RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5184
(209 letters)
>d1u35c1 a.22.1.1 (C:814-919) macro-H2A.1, histone domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 106
Score = 157 bits (398), Expect = 1e-50
Identities = 68/106 (64%), Positives = 86/106 (81%)
Query: 28 RRTRSAKANIVFPVSRIQRYLKRGNYSERIGIGASVFLAATLEYLVAEILELAGNAASDN 87
+ +RSAKA ++FPV R+ RY+K+G+ RIG+GA V++AA LEYL AEILELA NAA DN
Sbjct: 1 KTSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAVNAARDN 60
Query: 88 KKSRITPRYLMLAIKNDEELAKLLCGVTIAQGGVLPHIEPVLLTKK 133
KK R+TPR+++LA+ NDEEL +LL GVTIA GGVLP+I P LL KK
Sbjct: 61 KKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKK 106
Score = 81.4 bits (201), Expect = 6e-21
Identities = 38/73 (52%), Positives = 49/73 (67%), Gaps = 3/73 (4%)
Query: 127 PVLLTKKTNEYYIQQEYDIFT--ASDNKKSRITPRYLMLAIKNDEELAKLLCGVTIAQGG 184
PV + EY + ++ A DNKK R+TPR+++LA+ NDEEL +LL GVTIA GG
Sbjct: 35 PVYMAA-VLEYLTAEILELAVNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGG 93
Query: 185 VLPHIEPVLLTKK 197
VLP+I P LL KK
Sbjct: 94 VLPNIHPELLAKK 106
>d1tzya_ a.22.1.1 (A:) Histone H2A {Chicken (Gallus gallus),
erythrocytes [TaxId: 9031]}
Length = 106
Score = 155 bits (394), Expect = 6e-50
Identities = 71/104 (68%), Positives = 87/104 (83%)
Query: 29 RTRSAKANIVFPVSRIQRYLKRGNYSERIGIGASVFLAATLEYLVAEILELAGNAASDNK 88
++RS++A + FPV R+ R L++GNY+ER+G GA V+LAA LEYL AEILELAGNAA DNK
Sbjct: 3 KSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNK 62
Query: 89 KSRITPRYLMLAIKNDEELAKLLCGVTIAQGGVLPHIEPVLLTK 132
K+RI PR+L LAI+NDEEL KLL VTIAQGGVLP+I+ VLL K
Sbjct: 63 KTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPK 106
Score = 80.3 bits (198), Expect = 2e-20
Identities = 36/51 (70%), Positives = 41/51 (80%)
Query: 146 FTASDNKKSRITPRYLMLAIKNDEELAKLLCGVTIAQGGVLPHIEPVLLTK 196
A DNKK+RI PR+L LAI+NDEEL KLL VTIAQGGVLP+I+ VLL K
Sbjct: 56 NAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPK 106
>d1f66c_ a.22.1.1 (C:) Histone H2A {Human (Homo sapiens), variant
H2A.Z [TaxId: 9606]}
Length = 103
Score = 137 bits (347), Expect = 6e-43
Identities = 57/102 (55%), Positives = 71/102 (69%), Gaps = 2/102 (1%)
Query: 30 TRSAKANIVFPVSRIQRYLKRGNYSE-RIGIGASVFLAATLEYLVAEILELAGNAASDNK 88
+RS +A + FPV RI R+LK S R+G A+V+ AA LEYL AE+LELAGNA+ D K
Sbjct: 3 SRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLK 62
Query: 89 KSRITPRYLMLAIKNDEELAKLLCGVTIAQGGVLPHIEPVLL 130
RITPR+L LAI+ DEEL L+ TIA GGV+PHI L+
Sbjct: 63 VKRITPRHLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLI 103
Score = 71.4 bits (175), Expect = 4e-17
Identities = 26/49 (53%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Query: 146 FTASDNKKSRITPRYLMLAIKNDEELAKLLCGVTIAQGGVLPHIEPVLL 194
+ D K RITPR+L LAI+ DEEL L+ TIA GGV+PHI L+
Sbjct: 56 NASKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLI 103
>d1q9ca_ a.22.1.3 (A:) Histone domain of Son of sevenless protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 172
Score = 116 bits (291), Expect = 1e-33
Identities = 29/107 (27%), Positives = 53/107 (49%), Gaps = 1/107 (0%)
Query: 5 KEKISKTASGGKDLGSKLKSNAARRTRSAKANIVFPVSRIQRYLKRGNYSERIGIGASVF 64
+E++ K+ D + + +A R + + PV +I LK +I SV+
Sbjct: 66 EERVQKSFPHPIDKWAIADAQSAIEKRKRRNPLSLPVEKIHPLLKEV-LGYKIDHQVSVY 124
Query: 65 LAATLEYLVAEILELAGNAASDNKKSRITPRYLMLAIKNDEELAKLL 111
+ A LEY+ A+IL+LAGN + + IT + + +A+ D+ L +
Sbjct: 125 IVAVLEYISADILKLAGNYVRNIRHYEITKQDIKVAMCADKVLMDMF 171
>d1jfia_ a.22.1.3 (A:) Negative cofactor 2, NC2, alpha chain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 66
Score = 71.7 bits (176), Expect = 1e-17
Identities = 12/64 (18%), Positives = 27/64 (42%)
Query: 39 FPVSRIQRYLKRGNYSERIGIGASVFLAATLEYLVAEILELAGNAASDNKKSRITPRYLM 98
FP +RI++ ++ ++ V ++ LE + +L+ A +T +L
Sbjct: 3 FPPARIKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLK 62
Query: 99 LAIK 102
I+
Sbjct: 63 QCIE 66
Score = 25.1 bits (55), Expect = 1.8
Identities = 3/19 (15%), Positives = 6/19 (31%)
Query: 148 ASDNKKSRITPRYLMLAIK 166
+T +L I+
Sbjct: 48 TQSRNAKTMTTSHLKQCIE 66
>d1n1jb_ a.22.1.3 (B:) Nuclear transcription factor Y subunit gamma
(Nf-Yc2) {Human (Homo sapiens) [TaxId: 9606]}
Length = 78
Score = 69.1 bits (169), Expect = 2e-16
Identities = 16/71 (22%), Positives = 31/71 (43%)
Query: 40 PVSRIQRYLKRGNYSERIGIGASVFLAATLEYLVAEILELAGNAASDNKKSRITPRYLML 99
P++RI++ +K + I A V A + + E+ A DNK+ + + +
Sbjct: 2 PLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAM 61
Query: 100 AIKNDEELAKL 110
AI ++ L
Sbjct: 62 AITKFDQFDFL 72
Score = 30.6 bits (69), Expect = 0.023
Identities = 11/50 (22%), Positives = 20/50 (40%), Gaps = 3/50 (6%)
Query: 127 PVLLTKKTNEYYIQQ--EYDIFTASDNKKSRITPRYLMLAIKNDEELAKL 174
PVL K + +I + DNK+ + + +AI ++ L
Sbjct: 24 PVLFAKAA-QIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFL 72
>d1f1ea_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanopyrus
kandleri [TaxId: 2320]}
Length = 151
Score = 50.6 bits (121), Expect = 8e-09
Identities = 14/70 (20%), Positives = 25/70 (35%), Gaps = 1/70 (1%)
Query: 34 KANIVFPVSRIQRYLKRGNYSERIGIGASVFLAATLEYLVAEILELAGNAASDNKKSRIT 93
+F + ++R LKR ER A + E+ E A A ++ + +
Sbjct: 75 YDGELFGRATVRRILKRAG-IERASSDAVDLYNKLICRATEELGEKAAEYADEDGRKTVQ 133
Query: 94 PRYLMLAIKN 103
+ AI
Sbjct: 134 GEDVEKAITY 143
Score = 44.4 bits (105), Expect = 1e-06
Identities = 20/142 (14%), Positives = 46/142 (32%), Gaps = 13/142 (9%)
Query: 39 FPVSRIQRYLKRGNYSERIGIGASVFLAATLEYLVAEILELAGNAASDNKKSRITPRYLM 98
P + I+R ++G R+ A + + + + A + + K + +L
Sbjct: 2 LPKAAIERIFRQGIGERRLSQDAKDTIYDFVPTMAEYVANAAKSVLDASGKKTLMEEHLK 61
Query: 99 LA-----IKNDEELAKLLCGVT----IAQGGVLPHI--EPVLLTKKTNEYYIQQ--EYDI 145
++ E+ L G I + + + V L K ++ E
Sbjct: 62 ALADVLMVEGVEDYDGELFGRATVRRILKRAGIERASSDAVDLYNKLICRATEELGEKAA 121
Query: 146 FTASDNKKSRITPRYLMLAIKN 167
A ++ + + + AI
Sbjct: 122 EYADEDGRKTVQGEDVEKAITY 143
>d1htaa_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanothermus
fervidus, histone A [TaxId: 2180]}
Length = 68
Score = 32.4 bits (74), Expect = 0.005
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Query: 40 PVSRIQRYLKRGNYSERIGIGASVFLAATLEYLVAEILELAGNAASDNKKSRITPRYLML 99
P++ I R +K +ER+ A + LA LE + EI A A + I + L
Sbjct: 5 PIAPIGRIIKNAG-AERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDIEL 63
Query: 100 AIK 102
A K
Sbjct: 64 ARK 66
>d1jfib_ a.22.1.3 (B:) Negative cofactor 2, NC2, beta chain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 135
Score = 30.6 bits (69), Expect = 0.067
Identities = 11/67 (16%), Positives = 28/67 (41%)
Query: 39 FPVSRIQRYLKRGNYSERIGIGASVFLAATLEYLVAEILELAGNAASDNKKSRITPRYLM 98
P + I + +K + R+ A + + I A + ++K I+P +++
Sbjct: 5 IPRAAINKMIKETLPNVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVI 64
Query: 99 LAIKNDE 105
A+++
Sbjct: 65 QALESLG 71
>d1o0xa_ d.127.1.1 (A:) Methionine aminopeptidase {Thermotoga
maritima [TaxId: 2336]}
Length = 249
Score = 26.1 bits (56), Expect = 3.4
Identities = 8/33 (24%), Positives = 11/33 (33%), Gaps = 3/33 (9%)
Query: 98 MLAIKNDEELAKLLCGVTIAQGG---VLPHIEP 127
M+ IK E+ K+ V I P
Sbjct: 1 MIRIKTPSEIEKMKKAGKAVAVALREVRKVIVP 33
Score = 26.1 bits (56), Expect = 3.4
Identities = 8/33 (24%), Positives = 11/33 (33%), Gaps = 3/33 (9%)
Query: 162 MLAIKNDEELAKLLCGVTIAQGG---VLPHIEP 191
M+ IK E+ K+ V I P
Sbjct: 1 MIRIKTPSEIEKMKKAGKAVAVALREVRKVIVP 33
>d2gdta1 d.346.1.1 (A:2-116) Nsp1 {SARS coronavirus [TaxId: 227859]}
Length = 115
Score = 24.2 bits (52), Expect = 8.2
Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 169 EELAKLLCGVTIAQGGVLPHIE-PVLLTKKTNGKNTS 204
E L CG+ + GVLP +E P + K+++ +T+
Sbjct: 32 EHLKNGTCGLVELEKGVLPQLEQPYVFIKRSDALSTN 68
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.314 0.132 0.359
Gapped
Lambda K H
0.267 0.0539 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 717,043
Number of extensions: 31988
Number of successful extensions: 87
Number of sequences better than 10.0: 1
Number of HSP's gapped: 81
Number of HSP's successfully gapped: 19
Length of query: 209
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 128
Effective length of database: 1,295,466
Effective search space: 165819648
Effective search space used: 165819648
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 51 (23.9 bits)