RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy5184
(209 letters)
>gnl|CDD|238029 cd00074, H2A, Histone 2A; H2A is a subunit of the nucleosome. The
nucleosome is an octamer containing two H2A, H2B, H3,
and H4 subunits. The H2A subunit performs essential
roles in maintaining structural integrity of the
nucleosome, chromatin condensation, and binding of
specific chromatin-associated proteins.
Length = 115
Score = 175 bits (447), Expect = 4e-57
Identities = 76/111 (68%), Positives = 90/111 (81%)
Query: 23 KSNAARRTRSAKANIVFPVSRIQRYLKRGNYSERIGIGASVFLAATLEYLVAEILELAGN 82
K + +R+RSA+A + FPV RI RYLK+G Y+ER+G GA V+LAA LEYL AE+LELAGN
Sbjct: 5 KKKSKKRSRSARAGLQFPVGRIHRYLKKGRYAERVGAGAPVYLAAVLEYLTAEVLELAGN 64
Query: 83 AASDNKKSRITPRYLMLAIKNDEELAKLLCGVTIAQGGVLPHIEPVLLTKK 133
AA DNKK RITPR+L LA++NDEEL KLL GVTIA GGVLP+I VLL KK
Sbjct: 65 AARDNKKKRITPRHLQLAVRNDEELNKLLKGVTIASGGVLPNIHKVLLPKK 115
Score = 85.1 bits (211), Expect = 2e-21
Identities = 37/50 (74%), Positives = 41/50 (82%)
Query: 148 ASDNKKSRITPRYLMLAIKNDEELAKLLCGVTIAQGGVLPHIEPVLLTKK 197
A DNKK RITPR+L LA++NDEEL KLL GVTIA GGVLP+I VLL KK
Sbjct: 66 ARDNKKKRITPRHLQLAVRNDEELNKLLKGVTIASGGVLPNIHKVLLPKK 115
>gnl|CDD|185399 PTZ00017, PTZ00017, histone H2A; Provisional.
Length = 134
Score = 174 bits (444), Expect = 2e-56
Identities = 76/125 (60%), Positives = 90/125 (72%), Gaps = 2/125 (1%)
Query: 10 KTASGGKDLGSKLKSNAARRTRSAKANIVFPVSRIQRYLKRGNYSERIGIGASVFLAATL 69
K G G +RSAKA + FPV R+ RYLK+G Y++R+G GA V+LAA L
Sbjct: 1 KGGKGKT--GGGKAGKKKPVSRSAKAGLQFPVGRVHRYLKKGRYAKRVGAGAPVYLAAVL 58
Query: 70 EYLVAEILELAGNAASDNKKSRITPRYLMLAIKNDEELAKLLCGVTIAQGGVLPHIEPVL 129
EYL AE+LELAGNAA DNKK RITPR++ LAI+NDEEL KLL GVTIA GGVLP+I VL
Sbjct: 59 EYLTAEVLELAGNAAKDNKKKRITPRHIQLAIRNDEELNKLLAGVTIASGGVLPNIHKVL 118
Query: 130 LTKKT 134
L KK+
Sbjct: 119 LPKKS 123
Score = 87.9 bits (218), Expect = 2e-22
Identities = 38/62 (61%), Positives = 44/62 (70%)
Query: 148 ASDNKKSRITPRYLMLAIKNDEELAKLLCGVTIAQGGVLPHIEPVLLTKKTNGKNTSGSQ 207
A DNKK RITPR++ LAI+NDEEL KLL GVTIA GGVLP+I VLL KK+ K
Sbjct: 73 AKDNKKKRITPRHIQLAIRNDEELNKLLAGVTIASGGVLPNIHKVLLPKKSKPKQGKKQN 132
Query: 208 EY 209
+
Sbjct: 133 KQ 134
>gnl|CDD|197711 smart00414, H2A, Histone 2A.
Length = 106
Score = 169 bits (431), Expect = 7e-55
Identities = 74/105 (70%), Positives = 87/105 (82%)
Query: 30 TRSAKANIVFPVSRIQRYLKRGNYSERIGIGASVFLAATLEYLVAEILELAGNAASDNKK 89
+RSA+A + FPV RI R L++G Y++R+G GA V+LAA LEYL AE+LELAGNAA DNKK
Sbjct: 1 SRSARAGLQFPVGRIHRLLRKGTYAKRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKK 60
Query: 90 SRITPRYLMLAIKNDEELAKLLCGVTIAQGGVLPHIEPVLLTKKT 134
RITPR+L LAI+NDEEL KLL GVTIAQGGVLP+I VLL KKT
Sbjct: 61 RRITPRHLQLAIRNDEELNKLLKGVTIAQGGVLPNIHKVLLPKKT 105
Score = 83.9 bits (208), Expect = 4e-21
Identities = 40/51 (78%), Positives = 43/51 (84%)
Query: 148 ASDNKKSRITPRYLMLAIKNDEELAKLLCGVTIAQGGVLPHIEPVLLTKKT 198
A DNKK RITPR+L LAI+NDEEL KLL GVTIAQGGVLP+I VLL KKT
Sbjct: 55 ARDNKKRRITPRHLQLAIRNDEELNKLLKGVTIAQGGVLPNIHKVLLPKKT 105
>gnl|CDD|177758 PLN00157, PLN00157, histone H2A; Provisional.
Length = 132
Score = 160 bits (407), Expect = 6e-51
Identities = 77/120 (64%), Positives = 90/120 (75%), Gaps = 2/120 (1%)
Query: 15 GKDLGSKLKSNAARRTRSAKANIVFPVSRIQRYLKRGNYSERIGIGASVFLAATLEYLVA 74
GK G A +RSAKA + FPV RI RYLK G Y+ R+G GA V+LAA LEYL A
Sbjct: 5 GKRKGGGGGKKAT--SRSAKAGLQFPVGRIARYLKAGKYATRVGAGAPVYLAAVLEYLAA 62
Query: 75 EILELAGNAASDNKKSRITPRYLMLAIKNDEELAKLLCGVTIAQGGVLPHIEPVLLTKKT 134
E+LELAGNAA DNKKSRI PR++ LA++NDEEL+KLL GVTIA GGVLP+I VLL KK+
Sbjct: 63 EVLELAGNAARDNKKSRIVPRHIQLAVRNDEELSKLLGGVTIAAGGVLPNIHSVLLPKKS 122
Score = 82.6 bits (204), Expect = 2e-20
Identities = 38/62 (61%), Positives = 48/62 (77%), Gaps = 1/62 (1%)
Query: 148 ASDNKKSRITPRYLMLAIKNDEELAKLLCGVTIAQGGVLPHIEPVLLTKKTNGKNTSGSQ 207
A DNKKSRI PR++ LA++NDEEL+KLL GVTIA GGVLP+I VLL KK+ GK+ +
Sbjct: 72 ARDNKKSRIVPRHIQLAVRNDEELSKLLGGVTIAAGGVLPNIHSVLLPKKS-GKSKGEPK 130
Query: 208 EY 209
+
Sbjct: 131 DP 132
>gnl|CDD|215080 PLN00156, PLN00156, histone H2AX; Provisional.
Length = 139
Score = 145 bits (367), Expect = 1e-44
Identities = 73/126 (57%), Positives = 92/126 (73%), Gaps = 1/126 (0%)
Query: 12 ASGGKDLGSKLKSNAARR-TRSAKANIVFPVSRIQRYLKRGNYSERIGIGASVFLAATLE 70
A G G + K A + +RS+KA + FPV RI R+LK G Y+ER+G GA V+L+A LE
Sbjct: 2 AGSGTTKGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLE 61
Query: 71 YLVAEILELAGNAASDNKKSRITPRYLMLAIKNDEELAKLLCGVTIAQGGVLPHIEPVLL 130
YL AE+LELAGNAA DNKK+RI PR++ LA++NDEEL+KLL VTIA GGVLP+I LL
Sbjct: 62 YLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIAAGGVLPNIHQTLL 121
Query: 131 TKKTNE 136
KK +
Sbjct: 122 PKKVGK 127
Score = 72.3 bits (177), Expect = 2e-16
Identities = 37/65 (56%), Positives = 45/65 (69%), Gaps = 3/65 (4%)
Query: 148 ASDNKKSRITPRYLMLAIKNDEELAKLLCGVTIAQGGVLPHIEPVLLTKKTNGKNT---S 204
A DNKK+RI PR++ LA++NDEEL+KLL VTIA GGVLP+I LL KK S
Sbjct: 75 ARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIAAGGVLPNIHQTLLPKKVGKGKGDIGS 134
Query: 205 GSQEY 209
SQE+
Sbjct: 135 ASQEF 139
>gnl|CDD|227587 COG5262, HTA1, Histone H2A [Chromatin structure and dynamics].
Length = 132
Score = 143 bits (362), Expect = 4e-44
Identities = 80/125 (64%), Positives = 93/125 (74%), Gaps = 2/125 (1%)
Query: 13 SGGKDLGSKLKSNAARRTRSAKANIVFPVSRIQRYLKRGNYSERIGIGASVFLAATLEYL 72
SGGK G K ++RSAKA ++FPV R++R LK+GNY RIG GA V+LAA LEYL
Sbjct: 3 SGGK--GGKAADARVSQSRSAKAGLIFPVGRVKRLLKKGNYRMRIGAGAPVYLAAVLEYL 60
Query: 73 VAEILELAGNAASDNKKSRITPRYLMLAIKNDEELAKLLCGVTIAQGGVLPHIEPVLLTK 132
AEILELAGNAA DNKK RI PR+L LAI+NDEEL KLL VTIAQGGVLP+I P LL K
Sbjct: 61 AAEILELAGNAARDNKKKRIIPRHLQLAIRNDEELNKLLGDVTIAQGGVLPNINPGLLPK 120
Query: 133 KTNEY 137
+ +
Sbjct: 121 SSKKG 125
Score = 71.0 bits (174), Expect = 5e-16
Identities = 40/61 (65%), Positives = 45/61 (73%), Gaps = 1/61 (1%)
Query: 148 ASDNKKSRITPRYLMLAIKNDEELAKLLCGVTIAQGGVLPHIEPVLLTKKTNGKNTSGSQ 207
A DNKK RI PR+L LAI+NDEEL KLL VTIAQGGVLP+I P LL K + K + SQ
Sbjct: 72 ARDNKKKRIIPRHLQLAIRNDEELNKLLGDVTIAQGGVLPNINPGLLPKSS-KKGSKRSQ 130
Query: 208 E 208
E
Sbjct: 131 E 131
>gnl|CDD|165721 PLN00153, PLN00153, histone H2A; Provisional.
Length = 129
Score = 137 bits (346), Expect = 9e-42
Identities = 75/105 (71%), Positives = 86/105 (81%)
Query: 30 TRSAKANIVFPVSRIQRYLKRGNYSERIGIGASVFLAATLEYLVAEILELAGNAASDNKK 89
+RSAKA + FPV RI RYLK+G Y+ERIG GA V+LAA LEYL AE+LELAGNAA DNKK
Sbjct: 16 SRSAKAGLQFPVGRIARYLKKGKYAERIGAGAPVYLAAVLEYLTAEVLELAGNAARDNKK 75
Query: 90 SRITPRYLMLAIKNDEELAKLLCGVTIAQGGVLPHIEPVLLTKKT 134
+RI PR++ LAI+NDEEL KLL VTIA GGVLP+I VLL KKT
Sbjct: 76 NRIVPRHIQLAIRNDEELGKLLGEVTIASGGVLPNIHAVLLPKKT 120
Score = 68.6 bits (167), Expect = 4e-15
Identities = 38/61 (62%), Positives = 44/61 (72%), Gaps = 2/61 (3%)
Query: 148 ASDNKKSRITPRYLMLAIKNDEELAKLLCGVTIAQGGVLPHIEPVLLTKKTNGKNTSGSQ 207
A DNKK+RI PR++ LAI+NDEEL KLL VTIA GGVLP+I VLL KKT G G +
Sbjct: 70 ARDNKKNRIVPRHIQLAIRNDEELGKLLGEVTIASGGVLPNIHAVLLPKKTKGGK--GEE 127
Query: 208 E 208
Sbjct: 128 T 128
>gnl|CDD|177756 PLN00154, PLN00154, histone H2A; Provisional.
Length = 136
Score = 114 bits (286), Expect = 1e-32
Identities = 65/127 (51%), Positives = 82/127 (64%), Gaps = 6/127 (4%)
Query: 11 TASGGKDLGSKLKSNAARRTRSAKANIVFPVSRIQRYLK-RGNYSERIGIGASVFLAATL 69
TA+ K K K +RS++A + FPV RI R LK R + R+G A+V+ AA L
Sbjct: 15 TAAAAKKDKDKKKPT----SRSSRAGLQFPVGRIHRQLKQRVSAHGRVGATAAVYTAAIL 70
Query: 70 EYLVAEILELAGNAASDNKKSRITPRYLMLAIKNDEELAKLLCGVTIAQGGVLPHIEPVL 129
EYL AE+LELAGNA+ D K RITPR+L LAI+ DEEL L+ G TIA GGV+PHI L
Sbjct: 71 EYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSL 129
Query: 130 LTKKTNE 136
+ K T +
Sbjct: 130 INKSTKK 136
Score = 53.4 bits (128), Expect = 2e-09
Identities = 29/49 (59%), Positives = 34/49 (69%), Gaps = 1/49 (2%)
Query: 150 DNKKSRITPRYLMLAIKNDEELAKLLCGVTIAQGGVLPHIEPVLLTKKT 198
D K RITPR+L LAI+ DEEL L+ G TIA GGV+PHI L+ K T
Sbjct: 87 DLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKST 134
>gnl|CDD|240330 PTZ00252, PTZ00252, histone H2A; Provisional.
Length = 134
Score = 101 bits (254), Expect = 6e-28
Identities = 51/116 (43%), Positives = 78/116 (67%), Gaps = 2/116 (1%)
Query: 20 SKLKSNAARRTRSAKANIVFPVSRIQRYLKRGNYSERIGIGASVFLAATLEYLVAEILEL 79
+K K++ + RSAKA ++FPV R+ L+RG Y+ RIG +V++AA LEYL AE+LEL
Sbjct: 7 AKKKASKSGSGRSAKAGLIFPVGRVGSLLRRGQYARRIGASGAVYMAAVLEYLTAELLEL 66
Query: 80 AGNAASDN--KKSRITPRYLMLAIKNDEELAKLLCGVTIAQGGVLPHIEPVLLTKK 133
+ AA+ K R+TPR + LA+++D++L LL VT+++GGV+P + L K
Sbjct: 67 SVKAAAQQAKKPKRLTPRTVTLAVRHDDDLGSLLKNVTLSRGGVMPSLNKALAKKH 122
Score = 48.4 bits (115), Expect = 2e-07
Identities = 21/55 (38%), Positives = 34/55 (61%)
Query: 147 TASDNKKSRITPRYLMLAIKNDEELAKLLCGVTIAQGGVLPHIEPVLLTKKTNGK 201
K R+TPR + LA+++D++L LL VT+++GGV+P + L K +GK
Sbjct: 72 AQQAKKPKRLTPRTVTLAVRHDDDLGSLLKNVTLSRGGVMPSLNKALAKKHKSGK 126
>gnl|CDD|201020 pfam00125, Histone, Core histone H2A/H2B/H3/H4.
Length = 75
Score = 74.1 bits (183), Expect = 8e-18
Identities = 33/75 (44%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 31 RSAKANIVFPVSRIQRYLKRGNYSE-RIGIGASVFLAATLEYLVAEILELAGNAASDNKK 89
S + P SR+ R LK G Y+E RI A V L LE L+ EILE AG A K+
Sbjct: 1 SSRLLILKLPFSRVVRELKEGFYAELRISSKAPVALQEALEDLLEEILEDAGLLARHAKR 60
Query: 90 SRITPRYLMLAIKND 104
ITPR + LA++ D
Sbjct: 61 KTITPRDIQLAVRLD 75
>gnl|CDD|165723 PLN00155, PLN00155, histone H2A; Provisional.
Length = 58
Score = 59.0 bits (142), Expect = 4e-12
Identities = 30/43 (69%), Positives = 35/43 (81%)
Query: 30 TRSAKANIVFPVSRIQRYLKRGNYSERIGIGASVFLAATLEYL 72
+RSAKA + FPV RI RYLK+G Y+ERIG GA V+LAA LEYL
Sbjct: 16 SRSAKAGLQFPVGRIARYLKKGKYAERIGAGAPVYLAAVLEYL 58
>gnl|CDD|227572 COG5247, BUR6, Class 2 transcription repressor NC2, alpha subunit
(DRAP1 homolog) [Transcription].
Length = 113
Score = 41.1 bits (96), Expect = 4e-05
Identities = 23/110 (20%), Positives = 49/110 (44%), Gaps = 5/110 (4%)
Query: 17 DLGSKLKSNAARRTRSAKANIVFPVSRIQRYLKRGNYSERIGIGASVFLAATLEYLVAEI 76
++G+ K N+ ++ ++ FP++R+++ ++ ++G V + LE + EI
Sbjct: 7 NMGTMPKQNSQKKKKTR-----FPIARLKKIMQLDEDIGKVGQSTPVIASKALEMFLTEI 61
Query: 77 LELAGNAASDNKKSRITPRYLMLAIKNDEELAKLLCGVTIAQGGVLPHIE 126
+ L+ A R+T +L A ++DE+ L P E
Sbjct: 62 VGLSLKEARKKSSKRMTSEFLKRATESDEKFDFLKNMEQFKNRETQPEEE 111
>gnl|CDD|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106). This
family of proteins are found in large numbers in the
Trichomonas vaginalis proteome. The function of this
protein is unknown.
Length = 422
Score = 28.5 bits (63), Expect = 2.9
Identities = 12/39 (30%), Positives = 20/39 (51%)
Query: 133 KTNEYYIQQEYDIFTASDNKKSRITPRYLMLAIKNDEEL 171
K +Y + + YD+ N + TPRYLM + ++ L
Sbjct: 317 KPGKYKLAKGYDLIAYHPNDMNEFTPRYLMSELNDNSTL 355
>gnl|CDD|201453 pfam00808, CBFD_NFYB_HMF, Histone-like transcription factor
(CBF/NF-Y) and archaeal histone. This family includes
archaebacterial histones and histone like transcription
factors from eukaryotes.
Length = 65
Score = 25.7 bits (57), Expect = 5.1
Identities = 15/63 (23%), Positives = 28/63 (44%)
Query: 39 FPVSRIQRYLKRGNYSERIGIGASVFLAATLEYLVAEILELAGNAASDNKKSRITPRYLM 98
P++R++R +K + RI A +A +E + I A K+ I ++
Sbjct: 3 LPIARVKRIMKSDPDAGRISQDAKELIAECVEEFIEFIASEAAEICKKEKRKTINAEHIK 62
Query: 99 LAI 101
LA+
Sbjct: 63 LAV 65
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.314 0.132 0.359
Gapped
Lambda K H
0.267 0.0718 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,455,051
Number of extensions: 990502
Number of successful extensions: 717
Number of sequences better than 10.0: 1
Number of HSP's gapped: 712
Number of HSP's successfully gapped: 33
Length of query: 209
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 116
Effective length of database: 6,812,680
Effective search space: 790270880
Effective search space used: 790270880
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 57 (25.8 bits)