAALCVARGHPEVELEHWLLALLDQPDSDLAAILRHFGVDLGRLKADLARALDKLPRGNTRTP-VFSPHLVEL 83 (852)
T ss_pred HHHHHHHHHHHHHHhCCCcccHHHHHHHHHhccCcHHHHHHHHcCCCHHHHHHHHHHHhccCCCCCCCCC-CcCHHHHHH
Confidence 356788999999999999999999999987653 2344443211110 000110000001 111111226
Q ss_pred cccccc-cccccccccccccchhhhccChHH
Q psy5184 141 QEYDIF-TASDNKKSRITPRYLMLAIKNDEE 170 (209)
Q Consensus 141 lelA~~-~a~~~~k~rItPrhl~lAi~ndee 170 (209)
++.|.. .+...+...|.+.||.+|+-.+++
T Consensus 84 L~~A~~~~a~~~g~~~I~teHLLlALl~e~~ 114 (852)
T TIGR03345 84 LQEAWLLASLELGDGRIRSGHLLLALLTDPE 114 (852)
T ss_pred HHHHHHHHHHHcCCCcccHHHHHHHHHcccc
Confidence 666765 444567788999999999876643
No 79
>PLN00161 histone H3; Provisional
Probab=45.96 E-value=34 Score=27.67 Aligned_cols=68 Identities=18% Similarity=0.200 Sum_probs=53.2
Q ss_pred cccccChhhHHHHHhhC--Cc---cccccCCchhHHHHHHHHHHHHHHHHHhhhhcccCCcccchhhhHHHhh
Q psy5184 35 ANIVFPVSRIQRYLKRG--NY---SERIGIGASVFLAATLEYLVAEILELAGNAASDNKKSRITPRYLMLAIK 102 (209)
Q Consensus 35 agL~FPV~ri~r~Lk~~--~~---~~ris~~A~VyLaAvLEYL~aEILelAgn~A~~~kk~rItP~hLq~AV~ 102 (209)
.+|.+|-.-|.|++++- .+ ..|+...|..-|--+-|..+-.++|-+.-.|...++..|.|.|++++..
T Consensus 52 t~lLIpklPF~RLVREI~~~~~~~~~Rfq~~Al~ALQEAsEayLV~lFeda~lcaiHAkRVTlm~kDm~La~r 124 (135)
T PLN00161 52 TELLIRKLPFARLVREISNEMLREPFRWTAEALLALQEATEDFLVHLFEDCNLCAIHAKRVTIMPKDMQLARR 124 (135)
T ss_pred cccccccccHHHHHHHHHHhcCCCCcEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccchhhHHHHHH
Confidence 45667777777777751 12 2588888888888888999999999997778788888999999998854
No 80
>PF04823 Herpes_UL49_2: Herpesvirus UL49 tegument protein; InterPro: IPR006908 This is a family of herpesvirus UL49 tegument proteins. It was shown that interactions between herpesvirus envelope and tegument proteins may play a role in secondary envelopment during herpesvirus virion maturation.
Probab=44.81 E-value=11 Score=28.81 Aligned_cols=15 Identities=40% Similarity=0.636 Sum_probs=12.1
Q ss_pred cChHHHhhhhccccc
Q psy5184 166 KNDEELAKLLCGVTI 180 (209)
Q Consensus 166 ~ndeeL~~L~~~~ti 180 (209)
+|||||+.||+...|
T Consensus 67 rtneeLd~lL~~a~I 81 (96)
T PF04823_consen 67 RTNEELDRLLEAAVI 81 (96)
T ss_pred CChHHHHHHHHhceE
Confidence 689999999986443
No 81
>KOG1745|consensus
Probab=44.54 E-value=18 Score=29.37 Aligned_cols=63 Identities=22% Similarity=0.237 Sum_probs=46.4
Q ss_pred ChhhHHH-HHhhCCccccccCCchhHHHHHHHHHHHHHHHHHhhhhcccCCcccchhhhHHHhh
Q psy5184 40 PVSRIQR-YLKRGNYSERIGIGASVFLAATLEYLVAEILELAGNAASDNKKSRITPRYLMLAIK 102 (209)
Q Consensus 40 PV~ri~r-~Lk~~~~~~ris~~A~VyLaAvLEYL~aEILelAgn~A~~~kk~rItP~hLq~AV~ 102 (209)
|-.|+-| ..++.....|+.++|..-|--..|..+-.++|-+.-.|...++..|.|.++|+|..
T Consensus 68 PFqRlvrei~q~f~~dLrfqs~Ai~ALQeA~EayLv~LfEdtnlcAihAkRVTimpkdiQlArr 131 (137)
T KOG1745|consen 68 PFQRLVREIAQDFKTDLRFQSSAIAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 131 (137)
T ss_pred cHHHHhHHHHhcccccceehHHHHHHHHHHHHHHHHHhccccchhhhccceeEecccceehhhh
Confidence 4344444 33444444588888888888888887788888887667778889999999999865
No 82
>smart00803 TAF TATA box binding protein associated factor. TAFs (TATA box binding protein associated factors) are part of the transcription initiation factor TFIID multimeric protein complex. TFIID is composed of the TATA box binding protein (TBP) and a number of TAFs. The TAFs provide binding sites for many different transcriptional activators and co-activators that modulate transcription initiation by Pol II. TAF proteins adopt a histone-like fold.
Probab=39.87 E-value=3.3 Score=29.08 Aligned_cols=38 Identities=11% Similarity=0.054 Sum_probs=29.2
Q ss_pred ccccccccccccccccccccccccccccccccccchhhhcc
Q psy5184 126 EPVLLTKKTNEYYIQQEYDIFTASDNKKSRITPRYLMLAIK 166 (209)
Q Consensus 126 ~~~lL~~~~~~~~~~lelA~~~a~~~~k~rItPrhl~lAi~ 166 (209)
++..++|.-.+ +++-|.+-++..+++.+|+.++.+|++
T Consensus 28 l~~~~e~rl~~---i~~~A~k~~~hakRktlt~~DI~~Alk 65 (65)
T smart00803 28 LAEDVEYRIKE---IVQEALKFMRHSKRTTLTTSDIDSALR 65 (65)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHhCCCeecHHHHHHHhC
Confidence 34445555455 677789999999999999999998874
No 83
>COG5251 TAF40 Transcription initiation factor TFIID, subunit TAF11 [Transcription]
Probab=39.40 E-value=44 Score=28.31 Aligned_cols=64 Identities=16% Similarity=0.187 Sum_probs=48.7
Q ss_pred cChhhHHHHHhhCCccccccCCchhHHHHHHHHHHHHHHHHHhhhhcc-cCCcccchhhhHHHhhc
Q psy5184 39 FPVSRIQRYLKRGNYSERIGIGASVFLAATLEYLVAEILELAGNAASD-NKKSRITPRYLMLAIKN 103 (209)
Q Consensus 39 FPV~ri~r~Lk~~~~~~ris~~A~VyLaAvLEYL~aEILelAgn~A~~-~kk~rItP~hLq~AV~n 103 (209)
||-..|+++.-. ...+-|+..-.||+.++=.-++.||+|||..+-.. .-.-...|.|++-|.+.
T Consensus 116 lnKt~VKKlast-V~nQtVspNi~I~l~g~~KVfvGEiIElA~~Vq~~w~~sgpl~p~h~reayr~ 180 (199)
T COG5251 116 LNKTQVKKLAST-VANQTVSPNIRIFLQGVGKVFVGEIIELAMIVQNKWLTSGPLIPFHKREAYRY 180 (199)
T ss_pred CCHHHHHHHHHH-HhccccCCCeeeeeechhHHHHHHHHHHHHHHHHHhcccCCCChHHHHHHHHH
Confidence 566666666554 34567888999999999999999999999655332 23345889999999886
No 84
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=39.34 E-value=15 Score=37.54 Aligned_cols=96 Identities=23% Similarity=0.208 Sum_probs=61.8
Q ss_pred HHHHHHHHhhhhcccCCcccchhhhHHHhhccHHHHhhhcCceec----------CCCCCCccccccccccccccccccc
Q psy5184 73 VAEILELAGNAASDNKKSRITPRYLMLAIKNDEELAKLLCGVTIA----------QGGVLPHIEPVLLTKKTNEYYIQQE 142 (209)
Q Consensus 73 ~aEILelAgn~A~~~kk~rItP~hLq~AV~nD~EL~~ll~~~~ia----------~ggv~P~i~~~lL~~~~~~~~~~le 142 (209)
+.++|+.|...|+..+..-+++.||-+++-.+++-..++....+. .-+-.|..... ++.+.....+++
T Consensus 6 ~~~~l~~a~~~a~~~~h~~~~~eHll~~ll~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~~s~~~~~~~~ 83 (786)
T COG0542 6 AQKALELAQELARMRRHEYVTPEHLLLALLDQPKGDELLNLCGIDLDKLRQELEEFIDKLPKVLGS--PYLSPRLKRVLE 83 (786)
T ss_pred HHHHHHHHHHHHHHhCCCcccHHHHHHHHHcCCchHHHHHHcCCCHHHHHHHHHHHHhccCCCCCC--CCCCHHHHHHHH
Confidence 356788888889888999999999999998766433333221110 00111111111 111222222677
Q ss_pred cccccccccccccccccchhhhccChHH
Q psy5184 143 YDIFTASDNKKSRITPRYLMLAIKNDEE 170 (209)
Q Consensus 143 lA~~~a~~~~k~rItPrhl~lAi~ndee 170 (209)
.|...|...+...|+..||.+|+-++.+
T Consensus 84 ~a~~~a~~~~~~~v~~~~llla~~~~~~ 111 (786)
T COG0542 84 RAWLLAQSLGDEYVSTEHLLLALLNEPE 111 (786)
T ss_pred HHHHHHHhccCccccHHHHHHHHhcccc
Confidence 7888888888889999999999988763
No 85
>KOG3901|consensus
Probab=39.15 E-value=47 Score=25.83 Aligned_cols=35 Identities=17% Similarity=0.324 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHhhhhcccCCcccchhhhHHHhhccHH
Q psy5184 68 TLEYLVAEILELAGNAASDNKKSRITPRYLMLAIKNDEE 106 (209)
Q Consensus 68 vLEYL~aEILelAgn~A~~~kk~rItP~hLq~AV~nD~E 106 (209)
|+||++.- +..|-+++ ++-+..-.++.++++.|+.
T Consensus 40 V~~Yi~el-t~~a~~~g---~rgk~~veD~~f~lRkDpk 74 (109)
T KOG3901|consen 40 VLEYITEL-THAAMEIG---KRGKVKVEDFKFLLRKDPK 74 (109)
T ss_pred HHHHHHHH-HHHHHHhc---ccCceeHHHHHHHHHhChH
Confidence 44444322 44444434 4446778999999999964
No 86
>PF02269 TFIID-18kDa: Transcription initiation factor IID, 18kD subunit; InterPro: IPR003195 This family includes the Spt3 yeast transcription factors and the 18 kDa subunit from human transcription initiation factor IID (TFIID-18). Determination of the crystal structure reveals an atypical histone fold [].; GO: 0006366 transcription from RNA polymerase II promoter; PDB: 1BH9_A 1BH8_A.
Probab=28.68 E-value=18 Score=27.05 Aligned_cols=29 Identities=14% Similarity=0.242 Sum_probs=2.7
Q ss_pred ccccccccccccccccccchhhhccChHH
Q psy5184 142 EYDIFTASDNKKSRITPRYLMLAIKNDEE 170 (209)
Q Consensus 142 elA~~~a~~~~k~rItPrhl~lAi~ndee 170 (209)
--|.+.|...+..+|+++++.+++++|.-
T Consensus 41 ~~A~~~a~~rg~~~i~~eDl~F~lR~D~~ 69 (93)
T PF02269_consen 41 QEAMEVAQRRGSKKIKVEDLLFLLRKDPK 69 (93)
T ss_dssp HHHHC------------------------
T ss_pred HHHHHHHhccccCcCcHHHHHHHHhcCHH
Confidence 33566777778889999999999999963
No 87
>PLN00158 histone H2B; Provisional
Probab=28.34 E-value=5.7 Score=31.31 Aligned_cols=23 Identities=30% Similarity=0.250 Sum_probs=20.8
Q ss_pred ccccccccccccccccchhhhcc
Q psy5184 144 DIFTASDNKKSRITPRYLMLAIK 166 (209)
Q Consensus 144 A~~~a~~~~k~rItPrhl~lAi~ 166 (209)
|..-|+.+++..||+|.||-|++
T Consensus 69 As~La~~nkr~TltsrEIqtAvr 91 (116)
T PLN00158 69 AGKLARYNKKPTVTSREIQTAVR 91 (116)
T ss_pred HHHHHhccCCCcCCHHHHHHHHH
Confidence 77788889999999999998886
No 88
>PHA03381 tegument protein VP22; Provisional
Probab=26.47 E-value=32 Score=30.57 Aligned_cols=15 Identities=53% Similarity=0.747 Sum_probs=12.0
Q ss_pred cChHHHhhhhccccc
Q psy5184 166 KNDEELAKLLCGVTI 180 (209)
Q Consensus 166 ~ndeeL~~L~~~~ti 180 (209)
+|||||+.||+...|
T Consensus 224 rtnEeLd~fL~~AvI 238 (290)
T PHA03381 224 RNDEELNDLLGATNI 238 (290)
T ss_pred CchHHHHHHHhhceE
Confidence 699999999985433
No 89
>COG3636 Predicted transcriptional regulator [Transcription]
Probab=25.83 E-value=82 Score=24.24 Aligned_cols=53 Identities=17% Similarity=0.280 Sum_probs=31.6
Q ss_pred CCchhHHHHHHHH-----HHHH--HHHHHhhhhcccCCcccchhhhHHHhh--ccHHHHhhh
Q psy5184 59 IGASVFLAATLEY-----LVAE--ILELAGNAASDNKKSRITPRYLMLAIK--NDEELAKLL 111 (209)
Q Consensus 59 ~~A~VyLaAvLEY-----L~aE--ILelAgn~A~~~kk~rItP~hLq~AV~--nD~EL~~ll 111 (209)
..+.+||.++||- +.+- ++..+++.+.--++..++++||-.+.+ .++.|+.++
T Consensus 21 e~ia~yL~~~le~~d~a~i~~alg~var~~GMsqvA~~aGlsRe~LYkaLS~~GNPtf~Til 82 (100)
T COG3636 21 EAIAAYLNAALEEGDPALIAAALGVVARSRGMSQVARKAGLSREGLYKALSPGGNPTFDTIL 82 (100)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCHHHHHHHhCccHHHHHHHhCCCCCCcHHHHH
Confidence 3578899999873 3322 223333333333455688889887776 456666555
No 90
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=24.47 E-value=19 Score=36.72 Aligned_cols=39 Identities=15% Similarity=0.187 Sum_probs=33.8
Q ss_pred ccccccccccccccccccccchhhhccChHHHhhhhccc
Q psy5184 140 QQEYDIFTASDNKKSRITPRYLMLAIKNDEELAKLLCGV 178 (209)
Q Consensus 140 ~lelA~~~a~~~~k~rItPrhl~lAi~ndeeL~~L~~~~ 178 (209)
+++.|...|...+-.-|+|+||.+++-++.++..+|...
T Consensus 9 ~l~~a~~~a~~~~~~~~~~~h~l~~l~~~~~~~~~~~~~ 47 (758)
T PRK11034 9 SLNMAFARAREHRHEFMTVEHLLLALLSNPSAREALEAC 47 (758)
T ss_pred HHHHHHHHHHHcCCCcchHHHHHHHHHcChhHHHHHHHc
Confidence 677889999999999999999999999988788777653
No 91
>CHL00095 clpC Clp protease ATP binding subunit
Probab=22.44 E-value=16 Score=37.24 Aligned_cols=34 Identities=6% Similarity=-0.055 Sum_probs=28.8
Q ss_pred cccccccccccccccccccccccchhhhccChHH
Q psy5184 137 YYIQQEYDIFTASDNKKSRITPRYLMLAIKNDEE 170 (209)
Q Consensus 137 ~~~~lelA~~~a~~~~k~rItPrhl~lAi~ndee 170 (209)
...+++.|...|...+-..|+|+||.||+-.+++
T Consensus 9 a~~vL~~A~~~A~~~~h~~V~~EHLLLaLL~~~~ 42 (821)
T CHL00095 9 AIKVIMLSQEEARRLGHNFVGTEQILLGLIGEGT 42 (821)
T ss_pred HHHHHHHHHHHHHHhCCCcCcHHHHHHHHHhCCC
Confidence 3347788999999999999999999999877654
No 92
>KOG3334|consensus
Probab=21.49 E-value=3.4e+02 Score=22.32 Aligned_cols=56 Identities=27% Similarity=0.233 Sum_probs=44.8
Q ss_pred HHHHHhhCCccccccCCchhHHHHHHHHH---HHHHHHHHhhhhcccCCcccchhhhHHHhhc
Q psy5184 44 IQRYLKRGNYSERIGIGASVFLAATLEYL---VAEILELAGNAASDNKKSRITPRYLMLAIKN 103 (209)
Q Consensus 44 i~r~Lk~~~~~~ris~~A~VyLaAvLEYL---~aEILelAgn~A~~~kk~rItP~hLq~AV~n 103 (209)
|+-+|++.. |..+-|-...-.|||- +..||+-|.=.+...++..|.-.++++|+..
T Consensus 19 i~~iL~s~G----I~eyEprVi~qlLefa~rYtt~vL~DA~vys~HA~ka~i~~eDVrlA~~~ 77 (148)
T KOG3334|consen 19 IASILKSLG----IQEYEPRVINQLLEFAYRYTTTVLDDAKVYSSHAKKATIDAEDVRLAIQM 77 (148)
T ss_pred HHHHHHHcC----ccccChHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHH
Confidence 777788753 5666677777778874 5788999988888888999999999999985
No 93
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=21.24 E-value=26 Score=35.23 Aligned_cols=37 Identities=16% Similarity=0.189 Sum_probs=31.8
Q ss_pred ccccccccccccccccccccchhhhccChHHHhhhhc
Q psy5184 140 QQEYDIFTASDNKKSRITPRYLMLAIKNDEELAKLLC 176 (209)
Q Consensus 140 ~lelA~~~a~~~~k~rItPrhl~lAi~ndeeL~~L~~ 176 (209)
+++.|.+.|...+-..|+|+||.+|+-.+++..++|.
T Consensus 8 ~L~~A~~~A~~~~h~~V~~EHLLlaLL~~~~~~~iL~ 44 (731)
T TIGR02639 8 ILDAALEEAKKRRHEFVTLEHILLALLFDSDAIEILE 44 (731)
T ss_pred HHHHHHHHHHHhCCCcCcHHHHHHHHHcCchHHHHHH
Confidence 6778899999999999999999999988876666665
No 94
>PHA02669 hypothetical protein; Provisional
Probab=21.10 E-value=89 Score=26.42 Aligned_cols=37 Identities=35% Similarity=0.436 Sum_probs=22.9
Q ss_pred chhHHHHHHHHHHHHHHHHHhhhhcccCCcccchhhhHHH
Q psy5184 61 ASVFLAATLEYLVAEILELAGNAASDNKKSRITPRYLMLA 100 (209)
Q Consensus 61 A~VyLaAvLEYL~aEILelAgn~A~~~kk~rItP~hLq~A 100 (209)
|.+||++..-||+.||--.| -+.++++|....--++|
T Consensus 12 avi~LTgAaiYlLiEiGLAa---ERanKrsRvK~nMRkLa 48 (210)
T PHA02669 12 AVIYLTGAAIYLLIEIGLAA---ERANKRSRVKANMRKLA 48 (210)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHhhhHHHHHHHHHHHH
Confidence 57899999999987764333 34456665444333333
No 95
>COG5150 Class 2 transcription repressor NC2, beta subunit (Dr1) [Transcription]
Probab=20.89 E-value=1.4e+02 Score=24.10 Aligned_cols=67 Identities=16% Similarity=0.227 Sum_probs=41.4
Q ss_pred ccccChhhHHHHHhhCCcc--ccccCCchhHHHHHHHHHHHHHHHHHhhhhcccCCcccchhhhHHHhhc
Q psy5184 36 NIVFPVSRIQRYLKRGNYS--ERIGIGASVFLAATLEYLVAEILELAGNAASDNKKSRITPRYLMLAIKN 103 (209)
Q Consensus 36 gL~FPV~ri~r~Lk~~~~~--~ris~~A~VyLaAvLEYL~aEILelAgn~A~~~kk~rItP~hLq~AV~n 103 (209)
.+.+|-.-+.+++-+.-.. .---..--+|+-+++||+.- +-..|..+|.+..++.|++.|+--|..|
T Consensus 9 e~sLPKATVqKMvS~iLp~dl~ftKearei~in~cieFi~~-lsseAne~ce~EaKKTIa~EHviKALen 77 (148)
T COG5150 9 ENSLPKATVQKMVSSILPKDLVFTKEAREIFINACIEFINM-LSSEANEACEEEAKKTIAYEHVIKALEN 77 (148)
T ss_pred cccCcHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhccccHHHHHHHHHh
Confidence 4566766666665542111 01122345788999998742 2223444455567889999999999887
No 96
>PLN00163 histone H4; Provisional
Probab=20.33 E-value=50 Score=23.06 Aligned_cols=34 Identities=26% Similarity=0.331 Sum_probs=23.8
Q ss_pred cccccCCCCcccccccChhhHHHHHhhCCccccccCC
Q psy5184 24 SNAARRTRSAKANIVFPVSRIQRYLKRGNYSERIGIG 60 (209)
Q Consensus 24 ~~~~~~s~s~RagL~FPV~ri~r~Lk~~~~~~ris~~ 60 (209)
++.+++.+.+-.|++=|. |.|+-+.+. ..|||..
T Consensus 17 KRhrk~lrd~i~gItKpa--IrRLARRgG-VKRIs~~ 50 (59)
T PLN00163 17 KRHRKVLRDNIQGITKPA--IRRLARRGG-VKRISGL 50 (59)
T ss_pred hhHHHHHHHhhcccchHH--HHHHHHhcC-ceeecch
Confidence 344556666667877776 999998874 4688764
No 97
>KOG1744|consensus
Probab=20.30 E-value=26 Score=28.10 Aligned_cols=24 Identities=29% Similarity=0.220 Sum_probs=21.3
Q ss_pred cccccccccccccccccchhhhcc
Q psy5184 143 YDIFTASDNKKSRITPRYLMLAIK 166 (209)
Q Consensus 143 lA~~~a~~~~k~rItPrhl~lAi~ 166 (209)
.|+.-|+.+++.-|+-|++|.|++
T Consensus 78 ea~rla~y~krstisSreiqta~r 101 (127)
T KOG1744|consen 78 EAGRLAHYNKRSTISSREIQTAVR 101 (127)
T ss_pred HHhhhhhhcCCCcccHHHHHHHHH
Confidence 377888999999999999999986
Done!