Query psy5184
Match_columns 209
No_of_seqs 221 out of 718
Neff 5.8
Searched_HMMs 29240
Date Fri Aug 16 19:30:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5184.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5184hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1f66_C Histone H2A.Z; nucleoso 100.0 4.3E-43 1.5E-47 277.4 8.1 124 12-136 1-125 (128)
2 1id3_C Histone H2A.1; nucleoso 100.0 1.7E-42 5.9E-47 274.8 10.5 115 22-136 9-123 (131)
3 2f8n_G Core histone macro-H2A. 100.0 1.5E-42 5.2E-47 271.6 7.7 112 23-134 7-118 (120)
4 2nqb_C Histone H2A; nucleosome 100.0 7.8E-42 2.7E-46 268.5 8.1 114 23-136 8-121 (123)
5 1tzy_A Histone H2A-IV; histone 100.0 8E-42 2.7E-46 270.4 8.2 114 23-136 10-123 (129)
6 2f8n_K Histone H2A type 1; nuc 100.0 1.7E-41 5.7E-46 273.9 8.2 115 22-136 28-142 (149)
7 2jss_A Chimera of histone H2B. 100.0 2.2E-33 7.4E-38 235.3 8.6 98 27-125 94-192 (192)
8 1id3_C Histone H2A.1; nucleoso 100.0 3.2E-31 1.1E-35 210.2 -0.7 115 87-208 14-130 (131)
9 2nqb_C Histone H2A; nucleosome 100.0 9.7E-31 3.3E-35 205.4 -3.4 109 86-200 11-121 (123)
10 2f8n_G Core histone macro-H2A. 100.0 1E-30 3.5E-35 204.5 -3.5 108 86-199 10-119 (120)
11 1tzy_A Histone H2A-IV; histone 99.9 2E-30 6.8E-35 205.1 -3.4 110 86-201 13-124 (129)
12 1f66_C Histone H2A.Z; nucleoso 99.9 3.4E-30 1.2E-34 203.5 -3.6 107 87-200 16-125 (128)
13 2f8n_K Histone H2A type 1; nuc 99.9 7E-30 2.4E-34 206.1 -3.6 109 87-201 33-143 (149)
14 2jss_A Chimera of histone H2B. 99.9 1.7E-25 5.7E-30 187.4 3.6 144 42-189 7-192 (192)
15 3ksy_A SOS-1, SON of sevenless 99.9 2.5E-24 8.4E-29 216.8 3.4 100 26-127 92-191 (1049)
16 1jfi_A Transcription regulator 99.8 3.2E-21 1.1E-25 145.6 5.8 81 31-111 4-84 (98)
17 1n1j_B NF-YC; histone-like PAI 99.7 8.6E-17 2.9E-21 121.0 6.5 78 34-111 15-92 (97)
18 4g92_C HAPE; transcription fac 99.7 9.8E-17 3.4E-21 124.9 6.7 78 36-114 39-116 (119)
19 1tzy_D Histone H4-VI; histone- 99.5 1.8E-14 6.3E-19 109.4 6.9 77 24-103 17-93 (103)
20 2byk_A Chrac-16; nucleosome sl 99.5 4.9E-15 1.7E-19 118.4 3.7 85 27-111 8-93 (140)
21 2yfw_B Histone H4, H4; cell cy 99.5 2.2E-14 7.4E-19 109.0 6.1 77 24-103 17-93 (103)
22 3ksy_A SOS-1, SON of sevenless 99.5 7.8E-16 2.7E-20 155.1 -4.7 150 33-192 18-192 (1049)
23 1f1e_A Histone fold protein; a 99.1 7.4E-12 2.5E-16 101.4 -1.7 128 38-168 4-147 (154)
24 1f1e_A Histone fold protein; a 99.0 2.9E-10 1E-14 92.0 5.3 71 33-104 77-147 (154)
25 1jfi_A Transcription regulator 98.8 1.6E-10 5.3E-15 86.9 -4.0 77 94-176 7-85 (98)
26 1b67_A Protein (histone HMFA); 98.6 3.9E-08 1.3E-12 68.6 5.4 65 38-103 2-66 (68)
27 1id3_B Histone H4; nucleosome 98.5 2.3E-07 8E-12 70.1 6.5 77 24-103 16-92 (102)
28 1ku5_A HPHA, archaeal histon; 98.4 2.8E-07 9.7E-12 64.7 5.5 65 38-103 6-70 (70)
29 1n1j_A NF-YB; histone-like PAI 98.1 3.2E-06 1.1E-10 62.4 5.8 68 36-103 6-74 (93)
30 1n1j_B NF-YC; histone-like PAI 98.1 6E-08 2.1E-12 72.5 -3.7 78 93-176 14-93 (97)
31 4g92_C HAPE; transcription fac 98.1 5.7E-08 2E-12 75.3 -4.2 73 98-177 41-115 (119)
32 3b0c_W CENP-W, centromere prot 98.1 9.2E-06 3.1E-10 57.9 6.4 66 38-103 4-69 (76)
33 2byk_B Chrac-14; nucleosome sl 97.9 8.6E-06 2.9E-10 63.8 4.4 69 36-104 7-76 (128)
34 2hue_C Histone H4; mini beta s 97.6 0.00011 3.8E-09 53.2 6.3 70 31-103 5-74 (84)
35 2byk_A Chrac-16; nucleosome sl 97.2 7.5E-06 2.6E-10 65.1 -4.6 82 88-175 9-93 (140)
36 1taf_B TFIID TBP associated fa 97.1 0.00082 2.8E-08 47.4 5.7 66 36-102 4-69 (70)
37 1jfi_B DR1 protein, transcript 97.1 0.00053 1.8E-08 56.5 5.3 76 35-111 12-87 (179)
38 1tzy_B Histone H2B; histone-fo 96.8 0.0012 4E-08 51.5 4.7 65 37-102 36-100 (126)
39 3b0c_T CENP-T, centromere prot 96.7 0.0026 9E-08 48.4 5.7 70 36-106 5-74 (111)
40 3fh2_A Probable ATP-dependent 96.4 0.0017 5.8E-08 50.3 2.9 103 73-176 11-127 (146)
41 3fes_A ATP-dependent CLP endop 96.3 0.0013 4.4E-08 51.0 1.8 102 73-176 12-127 (145)
42 1taf_A TFIID TBP associated fa 96.1 0.013 4.6E-07 40.8 6.0 60 43-103 6-65 (68)
43 1khy_A CLPB protein; alpha hel 96.0 0.004 1.4E-07 47.7 3.3 104 74-177 11-128 (148)
44 2nqb_D Histone H2B; nucleosome 95.9 0.008 2.7E-07 46.6 4.5 63 39-102 35-97 (123)
45 3v9r_A MHF1, uncharacterized p 95.8 0.013 4.3E-07 43.1 5.1 79 34-113 11-89 (90)
46 1k6k_A ATP-dependent CLP prote 95.7 0.0043 1.5E-07 47.3 2.2 105 73-177 6-126 (143)
47 1tzy_D Histone H4-VI; histone- 95.6 0.00028 9.4E-09 53.0 -4.9 59 107-168 35-94 (103)
48 3zri_A CLPB protein, CLPV; cha 95.2 0.0093 3.2E-07 48.1 2.7 109 63-173 16-139 (171)
49 3b0b_B CENP-S, centromere prot 95.2 0.015 5.1E-07 44.0 3.6 78 34-112 18-95 (107)
50 2yfw_B Histone H4, H4; cell cy 95.1 0.00031 1.1E-08 52.8 -5.9 48 119-169 48-95 (103)
51 4dra_A Centromere protein S; D 95.1 0.014 4.7E-07 44.7 3.2 79 34-113 26-104 (113)
52 3nqj_A Histone H3-like centrom 94.6 0.041 1.4E-06 39.8 4.5 65 38-102 3-73 (82)
53 2y1q_A CLPC N-domain, negative 94.4 0.0084 2.9E-07 46.0 0.5 101 74-176 11-125 (150)
54 2hue_B Histone H3; mini beta s 94.4 0.056 1.9E-06 38.5 4.8 66 37-102 2-71 (77)
55 1bh9_B TAFII28; histone fold, 94.2 0.06 2.1E-06 39.3 4.6 65 38-103 16-81 (89)
56 3vh5_A CENP-S; histone fold, c 94.1 0.039 1.3E-06 43.6 3.7 79 34-113 18-96 (140)
57 3r45_A Histone H3-like centrom 93.9 0.045 1.5E-06 44.0 3.7 69 34-102 73-147 (156)
58 3nqu_A Histone H3-like centrom 93.9 0.056 1.9E-06 42.7 4.2 69 34-102 57-131 (140)
59 2yfv_A Histone H3-like centrom 93.1 0.086 2.9E-06 39.4 4.0 69 34-102 23-98 (100)
60 1tzy_C Histone H3; histone-fol 93.1 0.12 4.1E-06 40.6 4.9 68 35-102 59-130 (136)
61 3b0b_C CENP-X, centromere prot 91.9 0.25 8.6E-06 35.4 4.9 65 36-100 6-72 (81)
62 4dra_E Centromere protein X; D 91.3 0.37 1.3E-05 34.8 5.3 67 34-100 8-76 (84)
63 2ly8_A Budding yeast chaperone 91.1 0.31 1.1E-05 37.5 5.0 50 54-103 62-111 (121)
64 2l5a_A Histone H3-like centrom 90.1 0.18 6.3E-06 42.9 3.2 59 44-103 167-225 (235)
65 3pxg_A Negative regulator of g 89.4 0.12 4.1E-06 47.2 1.7 96 73-170 10-117 (468)
66 1r6b_X CLPA protein; AAA+, N-t 88.7 0.074 2.5E-06 51.0 -0.3 98 73-170 6-117 (758)
67 3pxi_A Negative regulator of g 86.9 0.092 3.1E-06 50.6 -0.9 96 73-170 10-117 (758)
68 1k6k_A ATP-dependent CLP prote 80.1 0.25 8.5E-06 37.3 -0.8 38 140-177 9-46 (143)
69 1h3o_B Transcription initiatio 79.9 2.7 9.2E-05 29.7 4.6 66 38-103 5-70 (76)
70 3fh2_A Probable ATP-dependent 79.5 0.21 7.1E-06 38.3 -1.5 47 130-176 4-52 (146)
71 1qvr_A CLPB protein; coiled co 78.5 0.44 1.5E-05 46.7 0.1 97 73-169 10-119 (854)
72 2y1q_A CLPC N-domain, negative 77.6 0.16 5.5E-06 38.6 -2.6 44 133-176 6-51 (150)
73 1khy_A CLPB protein; alpha hel 76.8 0.29 1E-05 37.0 -1.4 43 134-176 7-51 (148)
74 3zri_A CLPB protein, CLPV; cha 75.1 0.3 1E-05 39.1 -1.8 55 122-176 14-70 (171)
75 1ku5_A HPHA, archaeal histon; 73.3 0.43 1.5E-05 32.6 -1.1 28 140-167 43-70 (70)
76 3fes_A ATP-dependent CLP endop 71.9 0.25 8.4E-06 37.9 -2.9 43 134-176 9-53 (145)
77 1b67_A Protein (histone HMFA); 70.8 0.52 1.8E-05 31.9 -1.1 28 140-167 39-66 (68)
78 3b0c_W CENP-W, centromere prot 54.1 1.1 3.8E-05 31.2 -2.0 23 144-166 46-68 (76)
79 1wwi_A Hypothetical protein TT 50.0 22 0.00075 28.1 4.7 65 38-103 2-66 (148)
80 3v9r_A MHF1, uncharacterized p 44.8 6.1 0.00021 28.6 0.7 34 144-177 56-89 (90)
81 1r6b_X CLPA protein; AAA+, N-t 43.5 3.6 0.00012 39.2 -0.9 39 139-177 8-46 (758)
82 4dra_A Centromere protein S; D 41.5 26 0.0009 26.4 3.8 80 65-177 25-104 (113)
83 1taf_B TFIID TBP associated fa 40.2 2 6.9E-05 29.8 -2.4 39 125-166 31-69 (70)
84 2l5a_A Histone H3-like centrom 34.6 50 0.0017 27.9 4.8 65 37-101 10-81 (235)
85 3b0b_B CENP-S, centromere prot 32.8 29 0.00099 25.8 2.8 79 65-176 17-95 (107)
86 1tzy_B Histone H2B; histone-fo 25.8 7.5 0.00026 30.0 -1.6 24 143-166 77-100 (126)
87 2nqb_D Histone H2B; nucleosome 25.5 7.6 0.00026 29.8 -1.6 24 143-166 74-97 (123)
88 3pxi_A Negative regulator of g 24.9 5.7 0.0002 38.0 -3.0 43 134-176 7-51 (758)
89 1r4v_A Hypothetical protein AQ 24.6 31 0.0011 27.8 1.7 65 38-103 26-90 (171)
90 3pm8_A PFCDPK2, calcium-depend 24.4 26 0.00089 27.0 1.3 101 86-186 68-184 (197)
91 1qvr_A CLPB protein; coiled co 24.0 11 0.00037 36.8 -1.3 43 134-176 7-51 (854)
92 3vh5_A CENP-S; histone fold, c 20.4 25 0.00084 27.5 0.4 33 145-177 64-96 (140)
No 1
>1f66_C Histone H2A.Z; nucleosome, chromatin, histone variant, protein DNA interaction, nucleoprotein, supercoiled DNA, complex (nucleosome core/DNA); 2.60A {Homo sapiens} SCOP: a.22.1.1
Probab=100.00 E-value=4.3e-43 Score=277.36 Aligned_cols=124 Identities=51% Similarity=0.707 Sum_probs=99.7
Q ss_pred cCCCCccccCCccccccCCCCcccccccChhhHHHHHhhCCcc-ccccCCchhHHHHHHHHHHHHHHHHHhhhhcccCCc
Q psy5184 12 ASGGKDLGSKLKSNAARRTRSAKANIVFPVSRIQRYLKRGNYS-ERIGIGASVFLAATLEYLVAEILELAGNAASDNKKS 90 (209)
Q Consensus 12 ~~~~~~~~~~~k~~~~~~s~s~RagL~FPV~ri~r~Lk~~~~~-~ris~~A~VyLaAvLEYL~aEILelAgn~A~~~kk~ 90 (209)
|+||+.+...++.+++.+|+|+||||||||+||+|||++++|+ +||+++|||||+||||||++||||+|+|+|++++++
T Consensus 1 m~~~~~~~~~~~~~~~~~srS~ragLqfPV~ri~R~Lk~~~~a~~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~k 80 (128)
T 1f66_C 1 MAGGKAGKDSGKAKTKAVSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVK 80 (128)
T ss_dssp ----------------CCCHHHHHTCSSCHHHHHHHHHHTSCSSCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCS
T ss_pred CCCCCCCCCCCCcCCCCcCccccCCccCChHHHHHHHHHcccchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 4566666666667778899999999999999999999999987 599999999999999999999999999999999999
Q ss_pred ccchhhhHHHhhccHHHHhhhcCceecCCCCCCccccccccccccc
Q psy5184 91 RITPRYLMLAIKNDEELAKLLCGVTIAQGGVLPHIEPVLLTKKTNE 136 (209)
Q Consensus 91 rItP~hLq~AV~nD~EL~~ll~~~~ia~ggv~P~i~~~lL~~~~~~ 136 (209)
+|+|+||++||+||+|||.||+ +||++|||+|+||+++|++++.+
T Consensus 81 rItprhi~lAI~nDeEL~~Ll~-~tia~ggv~P~i~~~l~~k~~~~ 125 (128)
T 1f66_C 81 RITPRHLQLAIRGDEELDSLIK-ATIAGGGVIPHIHKSLIGKKGQQ 125 (128)
T ss_dssp EECHHHHHHHHHHSHHHHHHCC-SEETTCCCCCCCCGGGC------
T ss_pred eEcHHHHHHHHhccHHHhhhhc-ceecCCccCCCCCHHhcCccccc
Confidence 9999999999999999999995 59999999999999999987654
No 2
>1id3_C Histone H2A.1; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=100.00 E-value=1.7e-42 Score=274.85 Aligned_cols=115 Identities=63% Similarity=0.935 Sum_probs=106.0
Q ss_pred CccccccCCCCcccccccChhhHHHHHhhCCccccccCCchhHHHHHHHHHHHHHHHHHhhhhcccCCcccchhhhHHHh
Q psy5184 22 LKSNAARRTRSAKANIVFPVSRIQRYLKRGNYSERIGIGASVFLAATLEYLVAEILELAGNAASDNKKSRITPRYLMLAI 101 (209)
Q Consensus 22 ~k~~~~~~s~s~RagL~FPV~ri~r~Lk~~~~~~ris~~A~VyLaAvLEYL~aEILelAgn~A~~~kk~rItP~hLq~AV 101 (209)
+|.+++++|+|+||||+|||+||+|||++++|++||+++|||||+||||||++||||+|+|+|+++++++|+|+||++||
T Consensus 9 ~~~~~~~~srS~ragLqfPV~rI~R~Lk~~~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hI~lAI 88 (131)
T 1id3_C 9 GSAAKASQSRSAKAGLTFPVGRVHRLLRRGNYAQRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAI 88 (131)
T ss_dssp -------CCTTGGGTCSSCHHHHHHHHHTTCSCSEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHH
T ss_pred CCCCCCCCCccccCCeecCHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHH
Confidence 44566789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccHHHHhhhcCceecCCCCCCccccccccccccc
Q psy5184 102 KNDEELAKLLCGVTIAQGGVLPHIEPVLLTKKTNE 136 (209)
Q Consensus 102 ~nD~EL~~ll~~~~ia~ggv~P~i~~~lL~~~~~~ 136 (209)
+||+|||.||+++||++|||+|+||+.+|++++.+
T Consensus 89 ~nDeEL~~Ll~~vtIa~ggvlP~i~~~l~~k~~~~ 123 (131)
T 1id3_C 89 RNDDELNKLLGNVTIAQGGVLPNIHQNLLPKKSAK 123 (131)
T ss_dssp HTCHHHHHHTTTEEETTCCCCCCCCGGGSCCSCCS
T ss_pred hccHHHHHHhcCceecCCccCCCccHHHcCccccc
Confidence 99999999999999999999999999999998765
No 3
>2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Homo sapiens} SCOP: a.22.1.1 PDB: 1u35_C
Probab=100.00 E-value=1.5e-42 Score=271.55 Aligned_cols=112 Identities=62% Similarity=0.954 Sum_probs=106.0
Q ss_pred ccccccCCCCcccccccChhhHHHHHhhCCccccccCCchhHHHHHHHHHHHHHHHHHhhhhcccCCcccchhhhHHHhh
Q psy5184 23 KSNAARRTRSAKANIVFPVSRIQRYLKRGNYSERIGIGASVFLAATLEYLVAEILELAGNAASDNKKSRITPRYLMLAIK 102 (209)
Q Consensus 23 k~~~~~~s~s~RagL~FPV~ri~r~Lk~~~~~~ris~~A~VyLaAvLEYL~aEILelAgn~A~~~kk~rItP~hLq~AV~ 102 (209)
|++++++|+|+||||||||+||+|||++++|++||+++|||||+||||||++||||+|+|+|+++++++|+|+||++||+
T Consensus 7 ~~~~~~~srs~ragLqfPV~ri~R~Lk~~~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~~rItp~hi~lAI~ 86 (120)
T 2f8n_G 7 KKKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAVNAARDNKKGRVTPRHILLAVA 86 (120)
T ss_dssp ---CCCCCHHHHHTCSSCHHHHHHHHHHHSSSCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred CCCcCCcCcccccCccCChHHHHHHHHcCccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHh
Confidence 45567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHhhhcCceecCCCCCCccccccccccc
Q psy5184 103 NDEELAKLLCGVTIAQGGVLPHIEPVLLTKKT 134 (209)
Q Consensus 103 nD~EL~~ll~~~~ia~ggv~P~i~~~lL~~~~ 134 (209)
||+|||.||+++||++|||+|+||+++|++++
T Consensus 87 nDeEL~~Ll~~vtia~ggv~p~i~~~l~~k~~ 118 (120)
T 2f8n_G 87 NDEELNQLLKGVTIASGGVLPNIHPELLAKKR 118 (120)
T ss_dssp TSHHHHHHTTTEEETTCCCCCCCCGGGSCCC-
T ss_pred cCHHHHHHhCCceECCCCcCCCcCHHHcCCcc
Confidence 99999999999999999999999999999875
No 4
>2nqb_C Histone H2A; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_C*
Probab=100.00 E-value=7.8e-42 Score=268.53 Aligned_cols=114 Identities=65% Similarity=1.002 Sum_probs=104.8
Q ss_pred ccccccCCCCcccccccChhhHHHHHhhCCccccccCCchhHHHHHHHHHHHHHHHHHhhhhcccCCcccchhhhHHHhh
Q psy5184 23 KSNAARRTRSAKANIVFPVSRIQRYLKRGNYSERIGIGASVFLAATLEYLVAEILELAGNAASDNKKSRITPRYLMLAIK 102 (209)
Q Consensus 23 k~~~~~~s~s~RagL~FPV~ri~r~Lk~~~~~~ris~~A~VyLaAvLEYL~aEILelAgn~A~~~kk~rItP~hLq~AV~ 102 (209)
|.+++++|+|+||||||||+||+|||++++|++||+++|||||+||||||++||||+|+|+|+++++++|+|+||++||+
T Consensus 8 ~~~~~~~s~s~ragL~fPV~ri~R~Lk~~~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~ 87 (123)
T 2nqb_C 8 KVKGKAKSRSNRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR 87 (123)
T ss_dssp -----CCCHHHHHTCSSCHHHHHHHHHHTTSCSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred CCCCCCCCccccCCeeccHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHh
Confidence 35567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHhhhcCceecCCCCCCccccccccccccc
Q psy5184 103 NDEELAKLLCGVTIAQGGVLPHIEPVLLTKKTNE 136 (209)
Q Consensus 103 nD~EL~~ll~~~~ia~ggv~P~i~~~lL~~~~~~ 136 (209)
||+|||.||+++||++|||+|+||+++|++++.+
T Consensus 88 nDeEL~~Ll~~vtia~ggvlp~i~~~l~~k~~~~ 121 (123)
T 2nqb_C 88 NDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTEK 121 (123)
T ss_dssp TSHHHHHHTTTEEETTCCCCCCCCGGGSSCC---
T ss_pred ccHHHHHHhcCceeCCCCcCCCccHHHcCccccc
Confidence 9999999999999999999999999999987654
No 5
>1tzy_A Histone H2A-IV; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_A 1hq3_A 2aro_A 2hio_A 3c9k_A 3azg_C 3a6n_C 3an2_C 3av1_C 3av2_C 3ayw_C 3aze_C 3azf_C 3afa_C 3azh_C 3azi_C 3azj_C 3azk_C 3azl_C 3azm_C ...
Probab=100.00 E-value=8e-42 Score=270.40 Aligned_cols=114 Identities=66% Similarity=0.992 Sum_probs=104.8
Q ss_pred ccccccCCCCcccccccChhhHHHHHhhCCccccccCCchhHHHHHHHHHHHHHHHHHhhhhcccCCcccchhhhHHHhh
Q psy5184 23 KSNAARRTRSAKANIVFPVSRIQRYLKRGNYSERIGIGASVFLAATLEYLVAEILELAGNAASDNKKSRITPRYLMLAIK 102 (209)
Q Consensus 23 k~~~~~~s~s~RagL~FPV~ri~r~Lk~~~~~~ris~~A~VyLaAvLEYL~aEILelAgn~A~~~kk~rItP~hLq~AV~ 102 (209)
|.+++.+|+|+||||||||+||+|||++++|++||+++|||||+||||||++||||+|+|+|+++++++|+|+||++||+
T Consensus 10 ~~~~~~~srS~ragLqfPV~rI~R~Lk~~~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~ 89 (129)
T 1tzy_A 10 KARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIR 89 (129)
T ss_dssp ----CCCCHHHHHTCSSCHHHHHHHHHHTTSSSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred CCCCCCCCccccCceeccHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHh
Confidence 45567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHhhhcCceecCCCCCCccccccccccccc
Q psy5184 103 NDEELAKLLCGVTIAQGGVLPHIEPVLLTKKTNE 136 (209)
Q Consensus 103 nD~EL~~ll~~~~ia~ggv~P~i~~~lL~~~~~~ 136 (209)
||+|||.||+++||++|||+|+||+.+|++++.+
T Consensus 90 nDeEL~~L~~~vtIa~ggvlP~i~~~l~~k~~~~ 123 (129)
T 1tzy_A 90 NDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTDS 123 (129)
T ss_dssp TSHHHHHHTTTEEETTCCCCCCCCGGGSCC----
T ss_pred ccHHHHHHhCCCeecCCCcCCCCCHHHcCccccc
Confidence 9999999999999999999999999999988764
No 6
>2f8n_K Histone H2A type 1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Mus musculus} SCOP: a.22.1.1
Probab=100.00 E-value=1.7e-41 Score=273.91 Aligned_cols=115 Identities=67% Similarity=0.973 Sum_probs=104.1
Q ss_pred CccccccCCCCcccccccChhhHHHHHhhCCccccccCCchhHHHHHHHHHHHHHHHHHhhhhcccCCcccchhhhHHHh
Q psy5184 22 LKSNAARRTRSAKANIVFPVSRIQRYLKRGNYSERIGIGASVFLAATLEYLVAEILELAGNAASDNKKSRITPRYLMLAI 101 (209)
Q Consensus 22 ~k~~~~~~s~s~RagL~FPV~ri~r~Lk~~~~~~ris~~A~VyLaAvLEYL~aEILelAgn~A~~~kk~rItP~hLq~AV 101 (209)
+|.+++.+|+|+||||||||+||+|||++++|++||+++|||||+||||||++||||+|+|+|+++++++|+|+||++||
T Consensus 28 ~~~~~k~~srS~ragLqFPVgrI~R~LK~~~~a~RVs~~A~VyLAAVLEYL~aEILelAgn~A~~~krkrItprhI~lAI 107 (149)
T 2f8n_K 28 GKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAI 107 (149)
T ss_dssp ------CCCHHHHHTCSSCHHHHHHHHHHTTSCSEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHH
T ss_pred CCCCCCCCCccccCCeeccHHHHHHHHHccccccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHH
Confidence 45667889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccHHHHhhhcCceecCCCCCCccccccccccccc
Q psy5184 102 KNDEELAKLLCGVTIAQGGVLPHIEPVLLTKKTNE 136 (209)
Q Consensus 102 ~nD~EL~~ll~~~~ia~ggv~P~i~~~lL~~~~~~ 136 (209)
+||+|||.||+++||++|||+|+||+++|++++.+
T Consensus 108 ~nDeEL~~Ll~~vtIa~gGVlP~i~~~l~~k~~~~ 142 (149)
T 2f8n_K 108 RNDEELNKLLGRVTIAQGGVLPNIQAVLLPKKTES 142 (149)
T ss_dssp HHSHHHHHHTTTEEETTCCCCCCCCGGGSCC----
T ss_pred hccHHHHHHhcCceEcCCCCCCCccHHHcCccccc
Confidence 99999999999999999999999999999988764
No 7
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=100.00 E-value=2.2e-33 Score=235.26 Aligned_cols=98 Identities=58% Similarity=0.880 Sum_probs=94.2
Q ss_pred ccCCCCcccccccChhhHHHHHhhCCcc-ccccCCchhHHHHHHHHHHHHHHHHHhhhhcccCCcccchhhhHHHhhccH
Q psy5184 27 ARRTRSAKANIVFPVSRIQRYLKRGNYS-ERIGIGASVFLAATLEYLVAEILELAGNAASDNKKSRITPRYLMLAIKNDE 105 (209)
Q Consensus 27 ~~~s~s~RagL~FPV~ri~r~Lk~~~~~-~ris~~A~VyLaAvLEYL~aEILelAgn~A~~~kk~rItP~hLq~AV~nD~ 105 (209)
+.+|+|+||||+|||+||+|||++++++ .||+++|||||+||||||++||||+|+|+|+++++++|+|+||++||+||+
T Consensus 94 ~~~s~s~ragl~fPv~ri~R~lk~~~~a~~Rv~~~A~vyLaavLEyl~~eIlelA~n~a~~~~~~~I~p~~i~lAi~nD~ 173 (192)
T 2jss_A 94 QAQSSSARAGLQFPVGRIKRYLKRHATGRTRVGSKAAIYLTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRGDD 173 (192)
T ss_dssp SSSCHHHHSSCCSCHHHHHHHHHHTTCSSCCCCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHTSH
T ss_pred ccccccccCCCcCCHHHHHHHHHhcCccccccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHhccH
Confidence 5679999999999999999999999887 699999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcCceecCCCCCCcc
Q psy5184 106 ELAKLLCGVTIAQGGVLPHI 125 (209)
Q Consensus 106 EL~~ll~~~~ia~ggv~P~i 125 (209)
|||.||+ .||++|||+|+|
T Consensus 174 eL~~L~~-~ti~~ggv~p~i 192 (192)
T 2jss_A 174 ELDSLIR-ATIASGGVLPHI 192 (192)
T ss_dssp HHHHHHC-SCCTTTCCSSCC
T ss_pred HHHHHHh-hhhcCCCcCCCC
Confidence 9999996 699999999986
No 8
>1id3_C Histone H2A.1; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=99.96 E-value=3.2e-31 Score=210.18 Aligned_cols=115 Identities=43% Similarity=0.505 Sum_probs=102.9
Q ss_pred cCCcccchhhhHHHhhccHHHHhhhcCceecC--CCCCCccccccccccccccccccccccccccccccccccccchhhh
Q psy5184 87 NKKSRITPRYLMLAIKNDEELAKLLCGVTIAQ--GGVLPHIEPVLLTKKTNEYYIQQEYDIFTASDNKKSRITPRYLMLA 164 (209)
Q Consensus 87 ~kk~rItP~hLq~AV~nD~EL~~ll~~~~ia~--ggv~P~i~~~lL~~~~~~~~~~lelA~~~a~~~~k~rItPrhl~lA 164 (209)
..++|.++..|+|+|.+ +++++++..++. +..+|+|++++|||++.+ |+|+|+|+|++++++|||||||++|
T Consensus 14 ~~~srS~ragLqfPV~r---I~R~Lk~~~~a~RVs~~A~VyLaAvLEyL~aE---IlelAgn~A~~~k~krItp~hI~lA 87 (131)
T 1id3_C 14 ASQSRSAKAGLTFPVGR---VHRLLRRGNYAQRIGSGAPVYLTAVLEYLAAE---ILELAGNAARDNKKTRIIPRHLQLA 87 (131)
T ss_dssp --CCTTGGGTCSSCHHH---HHHHHHTTCSCSEECSSHHHHHHHHHHHHHHH---HHHHHHHHHHHTTCSEECHHHHHHH
T ss_pred CCCCccccCCeecCHHH---HHHHHHccccccccchhhHHHHHHHHHHHHHH---HHHHHHHHHhhcCCceEcHHHHHHH
Confidence 45788999999999999 999999988887 889999999999999999 9999999999999999999999999
Q ss_pred ccChHHHhhhhccccccCccccCCCCccccccccCCCCCCCCCC
Q psy5184 165 IKNDEELAKLLCGVTIAQGGVLPHIEPVLLTKKTNGKNTSGSQE 208 (209)
Q Consensus 165 i~ndeeL~~L~~~~tia~ggv~p~i~~~l~~kk~~~~~~~~~~~ 208 (209)
|+||+||++||+++||++|||+|+||++|++||+.++. .+|++
T Consensus 88 I~nDeEL~~Ll~~vtIa~ggvlP~i~~~l~~k~~~~~~-~~~~~ 130 (131)
T 1id3_C 88 IRNDDELNKLLGNVTIAQGGVLPNIHQNLLPKKSAKAT-KASQE 130 (131)
T ss_dssp HHTCHHHHHHTTTEEETTCCCCCCCCGGGSCCSCCSCC------
T ss_pred HhccHHHHHHhcCceecCCccCCCccHHHcCccccccc-ccccc
Confidence 99999999999999999999999999999999986553 34554
No 9
>2nqb_C Histone H2A; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_C*
Probab=99.95 E-value=9.7e-31 Score=205.40 Aligned_cols=109 Identities=46% Similarity=0.565 Sum_probs=99.9
Q ss_pred ccCCcccchhhhHHHhhccHHHHhhhcCceecC--CCCCCccccccccccccccccccccccccccccccccccccchhh
Q psy5184 86 DNKKSRITPRYLMLAIKNDEELAKLLCGVTIAQ--GGVLPHIEPVLLTKKTNEYYIQQEYDIFTASDNKKSRITPRYLML 163 (209)
Q Consensus 86 ~~kk~rItP~hLq~AV~nD~EL~~ll~~~~ia~--ggv~P~i~~~lL~~~~~~~~~~lelA~~~a~~~~k~rItPrhl~l 163 (209)
...+++.++..|+|+|.+ +++++++..++. +..+|+|++++|||++.+ |+|+|+|+|++++++|||||||++
T Consensus 11 ~~~~s~s~ragL~fPV~r---i~R~Lk~~~~a~RV~~~A~VyLaAvLEyL~aE---IlelAgn~A~~~k~krItp~hi~l 84 (123)
T 2nqb_C 11 GKAKSRSNRAGLQFPVGR---IHRLLRKGNYAERVGAGAPVYLAAVMEYLAAE---VLELAGNAARDNKKTRIIPRHLQL 84 (123)
T ss_dssp --CCCHHHHHTCSSCHHH---HHHHHHHTTSCSEECTHHHHHHHHHHHHHHHH---HHHHHHHHHHHTTCSEECHHHHHH
T ss_pred CCCCCccccCCeeccHHH---HHHHHHccccccccchhhHHHHHHHHHHHHHH---HHHHHHHHHHhcCCccccHHHHHH
Confidence 345678899999999999 999999887777 888999999999999999 999999999999999999999999
Q ss_pred hccChHHHhhhhccccccCccccCCCCccccccccCC
Q psy5184 164 AIKNDEELAKLLCGVTIAQGGVLPHIEPVLLTKKTNG 200 (209)
Q Consensus 164 Ai~ndeeL~~L~~~~tia~ggv~p~i~~~l~~kk~~~ 200 (209)
||+||+||++||+++||++|||+||||++|++||+++
T Consensus 85 AI~nDeEL~~Ll~~vtia~ggvlp~i~~~l~~k~~~~ 121 (123)
T 2nqb_C 85 AIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTEK 121 (123)
T ss_dssp HHHTSHHHHHHTTTEEETTCCCCCCCCGGGSSCC---
T ss_pred HHhccHHHHHHhcCceeCCCCcCCCccHHHcCccccc
Confidence 9999999999999999999999999999999998754
No 10
>2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Homo sapiens} SCOP: a.22.1.1 PDB: 1u35_C
Probab=99.95 E-value=1e-30 Score=204.47 Aligned_cols=108 Identities=40% Similarity=0.528 Sum_probs=100.7
Q ss_pred ccCCcccchhhhHHHhhccHHHHhhhcCceecC--CCCCCccccccccccccccccccccccccccccccccccccchhh
Q psy5184 86 DNKKSRITPRYLMLAIKNDEELAKLLCGVTIAQ--GGVLPHIEPVLLTKKTNEYYIQQEYDIFTASDNKKSRITPRYLML 163 (209)
Q Consensus 86 ~~kk~rItP~hLq~AV~nD~EL~~ll~~~~ia~--ggv~P~i~~~lL~~~~~~~~~~lelA~~~a~~~~k~rItPrhl~l 163 (209)
...+++.+...|+|+|.+ +++++++..++. +..+|+|++++|||++++ |+|+|+|+|++++++|||||||++
T Consensus 10 ~~~~srs~ragLqfPV~r---i~R~Lk~~~~a~RV~~~A~VyLaAvLEyL~aE---IlelAgn~A~~~k~~rItp~hi~l 83 (120)
T 2f8n_G 10 STKTSRSAKAGVIFPVGR---MLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAE---ILELAVNAARDNKKGRVTPRHILL 83 (120)
T ss_dssp CCCCCHHHHHTCSSCHHH---HHHHHHHHSSSCEECTHHHHHHHHHHHHHHHH---HHHHHHHHHHHTTCSEECHHHHHH
T ss_pred cCCcCcccccCccCChHH---HHHHHHcCccccccccchHHHHHHHHHHHHHH---HHHHHHHHHhhcCCceEcHHHHHH
Confidence 345678899999999999 999999888776 889999999999999999 999999999999999999999999
Q ss_pred hccChHHHhhhhccccccCccccCCCCccccccccC
Q psy5184 164 AIKNDEELAKLLCGVTIAQGGVLPHIEPVLLTKKTN 199 (209)
Q Consensus 164 Ai~ndeeL~~L~~~~tia~ggv~p~i~~~l~~kk~~ 199 (209)
||+||+||++||+++||++|||+||||++|++||++
T Consensus 84 AI~nDeEL~~Ll~~vtia~ggv~p~i~~~l~~k~~~ 119 (120)
T 2f8n_G 84 AVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRG 119 (120)
T ss_dssp HHHTSHHHHHHTTTEEETTCCCCCCCCGGGSCCC--
T ss_pred HHhcCHHHHHHhCCceECCCCcCCCcCHHHcCCccC
Confidence 999999999999999999999999999999998853
No 11
>1tzy_A Histone H2A-IV; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_A 1hq3_A 2aro_A 2hio_A 3c9k_A 3azg_C 3a6n_C 3an2_C 3av1_C 3av2_C 3ayw_C 3aze_C 3azf_C 3afa_C 3azh_C 3azi_C 3azj_C 3azk_C 3azl_C 3azm_C ...
Probab=99.95 E-value=2e-30 Score=205.08 Aligned_cols=110 Identities=46% Similarity=0.548 Sum_probs=99.6
Q ss_pred ccCCcccchhhhHHHhhccHHHHhhhcCceecC--CCCCCccccccccccccccccccccccccccccccccccccchhh
Q psy5184 86 DNKKSRITPRYLMLAIKNDEELAKLLCGVTIAQ--GGVLPHIEPVLLTKKTNEYYIQQEYDIFTASDNKKSRITPRYLML 163 (209)
Q Consensus 86 ~~kk~rItP~hLq~AV~nD~EL~~ll~~~~ia~--ggv~P~i~~~lL~~~~~~~~~~lelA~~~a~~~~k~rItPrhl~l 163 (209)
...+++.++..|+|+|.+ +++++++..++. +..+|+|++++|||++.+ |+|+|+|+|++++++|||||||++
T Consensus 13 ~~~~srS~ragLqfPV~r---I~R~Lk~~~~a~RVs~~A~VyLaAvLEyL~aE---IlelAgn~A~~~k~krItp~hi~l 86 (129)
T 1tzy_A 13 AKAKSRSSRAGLQFPVGR---VHRLLRKGNYAERVGAGAPVYLAAVLEYLTAE---ILELAGNAARDNKKTRIIPRHLQL 86 (129)
T ss_dssp -CCCCHHHHHTCSSCHHH---HHHHHHHTTSSSEECTHHHHHHHHHHHHHHHH---HHHHHHHHHHHTTCSEECHHHHHH
T ss_pred CCCCCccccCceeccHHH---HHHHHHccccccccchhhHHHHHHHHHHHHHH---HHHHHHHHHHhcCCCeEcHHHHHH
Confidence 345678899999999999 999999887877 889999999999999999 999999999999999999999999
Q ss_pred hccChHHHhhhhccccccCccccCCCCccccccccCCC
Q psy5184 164 AIKNDEELAKLLCGVTIAQGGVLPHIEPVLLTKKTNGK 201 (209)
Q Consensus 164 Ai~ndeeL~~L~~~~tia~ggv~p~i~~~l~~kk~~~~ 201 (209)
||+||+||++||+++||++|||+|+||++|++||+.++
T Consensus 87 AI~nDeEL~~L~~~vtIa~ggvlP~i~~~l~~k~~~~~ 124 (129)
T 1tzy_A 87 AIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTDSH 124 (129)
T ss_dssp HHHTSHHHHHHTTTEEETTCCCCCCCCGGGSCC-----
T ss_pred HHhccHHHHHHhCCCeecCCCcCCCCCHHHcCcccccc
Confidence 99999999999999999999999999999999987644
No 12
>1f66_C Histone H2A.Z; nucleosome, chromatin, histone variant, protein DNA interaction, nucleoprotein, supercoiled DNA, complex (nucleosome core/DNA); 2.60A {Homo sapiens} SCOP: a.22.1.1
Probab=99.95 E-value=3.4e-30 Score=203.54 Aligned_cols=107 Identities=36% Similarity=0.420 Sum_probs=94.5
Q ss_pred cCCcccchhhhHHHhhccHHHHhhhcCceecC---CCCCCccccccccccccccccccccccccccccccccccccchhh
Q psy5184 87 NKKSRITPRYLMLAIKNDEELAKLLCGVTIAQ---GGVLPHIEPVLLTKKTNEYYIQQEYDIFTASDNKKSRITPRYLML 163 (209)
Q Consensus 87 ~kk~rItP~hLq~AV~nD~EL~~ll~~~~ia~---ggv~P~i~~~lL~~~~~~~~~~lelA~~~a~~~~k~rItPrhl~l 163 (209)
..++|.+...|+|+|.+ +++++++..+++ +..+|+|++++|||++++ |+|+|+|+|++++++|||||||++
T Consensus 16 ~~~srS~ragLqfPV~r---i~R~Lk~~~~a~~RV~~~A~VyLaAvLEyL~aE---IlelAgn~A~~~k~krItprhi~l 89 (128)
T 1f66_C 16 KAVSRSQRAGLQFPVGR---IHRHLKSRTTSHGRVGATAAVYSAAILEYLTAE---VLELAGNASKDLKVKRITPRHLQL 89 (128)
T ss_dssp -CCCHHHHHTCSSCHHH---HHHHHHHTSCSSCEECTTHHHHHHHHHHHHHHH---HHHHHHHHHHTTTCSEECHHHHHH
T ss_pred CCcCccccCCccCChHH---HHHHHHHcccchhhccccHHHHHHHHHHHHHHH---HHHHHHHHHHhcCCCeEcHHHHHH
Confidence 45678889999999999 999999887653 888999999999999999 999999999999999999999999
Q ss_pred hccChHHHhhhhccccccCccccCCCCccccccccCC
Q psy5184 164 AIKNDEELAKLLCGVTIAQGGVLPHIEPVLLTKKTNG 200 (209)
Q Consensus 164 Ai~ndeeL~~L~~~~tia~ggv~p~i~~~l~~kk~~~ 200 (209)
||+|||||++||+ +||++|||+|+||++|++||+++
T Consensus 90 AI~nDeEL~~Ll~-~tia~ggv~P~i~~~l~~k~~~~ 125 (128)
T 1f66_C 90 AIRGDEELDSLIK-ATIAGGGVIPHIHKSLIGKKGQQ 125 (128)
T ss_dssp HHHHSHHHHHHCC-SEETTCCCCCCCCGGGC------
T ss_pred HHhccHHHhhhhc-ceecCCccCCCCCHHhcCccccc
Confidence 9999999999996 59999999999999999998754
No 13
>2f8n_K Histone H2A type 1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Mus musculus} SCOP: a.22.1.1
Probab=99.94 E-value=7e-30 Score=206.07 Aligned_cols=109 Identities=45% Similarity=0.544 Sum_probs=99.2
Q ss_pred cCCcccchhhhHHHhhccHHHHhhhcCceecC--CCCCCccccccccccccccccccccccccccccccccccccchhhh
Q psy5184 87 NKKSRITPRYLMLAIKNDEELAKLLCGVTIAQ--GGVLPHIEPVLLTKKTNEYYIQQEYDIFTASDNKKSRITPRYLMLA 164 (209)
Q Consensus 87 ~kk~rItP~hLq~AV~nD~EL~~ll~~~~ia~--ggv~P~i~~~lL~~~~~~~~~~lelA~~~a~~~~k~rItPrhl~lA 164 (209)
..++|.++..|+|+|.+ +++++++..++. +..+|+|++++|||++++ |+|+|+|+|++++++|||||||++|
T Consensus 33 k~~srS~ragLqFPVgr---I~R~LK~~~~a~RVs~~A~VyLAAVLEYL~aE---ILelAgn~A~~~krkrItprhI~lA 106 (149)
T 2f8n_K 33 KAKTRSSRAGLQFPVGR---VHRLLRKGNYSERVGAGAPVYLAAVLEYLTAE---ILELAGNAARDNKKTRIIPRHLQLA 106 (149)
T ss_dssp -CCCHHHHHTCSSCHHH---HHHHHHHTTSCSEECTTHHHHHHHHHHHHHHH---HHHHHHHHHHHTTCSEECHHHHHHH
T ss_pred CCCCccccCCeeccHHH---HHHHHHccccccccCcCcHHHHHHHHHHHHHH---HHHHHHHHHHhcCCCcCcHHHHHHH
Confidence 45678899999999999 999999887877 889999999999999999 9999999999999999999999999
Q ss_pred ccChHHHhhhhccccccCccccCCCCccccccccCCC
Q psy5184 165 IKNDEELAKLLCGVTIAQGGVLPHIEPVLLTKKTNGK 201 (209)
Q Consensus 165 i~ndeeL~~L~~~~tia~ggv~p~i~~~l~~kk~~~~ 201 (209)
|+||+||++||+++||++|||+|+||++|++||+.++
T Consensus 107 I~nDeEL~~Ll~~vtIa~gGVlP~i~~~l~~k~~~~~ 143 (149)
T 2f8n_K 107 IRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKKTESH 143 (149)
T ss_dssp HHHSHHHHHHTTTEEETTCCCCCCCCGGGSCC-----
T ss_pred HhccHHHHHHhcCceEcCCCCCCCccHHHcCcccccc
Confidence 9999999999999999999999999999999987654
No 14
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=99.91 E-value=1.7e-25 Score=187.40 Aligned_cols=144 Identities=33% Similarity=0.355 Sum_probs=124.6
Q ss_pred hhHHHHHhhCCccccccCCchhHHHHHHHHHHHHHHHHHhhhhcccCCcccchhhhHHHhhcc-----------------
Q psy5184 42 SRIQRYLKRGNYSERIGIGASVFLAATLEYLVAEILELAGNAASDNKKSRITPRYLMLAIKND----------------- 104 (209)
Q Consensus 42 ~ri~r~Lk~~~~~~ris~~A~VyLaAvLEYL~aEILelAgn~A~~~kk~rItP~hLq~AV~nD----------------- 104 (209)
..|+|.|++-.-...|+..|..+|...++.+...|-..|...++.++++.+|++++|.||.-.
T Consensus 7 ~yi~kvLkqv~p~~~iS~~Am~~m~s~v~di~~rIa~eA~~L~~~~~r~Tit~~eIq~Avrl~lpgeLak~Av~eG~kAv 86 (192)
T 2jss_A 7 SYIYKVLKQTHPDTGISQKSMSILNSFVNDIFERIATEASKLAAYNKKSTISAREIQTAVRLILPGELAKHAVSEGTRAV 86 (192)
T ss_dssp HHHHHHHHHHCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCHHHHHHHHHHHSCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHcccCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 368999998655568999999999999999999999988888888888889999998887411
Q ss_pred ----------------------HHHHhhhcCceec---CCCCCCcccccccccccccccccccccccccccccccccccc
Q psy5184 105 ----------------------EELAKLLCGVTIA---QGGVLPHIEPVLLTKKTNEYYIQQEYDIFTASDNKKSRITPR 159 (209)
Q Consensus 105 ----------------------~EL~~ll~~~~ia---~ggv~P~i~~~lL~~~~~~~~~~lelA~~~a~~~~k~rItPr 159 (209)
..+++++++..++ -+..+|+|++++|||++.+ |+|+|+|.|+++++++|||+
T Consensus 87 ~k~~~sk~~~s~s~ragl~fPv~ri~R~lk~~~~a~~Rv~~~A~vyLaavLEyl~~e---IlelA~n~a~~~~~~~I~p~ 163 (192)
T 2jss_A 87 TKYSSSTQAQSSSARAGLQFPVGRIKRYLKRHATGRTRVGSKAAIYLTAVLEYLTAE---VLELAGNAAKDLKVKRITPR 163 (192)
T ss_dssp HHHHHHCSSSCHHHHSSCCSCHHHHHHHHHHTTCSSCCCCTTTHHHHHHHHHHHHHH---HHHHHHHHHHHHTCSSCCHH
T ss_pred HhhccccccccccccCCCcCCHHHHHHHHHhcCccccccccChHHHHHHHHHHHHHH---HHHHHHHHHHhcCCCccCHH
Confidence 1245667665444 2788999999999999999 99999999999999999999
Q ss_pred chhhhccChHHHhhhhccccccCccccCCC
Q psy5184 160 YLMLAIKNDEELAKLLCGVTIAQGGVLPHI 189 (209)
Q Consensus 160 hl~lAi~ndeeL~~L~~~~tia~ggv~p~i 189 (209)
||++||+||+||++||+ +||++|||+|||
T Consensus 164 ~i~lAi~nD~eL~~L~~-~ti~~ggv~p~i 192 (192)
T 2jss_A 164 HLQLAIRGDDELDSLIR-ATIASGGVLPHI 192 (192)
T ss_dssp HHHHHHHTSHHHHHHHC-SCCTTTCCSSCC
T ss_pred HHHHHHhccHHHHHHHh-hhhcCCCcCCCC
Confidence 99999999999999996 799999999997
No 15
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Probab=99.89 E-value=2.5e-24 Score=216.75 Aligned_cols=100 Identities=25% Similarity=0.399 Sum_probs=83.1
Q ss_pred cccCCCCcccccccChhhHHHHHhhCCccccccCCchhHHHHHHHHHHHHHHHHHhhhhcccCCcccchhhhHHHhhccH
Q psy5184 26 AARRTRSAKANIVFPVSRIQRYLKRGNYSERIGIGASVFLAATLEYLVAEILELAGNAASDNKKSRITPRYLMLAIKNDE 105 (209)
Q Consensus 26 ~~~~s~s~RagL~FPV~ri~r~Lk~~~~~~ris~~A~VyLaAvLEYL~aEILelAgn~A~~~kk~rItP~hLq~AV~nD~ 105 (209)
....|+|+||||+||||||||+| +++|++||+++||||||||||||++||||||||+|++++++||+|+||++|+++|+
T Consensus 92 ~~~~~~~~~~~l~~pv~~~~~~l-~~~~~~r~~~~~~~y~~avleyl~~~~l~la~~~~~~~~~~~i~p~~~~~ai~~d~ 170 (1049)
T 3ksy_A 92 SAIEKRKRRNPLSLPVEKIHPLL-KEVLGYKIDHQVSVYIVAVLEYISADILKLVGNYVRNIRHYEITKQDIKVAMCADK 170 (1049)
T ss_dssp HHHTTCCCSSSCSSCHHHHHHHH-HHHHCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCHHHHHHHHHHCS
T ss_pred HhhhcccccCCccccHHHHHHHh-hcccccccCCCCcchhHHHHHHHHHHHHHHHHHHHHHcCCceecCccccccccCCH
Confidence 45579999999999999999999 88999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcCceecCCCCCCcccc
Q psy5184 106 ELAKLLCGVTIAQGGVLPHIEP 127 (209)
Q Consensus 106 EL~~ll~~~~ia~ggv~P~i~~ 127 (209)
||+.+|... ...++++|....
T Consensus 171 eL~~l~~~d-ee~~~~lp~~~~ 191 (1049)
T 3ksy_A 171 VLMDMFHQD-VEDINILSLTDE 191 (1049)
T ss_dssp SHHHHCC---------------
T ss_pred HHHHHHhhc-cccccCCCCccc
Confidence 999999654 344566665433
No 16
>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=99.83 E-value=3.2e-21 Score=145.62 Aligned_cols=81 Identities=19% Similarity=0.295 Sum_probs=62.5
Q ss_pred CCcccccccChhhHHHHHhhCCccccccCCchhHHHHHHHHHHHHHHHHHhhhhcccCCcccchhhhHHHhhccHHHHhh
Q psy5184 31 RSAKANIVFPVSRIQRYLKRGNYSERIGIGASVFLAATLEYLVAEILELAGNAASDNKKSRITPRYLMLAIKNDEELAKL 110 (209)
Q Consensus 31 ~s~RagL~FPV~ri~r~Lk~~~~~~ris~~A~VyLaAvLEYL~aEILelAgn~A~~~kk~rItP~hLq~AV~nD~EL~~l 110 (209)
++.+++++||++||+|+||.+.+..|||++||||+++++|||+.||+++|++.|+++++++|+|+||+.+|.+|++|+.|
T Consensus 4 ~~kk~~~~fPvaRIkrimK~~~~~~~vs~~A~v~la~a~E~Fi~el~~~A~~~a~~~krktI~~~di~~av~~~e~l~FL 83 (98)
T 1jfi_A 4 KKKKYNARFPPARIKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLKQCIELEGDPAAN 83 (98)
T ss_dssp ------CCCCHHHHHHHHTTSTTCCCBCTTHHHHHHHHHHHHHHHHHHHHHHHHHTC---CBCHHHHHTTCC--------
T ss_pred cccccCCCCChHHHHHHHHcCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHhcCchhhHH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999866
Q ss_pred h
Q psy5184 111 L 111 (209)
Q Consensus 111 l 111 (209)
+
T Consensus 84 ~ 84 (98)
T 1jfi_A 84 K 84 (98)
T ss_dssp -
T ss_pred H
Confidence 6
No 17
>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=99.66 E-value=8.6e-17 Score=120.99 Aligned_cols=78 Identities=21% Similarity=0.270 Sum_probs=70.5
Q ss_pred ccccccChhhHHHHHhhCCccccccCCchhHHHHHHHHHHHHHHHHHhhhhcccCCcccchhhhHHHhhccHHHHhhh
Q psy5184 34 KANIVFPVSRIQRYLKRGNYSERIGIGASVFLAATLEYLVAEILELAGNAASDNKKSRITPRYLMLAIKNDEELAKLL 111 (209)
Q Consensus 34 RagL~FPV~ri~r~Lk~~~~~~ris~~A~VyLaAvLEYL~aEILelAgn~A~~~kk~rItP~hLq~AV~nD~EL~~ll 111 (209)
-.+++||++||+|+||.+.+..||++.|++|++.++|||+.++.+.|++.|..+++++|+++||..||.+|++|+.|.
T Consensus 15 ~~~~~lP~arIkrImK~~~~~~~is~eA~~~laka~E~Fi~~l~~~A~~~a~~~krktI~~~di~~Av~~~e~~~FL~ 92 (97)
T 1n1j_B 15 FRVQELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFLI 92 (97)
T ss_dssp -----CCHHHHHHHHTTSTTCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTCGGGGGGT
T ss_pred cCCCcCCHHHHHHHHccCccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHhcCcHHHHHH
Confidence 347899999999999999998999999999999999999999999999999999999999999999999999998554
No 18
>4g92_C HAPE; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Aspergillus nidulans} PDB: 4g91_C*
Probab=99.66 E-value=9.8e-17 Score=124.91 Aligned_cols=78 Identities=19% Similarity=0.287 Sum_probs=73.3
Q ss_pred ccccChhhHHHHHhhCCccccccCCchhHHHHHHHHHHHHHHHHHhhhhcccCCcccchhhhHHHhhccHHHHhhhcCc
Q psy5184 36 NIVFPVSRIQRYLKRGNYSERIGIGASVFLAATLEYLVAEILELAGNAASDNKKSRITPRYLMLAIKNDEELAKLLCGV 114 (209)
Q Consensus 36 gL~FPV~ri~r~Lk~~~~~~ris~~A~VyLaAvLEYL~aEILelAgn~A~~~kk~rItP~hLq~AV~nD~EL~~ll~~~ 114 (209)
-.+||++||+|+||.+.+..+|+++|++|+++++|||+.+|++.|++.|..+++++|+|+||..||.+|++|+ ||.+.
T Consensus 39 ~~~lPvaRIkrImK~d~~~~~is~eA~v~la~a~E~Fi~~L~~~A~~~a~~~krktI~~~di~~Av~~~e~~d-FL~Di 116 (119)
T 4g92_C 39 IHQLPLARIKKVMKADPEVKMISAEAPILFAKGCDVFITELTMRAWIHAEDNKRRTLQRSDIAAALSKSDMFD-FLIDI 116 (119)
T ss_dssp CCSSCHHHHHHHHHTSTTCCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTCGGGG-GGTTT
T ss_pred cCCCCHHHHHHHHhhCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccCHHHHHHHHhcCchhh-HHHHh
Confidence 3469999999999999999999999999999999999999999999999999999999999999999999998 66553
No 19
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=99.51 E-value=1.8e-14 Score=109.36 Aligned_cols=77 Identities=17% Similarity=0.188 Sum_probs=70.6
Q ss_pred cccccCCCCcccccccChhhHHHHHhhCCccccccCCchhHHHHHHHHHHHHHHHHHhhhhcccCCcccchhhhHHHhhc
Q psy5184 24 SNAARRTRSAKANIVFPVSRIQRYLKRGNYSERIGIGASVFLAATLEYLVAEILELAGNAASDNKKSRITPRYLMLAIKN 103 (209)
Q Consensus 24 ~~~~~~s~s~RagL~FPV~ri~r~Lk~~~~~~ris~~A~VyLaAvLEYL~aEILelAgn~A~~~kk~rItP~hLq~AV~n 103 (209)
++.++.++++.++ ||++.|+|+++.+.+ .||+.++..+|+.+|||++.+|++.|.+.|+..++++|+++|+.+|+.+
T Consensus 17 kr~~k~~r~~~~g--ip~~~I~Rlar~~G~-~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktIt~~DV~~Alr~ 93 (103)
T 1tzy_D 17 KRHRKVLRDNIQG--ITKPAIRRLARRGGV-KRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKR 93 (103)
T ss_dssp ----CCCCCGGGG--SCHHHHHHHHHHTTC-CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred cccccchhhhccc--CCHHHHHHHHHHcCc-cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHH
Confidence 4667889999999 999999999999876 7999999999999999999999999999999999999999999999997
No 20
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A
Probab=99.51 E-value=4.9e-15 Score=118.39 Aligned_cols=85 Identities=16% Similarity=0.204 Sum_probs=60.8
Q ss_pred ccCCCCcccccccChhhHHHHHhhCCccccccCCchhHHHHHHHHHHHHHHHHHhhhh-cccCCcccchhhhHHHhhccH
Q psy5184 27 ARRTRSAKANIVFPVSRIQRYLKRGNYSERIGIGASVFLAATLEYLVAEILELAGNAA-SDNKKSRITPRYLMLAIKNDE 105 (209)
Q Consensus 27 ~~~s~s~RagL~FPV~ri~r~Lk~~~~~~ris~~A~VyLaAvLEYL~aEILelAgn~A-~~~kk~rItP~hLq~AV~nD~ 105 (209)
+..+++.+.+++||++||+|+||.+.+..+|++.|+++++.++|||+.+|.+.|.+.| ...++++|++.||..||.+++
T Consensus 8 k~~s~~~~~~~~LPlaRIKrIMK~dpdv~~Is~eA~vliakA~ElFI~~Lt~~A~~~a~~~~kRKtI~~~Dl~~AV~~~e 87 (140)
T 2byk_A 8 PPVERPPTAETFLPLSRVRTIMKSSMDTGLITNEVLFLMTKCTELFVRHLAGAAYTEEFGQRPGEALKYEHLSQVVNKNK 87 (140)
T ss_dssp ---------------------CCSSSSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCEECHHHHHHHHHTCS
T ss_pred CCCCCCcccCCCCCHHHHHHHHhcCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCHHHHHHHHhcCc
Confidence 4568889999999999999999999999999999999999999999999999999999 999999999999999999999
Q ss_pred HHHhhh
Q psy5184 106 ELAKLL 111 (209)
Q Consensus 106 EL~~ll 111 (209)
+|+.|.
T Consensus 88 ~~dFL~ 93 (140)
T 2byk_A 88 NLEFLL 93 (140)
T ss_dssp TTGGGT
T ss_pred hhhhHh
Confidence 988444
No 21
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}
Probab=99.50 E-value=2.2e-14 Score=109.00 Aligned_cols=77 Identities=17% Similarity=0.188 Sum_probs=62.2
Q ss_pred cccccCCCCcccccccChhhHHHHHhhCCccccccCCchhHHHHHHHHHHHHHHHHHhhhhcccCCcccchhhhHHHhhc
Q psy5184 24 SNAARRTRSAKANIVFPVSRIQRYLKRGNYSERIGIGASVFLAATLEYLVAEILELAGNAASDNKKSRITPRYLMLAIKN 103 (209)
Q Consensus 24 ~~~~~~s~s~RagL~FPV~ri~r~Lk~~~~~~ris~~A~VyLaAvLEYL~aEILelAgn~A~~~kk~rItP~hLq~AV~n 103 (209)
++.++++++++++ ||++.|+|+++.+.+ .||+.++..+|+.+|||++.+|++.|.+.|+..++++|+++|+.+|+.+
T Consensus 17 kr~~~~~r~~~~g--ip~~~I~Rlar~~G~-~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktvt~~DV~~Alr~ 93 (103)
T 2yfw_B 17 KRHRKILRDNIQG--ITKPAIRRLARRGGV-KRISGLIYEEVRNVLKTFLESVIRDAVTYTEHAKRKTVTSLDVVYALKR 93 (103)
T ss_dssp ---------------CCHHHHHHHHHHTTC-CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred cchhhhhhhhhcc--CCHHHHHHHHHHcCc-cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHH
Confidence 4567888999999 999999999999876 7999999999999999999999999999999999999999999999997
No 22
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Probab=99.47 E-value=7.8e-16 Score=155.09 Aligned_cols=150 Identities=11% Similarity=0.061 Sum_probs=104.5
Q ss_pred cccccccChhhHHHHHhhCCccccccCCchhHHHHHHHHHHHHHH-----------------------HHHhhhhcccCC
Q psy5184 33 AKANIVFPVSRIQRYLKRGNYSERIGIGASVFLAATLEYLVAEIL-----------------------ELAGNAASDNKK 89 (209)
Q Consensus 33 ~RagL~FPV~ri~r~Lk~~~~~~ris~~A~VyLaAvLEYL~aEIL-----------------------elAgn~A~~~kk 89 (209)
.+.||-. ..+++.+..-.-.--+..+|-.|+-..+-.|...+. .-|...|+..-.
T Consensus 18 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (1049)
T 3ksy_A 18 KWRGLLV--PALKKVQGQVHPTLESNDDALQYVEELILQLLNMLCQAQPRSASDVEERVQKSFPHPIDKWAIADAQSAIE 95 (1049)
T ss_dssp TSSSSSH--HHHHHHHHHHCTTSBCCHHHHHHHHHHHHHHHHHHHHTCCCSHHHHHHHHHHHSCTTHHHHHHHHHHHHHT
T ss_pred HHHHHHH--HHHHHHHHHhCCCCCccHhHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHhCCCchHHHHHHHHHHhhh
Confidence 3556544 347777776433334555676665544444444332 223333344446
Q ss_pred cccchhhhHHHhhccHHHHhhhcCceecC--CCCCCccccccccccccccccccccccccccccccccccccchhhhccC
Q psy5184 90 SRITPRYLMLAIKNDEELAKLLCGVTIAQ--GGVLPHIEPVLLTKKTNEYYIQQEYDIFTASDNKKSRITPRYLMLAIKN 167 (209)
Q Consensus 90 ~rItP~hLq~AV~nD~EL~~ll~~~~ia~--ggv~P~i~~~lL~~~~~~~~~~lelA~~~a~~~~k~rItPrhl~lAi~n 167 (209)
+|.+.++|+|+|++ ++++| ++.++. |..+|+|++++|||++++ |||||||+|+++++.||||||+++|++|
T Consensus 96 ~~~~~~~l~~pv~~---~~~~l-~~~~~~r~~~~~~~y~~avleyl~~~---~l~la~~~~~~~~~~~i~p~~~~~ai~~ 168 (1049)
T 3ksy_A 96 KRKRRNPLSLPVEK---IHPLL-KEVLGYKIDHQVSVYIVAVLEYISAD---ILKLVGNYVRNIRHYEITKQDIKVAMCA 168 (1049)
T ss_dssp TCCCSSSCSSCHHH---HHHHH-HHHHCSCCCHHHHHHHHHHHHHHHHH---HHHHHHHHHHHTTCCBCCHHHHHHHHHH
T ss_pred cccccCCccccHHH---HHHHh-hcccccccCCCCcchhHHHHHHHHHH---HHHHHHHHHHHcCCceecCccccccccC
Confidence 78889999999999 99999 888887 888999999999999999 9999999999999999999999999999
Q ss_pred hHHHhhhhccccccCccccCCCCcc
Q psy5184 168 DEELAKLLCGVTIAQGGVLPHIEPV 192 (209)
Q Consensus 168 deeL~~L~~~~tia~ggv~p~i~~~ 192 (209)
|+||++||+.. ...+|++|.....
T Consensus 169 d~eL~~l~~~d-ee~~~~lp~~~~~ 192 (1049)
T 3ksy_A 169 DKVLMDMFHQD-VEDINILSLTDEE 192 (1049)
T ss_dssp CSSHHHHCC----------------
T ss_pred CHHHHHHHhhc-cccccCCCCcccc
Confidence 99999999864 4567888876554
No 23
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=99.07 E-value=7.4e-12 Score=101.38 Aligned_cols=128 Identities=15% Similarity=0.137 Sum_probs=103.4
Q ss_pred ccChhhHHHHHhhCCccccccCCchhHHHHHHHHHHHHHHHHHhhhhcccCCcccchhhhHHHhhc----------cHH-
Q psy5184 38 VFPVSRIQRYLKRGNYSERIGIGASVFLAATLEYLVAEILELAGNAASDNKKSRITPRYLMLAIKN----------DEE- 106 (209)
Q Consensus 38 ~FPV~ri~r~Lk~~~~~~ris~~A~VyLaAvLEYL~aEILelAgn~A~~~kk~rItP~hLq~AV~n----------D~E- 106 (209)
-+|..-|.|+||+.--..|||.+|...|+.++|.+..+|...|.+.|...+++.|++.|+..|+.. |.+
T Consensus 4 ~LP~a~V~Riik~~lg~~rVS~dA~~~l~~~l~~f~~~i~~~A~~~a~ha~RKTv~a~DV~~a~~~lg~~~v~d~~~l~l 83 (154)
T 1f1e_A 4 ELPKAAIERIFRQGIGERRLSQDAKDTIYDFVPTMAEYVANAAKSVLDASGKKTLMEEHLKALADVLMVEGVEDYDGELF 83 (154)
T ss_dssp CCCHHHHHHHHHTTSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHHHHTCTTSTTCCSCCC
T ss_pred cCCccHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHhcccccCCccccccC
Confidence 479999999999983448999999999999999999999999999999999999999999988842 112
Q ss_pred ----HHhhhcCceecC-CCCCCccccccccccccccccccccccccccccccccccccchhhhccCh
Q psy5184 107 ----LAKLLCGVTIAQ-GGVLPHIEPVLLTKKTNEYYIQQEYDIFTASDNKKSRITPRYLMLAIKND 168 (209)
Q Consensus 107 ----L~~ll~~~~ia~-ggv~P~i~~~lL~~~~~~~~~~lelA~~~a~~~~k~rItPrhl~lAi~nd 168 (209)
+.+++++..-.. ++.++.++..+|++.... +.+.|.+.|++.+++.|||+||.+|++++
T Consensus 84 P~a~V~Ri~k~~g~~RVS~~A~~~l~~~le~f~~~---I~~~A~~~a~ha~RKTIt~eDV~~Al~~~ 147 (154)
T 1f1e_A 84 GRATVRRILKRAGIERASSDAVDLYNKLICRATEE---LGEKAAEYADEDGRKTVQGEDVEKAITYS 147 (154)
T ss_dssp CHHHHHHHHHHTTCCEECHHHHHHHHHHHHHHHHH---HHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred CccHHHHHHHHcCCccchHHHHHHHHHHHHHHHHH---HHHHHHHHHHHcCCCccCHHHHHHHHHhc
Confidence 355555431111 333444566667766666 77889999999999999999999999875
No 24
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=99.00 E-value=2.9e-10 Score=91.99 Aligned_cols=71 Identities=20% Similarity=0.164 Sum_probs=67.9
Q ss_pred cccccccChhhHHHHHhhCCccccccCCchhHHHHHHHHHHHHHHHHHhhhhcccCCcccchhhhHHHhhcc
Q psy5184 33 AKANIVFPVSRIQRYLKRGNYSERIGIGASVFLAATLEYLVAEILELAGNAASDNKKSRITPRYLMLAIKND 104 (209)
Q Consensus 33 ~RagL~FPV~ri~r~Lk~~~~~~ris~~A~VyLaAvLEYL~aEILelAgn~A~~~kk~rItP~hLq~AV~nD 104 (209)
.+.++.||++.|.|+|+++ ...|||.+|.++|+.+|||++.+|.+.|.+.|+..++++|++.|+.+|+.++
T Consensus 77 d~~~l~lP~a~V~Ri~k~~-g~~RVS~~A~~~l~~~le~f~~~I~~~A~~~a~ha~RKTIt~eDV~~Al~~~ 147 (154)
T 1f1e_A 77 DYDGELFGRATVRRILKRA-GIERASSDAVDLYNKLICRATEELGEKAAEYADEDGRKTVQGEDVEKAITYS 147 (154)
T ss_dssp TCCSCCCCHHHHHHHHHHT-TCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred ccccccCCccHHHHHHHHc-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhc
Confidence 4789999999999999998 7889999999999999999999999999999999999999999999999873
No 25
>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=98.76 E-value=1.6e-10 Score=86.92 Aligned_cols=77 Identities=10% Similarity=-0.005 Sum_probs=53.5
Q ss_pred hhhhHHHhhccHHHHhhhcCceecC--CCCCCccccccccccccccccccccccccccccccccccccchhhhccChHHH
Q psy5184 94 PRYLMLAIKNDEELAKLLCGVTIAQ--GGVLPHIEPVLLTKKTNEYYIQQEYDIFTASDNKKSRITPRYLMLAIKNDEEL 171 (209)
Q Consensus 94 P~hLq~AV~nD~EL~~ll~~~~ia~--ggv~P~i~~~lL~~~~~~~~~~lelA~~~a~~~~k~rItPrhl~lAi~ndeeL 171 (209)
...++|++.+ +.++++...... +..+|++.+..+|+...+ ++|.|++.|+++++++|+|+||.+||+|||+|
T Consensus 7 k~~~~fPvaR---IkrimK~~~~~~~vs~~A~v~la~a~E~Fi~e---l~~~A~~~a~~~krktI~~~di~~av~~~e~l 80 (98)
T 1jfi_A 7 KYNARFPPAR---IKKIMQTDEEIGKVAAAVPVIISRALELFLES---LLKKACQVTQSRNAKTMTTSHLKQCIELEGDP 80 (98)
T ss_dssp ---CCCCHHH---HHHHHTTSTTCCCBCTTHHHHHHHHHHHHHHH---HHHHHHHHHHTC---CBCHHHHHTTCC-----
T ss_pred ccCCCCChHH---HHHHHHcCccccccchHHHHHHHHHHHHHHHH---HHHHHHHHHHHcCCCeecHHHHHHHHhcCchh
Confidence 3456788888 788887654433 778899999999999999 99999999999999999999999999999999
Q ss_pred hhhhc
Q psy5184 172 AKLLC 176 (209)
Q Consensus 172 ~~L~~ 176 (209)
+.|+.
T Consensus 81 ~FL~d 85 (98)
T 1jfi_A 81 AANKA 85 (98)
T ss_dssp -----
T ss_pred hHHHh
Confidence 98874
No 26
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A
Probab=98.64 E-value=3.9e-08 Score=68.62 Aligned_cols=65 Identities=29% Similarity=0.298 Sum_probs=61.5
Q ss_pred ccChhhHHHHHhhCCccccccCCchhHHHHHHHHHHHHHHHHHhhhhcccCCcccchhhhHHHhhc
Q psy5184 38 VFPVSRIQRYLKRGNYSERIGIGASVFLAATLEYLVAEILELAGNAASDNKKSRITPRYLMLAIKN 103 (209)
Q Consensus 38 ~FPV~ri~r~Lk~~~~~~ris~~A~VyLaAvLEYL~aEILelAgn~A~~~kk~rItP~hLq~AV~n 103 (209)
.||.++|.|+|++. ...||+++|...|.-++|+++.+|.+.|...|...+++.|+|.|+++|+..
T Consensus 2 ~lP~a~v~Ri~k~~-~~~ris~~A~~~l~~a~e~fi~~l~~~A~~~a~~~kRkTI~~~Di~~A~~~ 66 (68)
T 1b67_A 2 ELPIAPIGRIIKNA-GAERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDIELARKM 66 (68)
T ss_dssp CSCHHHHHHHHHHT-TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHGGG
T ss_pred CCCccHHHHHHhcC-CcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence 48999999999998 668999999999999999999999999999999999999999999999874
No 27
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=98.49 E-value=2.3e-07 Score=70.08 Aligned_cols=77 Identities=17% Similarity=0.195 Sum_probs=64.2
Q ss_pred cccccCCCCcccccccChhhHHHHHhhCCccccccCCchhHHHHHHHHHHHHHHHHHhhhhcccCCcccchhhhHHHhhc
Q psy5184 24 SNAARRTRSAKANIVFPVSRIQRYLKRGNYSERIGIGASVFLAATLEYLVAEILELAGNAASDNKKSRITPRYLMLAIKN 103 (209)
Q Consensus 24 ~~~~~~s~s~RagL~FPV~ri~r~Lk~~~~~~ris~~A~VyLaAvLEYL~aEILelAgn~A~~~kk~rItP~hLq~AV~n 103 (209)
+|.+++.+.+..+ +|..-|.|+++... ..|||..+..-|..+|||++.+|+.-|...++..+++.|++.|+.+|+..
T Consensus 16 kr~~k~~r~~i~~--ip~~~I~Rlar~~G-v~rIS~da~~~l~~~le~fi~~I~~dA~~~a~HakRKTVt~~DV~~ALkr 92 (102)
T 1id3_B 16 KRHRKILRDNIQG--ITKPAIRRLARRGG-VKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKR 92 (102)
T ss_dssp --------CCGGG--SCHHHHHHHHHHTT-CCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred chHHHHHHhccCC--CCHHHHHHHHHHcC-chhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHH
Confidence 4556777877777 78888999999974 48999999999999999999999999999999999999999999999986
No 28
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2
Probab=98.44 E-value=2.8e-07 Score=64.70 Aligned_cols=65 Identities=26% Similarity=0.340 Sum_probs=61.2
Q ss_pred ccChhhHHHHHhhCCccccccCCchhHHHHHHHHHHHHHHHHHhhhhcccCCcccchhhhHHHhhc
Q psy5184 38 VFPVSRIQRYLKRGNYSERIGIGASVFLAATLEYLVAEILELAGNAASDNKKSRITPRYLMLAIKN 103 (209)
Q Consensus 38 ~FPV~ri~r~Lk~~~~~~ris~~A~VyLaAvLEYL~aEILelAgn~A~~~kk~rItP~hLq~AV~n 103 (209)
.||.+.|+|++++. -..|++..+...|..++|+++.+|++-|...|...+++.|++.|+++|+.+
T Consensus 6 ~lp~a~v~Rl~r~~-g~~ris~~a~~~l~e~~~~~~~~v~~dA~~~a~hakRkTI~~~DV~lA~~~ 70 (70)
T 1ku5_A 6 ELPIAPVDRLIRKA-GAERVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDIKLAIKS 70 (70)
T ss_dssp CSCHHHHHHHHHHT-TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHTC
T ss_pred cCChHHHHHHHHHc-CcceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHC
Confidence 68999999999997 368999999999999999999999999999999999999999999999864
No 29
>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=98.15 E-value=3.2e-06 Score=62.41 Aligned_cols=68 Identities=16% Similarity=0.312 Sum_probs=62.6
Q ss_pred ccccChhhHHHHHhhC-CccccccCCchhHHHHHHHHHHHHHHHHHhhhhcccCCcccchhhhHHHhhc
Q psy5184 36 NIVFPVSRIQRYLKRG-NYSERIGIGASVFLAATLEYLVAEILELAGNAASDNKKSRITPRYLMLAIKN 103 (209)
Q Consensus 36 gL~FPV~ri~r~Lk~~-~~~~ris~~A~VyLaAvLEYL~aEILelAgn~A~~~kk~rItP~hLq~AV~n 103 (209)
.+.||.++|.|+||+. ....||+.+|...|+-+.|.++.+|.+.|...|...+++.|++.|+..|+.+
T Consensus 6 d~~LP~a~i~ri~K~~~~~~~~is~dA~~~l~~a~e~Fi~~l~~~A~~~a~~~kRkTI~~~Dv~~Al~~ 74 (93)
T 1n1j_A 6 DIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMST 74 (93)
T ss_dssp -CCCCHHHHHHHHHHTSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred cccCChhHHHHHHHHhCCccceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHH
Confidence 5789999999999997 4457999999999999999999999999999999999999999999999973
No 30
>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=98.14 E-value=6e-08 Score=72.48 Aligned_cols=78 Identities=14% Similarity=0.085 Sum_probs=60.6
Q ss_pred chhhhHHHhhccHHHHhhhcCceecC--CCCCCccccccccccccccccccccccccccccccccccccchhhhccChHH
Q psy5184 93 TPRYLMLAIKNDEELAKLLCGVTIAQ--GGVLPHIEPVLLTKKTNEYYIQQEYDIFTASDNKKSRITPRYLMLAIKNDEE 170 (209)
Q Consensus 93 tP~hLq~AV~nD~EL~~ll~~~~ia~--ggv~P~i~~~lL~~~~~~~~~~lelA~~~a~~~~k~rItPrhl~lAi~ndee 170 (209)
.+..++|++.+ +.++++...... +..+|.+.+..+|+-... +.+.|.+.|.++++++|+|+||.+||++|++
T Consensus 14 ~~~~~~lP~ar---IkrImK~~~~~~~is~eA~~~laka~E~Fi~~---l~~~A~~~a~~~krktI~~~di~~Av~~~e~ 87 (97)
T 1n1j_B 14 DFRVQELPLAR---IKKIMKLDEDVKMISAEAPVLFAKAAQIFITE---LTLRAWIHTEDNKRRTLQRNDIAMAITKFDQ 87 (97)
T ss_dssp ------CCHHH---HHHHHTTSTTCCCBCTHHHHHHHHHHHHHHHH---HHHHHHHHHHHTTCSEECHHHHHHHHTTCGG
T ss_pred CcCCCcCCHHH---HHHHHccCccccccChHHHHHHHHHHHHHHHH---HHHHHHHHHHHcCCccCCHHHHHHHHhcCcH
Confidence 45667788888 778887653222 566778888889988888 8899999999999999999999999999999
Q ss_pred Hhhhhc
Q psy5184 171 LAKLLC 176 (209)
Q Consensus 171 L~~L~~ 176 (209)
|+-|..
T Consensus 88 ~~FL~d 93 (97)
T 1n1j_B 88 FDFLID 93 (97)
T ss_dssp GGGGTT
T ss_pred HHHHHh
Confidence 998774
No 31
>4g92_C HAPE; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Aspergillus nidulans} PDB: 4g91_C*
Probab=98.13 E-value=5.7e-08 Score=75.25 Aligned_cols=73 Identities=14% Similarity=0.125 Sum_probs=59.3
Q ss_pred HHHhhccHHHHhhhcCceecC--CCCCCccccccccccccccccccccccccccccccccccccchhhhccChHHHhhhh
Q psy5184 98 MLAIKNDEELAKLLCGVTIAQ--GGVLPHIEPVLLTKKTNEYYIQQEYDIFTASDNKKSRITPRYLMLAIKNDEELAKLL 175 (209)
Q Consensus 98 q~AV~nD~EL~~ll~~~~ia~--ggv~P~i~~~lL~~~~~~~~~~lelA~~~a~~~~k~rItPrhl~lAi~ndeeL~~L~ 175 (209)
+||+.+ +.++++...... +..+|++.+..+++-... +++.|.+.|.++++++|+|+||..||++|++|+ +|
T Consensus 41 ~lPvaR---IkrImK~d~~~~~is~eA~v~la~a~E~Fi~~---L~~~A~~~a~~~krktI~~~di~~Av~~~e~~d-FL 113 (119)
T 4g92_C 41 QLPLAR---IKKVMKADPEVKMISAEAPILFAKGCDVFITE---LTMRAWIHAEDNKRRTLQRSDIAAALSKSDMFD-FL 113 (119)
T ss_dssp SSCHHH---HHHHHHTSTTCCEECTHHHHHHHHHHHHHHHH---HHHHHHHHHHHTTCSEECHHHHHHHHTTCGGGG-GG
T ss_pred CCCHHH---HHHHHhhCCccccccHHHHHHHHHHHHHHHHH---HHHHHHHHHHhcccCccCHHHHHHHHhcCchhh-HH
Confidence 477777 666665432221 566788899999998888 889999999999999999999999999999998 55
Q ss_pred cc
Q psy5184 176 CG 177 (209)
Q Consensus 176 ~~ 177 (209)
.+
T Consensus 114 ~D 115 (119)
T 4g92_C 114 ID 115 (119)
T ss_dssp TT
T ss_pred HH
Confidence 55
No 32
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=98.05 E-value=9.2e-06 Score=57.89 Aligned_cols=66 Identities=18% Similarity=0.275 Sum_probs=60.6
Q ss_pred ccChhhHHHHHhhCCccccccCCchhHHHHHHHHHHHHHHHHHhhhhcccCCcccchhhhHHHhhc
Q psy5184 38 VFPVSRIQRYLKRGNYSERIGIGASVFLAATLEYLVAEILELAGNAASDNKKSRITPRYLMLAIKN 103 (209)
Q Consensus 38 ~FPV~ri~r~Lk~~~~~~ris~~A~VyLaAvLEYL~aEILelAgn~A~~~kk~rItP~hLq~AV~n 103 (209)
.||.+.|.|+|++..-..+|+..|...+.-++|-|+.+|-.-|...|+..+++.|+++|++.|+..
T Consensus 4 ~LP~A~V~rI~K~~~p~~~is~~A~~~i~~~~~~Fi~~la~eA~~~a~~~~rKTI~~~dI~~A~~~ 69 (76)
T 3b0c_W 4 TVPRGTLRKIIKKHKPHLRLAANTDLLVHLSFLLFLHRLAEEARTNAFENKSKIIKPEHTIAAAKV 69 (76)
T ss_dssp CCCHHHHHHHHHHHCTTCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHH
T ss_pred cccccHHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 589999999999643357999999999999999999999999999999999999999999999985
No 33
>2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_B
Probab=97.91 E-value=8.6e-06 Score=63.76 Aligned_cols=69 Identities=14% Similarity=0.160 Sum_probs=60.9
Q ss_pred ccccChhhHHHHHhh-CCccccccCCchhHHHHHHHHHHHHHHHHHhhhhcccCCcccchhhhHHHhhcc
Q psy5184 36 NIVFPVSRIQRYLKR-GNYSERIGIGASVFLAATLEYLVAEILELAGNAASDNKKSRITPRYLMLAIKND 104 (209)
Q Consensus 36 gL~FPV~ri~r~Lk~-~~~~~ris~~A~VyLaAvLEYL~aEILelAgn~A~~~kk~rItP~hLq~AV~nD 104 (209)
.+.||+++|.|+|++ .....+|+..|...|+-+.|.|+.+|-..|...|...+++.|++.||..|+...
T Consensus 7 d~~LP~A~I~rImK~~~pd~~~iS~dA~~~l~ka~e~FI~~lt~~A~~~a~~~kRKTI~~~Dv~~Al~~l 76 (128)
T 2byk_B 7 DLNLPNAVIGRLIKEALPESASVSKEARAAIARAASVFAIFVTSSSTALAHKQNHKTITAKDILQTLTEL 76 (128)
T ss_dssp ----CCSHHHHHHHHHSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHT
T ss_pred cccCCHHHHHHHHHHhCcccceECHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHc
Confidence 468999999999996 555689999999999999999999999999999999999999999999999973
No 34
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=97.63 E-value=0.00011 Score=53.24 Aligned_cols=70 Identities=19% Similarity=0.215 Sum_probs=63.3
Q ss_pred CCcccccccChhhHHHHHhhCCccccccCCchhHHHHHHHHHHHHHHHHHhhhhcccCCcccchhhhHHHhhc
Q psy5184 31 RSAKANIVFPVSRIQRYLKRGNYSERIGIGASVFLAATLEYLVAEILELAGNAASDNKKSRITPRYLMLAIKN 103 (209)
Q Consensus 31 ~s~RagL~FPV~ri~r~Lk~~~~~~ris~~A~VyLaAvLEYL~aEILelAgn~A~~~kk~rItP~hLq~AV~n 103 (209)
|.+..| +|..-|+|+++.+. ..|||..+..-|..+|||++.+|+.-|...++..+++.+++.++.+|+..
T Consensus 5 r~~~~~--ip~~~I~Riar~~G-v~rIs~da~~~l~~~l~~~~~~I~~dA~~~a~ha~RKTvt~~DV~~Alk~ 74 (84)
T 2hue_C 5 RDNIQG--ITKPAIRRLARRGG-VKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKR 74 (84)
T ss_dssp GGGCCS--SCHHHHHHHHHHTT-CCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTT
T ss_pred cccCCC--CCHHHHHHHHHHcC-chhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHH
Confidence 344555 78888999999975 48999999999999999999999999999999999999999999999987
No 35
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A
Probab=97.23 E-value=7.5e-06 Score=65.07 Aligned_cols=82 Identities=7% Similarity=0.003 Sum_probs=47.1
Q ss_pred CCcccchhhhHHHhhccHHHHhhhcCceecC--CCCCCccccccccccccccccccccccccc-cccccccccccchhhh
Q psy5184 88 KKSRITPRYLMLAIKNDEELAKLLCGVTIAQ--GGVLPHIEPVLLTKKTNEYYIQQEYDIFTA-SDNKKSRITPRYLMLA 164 (209)
Q Consensus 88 kk~rItP~hLq~AV~nD~EL~~ll~~~~ia~--ggv~P~i~~~lL~~~~~~~~~~lelA~~~a-~~~~k~rItPrhl~lA 164 (209)
..++.....++||+.+ +.++++...-.. +..+|++.+..+++-... +.+.|.+.| ...++++|+|+||..|
T Consensus 9 ~~s~~~~~~~~LPlaR---IKrIMK~dpdv~~Is~eA~vliakA~ElFI~~---Lt~~A~~~a~~~~kRKtI~~~Dl~~A 82 (140)
T 2byk_A 9 PVERPPTAETFLPLSR---VRTIMKSSMDTGLITNEVLFLMTKCTELFVRH---LAGAAYTEEFGQRPGEALKYEHLSQV 82 (140)
T ss_dssp -----------------------CCSSSSCSCCCHHHHHHHHHHHHHHHHH---HHHHHHHHHHTTCCSCEECHHHHHHH
T ss_pred CCCCCcccCCCCCHHH---HHHHHhcCcccccccHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhcCCcccCHHHHHHH
Confidence 3556778889999999 888886542111 444556666666666665 677789999 9999999999999999
Q ss_pred ccChHHHhhhh
Q psy5184 165 IKNDEELAKLL 175 (209)
Q Consensus 165 i~ndeeL~~L~ 175 (209)
|+++++|+-|.
T Consensus 83 V~~~e~~dFL~ 93 (140)
T 2byk_A 83 VNKNKNLEFLL 93 (140)
T ss_dssp HHTCSTTGGGT
T ss_pred HhcCchhhhHh
Confidence 99999998666
No 36
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=97.14 E-value=0.00082 Score=47.35 Aligned_cols=66 Identities=12% Similarity=0.138 Sum_probs=60.5
Q ss_pred ccccChhhHHHHHhhCCccccccCCchhHHHHHHHHHHHHHHHHHhhhhcccCCcccchhhhHHHhh
Q psy5184 36 NIVFPVSRIQRYLKRGNYSERIGIGASVFLAATLEYLVAEILELAGNAASDNKKSRITPRYLMLAIK 102 (209)
Q Consensus 36 gL~FPV~ri~r~Lk~~~~~~ris~~A~VyLaAvLEYL~aEILelAgn~A~~~kk~rItP~hLq~AV~ 102 (209)
.-.||+.-|+++.+.-. ..+|+..+...|+--+||-..||++-|.+.++..++++++..|+..|+.
T Consensus 4 ~s~lp~~~v~~iaes~G-i~~lsddaa~~LA~dvEyr~~eI~qeA~kfmrHakRk~Lt~~DI~~Alk 69 (70)
T 1taf_B 4 GSSISAESMKVIAESIG-VGSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQKLSVRDIDMSLK 69 (70)
T ss_dssp SCCCCHHHHHHHHHHTT-CCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHC
T ss_pred cccCCHHHHHHHHHHCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHc
Confidence 34699999999999854 3799999999999999999999999999999999999999999998864
No 37
>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=97.12 E-value=0.00053 Score=56.50 Aligned_cols=76 Identities=14% Similarity=0.246 Sum_probs=65.6
Q ss_pred cccccChhhHHHHHhhCCccccccCCchhHHHHHHHHHHHHHHHHHhhhhcccCCcccchhhhHHHhhccHHHHhhh
Q psy5184 35 ANIVFPVSRIQRYLKRGNYSERIGIGASVFLAATLEYLVAEILELAGNAASDNKKSRITPRYLMLAIKNDEELAKLL 111 (209)
Q Consensus 35 agL~FPV~ri~r~Lk~~~~~~ris~~A~VyLaAvLEYL~aEILelAgn~A~~~kk~rItP~hLq~AV~nD~EL~~ll 111 (209)
--+.||.+.|.|+|++.--..||+.+|...|+-+.+-|+..|-..|...|...+++.|++.||..|+.. -++..++
T Consensus 12 eD~~LP~A~V~RImK~alp~~rISkDA~~al~ec~~eFI~~LtseA~e~a~~~~RKTI~~eDVl~Al~~-LgF~~fv 87 (179)
T 1jfi_B 12 DDLTIPRAAINKMIKETLPNVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALES-LGFGSYI 87 (179)
T ss_dssp CCCCCCHHHHHHHHHHHSTTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH-HTTGGGH
T ss_pred hhhhcCHHHHHHHHHHhCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHh-cChHHHH
Confidence 457799999999999852257999999999999999999999999999999999999999999999983 4444444
No 38
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ...
Probab=96.85 E-value=0.0012 Score=51.53 Aligned_cols=65 Identities=22% Similarity=0.225 Sum_probs=57.6
Q ss_pred cccChhhHHHHHhhCCccccccCCchhHHHHHHHHHHHHHHHHHhhhhcccCCcccchhhhHHHhh
Q psy5184 37 IVFPVSRIQRYLKRGNYSERIGIGASVFLAATLEYLVAEILELAGNAASDNKKSRITPRYLMLAIK 102 (209)
Q Consensus 37 L~FPV~ri~r~Lk~~~~~~ris~~A~VyLaAvLEYL~aEILelAgn~A~~~kk~rItP~hLq~AV~ 102 (209)
-.|.+ .|+++|++-.-...|++.|.-.|...++.+...|-.-|...++-++++.|+.++||.||+
T Consensus 36 esy~~-YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvr 100 (126)
T 1tzy_B 36 ESYSI-YVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVR 100 (126)
T ss_dssp CCCHH-HHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred ccHHH-HHHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 44665 799999985444589999999999999999999999999999999999999999999997
No 39
>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T
Probab=96.71 E-value=0.0026 Score=48.36 Aligned_cols=70 Identities=9% Similarity=0.004 Sum_probs=59.9
Q ss_pred ccccChhhHHHHHhhCCccccccCCchhHHHHHHHHHHHHHHHHHhhhhcccCCcccchhhhHHHhhccHH
Q psy5184 36 NIVFPVSRIQRYLKRGNYSERIGIGASVFLAATLEYLVAEILELAGNAASDNKKSRITPRYLMLAIKNDEE 106 (209)
Q Consensus 36 gL~FPV~ri~r~Lk~~~~~~ris~~A~VyLaAvLEYL~aEILelAgn~A~~~kk~rItP~hLq~AV~nD~E 106 (209)
.+.+|-+-|.|+++++ -..|||..+...|..+++.++.+|..-|...|+..+++.|++.|+.+++.+...
T Consensus 5 d~~lP~a~I~Ri~r~~-g~~rIS~~a~~~l~e~l~~f~~~v~~da~~~A~HA~RKTV~~eDV~lalrr~g~ 74 (111)
T 3b0c_T 5 EPEIASSLIKQIFSHY-VKTPVTRDAYKIVEKCSERYFKQISSDLEAYSQHAGRKTVEMADVELLMRRQGL 74 (111)
T ss_dssp -----CHHHHHHHHHH-HCSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTS
T ss_pred CCCCCHHHHHHHHHHC-CCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHCCC
Confidence 3468999999999997 457999999999999999999999999999999999999999999999998443
No 40
>3fh2_A Probable ATP-dependent protease (heat shock prote; struct genomics, PSI2, MCSG, protein structure initiative; 1.60A {Corynebacterium glutamicum}
Probab=96.39 E-value=0.0017 Score=50.33 Aligned_cols=103 Identities=17% Similarity=0.114 Sum_probs=69.3
Q ss_pred HHHHHHHHhhhhcccCCcccchhhhHHHhhcc--HHHHhhhcCcee--cC--------CCCCCccccccccccccccccc
Q psy5184 73 VAEILELAGNAASDNKKSRITPRYLMLAIKND--EELAKLLCGVTI--AQ--------GGVLPHIEPVLLTKKTNEYYIQ 140 (209)
Q Consensus 73 ~aEILelAgn~A~~~kk~rItP~hLq~AV~nD--~EL~~ll~~~~i--a~--------ggv~P~i~~~lL~~~~~~~~~~ 140 (209)
+.++|+.|-+.|+..+...|+|.||-+++-.| ....++|...-+ .. -+..|..... -++.+.....+
T Consensus 11 ~~~~l~~A~~~A~~~~~~~i~~eHLLlaLl~~~~~~~~~iL~~~gv~~~~l~~~l~~~l~~~~~~~~~-~~~~s~~~~~v 89 (146)
T 3fh2_A 11 ARRVIVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESMGISLDAVRQEVEEIIGQGSQPTTG-HIPFTPRAKKV 89 (146)
T ss_dssp HHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHCCSHHHHHHHHTTCCHHHHHHHHHHHHCCCSCCCCS-CCCBCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCchHHHHHHHHHhCCCChHHHHHHHcCCCHHHHHHHHHHHhccCCCCCcC-CCcCCHHHHHH
Confidence 36789999999999999999999999999865 344555532111 00 0111210000 11222233348
Q ss_pred cccccccccccccccccccchhhhccChH--HHhhhhc
Q psy5184 141 QEYDIFTASDNKKSRITPRYLMLAIKNDE--ELAKLLC 176 (209)
Q Consensus 141 lelA~~~a~~~~k~rItPrhl~lAi~nde--eL~~L~~ 176 (209)
+|.|...|...+...|+++||.+|+-.|+ ...++|+
T Consensus 90 L~~A~~~a~~~~~~~i~~eHlLlall~~~~~~a~~iL~ 127 (146)
T 3fh2_A 90 LELSLREGLQMGHKYIGTEFLLLGLIREGEGVAAQVLV 127 (146)
T ss_dssp HHHHHHHHHHTTCSSBCHHHHHHHHHHHCSSHHHHHHH
T ss_pred HHHHHHHHHHcCCCcCcHHHHHHHHHhCCCcHHHHHHH
Confidence 89999999999999999999999998654 4667776
No 41
>3fes_A ATP-dependent CLP endopeptidase; alpha-helical bundles, structural genomics, PSI-2, protein S initiative; HET: PG4 EPE; 1.82A {Clostridium difficile}
Probab=96.31 E-value=0.0013 Score=51.01 Aligned_cols=102 Identities=22% Similarity=0.143 Sum_probs=69.2
Q ss_pred HHHHHHHHhhhhcccCCcccchhhhHHHhhccH--HHHhhhcCc--eecC--------CCCCCccccccccccccccccc
Q psy5184 73 VAEILELAGNAASDNKKSRITPRYLMLAIKNDE--ELAKLLCGV--TIAQ--------GGVLPHIEPVLLTKKTNEYYIQ 140 (209)
Q Consensus 73 ~aEILelAgn~A~~~kk~rItP~hLq~AV~nD~--EL~~ll~~~--~ia~--------ggv~P~i~~~lL~~~~~~~~~~ 140 (209)
+.++|+.|-+.|+..+...|+|.||-+++-.++ ...++|... .+.. -+-.|. .. --++.+.....+
T Consensus 12 a~~~l~~A~~~A~~~~~~~i~~eHLLlaLl~~~~~~~~~iL~~~gvd~~~l~~~l~~~l~~~~~-~~-~~~~~s~~~~~v 89 (145)
T 3fes_A 12 AKKAIDLAFESAKSLGHNIVGSEHILLGLLREEEGIAAKVLSKVGFTEAYLEGKIVDMEGKGEE-IS-EDIVLSPRSKQI 89 (145)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHCSSHHHHHHHHHTCCHHHHHHHHHHHHCCCSC-CC-SCCEECHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCccHHHHHHHHHhCCCChHHHHHHHcCCCHHHHHHHHHHHHhcCCC-CC-CCCCCCHHHHHH
Confidence 367899999999999999999999999998754 344444321 1100 011121 00 112223333448
Q ss_pred cccccccccccccccccccchhhhccChHH--Hhhhhc
Q psy5184 141 QEYDIFTASDNKKSRITPRYLMLAIKNDEE--LAKLLC 176 (209)
Q Consensus 141 lelA~~~a~~~~k~rItPrhl~lAi~ndee--L~~L~~ 176 (209)
+|.|...|...+...|+++||.+|+-.|++ ...+|+
T Consensus 90 l~~A~~~A~~~~~~~v~~eHlLlAll~~~~~~a~~iL~ 127 (145)
T 3fes_A 90 LELSGMFANKLKTNYIGTEHILLAIIQEGEGIANKILN 127 (145)
T ss_dssp HHHHHHHHHHTTCSSBCHHHHHHHHHHHCCHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcccHHHHHHHHHhCCCcHHHHHHH
Confidence 899999999999999999999999986653 566776
No 42
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=96.10 E-value=0.013 Score=40.83 Aligned_cols=60 Identities=23% Similarity=0.066 Sum_probs=54.9
Q ss_pred hHHHHHhhCCccccccCCchhHHHHHHHHHHHHHHHHHhhhhcccCCcccchhhhHHHhhc
Q psy5184 43 RIQRYLKRGNYSERIGIGASVFLAATLEYLVAEILELAGNAASDNKKSRITPRYLMLAIKN 103 (209)
Q Consensus 43 ri~r~Lk~~~~~~ris~~A~VyLaAvLEYL~aEILelAgn~A~~~kk~rItP~hLq~AV~n 103 (209)
-|+++|++.. ..|++..++.-|.-.+|-.+.+|+.-|...|..-+++.|+..++++||..
T Consensus 6 ~i~~iLk~~G-~~~~~~~v~~~L~e~~~ry~~~il~dA~~~a~HAgrktv~~eDVkLAi~~ 65 (68)
T 1taf_A 6 VIMSILKELN-VQEYEPRVVNQLLEFTFRYVTSILDDAKVYANHARKKTIDLDDVRLATEV 65 (68)
T ss_dssp HHHHHHHHTT-CCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHCC-CcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHh
Confidence 4789999964 47999999999999999999999999999999999999999999999974
No 43
>1khy_A CLPB protein; alpha helix, chaperone; 1.95A {Escherichia coli} SCOP: a.174.1.1
Probab=96.04 E-value=0.004 Score=47.68 Aligned_cols=104 Identities=22% Similarity=0.171 Sum_probs=65.6
Q ss_pred HHHHHHHhhhhcccCCcccchhhhHHHhhccH--HHHhhhcCcee--c--------CCCCCCccccc-cccccccccccc
Q psy5184 74 AEILELAGNAASDNKKSRITPRYLMLAIKNDE--ELAKLLCGVTI--A--------QGGVLPHIEPV-LLTKKTNEYYIQ 140 (209)
Q Consensus 74 aEILelAgn~A~~~kk~rItP~hLq~AV~nD~--EL~~ll~~~~i--a--------~ggv~P~i~~~-lL~~~~~~~~~~ 140 (209)
.++|+.|-+.|...+...|+|.||-+++-.++ ...++|...-+ . .-+-.|..... --++.+.....+
T Consensus 11 ~~~l~~A~~~A~~~~~~~i~~eHlLlaLl~~~~~~~~~iL~~~g~~~~~l~~~l~~~l~~~p~~~~~~~~~~~s~~~~~v 90 (148)
T 1khy_A 11 QLALADAQSLALGHDNQFIEPLHLMSALLNQEGGSVSPLLTSAGINAGQLRTDINQALNRLPQVEGTGGDVQPSQDLVRV 90 (148)
T ss_dssp HHHHHHHHHHHHHTTCSSBCHHHHHHHHHTCTTCSHHHHHHHHTCCHHHHHHHHHHHHTTSCCC-------CBCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCccCHHHHHHHHHcCCCchHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCCCCCCcCcCHHHHHH
Confidence 57899999999999999999999999997665 23333321100 0 00111211100 001112222237
Q ss_pred cccccccccccccccccccchhhhccC-hHHHhhhhcc
Q psy5184 141 QEYDIFTASDNKKSRITPRYLMLAIKN-DEELAKLLCG 177 (209)
Q Consensus 141 lelA~~~a~~~~k~rItPrhl~lAi~n-deeL~~L~~~ 177 (209)
++.|...|...+...|+++||.+|+-. |.....+|..
T Consensus 91 l~~A~~~a~~~~~~~i~~ehlLlall~~~~~~~~~L~~ 128 (148)
T 1khy_A 91 LNLCDKLAQKRGDNFISSELFVLAALESRGTLADILKA 128 (148)
T ss_dssp HHHHHHHHHHHTCSSBCHHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCeecHHHHHHHHHcCCcHHHHHHHH
Confidence 888999999999999999999999984 3345566653
No 44
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Probab=95.93 E-value=0.008 Score=46.61 Aligned_cols=63 Identities=24% Similarity=0.231 Sum_probs=56.1
Q ss_pred cChhhHHHHHhhCCccccccCCchhHHHHHHHHHHHHHHHHHhhhhcccCCcccchhhhHHHhh
Q psy5184 39 FPVSRIQRYLKRGNYSERIGIGASVFLAATLEYLVAEILELAGNAASDNKKSRITPRYLMLAIK 102 (209)
Q Consensus 39 FPV~ri~r~Lk~~~~~~ris~~A~VyLaAvLEYL~aEILelAgn~A~~~kk~rItP~hLq~AV~ 102 (209)
|. ..|+++|++-.-...|++.|.-.|...++.+...|-.-|.+.++-++++.|+.++||.||+
T Consensus 35 y~-~YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvr 97 (123)
T 2nqb_D 35 YA-IYIYTVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVR 97 (123)
T ss_dssp SH-HHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHH
T ss_pred HH-HHHHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHH
Confidence 44 4689999985444589999999999999999999999999999999999999999999997
No 45
>3v9r_A MHF1, uncharacterized protein YOL086W-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=95.83 E-value=0.013 Score=43.14 Aligned_cols=79 Identities=13% Similarity=0.026 Sum_probs=54.8
Q ss_pred ccccccChhhHHHHHhhCCccccccCCchhHHHHHHHHHHHHHHHHHhhhhcccCCcccchhhhHHHhhccHHHHhhhcC
Q psy5184 34 KANIVFPVSRIQRYLKRGNYSERIGIGASVFLAATLEYLVAEILELAGNAASDNKKSRITPRYLMLAIKNDEELAKLLCG 113 (209)
Q Consensus 34 RagL~FPV~ri~r~Lk~~~~~~ris~~A~VyLaAvLEYL~aEILelAgn~A~~~kk~rItP~hLq~AV~nD~EL~~ll~~ 113 (209)
++.|.|-|++|=.-.-+. ....++..+...|+-+++..+.+|.+-+-..|+.-|++.|++.++.+++++++.|..++.+
T Consensus 11 Kaal~~~V~ki~~e~~~~-~g~~vs~~~i~aL~e~~~~~~~~ia~Dl~~fA~HAgRkTI~~eDV~L~~Rrn~~L~~~l~~ 89 (90)
T 3v9r_A 11 KARLWIRVEERLQQVLSS-EDIKYTPRFINSLLELAYLQLGEMGSDLQAFARHAGRGVVNKSDLMLYLRKQPDLQERVTQ 89 (90)
T ss_dssp HHHHHHHHHHHHHHHSCS-SCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTCHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHh-cCceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhChHHHHHhhc
Confidence 456777777765433111 1124555555555555555555666666666888999999999999999999999988864
No 46
>1k6k_A ATP-dependent CLP protease ATP-binding subunit CLPA; chaperone, ATPase, adaptor binding, X-RAY, structure, N-domain, hydrolase; 1.80A {Escherichia coli} SCOP: a.174.1.1 PDB: 1r6c_X 1r6o_A* 1r6q_A* 1mg9_B* 1lzw_B* 1mbx_A* 1mbv_A 1mbu_A*
Probab=95.69 E-value=0.0043 Score=47.31 Aligned_cols=105 Identities=18% Similarity=0.211 Sum_probs=69.4
Q ss_pred HHHHHHHHhhhhcccCCcccchhhhHHHhhccHHHHhhhcCceec--C---------CCCCCccc-c--ccccccccccc
Q psy5184 73 VAEILELAGNAASDNKKSRITPRYLMLAIKNDEELAKLLCGVTIA--Q---------GGVLPHIE-P--VLLTKKTNEYY 138 (209)
Q Consensus 73 ~aEILelAgn~A~~~kk~rItP~hLq~AV~nD~EL~~ll~~~~ia--~---------ggv~P~i~-~--~lL~~~~~~~~ 138 (209)
+.++|+.|-+.|...+...|+|.||-+++-.|++..++|...-+. . +...|... . .--++.+....
T Consensus 6 ~~~~l~~A~~~A~~~~~~~i~~eHlLlaLl~~~~~~~iL~~~g~~~~~l~~~l~~~l~~~~p~~~~~~~~~~~~~s~~~~ 85 (143)
T 1k6k_A 6 LELSLNMAFARAREHRHEFMTVEHLLLALLSNPSAREALEACSVDLVALRQELEAFIEQTTPVLPASEEERDTQPTLSFQ 85 (143)
T ss_dssp HHHHHHHHHHHHHHHTBSEECHHHHHHHHTTCHHHHHHHHHTTCCHHHHHHHHHHHHHHHSCBCCSSCSCCSCEECHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCcCHHHHHHHHHcCchHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCHHHH
Confidence 357899999999999999999999999998887766666421110 0 00011111 0 00011122222
Q ss_pred cccccccccccccccccccccchhhhccChHH--Hhhhhcc
Q psy5184 139 IQQEYDIFTASDNKKSRITPRYLMLAIKNDEE--LAKLLCG 177 (209)
Q Consensus 139 ~~lelA~~~a~~~~k~rItPrhl~lAi~ndee--L~~L~~~ 177 (209)
.+++.|...|...+...|+++||.+|+-.+++ ..++|+.
T Consensus 86 ~~l~~A~~~A~~~~~~~i~~ehLLlall~~~~~~~~~iL~~ 126 (143)
T 1k6k_A 86 RVLQRAVFHVQSSGRNEVTGANVLVAIFSEQESQAAYLLRK 126 (143)
T ss_dssp HHHHHHHHHHHSSSCSCBCHHHHHHHHTTCTTSHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCccCHHHHHHHHHhCcCcHHHHHHHH
Confidence 37888999999999999999999999986543 5566653
No 47
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=95.56 E-value=0.00028 Score=53.01 Aligned_cols=59 Identities=12% Similarity=0.124 Sum_probs=44.9
Q ss_pred HHhhhcCceecC-CCCCCccccccccccccccccccccccccccccccccccccchhhhccCh
Q psy5184 107 LAKLLCGVTIAQ-GGVLPHIEPVLLTKKTNEYYIQQEYDIFTASDNKKSRITPRYLMLAIKND 168 (209)
Q Consensus 107 L~~ll~~~~ia~-ggv~P~i~~~lL~~~~~~~~~~lelA~~~a~~~~k~rItPrhl~lAi~nd 168 (209)
+.++++..-+.. +..++..+..+|++...+ |++.|++.|++.+++.|||+||.+|+++.
T Consensus 35 I~Rlar~~G~~rIs~~a~~~l~~vle~~~~~---V~~dA~~~a~hakRktIt~~DV~~Alr~~ 94 (103)
T 1tzy_D 35 IRRLARRGGVKRISGLIYEETRGVLKVFLEN---VIRDAVTYTEHAKRKTVTAMDVVYALKRQ 94 (103)
T ss_dssp HHHHHHHTTCCEECTTHHHHHHHHHHHHHHH---HHHHHHHHHHHTTCSEECHHHHHHHHHHT
T ss_pred HHHHHHHcCccccCHHHHHHHHHHHHHHHHH---HHHHHHHHHHHcCCCcCCHHHHHHHHHHc
Confidence 555555433322 444555677777777777 88999999999999999999999999865
No 48
>3zri_A CLPB protein, CLPV; chaperone, HSP100 proteins, AAA+ proteins, T6SS, secretion,; 1.80A {Vibrio cholerae} PDB: 3zrj_A
Probab=95.20 E-value=0.0093 Score=48.12 Aligned_cols=109 Identities=9% Similarity=0.038 Sum_probs=72.0
Q ss_pred hHHHHHHHHHH---HHHHHHHhhhhcccCCcccchhhhHHHhhccH--HHHhhhcCc--eec-------CCCCCCccccc
Q psy5184 63 VFLAATLEYLV---AEILELAGNAASDNKKSRITPRYLMLAIKNDE--ELAKLLCGV--TIA-------QGGVLPHIEPV 128 (209)
Q Consensus 63 VyLaAvLEYL~---aEILelAgn~A~~~kk~rItP~hLq~AV~nD~--EL~~ll~~~--~ia-------~ggv~P~i~~~ 128 (209)
+.+...++-|+ .++|+.|-+.|...+...|.|.||-+++-.|+ ...++|... .+. .-+..|.....
T Consensus 16 ~~l~~~~~kfT~~a~~aL~~A~~~A~~~~h~~I~~EHLLlaLL~~~~~~a~~iL~~~gvd~~~l~~~l~~l~~~p~~~~~ 95 (171)
T 3zri_A 16 IELPTLIAKLNAQSKLALEQAASLCIERQHPEVTLEHYLDVLLDNPLSDVRLVLKQAGLEVDQVKQAIASTYSREQVLDT 95 (171)
T ss_dssp CCHHHHHHHBCHHHHHHHHHHHHHHHHHTCSEECHHHHHHHHTTCTTSHHHHHHHHTTCCHHHHHHHHHHHSCCCCCCSS
T ss_pred hhHHHHHHHcCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHccCcHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCCC
Confidence 34677777766 58899999999999999999999999998764 234444221 000 00011110000
Q ss_pred ccccccccccccccccccccc-ccccccccccchhhhccChHHHhh
Q psy5184 129 LLTKKTNEYYIQQEYDIFTAS-DNKKSRITPRYLMLAIKNDEELAK 173 (209)
Q Consensus 129 lL~~~~~~~~~~lelA~~~a~-~~~k~rItPrhl~lAi~ndeeL~~ 173 (209)
-++.+.....+||.|...|. ..+...|+++||.+|+-.|+ +..
T Consensus 96 -~~~~S~~l~~vL~~A~~~A~l~~gd~~I~teHLLLALl~~~-~~~ 139 (171)
T 3zri_A 96 -YPAFSPLLVELLQEAWLLSSTELEQAELRSGAIFLAALTRA-DRY 139 (171)
T ss_dssp -CCEECHHHHHHHHHHHHHHHTTTCCSSBCHHHHHHHHHHTH-HHH
T ss_pred -CCCcCHHHHHHHHHHHHHHHHHcCCCEEcHHHHHHHHHhCh-hhh
Confidence 01122222338899999999 99999999999999998776 443
No 49
>3b0b_B CENP-S, centromere protein S; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus}
Probab=95.19 E-value=0.015 Score=44.03 Aligned_cols=78 Identities=12% Similarity=0.069 Sum_probs=62.1
Q ss_pred ccccccChhhHHHHHhhCCccccccCCchhHHHHHHHHHHHHHHHHHhhhhcccCCcccchhhhHHHhhccHHHHhhhc
Q psy5184 34 KANIVFPVSRIQRYLKRGNYSERIGIGASVFLAATLEYLVAEILELAGNAASDNKKSRITPRYLMLAIKNDEELAKLLC 112 (209)
Q Consensus 34 RagL~FPV~ri~r~Lk~~~~~~ris~~A~VyLaAvLEYL~aEILelAgn~A~~~kk~rItP~hLq~AV~nD~EL~~ll~ 112 (209)
++-|+|-|+||=+---.. ...|++..+...|+-+++..+.+|..-+-..|+.-|++.|++.++.+++++++.|...++
T Consensus 18 Kaal~~~V~rI~~~~g~~-~~~~vs~~~i~aL~E~~~~~~~~ia~Da~~fA~HAgRkTI~~eDV~La~Rrn~~l~~~l~ 95 (107)
T 3b0b_B 18 RAAVHYTTGCLCQDVAED-KGVLFSKQTVAAISEITFRQCENFARDLEMFARHAKRSTITSEDVKLLARRSNSLLKYIT 95 (107)
T ss_dssp HHHHHHHHHHHHHHHHHH-HTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhh-cCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcCCHHHHHHHHHhCHHHHHHHH
Confidence 566788888776543221 124888888888888888888888888888899999999999999999999998877664
No 50
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}
Probab=95.13 E-value=0.00031 Score=52.78 Aligned_cols=48 Identities=13% Similarity=0.117 Sum_probs=38.4
Q ss_pred CCCCCccccccccccccccccccccccccccccccccccccchhhhccChH
Q psy5184 119 GGVLPHIEPVLLTKKTNEYYIQQEYDIFTASDNKKSRITPRYLMLAIKNDE 169 (209)
Q Consensus 119 ggv~P~i~~~lL~~~~~~~~~~lelA~~~a~~~~k~rItPrhl~lAi~nde 169 (209)
+..++..+..+|++...+ |++.|++.|++.+++.|||+||.+|+++..
T Consensus 48 s~~a~~~l~~vle~~~~~---V~~dA~~~a~hakRktvt~~DV~~Alr~~g 95 (103)
T 2yfw_B 48 SGLIYEEVRNVLKTFLES---VIRDAVTYTEHAKRKTVTSLDVVYALKRQG 95 (103)
T ss_dssp CTTHHHHHHHHHHHHHHH---HHHHHHHHHHHTTCSEECHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHHH---HHHHHHHHHHHcCCCcCcHHHHHHHHHHcC
Confidence 334445566667776667 889999999999999999999999998653
No 51
>4dra_A Centromere protein S; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_A
Probab=95.11 E-value=0.014 Score=44.69 Aligned_cols=79 Identities=11% Similarity=0.080 Sum_probs=60.0
Q ss_pred ccccccChhhHHHHHhhCCccccccCCchhHHHHHHHHHHHHHHHHHhhhhcccCCcccchhhhHHHhhccHHHHhhhcC
Q psy5184 34 KANIVFPVSRIQRYLKRGNYSERIGIGASVFLAATLEYLVAEILELAGNAASDNKKSRITPRYLMLAIKNDEELAKLLCG 113 (209)
Q Consensus 34 RagL~FPV~ri~r~Lk~~~~~~ris~~A~VyLaAvLEYL~aEILelAgn~A~~~kk~rItP~hLq~AV~nD~EL~~ll~~ 113 (209)
++.|.|.|+||=+-.-..+ ...|+..+..-|+-+++..+.+|..-+-..|+.-|++.|++.++.+++++++.|..++++
T Consensus 26 Kaal~y~V~rIvke~gaer-~~~vS~~ai~aL~El~~~~~~~ia~Dl~~fAkHAgRkTI~~eDV~La~Rr~~~L~~~l~~ 104 (113)
T 4dra_A 26 KAAVHYTVGCLCEEVALDK-EMQFSKQTIAAISELTFRQCENFAKDLEMFARHAKRTTINTEDVKLLARRSNSLLKYITD 104 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHH-TCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHc-CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHhCHHHHHHHHH
Confidence 5678888888765332211 124777777777777777777777777777899999999999999999999999888753
No 52
>3nqj_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.10A {Homo sapiens}
Probab=94.62 E-value=0.041 Score=39.76 Aligned_cols=65 Identities=14% Similarity=0.063 Sum_probs=54.1
Q ss_pred ccChhhHHHHHhhCC------ccccccCCchhHHHHHHHHHHHHHHHHHhhhhcccCCcccchhhhHHHhh
Q psy5184 38 VFPVSRIQRYLKRGN------YSERIGIGASVFLAATLEYLVAEILELAGNAASDNKKSRITPRYLMLAIK 102 (209)
Q Consensus 38 ~FPV~ri~r~Lk~~~------~~~ris~~A~VyLaAvLEYL~aEILelAgn~A~~~kk~rItP~hLq~AV~ 102 (209)
-+|..-+.|++++-. ...|++++|...|--+.|....+++|-+...|...++..|.|.++++|.+
T Consensus 3 LI~klPF~RLVREI~~~~~~~~~~R~q~~Al~aLQea~E~ylv~Lfeda~lcAiHAkRvTi~~kDiqLa~r 73 (82)
T 3nqj_A 3 LIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARR 73 (82)
T ss_dssp SSCHHHHHHHHHHHHHHHHSSCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred CcccccHHHHHHHHHHHhccCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHHHHHHHH
Confidence 345555667766522 34699999999999999999999999998888888999999999999865
No 53
>2y1q_A CLPC N-domain, negative regulator of genetic competence CLPC/MEC; transcription, proteolysis; 1.50A {Bacillus subtilis} PDB: 2y1r_A* 2k77_A
Probab=94.43 E-value=0.0084 Score=46.03 Aligned_cols=101 Identities=19% Similarity=0.183 Sum_probs=64.9
Q ss_pred HHHHHHHhhhhcccCCcccchhhhHHHhhccHH--HHhhhcCceec----------CCCCCCcccccccccccccccccc
Q psy5184 74 AEILELAGNAASDNKKSRITPRYLMLAIKNDEE--LAKLLCGVTIA----------QGGVLPHIEPVLLTKKTNEYYIQQ 141 (209)
Q Consensus 74 aEILelAgn~A~~~kk~rItP~hLq~AV~nD~E--L~~ll~~~~ia----------~ggv~P~i~~~lL~~~~~~~~~~l 141 (209)
.++|+.|-+.|...+...|+|.||-+++-.+++ ..++|...-+. .-+-.|.... -++.+.....++
T Consensus 11 ~~al~~A~~~A~~~~h~~i~~eHlLlaLl~~~~~~~~~iL~~~g~~~~~l~~~l~~~l~~~~~~~~--~~~~s~~~~~vL 88 (150)
T 2y1q_A 11 QKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKALQALGLGSEKIQKEVESLIGRAQEMSQ--TIHYTPRAKKVI 88 (150)
T ss_dssp HHHHHHHHHHHHHTTCSEECHHHHHHHHHHHCSSHHHHHHHHTTCCHHHHHHHHHHHHCCC-------CCEECHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCccHHHHHHHHHhCCCCHHHHHHHHcCCCHHHHHHHHHHHhccCCcccc--cCCCCHHHHHHH
Confidence 578899999999999999999999999976543 44444321110 0001121100 011222223378
Q ss_pred ccccccccccccccccccchhhhccChHH--Hhhhhc
Q psy5184 142 EYDIFTASDNKKSRITPRYLMLAIKNDEE--LAKLLC 176 (209)
Q Consensus 142 elA~~~a~~~~k~rItPrhl~lAi~ndee--L~~L~~ 176 (209)
+.|...|...+...|+++||.+|+-.+++ ...+|+
T Consensus 89 ~~A~~~A~~~~~~~i~~ehlLlall~~~~~~a~~~L~ 125 (150)
T 2y1q_A 89 ELSMDEARKLGHSYVGTEHILLGLIREGEGVAARVLN 125 (150)
T ss_dssp HHHHHHHHHTTCSSBCHHHHHHHHHHHCCSHHHHHHH
T ss_pred HHHHHHHHHcCCCeecHHHHHHHHHhCCCcHHHHHHH
Confidence 88999999999999999999999986543 235554
No 54
>2hue_B Histone H3; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis}
Probab=94.41 E-value=0.056 Score=38.55 Aligned_cols=66 Identities=20% Similarity=0.199 Sum_probs=54.6
Q ss_pred cccChhhHHHHHhhC----CccccccCCchhHHHHHHHHHHHHHHHHHhhhhcccCCcccchhhhHHHhh
Q psy5184 37 IVFPVSRIQRYLKRG----NYSERIGIGASVFLAATLEYLVAEILELAGNAASDNKKSRITPRYLMLAIK 102 (209)
Q Consensus 37 L~FPV~ri~r~Lk~~----~~~~ris~~A~VyLaAvLEYL~aEILelAgn~A~~~kk~rItP~hLq~AV~ 102 (209)
|.+|..=+.|++++- .-..|++++|...|.-+.|....+++|-+...|...++..|.|.++++|..
T Consensus 2 lli~k~PF~RLVRei~~~~~~~~R~q~~Al~aLQea~Eaylv~lfeda~l~A~HAkRvTi~~kDiqLa~r 71 (77)
T 2hue_B 2 ALIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLARR 71 (77)
T ss_dssp CCSCHHHHHHHHHHHHHTTCSSCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred CccccchHHHHHHHHHHHcCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHhhHHHHHH
Confidence 345666666776652 124699999999999999999999999998889999999999999999975
No 55
>1bh9_B TAFII28; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_B*
Probab=94.16 E-value=0.06 Score=39.34 Aligned_cols=65 Identities=15% Similarity=0.285 Sum_probs=54.0
Q ss_pred ccChhhHHHHHhhCCccccccCCchhHHHHHHHHHHHHHHHHHhhhhccc-CCcccchhhhHHHhhc
Q psy5184 38 VFPVSRIQRYLKRGNYSERIGIGASVFLAATLEYLVAEILELAGNAASDN-KKSRITPRYLMLAIKN 103 (209)
Q Consensus 38 ~FPV~ri~r~Lk~~~~~~ris~~A~VyLaAvLEYL~aEILelAgn~A~~~-kk~rItP~hLq~AV~n 103 (209)
.||=..|+|+++.- ....|+....+.++++--.++.||+|.|....... ....+.|.||+-|.++
T Consensus 16 ~f~k~~vKrl~~~~-~~~~v~~~v~i~v~glaKvfVgelVE~A~~V~~~~~~~~Pl~P~HireA~rr 81 (89)
T 1bh9_B 16 AFPKAAIKRLIQSI-TGTSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMPPLQPKHMREAVRR 81 (89)
T ss_dssp CCCHHHHHHHHHHH-HSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHH-cCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHH
Confidence 36777799999774 45688988999999999999999999998886544 4558999999999876
No 56
>3vh5_A CENP-S; histone fold, chromosome segregation, DNA binding, nucleus, binding protein; 2.40A {Gallus gallus} PDB: 3vh6_A
Probab=94.11 E-value=0.039 Score=43.61 Aligned_cols=79 Identities=11% Similarity=0.080 Sum_probs=61.3
Q ss_pred ccccccChhhHHHHHhhCCccccccCCchhHHHHHHHHHHHHHHHHHhhhhcccCCcccchhhhHHHhhccHHHHhhhcC
Q psy5184 34 KANIVFPVSRIQRYLKRGNYSERIGIGASVFLAATLEYLVAEILELAGNAASDNKKSRITPRYLMLAIKNDEELAKLLCG 113 (209)
Q Consensus 34 RagL~FPV~ri~r~Lk~~~~~~ris~~A~VyLaAvLEYL~aEILelAgn~A~~~kk~rItP~hLq~AV~nD~EL~~ll~~ 113 (209)
++-|+|-|++|=.-.-.. ....|+..+...|+-+++..+.+|..-+-..|+.-+++.|++.++.+++++++.|..++++
T Consensus 18 KaAl~y~VgkIvee~~~~-~~~~vS~~ai~aL~El~~~~~e~ia~DLe~FAkHAGRKTI~~eDVkLa~Rrn~~L~~~L~~ 96 (140)
T 3vh5_A 18 RAAVHYTTGALAQDVAED-KGVLFSKQTVAAISEITFRQAENFARDLEMFARHAKRSTITSEDVKLLARRSNSLLKYITQ 96 (140)
T ss_dssp HHHHHHHHHHHHHHHHHH-HTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh-cCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhCHHHHHHHHH
Confidence 567888888876543221 1235777777777777777777777777777899999999999999999999999888854
No 57
>3r45_A Histone H3-like centromeric protein A; histone fold, centromere, CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens}
Probab=93.87 E-value=0.045 Score=44.01 Aligned_cols=69 Identities=13% Similarity=0.082 Sum_probs=59.0
Q ss_pred ccccccChhhHHHHHhhCC------ccccccCCchhHHHHHHHHHHHHHHHHHhhhhcccCCcccchhhhHHHhh
Q psy5184 34 KANIVFPVSRIQRYLKRGN------YSERIGIGASVFLAATLEYLVAEILELAGNAASDNKKSRITPRYLMLAIK 102 (209)
Q Consensus 34 RagL~FPV~ri~r~Lk~~~------~~~ris~~A~VyLaAvLEYL~aEILelAgn~A~~~kk~rItP~hLq~AV~ 102 (209)
-..|.+|..-|.|++++-. ...|+..+|...|--+.|..+.+++|-|...|...++..|.|.||++|..
T Consensus 73 SteLLIpKlPF~RLVREIa~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEdanLcAiHAkRVTIm~kDIqLArr 147 (156)
T 3r45_A 73 STHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARR 147 (156)
T ss_dssp --CCCSCHHHHHHHHHHHHHTTTTTCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSEECHHHHHHHHH
T ss_pred ccccccccccHHHHHHHHHHHhccCccceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHHH
Confidence 3568889888999988622 24699999999999999999999999998888888999999999999876
No 58
>3nqu_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.50A {Homo sapiens} PDB: 3an2_A
Probab=93.87 E-value=0.056 Score=42.72 Aligned_cols=69 Identities=13% Similarity=0.082 Sum_probs=58.9
Q ss_pred ccccccChhhHHHHHhhCC------ccccccCCchhHHHHHHHHHHHHHHHHHhhhhcccCCcccchhhhHHHhh
Q psy5184 34 KANIVFPVSRIQRYLKRGN------YSERIGIGASVFLAATLEYLVAEILELAGNAASDNKKSRITPRYLMLAIK 102 (209)
Q Consensus 34 RagL~FPV~ri~r~Lk~~~------~~~ris~~A~VyLaAvLEYL~aEILelAgn~A~~~kk~rItP~hLq~AV~ 102 (209)
-..|.+|..-|.|++++-. ...|+.++|...|--+.|....+++|-|...|...++..|.|.||++|..
T Consensus 57 st~LLIpKlPF~RLVREI~~~~~~~~~~Rfq~~Al~ALQEAaEayLv~LFEdanlcAiHAkRVTIm~kDiqLArr 131 (140)
T 3nqu_A 57 STHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARR 131 (140)
T ss_dssp --CCCSCTTHHHHHHHHHHHHHHTTCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred ccccccccccHHHHHHHHHHHhcccccceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHHH
Confidence 3567888888888888632 24699999999999999999999999998888888999999999999875
No 59
>2yfv_A Histone H3-like centromeric protein CSE4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.32A {Kluyveromyces lactis nrrl y-1140} PDB: 2yfw_A
Probab=93.15 E-value=0.086 Score=39.37 Aligned_cols=69 Identities=19% Similarity=0.182 Sum_probs=55.8
Q ss_pred ccccccChhhHHHHHhhCC--c-----cccccCCchhHHHHHHHHHHHHHHHHHhhhhcccCCcccchhhhHHHhh
Q psy5184 34 KANIVFPVSRIQRYLKRGN--Y-----SERIGIGASVFLAATLEYLVAEILELAGNAASDNKKSRITPRYLMLAIK 102 (209)
Q Consensus 34 RagL~FPV~ri~r~Lk~~~--~-----~~ris~~A~VyLaAvLEYL~aEILelAgn~A~~~kk~rItP~hLq~AV~ 102 (209)
-..|.+|..-|.|++++-. + ..|++++|...|.-+.|....+++|-+...|...++..|.|.|+++|..
T Consensus 23 st~llIpk~PF~RLVREI~~~~~~~~~~~R~q~~Al~ALQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~r 98 (100)
T 2yfv_A 23 STDLLISRMPFARLVKEVTDQFTTESEPLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMRKDMQLARR 98 (100)
T ss_dssp -----CCHHHHHHHHHHHHHTTC-----CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred cchhhhccccHHHHHHHHHHHhccccchhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHH
Confidence 3578899988999888621 1 4699999999999999999999999998889999999999999999864
No 60
>1tzy_C Histone H3; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_C 1hq3_C 2aro_C 2f8n_A 2hio_C 3av1_A 3lel_A 3afa_A 3azi_A 3azj_A 3azk_A 3azl_A 3azm_A 3azn_A 2cv5_A* 1u35_A* 2nqb_A 2io5_B 2pyo_A* 3c9k_C ...
Probab=93.08 E-value=0.12 Score=40.64 Aligned_cols=68 Identities=19% Similarity=0.215 Sum_probs=58.8
Q ss_pred cccccChhhHHHHHhhC----CccccccCCchhHHHHHHHHHHHHHHHHHhhhhcccCCcccchhhhHHHhh
Q psy5184 35 ANIVFPVSRIQRYLKRG----NYSERIGIGASVFLAATLEYLVAEILELAGNAASDNKKSRITPRYLMLAIK 102 (209)
Q Consensus 35 agL~FPV~ri~r~Lk~~----~~~~ris~~A~VyLaAvLEYL~aEILelAgn~A~~~kk~rItP~hLq~AV~ 102 (209)
..|.+|..-|.|++++- .-..|+.++|...|.-+.|....+++|-+...|...++..|.|.||+++..
T Consensus 59 t~lLIpk~PF~RLVREI~~~~~~~~R~q~~Al~aLQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~r 130 (136)
T 1tzy_C 59 TELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 130 (136)
T ss_dssp CSCCSCHHHHHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred hhhhhccchHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHhHHHHHH
Confidence 46778888888888763 123699999999999999999999999998889999999999999999975
No 61
>3b0b_C CENP-X, centromere protein X; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus} PDB: 3vh5_D 3vh6_D
Probab=91.88 E-value=0.25 Score=35.43 Aligned_cols=65 Identities=17% Similarity=0.167 Sum_probs=55.5
Q ss_pred ccccChhhHHHHHhhC--CccccccCCchhHHHHHHHHHHHHHHHHHhhhhcccCCcccchhhhHHH
Q psy5184 36 NIVFPVSRIQRYLKRG--NYSERIGIGASVFLAATLEYLVAEILELAGNAASDNKKSRITPRYLMLA 100 (209)
Q Consensus 36 gL~FPV~ri~r~Lk~~--~~~~ris~~A~VyLaAvLEYL~aEILelAgn~A~~~kk~rItP~hLq~A 100 (209)
+-.||..-|+++|+.. +..-||+.+|-.-++..|+-|+.|-+..|...|...+...+...||+..
T Consensus 6 ~~~~~~~lI~ril~~~f~~~ktrI~~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~~~LEki 72 (81)
T 3b0b_C 6 EGGFRKETVERLLRLHFRDGRTRVNGDALLLMAELLKVFVREAAARAARQAQAEDLEKVDIEHVEKV 72 (81)
T ss_dssp -CCCCHHHHHHHHHHHCCSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeecHHHHHHH
Confidence 4569999999999972 1234999999999999999999999999999988888888999999863
No 62
>4dra_E Centromere protein X; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_J
Probab=91.30 E-value=0.37 Score=34.82 Aligned_cols=67 Identities=16% Similarity=0.081 Sum_probs=55.0
Q ss_pred ccccccChhhHHHHHhhCC--ccccccCCchhHHHHHHHHHHHHHHHHHhhhhcccCCcccchhhhHHH
Q psy5184 34 KANIVFPVSRIQRYLKRGN--YSERIGIGASVFLAATLEYLVAEILELAGNAASDNKKSRITPRYLMLA 100 (209)
Q Consensus 34 RagL~FPV~ri~r~Lk~~~--~~~ris~~A~VyLaAvLEYL~aEILelAgn~A~~~kk~rItP~hLq~A 100 (209)
.++..||..-|.|+|+..- ..-||+.+|-.-++..|+-|+.|-+-.|...|...+...+...||+-.
T Consensus 8 ~~~~~i~~~li~ril~~~F~~~kTkIs~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~e~LEki 76 (84)
T 4dra_E 8 GAGSGFRKELVSRLLHLHFKDDKTKVSGDALQLMVELLKVFVVEAAVRGVRQAQAEDALRVDVDQLEKV 76 (84)
T ss_dssp ---CCCCHHHHHHHHHTTCSSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHH
Confidence 3566899999999999521 224999999999999999999999999998888777778999998864
No 63
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=91.12 E-value=0.31 Score=37.53 Aligned_cols=50 Identities=18% Similarity=0.163 Sum_probs=47.0
Q ss_pred cccccCCchhHHHHHHHHHHHHHHHHHhhhhcccCCcccchhhhHHHhhc
Q psy5184 54 SERIGIGASVFLAATLEYLVAEILELAGNAASDNKKSRITPRYLMLAIKN 103 (209)
Q Consensus 54 ~~ris~~A~VyLaAvLEYL~aEILelAgn~A~~~kk~rItP~hLq~AV~n 103 (209)
..|||.++-.-+..+||.+..+|+.-|...+...+++.++..|+.+|+.+
T Consensus 62 vkRIS~~iy~e~r~vl~~~l~~i~rdav~yaehA~RKTVta~DV~~Alkr 111 (121)
T 2ly8_A 62 SKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKR 111 (121)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCBCHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHh
Confidence 36999999999999999999999999999999999999999999999875
No 64
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=90.08 E-value=0.18 Score=42.92 Aligned_cols=59 Identities=15% Similarity=0.128 Sum_probs=53.3
Q ss_pred HHHHHhhCCccccccCCchhHHHHHHHHHHHHHHHHHhhhhcccCCcccchhhhHHHhhc
Q psy5184 44 IQRYLKRGNYSERIGIGASVFLAATLEYLVAEILELAGNAASDNKKSRITPRYLMLAIKN 103 (209)
Q Consensus 44 i~r~Lk~~~~~~ris~~A~VyLaAvLEYL~aEILelAgn~A~~~kk~rItP~hLq~AV~n 103 (209)
+.|+.+.+. ..|||..+-.-+..+||.+..+|+.-|...+...+++.+++.++.+|+.+
T Consensus 167 ~~RlaRrgG-VkRIS~~iyeelr~vLe~fle~IirdAv~yaeHA~RKTVta~DV~~ALKr 225 (235)
T 2l5a_A 167 DEEDGDKGG-VKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKR 225 (235)
T ss_dssp CCTTSCCTT-CCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHH
T ss_pred HHHHhhcCC-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHh
Confidence 446777764 48999999999999999999999999999999999999999999999986
No 65
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=89.45 E-value=0.12 Score=47.21 Aligned_cols=96 Identities=17% Similarity=0.115 Sum_probs=63.9
Q ss_pred HHHHHHHHhhhhcccCCcccchhhhHHHhhcc--HHHHhhhcC--ceec--------CCCCCCccccccccccccccccc
Q psy5184 73 VAEILELAGNAASDNKKSRITPRYLMLAIKND--EELAKLLCG--VTIA--------QGGVLPHIEPVLLTKKTNEYYIQ 140 (209)
Q Consensus 73 ~aEILelAgn~A~~~kk~rItP~hLq~AV~nD--~EL~~ll~~--~~ia--------~ggv~P~i~~~lL~~~~~~~~~~ 140 (209)
+.++|+.|-..|+..+...|+|.||-+++-.+ .....+|.. +.+. .-+..|.... -++.+.....+
T Consensus 10 a~~al~~A~~~A~~~~h~~v~~eHLLlaLl~~~~~~~~~iL~~~gvd~~~l~~~l~~~l~~~~~~~~--~~~~S~~~~~v 87 (468)
T 3pxg_A 10 AQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKALQALGLGSEKIQKEVESLIGRGQEMSQ--TIHYTPRAKKV 87 (468)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHHHSCCSHHHHHHHHHTCCHHHHHHHHHTTSCCCCTTCS--SCEECHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCcccHHHHHHHHHhccCcHHHHHHHHcCCCHHHHHHHHHHHhcccCCCCC--CCCCCHHHHHH
Confidence 35788999999999999999999999999765 334444432 1110 0011111000 01222223348
Q ss_pred cccccccccccccccccccchhhhccChHH
Q psy5184 141 QEYDIFTASDNKKSRITPRYLMLAIKNDEE 170 (209)
Q Consensus 141 lelA~~~a~~~~k~rItPrhl~lAi~ndee 170 (209)
|+.|...|...+...|.++||.||+-.+++
T Consensus 88 L~~A~~~A~~~g~~~I~teHLLlaLl~~~~ 117 (468)
T 3pxg_A 88 IELSMDEARKLGHSYVGTEHILLGLIREGE 117 (468)
T ss_dssp HHHHHHHHHTTTCSSBCHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHcCCCeecHHHHHHHHHhccc
Confidence 899999999999999999999999976653
No 66
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=88.66 E-value=0.074 Score=51.02 Aligned_cols=98 Identities=16% Similarity=0.217 Sum_probs=66.7
Q ss_pred HHHHHHHHhhhhcccCCcccchhhhHHHhhccHHHHhhhcCcee--cC---------CCCCCccccc---cccccccccc
Q psy5184 73 VAEILELAGNAASDNKKSRITPRYLMLAIKNDEELAKLLCGVTI--AQ---------GGVLPHIEPV---LLTKKTNEYY 138 (209)
Q Consensus 73 ~aEILelAgn~A~~~kk~rItP~hLq~AV~nD~EL~~ll~~~~i--a~---------ggv~P~i~~~---lL~~~~~~~~ 138 (209)
+.++|+.|-+.|+..+...|+|.||-+++-.|++...+|...-+ .. +...|..... -.++.+....
T Consensus 6 a~~~l~~A~~~A~~~~h~~i~~eHLLlaLl~~~~~~~iL~~~gvd~~~l~~~l~~~l~~~~p~~~~~~~~~~~~~s~~~~ 85 (758)
T 1r6b_X 6 LELSLNMAFARAREHRHEFMTVEHLLLALLSNPSAREALEACSVDLVALRQELEAFIEQTTPVLPASEEERDTQPTLSFQ 85 (758)
T ss_dssp HHHHHHHHHHHHHHTTBSEECHHHHHHHHTTSHHHHHHHHHTTCCHHHHHHHHHHHHHHHSCBCCCSSSCCCCEECHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHhccCCCCCCccccCCCCcCHHHH
Confidence 35788999999999999999999999999988877766642111 00 0001211000 0011111223
Q ss_pred cccccccccccccccccccccchhhhccChHH
Q psy5184 139 IQQEYDIFTASDNKKSRITPRYLMLAIKNDEE 170 (209)
Q Consensus 139 ~~lelA~~~a~~~~k~rItPrhl~lAi~ndee 170 (209)
.+||.|...|...+...|+++||.+|+-.+++
T Consensus 86 ~vl~~A~~~a~~~~~~~I~~ehlLlall~~~~ 117 (758)
T 1r6b_X 86 RVLQRAVFHVQSSGRNEVTGANVLVAIFSEQE 117 (758)
T ss_dssp HHHHHHHHHHHHHTCSSBCHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHcCCCEeeHHHHHHHHhcccc
Confidence 37899999999999999999999999987653
No 67
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=86.94 E-value=0.092 Score=50.57 Aligned_cols=96 Identities=17% Similarity=0.115 Sum_probs=63.7
Q ss_pred HHHHHHHHhhhhcccCCcccchhhhHHHhhcc--HHHHhhhcC--ceec--------CCCCCCccccccccccccccccc
Q psy5184 73 VAEILELAGNAASDNKKSRITPRYLMLAIKND--EELAKLLCG--VTIA--------QGGVLPHIEPVLLTKKTNEYYIQ 140 (209)
Q Consensus 73 ~aEILelAgn~A~~~kk~rItP~hLq~AV~nD--~EL~~ll~~--~~ia--------~ggv~P~i~~~lL~~~~~~~~~~ 140 (209)
+.++|+.|-+.|+..+...|+|.||-+++-.+ ....++|.. +.+. .-+-.|.... -++.+.....+
T Consensus 10 a~~~l~~A~~~A~~~~h~~i~~eHlLlaLl~~~~~~~~~iL~~~gvd~~~l~~~l~~~l~~~~~~~~--~~~~s~~~~~v 87 (758)
T 3pxi_A 10 AQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKALQALGLGSEKIQKEVESLIGRGQEMSQ--TIHYTPRAKKV 87 (758)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHHHSCCSHHHHHHHHHTCCHHHHHHHHHTTSCCCCTTCS--SCEECHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCcccHHHHHHHHHhccCcHHHHHHHHcCCCHHHHHHHHHHHhccCCCCCC--CCCCCHHHHHH
Confidence 35788999999999999999999999999765 334444422 1110 0011111000 01122222338
Q ss_pred cccccccccccccccccccchhhhccChHH
Q psy5184 141 QEYDIFTASDNKKSRITPRYLMLAIKNDEE 170 (209)
Q Consensus 141 lelA~~~a~~~~k~rItPrhl~lAi~ndee 170 (209)
||.|...|...+...|.++||.+|+-.+++
T Consensus 88 l~~A~~~A~~~~~~~I~~ehlLlall~~~~ 117 (758)
T 3pxi_A 88 IELSMDEARKLGHSYVGTEHILLGLIREGE 117 (758)
T ss_dssp HHHHHHHHHTTTCSSBCHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHcCCCcccHHHHHHHHHhcCC
Confidence 899999999999999999999999976643
No 68
>1k6k_A ATP-dependent CLP protease ATP-binding subunit CLPA; chaperone, ATPase, adaptor binding, X-RAY, structure, N-domain, hydrolase; 1.80A {Escherichia coli} SCOP: a.174.1.1 PDB: 1r6c_X 1r6o_A* 1r6q_A* 1mg9_B* 1lzw_B* 1mbx_A* 1mbv_A 1mbu_A*
Probab=80.09 E-value=0.25 Score=37.27 Aligned_cols=38 Identities=16% Similarity=0.192 Sum_probs=33.2
Q ss_pred ccccccccccccccccccccchhhhccChHHHhhhhcc
Q psy5184 140 QQEYDIFTASDNKKSRITPRYLMLAIKNDEELAKLLCG 177 (209)
Q Consensus 140 ~lelA~~~a~~~~k~rItPrhl~lAi~ndeeL~~L~~~ 177 (209)
+++.|...|...+-..|+|+||.+|+-++++...+|+.
T Consensus 9 ~l~~A~~~A~~~~~~~i~~eHlLlaLl~~~~~~~iL~~ 46 (143)
T 1k6k_A 9 SLNMAFARAREHRHEFMTVEHLLLALLSNPSAREALEA 46 (143)
T ss_dssp HHHHHHHHHHHHTBSEECHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCcCHHHHHHHHHcCchHHHHHHH
Confidence 67889999999999999999999999988777777753
No 69
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=79.90 E-value=2.7 Score=29.66 Aligned_cols=66 Identities=14% Similarity=0.232 Sum_probs=58.1
Q ss_pred ccChhhHHHHHhhCCccccccCCchhHHHHHHHHHHHHHHHHHhhhhcccCCcccchhhhHHHhhc
Q psy5184 38 VFPVSRIQRYLKRGNYSERIGIGASVFLAATLEYLVAEILELAGNAASDNKKSRITPRYLMLAIKN 103 (209)
Q Consensus 38 ~FPV~ri~r~Lk~~~~~~ris~~A~VyLaAvLEYL~aEILelAgn~A~~~kk~rItP~hLq~AV~n 103 (209)
.++-.+++.++++-.-...+...+--.|.-+-+=|+..+++.|+..|+..+...+...++++...+
T Consensus 5 vl~k~~L~~Lv~~idp~~~ld~~vee~ll~lADdFV~~V~~~ac~lAKhR~s~~le~kDvql~Ler 70 (76)
T 1h3o_B 5 VLTKKKLQDLVREVDPNEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLER 70 (76)
T ss_dssp SSCHHHHHHHHHHHCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHH
T ss_pred cccHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHh
Confidence 467778999998854556888889999999999999999999999999999999999999998776
No 70
>3fh2_A Probable ATP-dependent protease (heat shock prote; struct genomics, PSI2, MCSG, protein structure initiative; 1.60A {Corynebacterium glutamicum}
Probab=79.52 E-value=0.21 Score=38.25 Aligned_cols=47 Identities=15% Similarity=0.021 Sum_probs=36.2
Q ss_pred ccccccccccccccccccccccccccccccchhhhccCh--HHHhhhhc
Q psy5184 130 LTKKTNEYYIQQEYDIFTASDNKKSRITPRYLMLAIKND--EELAKLLC 176 (209)
Q Consensus 130 L~~~~~~~~~~lelA~~~a~~~~k~rItPrhl~lAi~nd--eeL~~L~~ 176 (209)
+++.+.....+++.|.+.|...+-..|+|+||.+|+-.+ ....++|.
T Consensus 4 ~~~~t~~~~~~l~~A~~~A~~~~~~~i~~eHLLlaLl~~~~~~~~~iL~ 52 (146)
T 3fh2_A 4 FERFTDRARRVIVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALE 52 (146)
T ss_dssp GGGBCHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHCCSHHHHHHH
T ss_pred hhhcCHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHhCCCChHHHHHH
Confidence 344444555588999999999999999999999999865 34555654
No 71
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=78.48 E-value=0.44 Score=46.66 Aligned_cols=97 Identities=20% Similarity=0.070 Sum_probs=63.0
Q ss_pred HHHHHHHHhhhhcccCCcccchhhhHHHhhccHH--HHhhhcCceec--C--------CCCCCcccc-cccccccccccc
Q psy5184 73 VAEILELAGNAASDNKKSRITPRYLMLAIKNDEE--LAKLLCGVTIA--Q--------GGVLPHIEP-VLLTKKTNEYYI 139 (209)
Q Consensus 73 ~aEILelAgn~A~~~kk~rItP~hLq~AV~nD~E--L~~ll~~~~ia--~--------ggv~P~i~~-~lL~~~~~~~~~ 139 (209)
+.++|+.|-+.|...+...|+|.||-+++-.+++ +..+|...-+. . -+-.|.... .--++.+.....
T Consensus 10 a~~al~~A~~~A~~~~h~~i~~eHLLlaLl~~~~~~~~~iL~~~gvd~~~l~~~l~~~l~~~p~~~~~~~~~~~S~~~~~ 89 (854)
T 1qvr_A 10 AREALAQAQVLAQRMKHQAIDLPHLWAVLLKDERSLAWRLLEKAGADPKALKELQERELARLPKVEGAEVGQYLTSRLSG 89 (854)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHCCSSSSHHHHHHHTTSSCHHHHHHHHHHHHHTSCCCCGGGTTCEECHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCccHHHHHHHHHhCCCcHHHHHHHHcCCCHHHHHHHHHHHHhhCCCCCCCCCCCCCCHHHHH
Confidence 3578899999999999999999999999976543 34444321110 0 001121100 000111222233
Q ss_pred ccccccccccccccccccccchhhhccChH
Q psy5184 140 QQEYDIFTASDNKKSRITPRYLMLAIKNDE 169 (209)
Q Consensus 140 ~lelA~~~a~~~~k~rItPrhl~lAi~nde 169 (209)
+||.|...|...+...|+++||.+|+-.++
T Consensus 90 vL~~A~~~a~~~g~~~I~~ehlLlall~~~ 119 (854)
T 1qvr_A 90 ALNRAEGLMEELKDRYVAVDTLVLALAEAT 119 (854)
T ss_dssp HHHHHHHHHHTTTCSSCCHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcCCcEeeHHHHHHHHHhcc
Confidence 789999999999999999999999998654
No 72
>2y1q_A CLPC N-domain, negative regulator of genetic competence CLPC/MEC; transcription, proteolysis; 1.50A {Bacillus subtilis} PDB: 2y1r_A* 2k77_A
Probab=77.60 E-value=0.16 Score=38.64 Aligned_cols=44 Identities=18% Similarity=0.047 Sum_probs=34.3
Q ss_pred cccccccccccccccccccccccccccchhhhccChHH--Hhhhhc
Q psy5184 133 KTNEYYIQQEYDIFTASDNKKSRITPRYLMLAIKNDEE--LAKLLC 176 (209)
Q Consensus 133 ~~~~~~~~lelA~~~a~~~~k~rItPrhl~lAi~ndee--L~~L~~ 176 (209)
.+.+.+.+++.|.+.|...+-..|+|+||.+|+-++++ ...+|.
T Consensus 6 ~t~~~~~al~~A~~~A~~~~h~~i~~eHlLlaLl~~~~~~~~~iL~ 51 (150)
T 2y1q_A 6 FTERAQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKALQ 51 (150)
T ss_dssp BCHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHCSSHHHHHHH
T ss_pred hCHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHhCCCCHHHHHHH
Confidence 34444457888999999999999999999999986654 455554
No 73
>1khy_A CLPB protein; alpha helix, chaperone; 1.95A {Escherichia coli} SCOP: a.174.1.1
Probab=76.77 E-value=0.29 Score=37.01 Aligned_cols=43 Identities=28% Similarity=0.291 Sum_probs=32.9
Q ss_pred ccccccccccccccccccccccccccchhhhccChH--HHhhhhc
Q psy5184 134 TNEYYIQQEYDIFTASDNKKSRITPRYLMLAIKNDE--ELAKLLC 176 (209)
Q Consensus 134 ~~~~~~~lelA~~~a~~~~k~rItPrhl~lAi~nde--eL~~L~~ 176 (209)
+.....+++.|...|...+-..|+|+||.+|+-+++ ....+|.
T Consensus 7 t~~~~~~l~~A~~~A~~~~~~~i~~eHlLlaLl~~~~~~~~~iL~ 51 (148)
T 1khy_A 7 TNKFQLALADAQSLALGHDNQFIEPLHLMSALLNQEGGSVSPLLT 51 (148)
T ss_dssp CHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHTCTTCSHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHcCCCchHHHHHH
Confidence 333344788999999999999999999999997665 2344443
No 74
>3zri_A CLPB protein, CLPV; chaperone, HSP100 proteins, AAA+ proteins, T6SS, secretion,; 1.80A {Vibrio cholerae} PDB: 3zrj_A
Probab=75.06 E-value=0.3 Score=39.12 Aligned_cols=55 Identities=11% Similarity=0.125 Sum_probs=42.8
Q ss_pred CCccccccccccccccccccccccccccccccccccccchhhhccChH--HHhhhhc
Q psy5184 122 LPHIEPVLLTKKTNEYYIQQEYDIFTASDNKKSRITPRYLMLAIKNDE--ELAKLLC 176 (209)
Q Consensus 122 ~P~i~~~lL~~~~~~~~~~lelA~~~a~~~~k~rItPrhl~lAi~nde--eL~~L~~ 176 (209)
+-+....++++.+...+.+++.|.+.|...+-..|+|+||.+|+-.++ ....+|.
T Consensus 14 ~~~~l~~~~~kfT~~a~~aL~~A~~~A~~~~h~~I~~EHLLlaLL~~~~~~a~~iL~ 70 (171)
T 3zri_A 14 IRIELPTLIAKLNAQSKLALEQAASLCIERQHPEVTLEHYLDVLLDNPLSDVRLVLK 70 (171)
T ss_dssp CCCCHHHHHHHBCHHHHHHHHHHHHHHHHHTCSEECHHHHHHHHTTCTTSHHHHHHH
T ss_pred hhhhHHHHHHHcCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHccCcHHHHHHH
Confidence 334456666667777667899999999999999999999999998764 3455554
No 75
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2
Probab=73.27 E-value=0.43 Score=32.65 Aligned_cols=28 Identities=18% Similarity=0.150 Sum_probs=24.7
Q ss_pred ccccccccccccccccccccchhhhccC
Q psy5184 140 QQEYDIFTASDNKKSRITPRYLMLAIKN 167 (209)
Q Consensus 140 ~lelA~~~a~~~~k~rItPrhl~lAi~n 167 (209)
+++-|..-|.+.+++.|+|+++++|+++
T Consensus 43 v~~dA~~~a~hakRkTI~~~DV~lA~~~ 70 (70)
T 1ku5_A 43 IAKKAVEFARHAGRKTVKVEDIKLAIKS 70 (70)
T ss_dssp HHHHHHHHHHTTTCSEECHHHHHHHHTC
T ss_pred HHHHHHHHHHHcCCCcCCHHHHHHHHHC
Confidence 5666888889999999999999999975
No 76
>3fes_A ATP-dependent CLP endopeptidase; alpha-helical bundles, structural genomics, PSI-2, protein S initiative; HET: PG4 EPE; 1.82A {Clostridium difficile}
Probab=71.92 E-value=0.25 Score=37.87 Aligned_cols=43 Identities=16% Similarity=0.155 Sum_probs=34.0
Q ss_pred ccccccccccccccccccccccccccchhhhccChH--HHhhhhc
Q psy5184 134 TNEYYIQQEYDIFTASDNKKSRITPRYLMLAIKNDE--ELAKLLC 176 (209)
Q Consensus 134 ~~~~~~~lelA~~~a~~~~k~rItPrhl~lAi~nde--eL~~L~~ 176 (209)
+.....+++.|.+.|...+-..|+|+||.+|+-+++ ....+|.
T Consensus 9 T~~a~~~l~~A~~~A~~~~~~~i~~eHLLlaLl~~~~~~~~~iL~ 53 (145)
T 3fes_A 9 TQRAKKAIDLAFESAKSLGHNIVGSEHILLGLLREEEGIAAKVLS 53 (145)
T ss_dssp CHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHCSSHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHhCCCChHHHHHH
Confidence 334444789999999999999999999999998765 3455554
No 77
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A
Probab=70.78 E-value=0.52 Score=31.89 Aligned_cols=28 Identities=18% Similarity=0.068 Sum_probs=23.0
Q ss_pred ccccccccccccccccccccchhhhccC
Q psy5184 140 QQEYDIFTASDNKKSRITPRYLMLAIKN 167 (209)
Q Consensus 140 ~lelA~~~a~~~~k~rItPrhl~lAi~n 167 (209)
+.+-|...|.+.+++.|+|+||++|++.
T Consensus 39 l~~~A~~~a~~~kRkTI~~~Di~~A~~~ 66 (68)
T 1b67_A 39 IASEAVKLAKHAGRKTIKAEDIELARKM 66 (68)
T ss_dssp HHHHHHHHHHHTTCSEECHHHHHHHGGG
T ss_pred HHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence 3345677888999999999999999863
No 78
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=54.10 E-value=1.1 Score=31.16 Aligned_cols=23 Identities=30% Similarity=0.254 Sum_probs=20.4
Q ss_pred ccccccccccccccccchhhhcc
Q psy5184 144 DIFTASDNKKSRITPRYLMLAIK 166 (209)
Q Consensus 144 A~~~a~~~~k~rItPrhl~lAi~ 166 (209)
|...|+..+++.|+++||+.|++
T Consensus 46 A~~~a~~~~rKTI~~~dI~~A~~ 68 (76)
T 3b0c_W 46 ARTNAFENKSKIIKPEHTIAAAK 68 (76)
T ss_dssp HHHHHHHHTCSSBCHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCHHHHHHHHH
Confidence 66778889999999999999985
No 79
>1wwi_A Hypothetical protein TTHA1479; structural genomics, unknown function, riken structural genomics/proteomics initiative, RSGI; 1.58A {Thermus thermophilus HB8} SCOP: a.22.1.4 PDB: 1wws_A
Probab=50.05 E-value=22 Score=28.08 Aligned_cols=65 Identities=15% Similarity=0.138 Sum_probs=52.4
Q ss_pred ccChhhHHHHHhhCCccccccCCchhHHHHHHHHHHHHHHHHHhhhhcccCCcccchhhhHHHhhc
Q psy5184 38 VFPVSRIQRYLKRGNYSERIGIGASVFLAATLEYLVAEILELAGNAASDNKKSRITPRYLMLAIKN 103 (209)
Q Consensus 38 ~FPV~ri~r~Lk~~~~~~ris~~A~VyLaAvLEYL~aEILelAgn~A~~~kk~rItP~hLq~AV~n 103 (209)
.+++.++++++++. ..--|..+-.-=+..++|-=..++|+.|-..|+.|++--|.|+||.+.-.-
T Consensus 2 vm~~~~~e~lFR~a-a~LdvdK~d~~r~~d~V~~Kl~DLl~va~~~Ak~n~RdvI~~~DLPITkGl 66 (148)
T 1wwi_A 2 LMKVAEFERLFRQA-AGLDVDKNDLKRVSDFLRNKLYDLLAVAERNAKYNGRDLIFEPDLPIAKGL 66 (148)
T ss_dssp CSCHHHHHHHHHHH-HCCCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECGGGSCCCHHH
T ss_pred cCCHHHHHHHHHHH-hccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeccccCCccHHH
Confidence 47889999999984 233566666666788888888999999999999999999999998755443
No 80
>3v9r_A MHF1, uncharacterized protein YOL086W-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=44.84 E-value=6.1 Score=28.63 Aligned_cols=34 Identities=15% Similarity=0.144 Sum_probs=29.1
Q ss_pred ccccccccccccccccchhhhccChHHHhhhhcc
Q psy5184 144 DIFTASDNKKSRITPRYLMLAIKNDEELAKLLCG 177 (209)
Q Consensus 144 A~~~a~~~~k~rItPrhl~lAi~ndeeL~~L~~~ 177 (209)
+..-|+.-||+.|++.-+.|+++.++.|.+++.+
T Consensus 56 l~~fA~HAgRkTI~~eDV~L~~Rrn~~L~~~l~~ 89 (90)
T 3v9r_A 56 LQAFARHAGRGVVNKSDLMLYLRKQPDLQERVTQ 89 (90)
T ss_dssp HHHHHHHTTCSEECHHHHHHHTTTCHHHHHHHCC
T ss_pred HHHHHHHcCCCccCHHHHHHHHHhChHHHHHhhc
Confidence 3445677899999999999999999999998864
No 81
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=43.50 E-value=3.6 Score=39.23 Aligned_cols=39 Identities=15% Similarity=0.211 Sum_probs=34.0
Q ss_pred cccccccccccccccccccccchhhhccChHHHhhhhcc
Q psy5184 139 IQQEYDIFTASDNKKSRITPRYLMLAIKNDEELAKLLCG 177 (209)
Q Consensus 139 ~~lelA~~~a~~~~k~rItPrhl~lAi~ndeeL~~L~~~ 177 (209)
.+++.|...|...+-..|+|+||.+|+-+|++...+|..
T Consensus 8 ~~l~~A~~~A~~~~h~~i~~eHLLlaLl~~~~~~~iL~~ 46 (758)
T 1r6b_X 8 LSLNMAFARAREHRHEFMTVEHLLLALLSNPSAREALEA 46 (758)
T ss_dssp HHHHHHHHHHHHTTBSEECHHHHHHHHTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCccHHHHHHHHHcCcHHHHHHHH
Confidence 367889999999999999999999999988887777753
No 82
>4dra_A Centromere protein S; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_A
Probab=41.50 E-value=26 Score=26.36 Aligned_cols=80 Identities=14% Similarity=0.099 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhcccCCcccchhhhHHHhhccHHHHhhhcCceecCCCCCCccccccccccccccccccccc
Q psy5184 65 LAATLEYLVAEILELAGNAASDNKKSRITPRYLMLAIKNDEELAKLLCGVTIAQGGVLPHIEPVLLTKKTNEYYIQQEYD 144 (209)
Q Consensus 65 LaAvLEYL~aEILelAgn~A~~~kk~rItP~hLq~AV~nD~EL~~ll~~~~ia~ggv~P~i~~~lL~~~~~~~~~~lelA 144 (209)
|=|.|-|-+..|++-+|... ...++|.-+.-=..- ++..+.+ +..=+
T Consensus 25 LKaal~y~V~rIvke~gaer----~~~vS~~ai~aL~El---~~~~~~~--------------------------ia~Dl 71 (113)
T 4dra_A 25 LKAAVHYTVGCLCEEVALDK----EMQFSKQTIAAISEL---TFRQCEN--------------------------FAKDL 71 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----TCCBCHHHHHHHHHH---HHHHHHH--------------------------HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHc----CCCcCHHHHHHHHHH---HHHHHHH--------------------------HHHHH
Confidence 66778888888888887543 233666655422221 2222211 11123
Q ss_pred cccccccccccccccchhhhccChHHHhhhhcc
Q psy5184 145 IFTASDNKKSRITPRYLMLAIKNDEELAKLLCG 177 (209)
Q Consensus 145 ~~~a~~~~k~rItPrhl~lAi~ndeeL~~L~~~ 177 (209)
..-|+.-||+.|++.-|.|+++.++.|.+++..
T Consensus 72 ~~fAkHAgRkTI~~eDV~La~Rr~~~L~~~l~~ 104 (113)
T 4dra_A 72 EMFARHAKRTTINTEDVKLLARRSNSLLKYITD 104 (113)
T ss_dssp HHHHHHTTCSEECHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHhcCCCccCHHHHHHHHHhCHHHHHHHHH
Confidence 445667799999999999999999999888753
No 83
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=40.18 E-value=2 Score=29.79 Aligned_cols=39 Identities=10% Similarity=0.048 Sum_probs=31.7
Q ss_pred cccccccccccccccccccccccccccccccccccchhhhcc
Q psy5184 125 IEPVLLTKKTNEYYIQQEYDIFTASDNKKSRITPRYLMLAIK 166 (209)
Q Consensus 125 i~~~lL~~~~~~~~~~lelA~~~a~~~~k~rItPrhl~lAi~ 166 (209)
.++..++|...+ |.+-|.+-++..+++++|+.+|.+|++
T Consensus 31 ~LA~dvEyr~~e---I~qeA~kfmrHakRk~Lt~~DI~~Alk 69 (70)
T 1taf_B 31 ELAEDVSIKLKR---IVQDAAKFMNHAKRQKLSVRDIDMSLK 69 (70)
T ss_dssp HHHHHHHHHHHH---HHHHHHHHHHHTTCSSBCHHHHHHHHC
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHcCCCeecHHHHHHHHc
Confidence 355566776666 777789999999999999999999875
No 84
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=34.57 E-value=50 Score=27.90 Aligned_cols=65 Identities=20% Similarity=0.120 Sum_probs=47.0
Q ss_pred cccChhhHHHHHhh----CCc---cccccCCchhHHHHHHHHHHHHHHHHHhhhhcccCCcccchhhhHHHh
Q psy5184 37 IVFPVSRIQRYLKR----GNY---SERIGIGASVFLAATLEYLVAEILELAGNAASDNKKSRITPRYLMLAI 101 (209)
Q Consensus 37 L~FPV~ri~r~Lk~----~~~---~~ris~~A~VyLaAvLEYL~aEILelAgn~A~~~kk~rItP~hLq~AV 101 (209)
|.+|---|.|++++ ... ..|..++|...|--+-|...-.++|-+.-.|...++..|.|.++|+|.
T Consensus 10 ~lI~KlPFqRLVREIaq~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEd~nLcaiHAkRVTim~kDiqLar 81 (235)
T 2l5a_A 10 LLISKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMKKDMQLAR 81 (235)
T ss_dssp -CCSCCHHHHHHHHHHHTSCGGGTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSGGGTTHHHHHH
T ss_pred ccccCccHHHHHHHHHHHhccCCccceecHHHHHHHHHHHHHHHHHHHhhhHHHHhcccccccchhhHHHHH
Confidence 44555556666654 111 247777888778777787777889998777888888999999999984
No 85
>3b0b_B CENP-S, centromere protein S; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus}
Probab=32.78 E-value=29 Score=25.78 Aligned_cols=79 Identities=15% Similarity=0.086 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhcccCCcccchhhhHHHhhccHHHHhhhcCceecCCCCCCccccccccccccccccccccc
Q psy5184 65 LAATLEYLVAEILELAGNAASDNKKSRITPRYLMLAIKNDEELAKLLCGVTIAQGGVLPHIEPVLLTKKTNEYYIQQEYD 144 (209)
Q Consensus 65 LaAvLEYL~aEILelAgn~A~~~kk~rItP~hLq~AV~nD~EL~~ll~~~~ia~ggv~P~i~~~lL~~~~~~~~~~lelA 144 (209)
|-+.|-|-+..|++-++.. ...+++|.-+.-=..- +++++.+ +..=+
T Consensus 17 LKaal~~~V~rI~~~~g~~----~~~~vs~~~i~aL~E~---~~~~~~~--------------------------ia~Da 63 (107)
T 3b0b_B 17 LRAAVHYTTGCLCQDVAED----KGVLFSKQTVAAISEI---TFRQCEN--------------------------FARDL 63 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHH----HTCEECHHHHHHHHHH---HHHHHHH--------------------------HHHHH
T ss_pred HHHHHHHHHHHHHHHHhhh----cCCccCHHHHHHHHHH---HHHHHHH--------------------------HHHHH
Confidence 5567778888888877642 2346777755421111 2222211 22224
Q ss_pred cccccccccccccccchhhhccChHHHhhhhc
Q psy5184 145 IFTASDNKKSRITPRYLMLAIKNDEELAKLLC 176 (209)
Q Consensus 145 ~~~a~~~~k~rItPrhl~lAi~ndeeL~~L~~ 176 (209)
..-|+.-+++.|++.-+.||++.++.|-..+.
T Consensus 64 ~~fA~HAgRkTI~~eDV~La~Rrn~~l~~~l~ 95 (107)
T 3b0b_B 64 EMFARHAKRSTITSEDVKLLARRSNSLLKYIT 95 (107)
T ss_dssp HHHHHHTTCSEECHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHhcCcCcCCHHHHHHHHHhCHHHHHHHH
Confidence 45566779999999999999999998876664
No 86
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ...
Probab=25.83 E-value=7.5 Score=29.98 Aligned_cols=24 Identities=33% Similarity=0.271 Sum_probs=21.6
Q ss_pred cccccccccccccccccchhhhcc
Q psy5184 143 YDIFTASDNKKSRITPRYLMLAIK 166 (209)
Q Consensus 143 lA~~~a~~~~k~rItPrhl~lAi~ 166 (209)
-|..-|+.+++..||+|.||.|++
T Consensus 77 EAs~La~~nkr~TitsreIqtAvr 100 (126)
T 1tzy_B 77 EASRLAHYNKRSTITSREIQTAVR 100 (126)
T ss_dssp HHHHHHHHTTCSEECHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHH
Confidence 377888899999999999999986
No 87
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Probab=25.51 E-value=7.6 Score=29.82 Aligned_cols=24 Identities=33% Similarity=0.271 Sum_probs=21.6
Q ss_pred cccccccccccccccccchhhhcc
Q psy5184 143 YDIFTASDNKKSRITPRYLMLAIK 166 (209)
Q Consensus 143 lA~~~a~~~~k~rItPrhl~lAi~ 166 (209)
-|..-|+.+++..||+|.||.|++
T Consensus 74 EAs~La~~nkr~TitsreIqtAvr 97 (123)
T 2nqb_D 74 EASRLAHYNKRSTITSREIQTAVR 97 (123)
T ss_dssp HHHHHHHHTTCCEECHHHHHHHHH
T ss_pred HHHHHHHhcCCCcCCHHHHHHHHH
Confidence 377888899999999999999986
No 88
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=24.94 E-value=5.7 Score=38.00 Aligned_cols=43 Identities=16% Similarity=0.025 Sum_probs=32.9
Q ss_pred ccccccccccccccccccccccccccchhhhccCh--HHHhhhhc
Q psy5184 134 TNEYYIQQEYDIFTASDNKKSRITPRYLMLAIKND--EELAKLLC 176 (209)
Q Consensus 134 ~~~~~~~lelA~~~a~~~~k~rItPrhl~lAi~nd--eeL~~L~~ 176 (209)
+.....+++.|.+.|...+-..|+|+||.+|+-.+ .....+|.
T Consensus 7 t~~a~~~l~~A~~~A~~~~h~~i~~eHlLlaLl~~~~~~~~~iL~ 51 (758)
T 3pxi_A 7 TERAQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKALQ 51 (758)
T ss_dssp CHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHSCCSHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHhccCcHHHHHHH
Confidence 33444478899999999999999999999999754 33445554
No 89
>1r4v_A Hypothetical protein AQ_328; structural genomics, all-alpha, histon fold, PSI, protein ST initiative, midwest center for structural genomics; HET: MSE; 1.90A {Aquifex aeolicus} SCOP: a.22.1.4
Probab=24.56 E-value=31 Score=27.82 Aligned_cols=65 Identities=11% Similarity=0.049 Sum_probs=51.0
Q ss_pred ccChhhHHHHHhhCCccccccCCchhHHHHHHHHHHHHHHHHHhhhhcccCCcccchhhhHHHhhc
Q psy5184 38 VFPVSRIQRYLKRGNYSERIGIGASVFLAATLEYLVAEILELAGNAASDNKKSRITPRYLMLAIKN 103 (209)
Q Consensus 38 ~FPV~ri~r~Lk~~~~~~ris~~A~VyLaAvLEYL~aEILelAgn~A~~~kk~rItP~hLq~AV~n 103 (209)
.+++.++++++++. ..--|..+-.-=+..++|--..++|+.|-..|+.|++--|.|+||.+.-.-
T Consensus 26 vmg~~kferlFR~a-agLDvdK~d~kr~~d~V~~Kl~DLl~va~~~Ak~NgRDvI~~~DLPITKGl 90 (171)
T 1r4v_A 26 PKGFDKLDHYFRTE-LDIDLTDETIELLLNSVKAAFGKLFYGAEQRARWNGRDFIALADLNITKAL 90 (171)
T ss_dssp CTTHHHHHHHHHHH-HCCCCCHHHHHHHHHHHHHHHHHTTTTHHHHHHHTTCSEECGGGSCCCHHH
T ss_pred cCChHHHHHHHHHH-hccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeccccCCccHHH
Confidence 78999999999984 223455555555777788888889999999999999999999998755443
No 90
>3pm8_A PFCDPK2, calcium-dependent protein kinase 2; malaria, structural genomics, structural genomics CONS SGC; 2.00A {Plasmodium falciparum K1}
Probab=24.43 E-value=26 Score=26.99 Aligned_cols=101 Identities=12% Similarity=0.113 Sum_probs=56.8
Q ss_pred ccCCcccchhhhHHHhh------ccHHHHhhhcCceecCCCCCCc--ccccccccccccccccccccccccccccccccc
Q psy5184 86 DNKKSRITPRYLMLAIK------NDEELAKLLCGVTIAQGGVLPH--IEPVLLTKKTNEYYIQQEYDIFTASDNKKSRIT 157 (209)
Q Consensus 86 ~~kk~rItP~hLq~AV~------nD~EL~~ll~~~~ia~ggv~P~--i~~~lL~~~~~~~~~~lelA~~~a~~~~k~rIt 157 (209)
.++.-.|+...+..++. .++++..+|........|.+.. |...+...........+..++...-.++.-.|+
T Consensus 68 ~d~~G~Is~~El~~~l~~~g~~~~~~~~~~l~~~~D~d~~g~I~~~EF~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~Is 147 (197)
T 3pm8_A 68 VDNSGTLSSQEILDGLKKIGYQKIPPDIHQVLRDIDSNASGQIHYTDFLAATIDKQTYLKKEVCLIPFKFFDIDGNGKIS 147 (197)
T ss_dssp TTCSSEECHHHHHHHHHHHC----CHHHHHHHHC-------CEEHHHHHHTTCCHHHHCSHHHHHHHHHHHCTTCSSEEC
T ss_pred CCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCCCCCCC
Confidence 45667899999988776 4677788886543333333322 223222211111111344566666667788899
Q ss_pred ccchhhhccC--------hHHHhhhhccccccCcccc
Q psy5184 158 PRYLMLAIKN--------DEELAKLLCGVTIAQGGVL 186 (209)
Q Consensus 158 Prhl~lAi~n--------deeL~~L~~~~tia~ggv~ 186 (209)
...+.-++.. +++++.+|..+.....|.+
T Consensus 148 ~~El~~~l~~~~~~~~~~~~~~~~l~~~~D~d~dG~I 184 (197)
T 3pm8_A 148 VEELKRIFGRDDIENPLIDKAIDSLLQEVDLNGDGEI 184 (197)
T ss_dssp HHHHHHHHC----CCHHHHHHHHHHHHHHCTTCSSSE
T ss_pred HHHHHHHHHhcccCCCCCHHHHHHHHHHHcCCCCCcC
Confidence 9988888764 4678888876555444443
No 91
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=23.95 E-value=11 Score=36.77 Aligned_cols=43 Identities=21% Similarity=0.054 Sum_probs=33.0
Q ss_pred ccccccccccccccccccccccccccchhhhccChHH--Hhhhhc
Q psy5184 134 TNEYYIQQEYDIFTASDNKKSRITPRYLMLAIKNDEE--LAKLLC 176 (209)
Q Consensus 134 ~~~~~~~lelA~~~a~~~~k~rItPrhl~lAi~ndee--L~~L~~ 176 (209)
+.....+++.|...|...+-..|+|+||.+|+-.+++ +..+|.
T Consensus 7 t~~a~~al~~A~~~A~~~~h~~i~~eHLLlaLl~~~~~~~~~iL~ 51 (854)
T 1qvr_A 7 TQAAREALAQAQVLAQRMKHQAIDLPHLWAVLLKDERSLAWRLLE 51 (854)
T ss_dssp CHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHCCSSSSHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHhCCCcHHHHHHH
Confidence 3333447889999999999999999999999976643 345554
No 92
>3vh5_A CENP-S; histone fold, chromosome segregation, DNA binding, nucleus, binding protein; 2.40A {Gallus gallus} PDB: 3vh6_A
Probab=20.41 E-value=25 Score=27.51 Aligned_cols=33 Identities=24% Similarity=0.261 Sum_probs=28.2
Q ss_pred cccccccccccccccchhhhccChHHHhhhhcc
Q psy5184 145 IFTASDNKKSRITPRYLMLAIKNDEELAKLLCG 177 (209)
Q Consensus 145 ~~~a~~~~k~rItPrhl~lAi~ndeeL~~L~~~ 177 (209)
..-|++-+|+.|++.-|.|+++.++.|.++|..
T Consensus 64 e~FAkHAGRKTI~~eDVkLa~Rrn~~L~~~L~~ 96 (140)
T 3vh5_A 64 EMFARHAKRSTITSEDVKLLARRSNSLLKYITQ 96 (140)
T ss_dssp HHHHHHTTCSEECHHHHHHHHTTSHHHHHHHHH
T ss_pred HHHHHHcCCCccCHHHHHHHHHhCHHHHHHHHH
Confidence 445667799999999999999999999888764
Done!