BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5188
(109 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1VB7|A Chain A, Solution Structure Of The Pdz Domain Of Pdz And Lim Domain
2
Length = 94
Score = 74.7 bits (182), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 35/70 (50%), Positives = 45/70 (64%)
Query: 40 WGFRLTGGRDFGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGS 99
WGFR++GGRDF TP+ V +VT AE + GD+IV+INGQ + M H EAQ I S
Sbjct: 18 WGFRISGGRDFHTPIIVTKVTERGKAEAADLRPGDIIVAINGQSAENMLHAEAQSKIRQS 77
Query: 100 GNTLTLQILR 109
+ L LQ+ R
Sbjct: 78 ASPLRLQLDR 87
>pdb|2V1W|A Chain A, Crystal Structure Of Human Lim Protein Ril (Pdlim4) Pdz
Domain Bound To The C-Terminal Peptide Of Human Alpha-
Actinin-1
pdb|2V1W|B Chain B, Crystal Structure Of Human Lim Protein Ril (Pdlim4) Pdz
Domain Bound To The C-Terminal Peptide Of Human Alpha-
Actinin-1
Length = 90
Score = 74.7 bits (182), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 36/71 (50%), Positives = 45/71 (63%)
Query: 39 AWGFRLTGGRDFGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIG 98
WGFRL GGRDF PLT+ RV S A + GD+I +ING+ T+ MTH+EAQ I G
Sbjct: 13 PWGFRLVGGRDFSAPLTISRVHAGSKAALAALCPGDLIQAINGESTELMTHLEAQNRIKG 72
Query: 99 SGNTLTLQILR 109
+ LTL + R
Sbjct: 73 CHDHLTLSVSR 83
>pdb|3PDV|A Chain A, Structure Of The Pdlim2 Pdz Domain In Complex With The
C-Terminal 6- Peptide Extension Of Ns1
Length = 89
Score = 73.6 bits (179), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 45/71 (63%)
Query: 39 AWGFRLTGGRDFGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIG 98
WGFR+TGGRDF TP+ V +V A++ + GD+IV+ING+ + M H EAQ I
Sbjct: 12 PWGFRITGGRDFHTPIMVTKVAERGKAKDADLRPGDIIVAINGESAEGMLHAEAQSKIRQ 71
Query: 99 SGNTLTLQILR 109
S + L LQ+ R
Sbjct: 72 SPSPLRLQLDR 82
>pdb|2PA1|A Chain A, Structure Of The Pdz Domain Of Human Pdlim2 Bound To A
C-Terminal Extension From Human Beta-Tropomyosin
Length = 87
Score = 73.6 bits (179), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 45/71 (63%)
Query: 39 AWGFRLTGGRDFGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIG 98
WGFR+TGGRDF TP+ V +V A++ + GD+IV+ING+ + M H EAQ I
Sbjct: 13 PWGFRITGGRDFHTPIMVTKVAERGKAKDADLRPGDIIVAINGESAEGMLHAEAQSKIRQ 72
Query: 99 SGNTLTLQILR 109
S + L LQ+ R
Sbjct: 73 SPSPLRLQLDR 83
>pdb|2EEG|A Chain A, Solution Structure Of Pdz Domain Of Pdz And Lim Domain
Protein
Length = 94
Score = 72.4 bits (176), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 35/70 (50%), Positives = 44/70 (62%)
Query: 38 EAWGFRLTGGRDFGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHII 97
WGFRL GGRDF PLT+ RV S A + GD+I +ING+ T+ MTH+EAQ I
Sbjct: 18 SPWGFRLVGGRDFSAPLTISRVHAGSKAALAALCPGDLIQAINGESTELMTHLEAQNRIK 77
Query: 98 GSGNTLTLQI 107
G + LTL +
Sbjct: 78 GCHDHLTLSV 87
>pdb|2PKT|A Chain A, Crystal Structure Of The Human Clp-36 (Pdlim1) Bound To
The C-Terminal Peptide Of Human Alpha-Actinin-1
Length = 91
Score = 70.9 bits (172), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 45/71 (63%)
Query: 39 AWGFRLTGGRDFGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIG 98
WGFRL GG+DF PL + RVT S A + +GD+I +I+G+ T MTH+EAQ I G
Sbjct: 14 PWGFRLVGGKDFEQPLAISRVTPGSKAALANLCIGDVITAIDGENTSNMTHLEAQNRIKG 73
Query: 99 SGNTLTLQILR 109
+ LTL + R
Sbjct: 74 CTDNLTLTVAR 84
>pdb|1RGW|A Chain A, Solution Structure Of Zasp's Pdz Domain
Length = 85
Score = 70.1 bits (170), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 45/71 (63%)
Query: 39 AWGFRLTGGRDFGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIG 98
WGFRL GG+DF PLT+ R+T S A + + GD++V+I+G T MTH+EAQ I
Sbjct: 12 PWGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTMTHLEAQNKIKS 71
Query: 99 SGNTLTLQILR 109
+ L+L + +
Sbjct: 72 ASYNLSLTLQK 82
>pdb|2Q3G|A Chain A, Structure Of The Pdz Domain Of Human Pdlim7 Bound To A C-
Terminal Extension From Human Beta-Tropomyosin
pdb|2Q3G|B Chain B, Structure Of The Pdz Domain Of Human Pdlim7 Bound To A C-
Terminal Extension From Human Beta-Tropomyosin
Length = 89
Score = 70.1 bits (170), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 46/70 (65%)
Query: 40 WGFRLTGGRDFGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGS 99
WGFRL GG+DF PL++ R+T A + G+ VGD ++SI+G+ ++TH+EAQ I
Sbjct: 15 WGFRLQGGKDFNVPLSISRLTPGGKAAQAGVAVGDWVLSIDGENAGSLTHIEAQNKIRAC 74
Query: 100 GNTLTLQILR 109
G L+L + R
Sbjct: 75 GERLSLGLSR 84
>pdb|1WJL|A Chain A, Solution Structure Of Pdz Domain Of Mouse Cypher Protein
Length = 90
Score = 69.7 bits (169), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 45/71 (63%)
Query: 39 AWGFRLTGGRDFGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIG 98
WGFRL GG+DF PLT+ R+T S A + + GD++V+I+G T MTH+EAQ I
Sbjct: 19 PWGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTMTHLEAQNKIKS 78
Query: 99 SGNTLTLQILR 109
+ L+L + +
Sbjct: 79 ASYNLSLTLQK 89
>pdb|2UZC|A Chain A, Structure Of Human Pdlim5 In Complex With The C-Terminal
Peptide Of Human Alpha-Actinin-1
pdb|2UZC|B Chain B, Structure Of Human Pdlim5 In Complex With The C-Terminal
Peptide Of Human Alpha-Actinin-1
pdb|2UZC|C Chain C, Structure Of Human Pdlim5 In Complex With The C-Terminal
Peptide Of Human Alpha-Actinin-1
pdb|2UZC|D Chain D, Structure Of Human Pdlim5 In Complex With The C-Terminal
Peptide Of Human Alpha-Actinin-1
pdb|2UZC|E Chain E, Structure Of Human Pdlim5 In Complex With The C-Terminal
Peptide Of Human Alpha-Actinin-1
Length = 88
Score = 65.1 bits (157), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 43/71 (60%)
Query: 39 AWGFRLTGGRDFGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIG 98
WGFRL GG+DF PLT+ + A + + +GD+++SI+G Q MTH+EAQ I G
Sbjct: 14 PWGFRLQGGKDFNMPLTISSLKDGGKAAQANVRIGDVVLSIDGINAQGMTHLEAQNKIKG 73
Query: 99 SGNTLTLQILR 109
+L + + R
Sbjct: 74 CTGSLNMTLQR 84
>pdb|1V5L|A Chain A, Solution Structure Of Pdz Domain Of Mouse Alpha-Actinin-2
Associated Lim Protein
Length = 103
Score = 64.7 bits (156), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 44/71 (61%)
Query: 39 AWGFRLTGGRDFGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIG 98
WGFRL+GG DF PL + R+T S A + GD+I++I+G T++MTH +AQ I
Sbjct: 16 PWGFRLSGGIDFNQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESMTHADAQDRIKA 75
Query: 99 SGNTLTLQILR 109
+ L L+I R
Sbjct: 76 ASYQLCLKIDR 86
>pdb|1WF7|A Chain A, Solution Structure Of The Pdz Domain Of Enigma Homologue
Protein
Length = 103
Score = 63.2 bits (152), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 42/70 (60%)
Query: 40 WGFRLTGGRDFGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGS 99
WGFRL GG+DF PLT+ + A + + +GD+++SI+G Q MTH+EAQ I
Sbjct: 17 WGFRLQGGKDFNMPLTISSLKDGGKASQAHVRIGDVVLSIDGISAQGMTHLEAQNKIKAC 76
Query: 100 GNTLTLQILR 109
+L + + R
Sbjct: 77 TGSLNMTLQR 86
>pdb|2R4H|B Chain B, Crystal Structure Of A C1190s Mutant Of The 6th Pdz Domain
Of Human Membrane Associated Guanylate Kinase
pdb|2R4H|A Chain A, Crystal Structure Of A C1190s Mutant Of The 6th Pdz Domain
Of Human Membrane Associated Guanylate Kinase
pdb|2R4H|C Chain C, Crystal Structure Of A C1190s Mutant Of The 6th Pdz Domain
Of Human Membrane Associated Guanylate Kinase
Length = 112
Score = 52.0 bits (123), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 37 CEAWGFRLTGGRDFGTPLTVLRVTGTSVAEEGG-MEVGDMIVSINGQCTQAMTHVEAQQH 95
+ +GF L GGR++ L VLR+ AE G M +GD I+ ING+ T+ M H A +
Sbjct: 34 AKGFGFSLRGGREYNMDLYVLRLAEDGPAERSGKMRIGDEILEINGETTKNMKHSRAIEL 93
Query: 96 IIGSGNTLTLQILR 109
I G + L + R
Sbjct: 94 IKNGGRRVRLFLKR 107
>pdb|1WFV|A Chain A, Solution Structure Of The Fifth Pdz Domain Of Human
Membrane Associated Guanylate Kinase Inverted-2
(Kiaa0705 Protein)
Length = 103
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 37 CEAWGFRLTGGRDFGTPLTVLRVTGTSVA-EEGGMEVGDMIVSINGQCTQAMTHVEAQQH 95
+ +GF + GGR++ L VLR+ A G M VGD I+ ING+ T+ MTH A +
Sbjct: 21 AKGFGFSIRGGREYKMDLYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRDMTHARAIEL 80
Query: 96 IIGSGNTLTLQILR 109
I G + L + R
Sbjct: 81 IKSGGRRVRLLLKR 94
>pdb|2DJT|A Chain A, Solution Structures Of The Pdz Domain Of Human Unnamed
Protein Product
Length = 104
Score = 48.9 bits (115), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 41/74 (55%), Gaps = 3/74 (4%)
Query: 39 AWGFRLTGGRDFG--TPLTVLRVTGTSVAEE-GGMEVGDMIVSINGQCTQAMTHVEAQQH 95
+G L GGRD TPL V + A+ G +EVGD+++ ING+ TQ +TH +A +
Sbjct: 23 GFGLTLGGGRDVAGDTPLAVRGLLKDGPAQRCGRLEVGDLVLHINGESTQGLTHAQAVER 82
Query: 96 IIGSGNTLTLQILR 109
I G L L I R
Sbjct: 83 IRAGGPQLHLVIRR 96
>pdb|1UEZ|A Chain A, Solution Structure Of The First Pdz Domain Of Human
Kiaa1526 Protein
Length = 101
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 38 EAWGFRLTGGRDFGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHII 97
E GF + GG + G + V V S+AE+ G+ VGD I+ +N + +TH EA + +
Sbjct: 21 EGLGFSIRGGSEHGVGIYVSLVEPGSLAEKEGLRVGDQILRVNDKSLARVTHAEAVKALK 80
Query: 98 GSGNTLTLQI 107
GS L L +
Sbjct: 81 GS-KKLVLSV 89
>pdb|1Z86|A Chain A, Solution Structure Of The Pdz Domain Of Alpha-Syntrophin
Length = 87
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 40 WGFRLTGGRDFGTPLTVLRV-TGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIG 98
G + GGR+ P+ + ++ G + + + VGD I+S+NG+ + TH EA Q +
Sbjct: 14 LGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKK 73
Query: 99 SGNTLTLQI 107
+G + L++
Sbjct: 74 TGKEVVLEV 82
>pdb|2PDZ|A Chain A, Solution Structure Of The Syntrophin Pdz Domain In Complex
With The Peptide Gvkeslv, Nmr, 15 Structures
Length = 86
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 40 WGFRLTGGRDFGTPLTVLRV-TGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIG 98
G + GGR+ P+ + ++ G + + + VGD I+S+NG+ + TH EA Q +
Sbjct: 14 LGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKK 73
Query: 99 SGNTLTLQI 107
+G + L++
Sbjct: 74 TGKEVVLEV 82
>pdb|1QAV|A Chain A, Unexpected Modes Of Pdz Domain Scaffolding Revealed By
Structure Of Nnos-Syntrophin Complex
Length = 90
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 40 WGFRLTGGRDFGTPLTVLRV-TGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIG 98
G + GGR+ P+ + ++ G + + + VGD I+S+NG+ + TH EA Q +
Sbjct: 18 LGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKK 77
Query: 99 SGNTLTLQI 107
+G + L++
Sbjct: 78 TGKEVVLEV 86
>pdb|2DKR|A Chain A, Solution Structure Of The Pdz Domain From Human Lin-7
Homolog B
Length = 93
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 38 EAWGFRLTGGRDFGTPLTVLRVTGTSVAE-EGGMEVGDMIVSINGQCTQAMTHVEA 92
E GF + GG++ +P+ + RV VA+ GG++ GD ++S+NG + H +A
Sbjct: 16 EGLGFNIMGGKEQNSPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEGEQHEKA 71
>pdb|1Z87|A Chain A, Solution Structure Of The Split Ph-Pdz Supramodule Of
Alpha- Syntrophin
Length = 263
Score = 39.3 bits (90), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Query: 41 GFRLTGGRDFGTPLTVLRV-TGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGS 99
G + GGR+ P+ + ++ G + + + VGD I+S+NG+ + TH EA Q + +
Sbjct: 92 GISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKT 151
Query: 100 GNTLTLQI 107
G + L++
Sbjct: 152 GKEVVLEV 159
>pdb|2DC2|A Chain A, Solution Structure Of Pdz Domain
Length = 103
Score = 39.3 bits (90), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 38 EAWGFRLTGGRDFGTPLTVLRVTGTSVAEE-GGMEVGDMIVSINGQCTQAMTHVEA 92
E G +TGG++ G P+ + + A+ GG+ VGD I+++NG + H EA
Sbjct: 21 EGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEA 76
>pdb|4E34|A Chain A, Crystal Structure Of Cftr Associated Ligand (Cal) Pdz
Domain Bound To Ical36 (Ansrwptsii) Peptide
pdb|4E34|B Chain B, Crystal Structure Of Cftr Associated Ligand (Cal) Pdz
Domain Bound To Ical36 (Ansrwptsii) Peptide
pdb|4E35|A Chain A, Crystal Structure Of Cftr Associated Ligand (Cal) Pdz
Domain Bound To Ical36-L (Ansrwptsil) Peptide
pdb|4E35|B Chain B, Crystal Structure Of Cftr Associated Ligand (Cal) Pdz
Domain Bound To Ical36-L (Ansrwptsil) Peptide
Length = 87
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 38 EAWGFRLTGGRDFGTPLTVLRVTGTSVAEE-GGMEVGDMIVSINGQCTQAMTHVEA 92
E G +TGG++ G P+ + + A+ GG+ VGD I+++NG + H EA
Sbjct: 14 EGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEA 69
>pdb|2LOB|A Chain A, Pdz Domain Of Cal (Cystic Fibrosis Transmembrane
Regulator-Associated Ligand)
Length = 112
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 38 EAWGFRLTGGRDFGTPLTVLRVTGTSVAEE-GGMEVGDMIVSINGQCTQAMTHVEA 92
E G +TGG++ G P+ + + A+ GG+ VGD I+++NG + H EA
Sbjct: 39 EGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEA 94
>pdb|2FNE|A Chain A, The Crystal Structure Of The 13th Pdz Domain Of Mpdz
pdb|2FNE|B Chain B, The Crystal Structure Of The 13th Pdz Domain Of Mpdz
pdb|2FNE|C Chain C, The Crystal Structure Of The 13th Pdz Domain Of Mpdz
Length = 117
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 43/77 (55%), Gaps = 8/77 (10%)
Query: 38 EAWGFRLTGGRDFGTPLTVLRVTGTSV------AEEGGMEVGDMIVSINGQCTQAMTHVE 91
+ GF + GG +G+P L + +V +E+G ++ GD I+++NGQ + +TH E
Sbjct: 36 DGLGFSIVGG--YGSPHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEE 93
Query: 92 AQQHIIGSGNTLTLQIL 108
A + + T+TL +L
Sbjct: 94 AVAILKRTKGTVTLMVL 110
>pdb|3KHF|A Chain A, The Crystal Structure Of The Pdz Domain Of Human
Microtubule Associated SerineTHREONINE KINASE 3 (MAST3)
pdb|3KHF|B Chain B, The Crystal Structure Of The Pdz Domain Of Human
Microtubule Associated SerineTHREONINE KINASE 3 (MAST3)
Length = 99
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 30/51 (58%)
Query: 56 VLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQ 106
V V S A+E G+ GD+I ING+ + H++ + ++ SGN ++L+
Sbjct: 38 VWSVEDGSPAQEAGLRAGDLITHINGESVLGLVHMDVVELLLKSGNKISLR 88
>pdb|2OSG|A Chain A, Solution Structure And Binding Property Of The Domain-
Swapped Dimer Of Zo2pdz2
pdb|2OSG|B Chain B, Solution Structure And Binding Property Of The Domain-
Swapped Dimer Of Zo2pdz2
Length = 83
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 7/73 (9%)
Query: 38 EAWGFRLTGGRDFGTPLTVLRVTGTSVA-EEGGMEVGDMIVSINGQCTQAMTHVEAQQHI 96
E +G RL G+ + V +T T +A ++G + GD+I+ ING T+ M+ +A++ I
Sbjct: 13 EEYGLRL------GSQIFVKEMTRTGLATKDGNLHEGDIILKINGTVTENMSLTDARKLI 66
Query: 97 IGSGNTLTLQILR 109
S L L +LR
Sbjct: 67 EKSRGKLQLVVLR 79
>pdb|3E17|A Chain A, Crystal Structure Of The Second Pdz Domain From Human Zona
Occludens-2
pdb|3E17|B Chain B, Crystal Structure Of The Second Pdz Domain From Human Zona
Occludens-2
Length = 88
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 7/73 (9%)
Query: 38 EAWGFRLTGGRDFGTPLTVLRVTGTSVA-EEGGMEVGDMIVSINGQCTQAMTHVEAQQHI 96
E +G RL G+ + V +T T +A ++G + GD+I+ ING T+ M+ +A++ I
Sbjct: 13 EEYGLRL------GSQIFVKEMTRTGLATKDGNLHEGDIILKINGTVTENMSLTDARKLI 66
Query: 97 IGSGNTLTLQILR 109
S L L +LR
Sbjct: 67 EKSRGKLQLVVLR 79
>pdb|2VRF|A Chain A, Crystal Structure Of The Human Beta-2-Syntrophin Pdz
Domain
pdb|2VRF|B Chain B, Crystal Structure Of The Human Beta-2-Syntrophin Pdz
Domain
pdb|2VRF|C Chain C, Crystal Structure Of The Human Beta-2-Syntrophin Pdz
Domain
pdb|2VRF|D Chain D, Crystal Structure Of The Human Beta-2-Syntrophin Pdz
Domain
Length = 95
Score = 36.2 bits (82), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 40 WGFRLTGGRDFGTPLTVLRV-TGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIG 98
G + GGR+ P+ + ++ G + + + +GD I+S+NG + TH +A Q +
Sbjct: 17 LGISIKGGRENRMPILISKIFPGLAADQSRALRLGDAILSVNGTDLRQATHDQAVQALKR 76
Query: 99 SGNTLTLQI 107
+G + L++
Sbjct: 77 AGKEVLLEV 85
>pdb|2EGO|A Chain A, Crystal Structure Of Tamalin Pdz Domain
pdb|2EGO|B Chain B, Crystal Structure Of Tamalin Pdz Domain
pdb|2EGN|A Chain A, Crystal Structure Of Tamalin Pdz Domain In Complex With
Mglur5 C-Terminal Peptide
Length = 96
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 28/53 (52%)
Query: 56 VLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQIL 108
V RV +S A+ G+ GD I S+NG + + H E I SGN L L+ L
Sbjct: 41 VARVHESSPAQLAGLTPGDTIASVNGLNVEGIRHREIVDIIKASGNVLRLETL 93
>pdb|3K1R|A Chain A, Structure Of Harmonin Npdz1 In Complex With The Sam-Pbm Of
Sans
Length = 192
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 38 EAWGFRLTGGRDFGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHII 97
E G + GG +FG L + + A+ G++VGD IV ING + TH E ++I
Sbjct: 96 EGLGLSVRGGLEFGCGLFISHLIKGGQADSVGLQVGDEIVRINGYSISSCTHEEV-INLI 154
Query: 98 GSGNTLTLQI 107
+ T+++++
Sbjct: 155 RTEKTVSIKV 164
>pdb|2EGK|A Chain A, Crystal Structure Of Tamalin Pdz-Intrinsic Ligand Fusion
Protein
pdb|2EGK|B Chain B, Crystal Structure Of Tamalin Pdz-Intrinsic Ligand Fusion
Protein
pdb|2EGK|C Chain C, Crystal Structure Of Tamalin Pdz-Intrinsic Ligand Fusion
Protein
pdb|2EGK|D Chain D, Crystal Structure Of Tamalin Pdz-Intrinsic Ligand Fusion
Protein
Length = 101
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 28/53 (52%)
Query: 56 VLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQIL 108
V RV +S A+ G+ GD I S+NG + + H E I SGN L L+ L
Sbjct: 41 VARVHESSPAQLAGLTPGDTIASVNGLNVEGIRHREIVDIIKASGNVLRLETL 93
>pdb|3PS4|A Chain A, Pdz Domain From Human Microtubule-Associated
SerineTHREONINE-Protein Kinase 1
pdb|3PS4|B Chain B, Pdz Domain From Human Microtubule-Associated
SerineTHREONINE-Protein Kinase 1
pdb|3PS4|C Chain C, Pdz Domain From Human Microtubule-Associated
SerineTHREONINE-Protein Kinase 1
pdb|3PS4|D Chain D, Pdz Domain From Human Microtubule-Associated
SerineTHREONINE-Protein Kinase 1
Length = 102
Score = 35.0 bits (79), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 24/41 (58%)
Query: 65 AEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTL 105
A+E G+ GD+I +NG+ M H E + I+ SGN + +
Sbjct: 50 AQEAGLCAGDLITHVNGEPVHGMVHPEVVELILKSGNKVAV 90
>pdb|1UEW|A Chain A, Solution Structure Of The Forth Pdz Domain Of Human
Atrophin-1 Interacting Protein 1 (Kiaa0705 Protein)
Length = 114
Score = 35.0 bits (79), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 8/79 (10%)
Query: 38 EAWGF-------RLTGGRDFGTPLTVLRVTGTSVAEE-GGMEVGDMIVSINGQCTQAMTH 89
E +GF R G P + R+ S A+ ++VGD I+++NGQ M H
Sbjct: 22 EGFGFVIISSLNRPESGSTITVPHKIGRIIDGSPADRCAKLKVGDRILAVNGQSIINMPH 81
Query: 90 VEAQQHIIGSGNTLTLQIL 108
+ + I +G ++TL+I+
Sbjct: 82 ADIVKLIKDAGLSVTLRII 100
>pdb|2PNT|A Chain A, Crystal Structure Of The Pdz Domain Of Human Grasp (Grp1)
In Complex With The C-Terminal Peptide Of The
Metabotropic Glutamate Receptor Type 1
pdb|2PNT|B Chain B, Crystal Structure Of The Pdz Domain Of Human Grasp (Grp1)
In Complex With The C-Terminal Peptide Of The
Metabotropic Glutamate Receptor Type 1
Length = 98
Score = 35.0 bits (79), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 28/53 (52%)
Query: 56 VLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQIL 108
V RV +S A+ G+ GD I S+NG + + H E I SGN L L+ L
Sbjct: 41 VCRVHESSPAQLAGLTPGDTIASVNGLNVEGIRHREIVDIIKASGNVLRLETL 93
>pdb|3OTP|A Chain A, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|B Chain B, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|C Chain C, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|D Chain D, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|E Chain E, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|F Chain F, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
Length = 459
Score = 34.7 bits (78), Expect = 0.012, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 31/54 (57%)
Query: 56 VLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQILR 109
V +V S A + G++ GD+I S+NG+ + + AQ + G+ LTL +LR
Sbjct: 290 VSQVLPNSSAAKAGIKAGDVITSLNGKPISSFAALRAQVGTMPVGSKLTLGLLR 343
>pdb|4A8D|A Chain A, Degp Dodecamer With Bound Omp
pdb|4A8D|B Chain B, Degp Dodecamer With Bound Omp
pdb|4A8D|C Chain C, Degp Dodecamer With Bound Omp
pdb|4A8D|D Chain D, Degp Dodecamer With Bound Omp
pdb|4A8D|E Chain E, Degp Dodecamer With Bound Omp
pdb|4A8D|F Chain F, Degp Dodecamer With Bound Omp
pdb|4A8D|G Chain G, Degp Dodecamer With Bound Omp
pdb|4A8D|H Chain H, Degp Dodecamer With Bound Omp
pdb|4A8D|I Chain I, Degp Dodecamer With Bound Omp
pdb|4A8D|J Chain J, Degp Dodecamer With Bound Omp
pdb|4A8D|K Chain K, Degp Dodecamer With Bound Omp
pdb|4A8D|L Chain L, Degp Dodecamer With Bound Omp
Length = 448
Score = 34.7 bits (78), Expect = 0.013, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 31/54 (57%)
Query: 56 VLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQILR 109
V +V S A + G++ GD+I S+NG+ + + AQ + G+ LTL +LR
Sbjct: 290 VSQVLPNSSAAKAGIKAGDVITSLNGKPISSFAALRAQVGTMPVGSKLTLGLLR 343
>pdb|3MH5|A Chain A, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
pdb|3MH5|B Chain B, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
pdb|3MH6|A Chain A, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
Length = 456
Score = 34.7 bits (78), Expect = 0.013, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 31/54 (57%)
Query: 56 VLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQILR 109
V +V S A + G++ GD+I S+NG+ + + AQ + G+ LTL +LR
Sbjct: 290 VSQVLPNSSAAKAGIKAGDVITSLNGKPISSFAALRAQVGTMPVGSKLTLGLLR 343
>pdb|3MH4|A Chain A, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
pdb|3MH4|B Chain B, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
Length = 456
Score = 34.7 bits (78), Expect = 0.013, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 31/54 (57%)
Query: 56 VLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQILR 109
V +V S A + G++ GD+I S+NG+ + + AQ + G+ LTL +LR
Sbjct: 290 VSQVLPNSSAAKAGIKAGDVITSLNGKPISSFAALRAQVGTMPVGSKLTLGLLR 343
>pdb|2ZLE|A Chain A, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|B Chain B, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|C Chain C, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|E Chain E, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|F Chain F, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|G Chain G, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|H Chain H, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|I Chain I, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|J Chain J, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|K Chain K, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|L Chain L, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|M Chain M, Cryo-Em Structure Of Degp12OMP
Length = 448
Score = 34.7 bits (78), Expect = 0.013, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 31/54 (57%)
Query: 56 VLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQILR 109
V +V S A + G++ GD+I S+NG+ + + AQ + G+ LTL +LR
Sbjct: 290 VSQVLPNSSAAKAGIKAGDVITSLNGKPISSFAALRAQVGTMPVGSKLTLGLLR 343
>pdb|2Z17|A Chain A, Crystal Sturcture Of Pdz Domain From Human Pleckstrin
Homology, Sec7
Length = 104
Score = 34.7 bits (78), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 30/53 (56%)
Query: 56 VLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQIL 108
+ ++ S A G++ GD++ +ING T+ T+ + I SGN LT++ L
Sbjct: 52 ICKIQEDSPAHCAGLQAGDVLANINGVSTEGFTYKQVVDLIRSSGNLLTIETL 104
>pdb|2KQF|A Chain A, Solution Structure Of Mast205-Pdz Complexed With The
C-Terminus Of A Rabies Virus G Protein
pdb|2KYL|A Chain A, Solution Structure Of Mast2-Pdz Complexed With The
C-Terminus Of Pten
Length = 96
Score = 34.7 bits (78), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 65 AEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQ 106
A E G+ GD+I +NG+ + H E + I+ SGN + +
Sbjct: 49 ASEAGLRQGDLITHVNGEPVHGLVHTEVVELILKSGNKVAIS 90
>pdb|1X6D|A Chain A, Solution Structures Of The Pdz Domain Of Human
Interleukin- 16
Length = 119
Score = 34.7 bits (78), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Query: 40 WGFRLTGGRDFGTP-LTVLRVTGTSVA-EEGGMEVGDMIVSINGQCTQAMTHVEA 92
GF L GG D +TV RV +A +EG ++ G+ ++SING+ + TH +A
Sbjct: 29 LGFSLAGGADLENKVITVHRVFPNGLASQEGTIQKGNEVLSINGKSLKGTTHHDA 83
>pdb|2EDP|A Chain A, Solution Structure Of The Pdz Domain From Human Shroom
Family Member 4
Length = 100
Score = 34.7 bits (78), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Query: 39 AWGFRLTGGRDFGTPLTVLRV-TGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHII 97
WGF L GG + PLTV ++ G A M GD +V+ING + EA I
Sbjct: 22 PWGFTLKGGLEHCEPLTVSKIEDGGKAALSQKMRTGDELVNINGTPLYG-SRQEALILIK 80
Query: 98 GSGNTLTLQILR 109
GS L L + R
Sbjct: 81 GSFRILKLIVRR 92
>pdb|1UF1|A Chain A, Solution Structure Of The Second Pdz Domain Of Human
Kiaa1526 Protein
Length = 128
Score = 34.7 bits (78), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 30/54 (55%)
Query: 39 AWGFRLTGGRDFGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEA 92
+ G + GG ++G + + V S AE G++VGD I+ +NG+ + H EA
Sbjct: 33 SLGLTIRGGAEYGLGIYITGVDPGSEAEGSGLKVGDQILEVNGRSFLNILHDEA 86
>pdb|1KY9|A Chain A, Crystal Structure Of Degp (Htra)
pdb|1KY9|B Chain B, Crystal Structure Of Degp (Htra)
pdb|3OU0|A Chain A, Re-Refined 3cs0
Length = 448
Score = 34.3 bits (77), Expect = 0.018, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 30/54 (55%)
Query: 56 VLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQILR 109
V +V S A + G++ GD+I S+NG+ + + AQ G+ LTL +LR
Sbjct: 290 VSQVLPNSSAAKAGIKAGDVITSLNGKPISSFAALRAQVGTXPVGSKLTLGLLR 343
>pdb|3MH7|A Chain A, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
Length = 456
Score = 34.3 bits (77), Expect = 0.018, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 30/54 (55%)
Query: 56 VLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQILR 109
V +V S A + G++ GD+I S+NG+ + + AQ G+ LTL +LR
Sbjct: 290 VSQVLPNSSAAKAGIKAGDVITSLNGKPISSFAALRAQVGTXPVGSKLTLGLLR 343
>pdb|3CS0|A Chain A, Crystal Structure Of Degp24
Length = 448
Score = 34.3 bits (77), Expect = 0.018, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 30/54 (55%)
Query: 56 VLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQILR 109
V +V S A + G++ GD+I S+NG+ + + AQ G+ LTL +LR
Sbjct: 290 VSQVLPNSSAAKAGIKAGDVITSLNGKPISSFAALRAQVGTXPVGSKLTLGLLR 343
>pdb|2W4F|A Chain A, Crystal Structure Of The First Pdz Domain Of Human Scrib1
Length = 97
Score = 34.3 bits (77), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 29/54 (53%)
Query: 56 VLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQILR 109
+ RV+ A G+ VGD ++ +NG Q H EA + + G+G + +++ R
Sbjct: 38 ISRVSEEGPAARAGVRVGDKLLEVNGVALQGAEHHEAVEALRGAGTAVQMRVWR 91
>pdb|2HE2|A Chain A, Crystal Structure Of The 3rd Pdz Domain Of Human Discs
Large Homologue 2, Dlg2
pdb|2HE2|B Chain B, Crystal Structure Of The 3rd Pdz Domain Of Human Discs
Large Homologue 2, Dlg2
Length = 102
Score = 33.9 bits (76), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 32/65 (49%)
Query: 41 GFRLTGGRDFGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGSG 100
GF + GG D + G G ++ GD I+S+NG + +H +A + G+G
Sbjct: 17 GFNIVGGEDGEGIFVSFILAGGPADLSGELQRGDQILSVNGIDLRGASHEQAAAALKGAG 76
Query: 101 NTLTL 105
T+T+
Sbjct: 77 QTVTI 81
>pdb|1X5Q|A Chain A, Solution Structure Of The First Pdz Domain Of Scribble
Homolog Protein (Hscrib)
Length = 110
Score = 33.9 bits (76), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 29/54 (53%)
Query: 56 VLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQILR 109
+ RV+ A G+ VGD ++ +NG Q H EA + + G+G + +++ R
Sbjct: 50 ISRVSEEGPAARAGVRVGDKLLEVNGVALQGAEHHEAVEALRGAGTAVQMRVWR 103
>pdb|2I04|A Chain A, X-Ray Crystal Structure Of Magi-1 Pdz1 Bound To The C-
Terminal Peptide Of Hpv18 E6
pdb|2I04|B Chain B, X-Ray Crystal Structure Of Magi-1 Pdz1 Bound To The C-
Terminal Peptide Of Hpv18 E6
Length = 85
Score = 33.5 bits (75), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Query: 40 WGFRLTGGRDFGTPLTVLR-VTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQ--HI 96
+GF + GG + L + V A +G ME GD+IVS+N C TH + +
Sbjct: 13 FGFTVVGGDEPDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKIFQS 72
Query: 97 IGSGNTLTLQILR 109
I G ++ L++ R
Sbjct: 73 IPIGASVDLELCR 85
>pdb|2KPK|A Chain A, Magi-1 Pdz1
pdb|2KPL|A Chain A, Magi-1 Pdz1 E6CT
Length = 129
Score = 33.5 bits (75), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Query: 40 WGFRLTGGRDFGTPLTVLR-VTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQ--HI 96
+GF + GG + L + V A +G ME GD+IVS+N C TH + +
Sbjct: 31 FGFTVVGGDEPDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKIFQS 90
Query: 97 IGSGNTLTLQILR 109
I G ++ L++ R
Sbjct: 91 IPIGASVDLELCR 103
>pdb|2W7R|A Chain A, Structure Of The Pdz Domain Of Human Microtubule
Associated Serine-Threonine Kinase 4
pdb|2W7R|B Chain B, Structure Of The Pdz Domain Of Human Microtubule
Associated Serine-Threonine Kinase 4
Length = 98
Score = 33.5 bits (75), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 26/43 (60%)
Query: 63 SVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTL 105
S A + G++ GD+I ING+ + H E + ++ SGN +++
Sbjct: 44 SPACQAGLKAGDLITHINGEPVHGLVHTEVIELLLKSGNKVSI 86
>pdb|1UHP|A Chain A, Solution Structure Of Rsgi Ruh-005, A Pdz Domain In Human
Cdna, Kiaa1095
Length = 107
Score = 33.5 bits (75), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 28/51 (54%)
Query: 59 VTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQILR 109
V A+EGG+++ D I+ +NG+ TH +A + + + +Q+LR
Sbjct: 49 VDSGPAAKEGGLQIHDRIIEVNGRDLSRATHDQAVEAFKTAKEPIVVQVLR 99
>pdb|1UEQ|A Chain A, Solution Structure Of The First Pdz Domain Of Human
Atrophin-1 Interacting Protein 1 (Kiaa0705 Protein)
Length = 123
Score = 33.1 bits (74), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 40 WGFRLTGGRDFGTPLTVLRVTGT-SVAEEGGMEVGDMIVSINGQCTQAMTHVE 91
+GF + GG + L V V A++G ME GD+IV IN C TH +
Sbjct: 32 FGFTIIGGDEPDEFLQVKSVIPDGPAAQDGKMETGDVIVYINEVCVLGHTHAD 84
>pdb|2JOA|A Chain A, Htra1 Bound To An Optimized Peptide: Nmr Assignment Of Pdz
Domain And Ligand Resonances
Length = 105
Score = 33.1 bits (74), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 6/65 (9%)
Query: 48 RDFGTPLT---VLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLT 104
RDF ++ ++ V + AE GG++ D+I+SINGQ + V +I +TL
Sbjct: 28 RDFPDVISGAYIIEVIPDTPAEAGGLKENDVIISINGQSVVSANDV---SDVIKRESTLN 84
Query: 105 LQILR 109
+ + R
Sbjct: 85 MVVRR 89
>pdb|2EDZ|A Chain A, Solution Structures Of The Pdz Domain Of Mus Musculus Pdz
Domain-Containing Protein 1
Length = 114
Score = 33.1 bits (74), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Query: 40 WGFRLTGGRDFGTPLTVLRVTGT-SVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIG 98
+GF L +D T ++RV S AE+ G+ GD ++ ING H + + +
Sbjct: 27 YGFFLRIEKD--TDGHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVDKEEHAQVVELVRK 84
Query: 99 SGNTLTLQIL 108
SGN++TL +L
Sbjct: 85 SGNSVTLLVL 94
>pdb|3R69|A Chain A, Molecular Analysis Of The Interaction Of The Hdl-Receptor
Sr-Bi With The Pdz3 Domain Of Its Adaptor Protein Pdzk1
pdb|3R69|B Chain B, Molecular Analysis Of The Interaction Of The Hdl-Receptor
Sr-Bi With The Pdz3 Domain Of Its Adaptor Protein Pdzk1
Length = 89
Score = 33.1 bits (74), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 40 WGFRLTGGRDFGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGS 99
+GF L G + + + + S AE G++ D++V++NG+ +A+ H + I
Sbjct: 15 YGFYLRAGPEQKGQI-IKDIEPGSPAEAAGLKNNDLVVAVNGKSVEALDHDGVVEMIRKG 73
Query: 100 GNTLTLQIL 108
G+ TL +L
Sbjct: 74 GDQTTLLVL 82
>pdb|3R68|A Chain A, Molecular Analysis Of The Pdz3 Domain Of Pdzk1
Length = 95
Score = 33.1 bits (74), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 37 CEAWGFRLTGGRDFGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHI 96
+GF L G + + + + S AE G++ D++V++NG+ +A+ H + I
Sbjct: 15 SNGYGFYLRAGPEQKGQI-IKDIEPGSPAEAAGLKNNDLVVAVNGKSVEALDHDGVVEMI 73
Query: 97 IGSGNTLTLQIL 108
G+ TL +L
Sbjct: 74 RKGGDQTTLLVL 85
>pdb|2YTW|A Chain A, Solution Structure Of The Pdz-Domain Of Human Protease
Htra 1 Precursor
Length = 118
Score = 32.7 bits (73), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 6/65 (9%)
Query: 48 RDFGTPLT---VLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLT 104
RDF ++ ++ V + AE GG++ D+I+SINGQ + V +I +TL
Sbjct: 41 RDFPDVISGAYIIEVIPDTPAEAGGLKENDVIISINGQSVVSANDV---SDVIKRESTLN 97
Query: 105 LQILR 109
+ + R
Sbjct: 98 MVVRR 102
>pdb|4F8K|A Chain A, Molecular Analysis Of The Interaction Between The
Prostacyclin Receptor And The First Pdz Domain Of Pdzk1
pdb|4F8K|B Chain B, Molecular Analysis Of The Interaction Between The
Prostacyclin Receptor And The First Pdz Domain Of Pdzk1
Length = 109
Score = 32.7 bits (73), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Query: 40 WGFRLTGGRDFGTPLTVLRVTGT-SVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIG 98
+GF L +D T ++RV S AE+ G+ GD ++ ING H + + +
Sbjct: 16 YGFFLRIEKD--TDGHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVDKEEHAQVVELVRK 73
Query: 99 SGNTLTLQIL 108
SGN++TL +L
Sbjct: 74 SGNSVTLLVL 83
>pdb|2KBS|A Chain A, Solution Structure Of Harmonin Pdz2 In Complex With The
Carboxyl Tail Peptide Of Cadherin23
Length = 92
Score = 32.7 bits (73), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 63 SVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQIL 108
S++ E G+E+GD IV +NG + H EA +++ S +LT+ I+
Sbjct: 38 SLSAEVGLEIGDQIVEVNGVDFSNLDHKEA-VNVLKSSRSLTISIV 82
>pdb|1X5N|A Chain A, Solution Structure Of The Second Pdz Domain Of Harmonin
Protein
Length = 114
Score = 32.7 bits (73), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 63 SVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQIL 108
S++ E G+E+GD IV +NG + H EA +++ S +LT+ I+
Sbjct: 52 SLSAEVGLEIGDQIVEVNGVDFSNLDHKEA-VNVLKSSRSLTISIV 96
>pdb|3NGH|A Chain A, Molecular Analysis Of The Interaction Of The Hdl Receptor
Sr-Bi With The Adaptor Protein Pdzk1
pdb|3NGH|B Chain B, Molecular Analysis Of The Interaction Of The Hdl Receptor
Sr-Bi With The Adaptor Protein Pdzk1
Length = 106
Score = 32.7 bits (73), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Query: 40 WGFRLTGGRDFGTPLTVLRVTGT-SVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIG 98
+GF L +D T ++RV S AE+ G+ GD ++ ING H + + +
Sbjct: 15 YGFFLRIEKD--TDGHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVDKEEHAQVVELVRK 72
Query: 99 SGNTLTLQIL 108
SGN++TL +L
Sbjct: 73 SGNSVTLLVL 82
>pdb|2V90|A Chain A, Crystal Structure Of The 3rd Pdz Domain Of Intestine- And
Kidney-enriched Pdz Domain Ikepp (pdzd3)
pdb|2V90|B Chain B, Crystal Structure Of The 3rd Pdz Domain Of Intestine- And
Kidney-enriched Pdz Domain Ikepp (pdzd3)
pdb|2V90|C Chain C, Crystal Structure Of The 3rd Pdz Domain Of Intestine- And
Kidney-enriched Pdz Domain Ikepp (pdzd3)
pdb|2V90|D Chain D, Crystal Structure Of The 3rd Pdz Domain Of Intestine- And
Kidney-enriched Pdz Domain Ikepp (pdzd3)
pdb|2V90|E Chain E, Crystal Structure Of The 3rd Pdz Domain Of Intestine- And
Kidney-enriched Pdz Domain Ikepp (pdzd3)
pdb|2V90|F Chain F, Crystal Structure Of The 3rd Pdz Domain Of Intestine- And
Kidney-enriched Pdz Domain Ikepp (pdzd3)
Length = 96
Score = 32.3 bits (72), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 27/44 (61%)
Query: 65 AEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQIL 108
A++ GM+ GD +V++ G+ + + H E I G G+ ++L ++
Sbjct: 43 AKKAGMQAGDRLVAVAGESVEGLGHEETVSRIQGQGSCVSLTVV 86
>pdb|2XKX|A Chain A, Single Particle Analysis Of Psd-95 In Negative Stain
pdb|2XKX|B Chain B, Single Particle Analysis Of Psd-95 In Negative Stain
Length = 721
Score = 32.3 bits (72), Expect = 0.070, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 30/65 (46%)
Query: 41 GFRLTGGRDFGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGSG 100
GF + GG D + G G + GD I+S+NG + +H +A + +G
Sbjct: 321 GFNIVGGEDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAG 380
Query: 101 NTLTL 105
T+T+
Sbjct: 381 QTVTI 385
>pdb|2D90|A Chain A, Solution Structure Of The Third Pdz Domain Of Pdz Domain
Containing Protein 1
Length = 102
Score = 32.3 bits (72), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 37 CEAWGFRLTGGRDFGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHI 96
+GF L G + + + + S AE G++ D++V++NG+ +A+ H + I
Sbjct: 16 SNGYGFYLRAGPEQKGQI-IKDIEPGSPAEAAGLKNNDLVVAVNGKSVEALDHDGVVEMI 74
Query: 97 IGSGNTLTLQIL 108
G+ TL +L
Sbjct: 75 RKGGDQTTLLVL 86
>pdb|2EEH|A Chain A, Solution Structure Of First Pdz Domain Of Pdz Domain
Containing Protein 7
Length = 100
Score = 32.0 bits (71), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 26/49 (53%)
Query: 40 WGFRLTGGRDFGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMT 88
GF + GG + G + V +V S AE G+ VGD I +NG ++ T
Sbjct: 24 LGFSVRGGSEHGLGIFVSKVEEGSSAERAGLCVGDKITEVNGLSLESTT 72
>pdb|2JIN|A Chain A, Crystal Structure Of Pdz Domain Of Synaptojanin-2 Binding
Protein
Length = 102
Score = 32.0 bits (71), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 39/74 (52%), Gaps = 8/74 (10%)
Query: 41 GFRLTGG-------RDFGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQ 93
GF + GG D G ++ ++ G + A +G ++ GD I+S+NGQ + + H +A
Sbjct: 23 GFNIVGGTDQQYVSNDSGIYVSRIKENGAA-ALDGRLQEGDKILSVNGQDLKNLLHQDAV 81
Query: 94 QHIIGSGNTLTLQI 107
+G ++L++
Sbjct: 82 DLFRNAGYAVSLRV 95
>pdb|2JIK|A Chain A, Crystal Structure Of Pdz Domain Of Synaptojanin-2 Binding
Protein
pdb|2JIK|B Chain B, Crystal Structure Of Pdz Domain Of Synaptojanin-2 Binding
Protein
Length = 101
Score = 32.0 bits (71), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 39/74 (52%), Gaps = 8/74 (10%)
Query: 41 GFRLTGG-------RDFGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQ 93
GF + GG D G ++ ++ G + A +G ++ GD I+S+NGQ + + H +A
Sbjct: 21 GFNIVGGTDQQYVSNDSGIYVSRIKENGAA-ALDGRLQEGDKILSVNGQDLKNLLHQDAV 79
Query: 94 QHIIGSGNTLTLQI 107
+G ++L++
Sbjct: 80 DLFRNAGYAVSLRV 93
>pdb|1GQ4|A Chain A, Structural Determinants Of The Nherf Interaction With
Beta2ar And Pdgfr
Length = 90
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Query: 40 WGFRLTGGR-DFGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIG 98
+GF L G + G + + V S AE+ G+ GD +V +NG+ + TH + I
Sbjct: 15 YGFHLHGEKGKLGQYIRL--VEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRA 72
Query: 99 SGNTLTLQIL 108
+ N + L ++
Sbjct: 73 ALNAVRLLVV 82
>pdb|1G9O|A Chain A, First Pdz Domain Of The Human Na+H+ EXCHANGER REGULATORY
Factor
Length = 91
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Query: 40 WGFRLTGGR-DFGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIG 98
+GF L G + G + + V S AE+ G+ GD +V +NG+ + TH + I
Sbjct: 16 YGFHLHGEKGKLGQYIRL--VEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRA 73
Query: 99 SGNTLTLQIL 108
+ N + L ++
Sbjct: 74 ALNAVRLLVV 83
>pdb|1ZOK|A Chain A, Pdz1 Domain Of Synapse Associated Protein 97
Length = 93
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 39/75 (52%), Gaps = 6/75 (8%)
Query: 41 GFRLTGGRD---FGTPLTVLR---VTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQ 94
GF + GG D G ++ +TG + A++G + V D I+ +N + +TH +A +
Sbjct: 15 GFSIAGGTDNPHIGDDSSIFITKIITGGAAAQDGRLRVNDCILRVNEADVRDVTHSKAVE 74
Query: 95 HIIGSGNTLTLQILR 109
+ +G+ + L + R
Sbjct: 75 ALKEAGSIVRLYVKR 89
>pdb|2Q9V|A Chain A, Crystal Structure Of The C890s Mutant Of The 4th Pdz
Domain Of Human Membrane Associated Guanylate Kinase
Length = 90
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 40 WGFRLTGGRDFGTPLTVLRVTGTSVAE-EGGMEVGDMIVSINGQCTQAMTH 89
+GFR+ GG + G P+ + + A+ +G + GD ++S++G +H
Sbjct: 15 FGFRILGGNEPGEPIYIGHIVPLGAADTDGRLRSGDELISVDGTPVIGKSH 65
>pdb|2IWO|A Chain A, 12th Pdz Domain Of Multiple Pdz Domain Protein Mpdz (Casp
Target)
pdb|2IWO|B Chain B, 12th Pdz Domain Of Multiple Pdz Domain Protein Mpdz (Casp
Target)
pdb|2IWP|A Chain A, 12th Pdz Domain Of Multiple Pdz Domain Protein Mpdz (Casp
Target)
pdb|2IWP|B Chain B, 12th Pdz Domain Of Multiple Pdz Domain Protein Mpdz (Casp
Target)
Length = 120
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 10/78 (12%)
Query: 38 EAWGFRLTGGRDFGTPL-------TVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHV 90
++ G + GG G+PL ++ TG + A+ + VGD IV+I G T+ MTH
Sbjct: 36 DSLGISIAGG--VGSPLGDVPIFIAMMHPTGVA-AQTQKLRVGDRIVTICGTSTEGMTHT 92
Query: 91 EAQQHIIGSGNTLTLQIL 108
+A + + ++ +Q++
Sbjct: 93 QAVNLLKNASGSIEMQVV 110
>pdb|3NZI|A Chain A, Substrate Induced Remodeling Of The Active Site Regulates
Htra1 Activity
Length = 334
Score = 31.2 bits (69), Expect = 0.15, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 6/65 (9%)
Query: 48 RDFGTPLT---VLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLT 104
RDF ++ ++ V + AE GG++ D+I+SINGQ + V +I +TL
Sbjct: 247 RDFPDVISGAYIIEVIPDTPAEAGGLKENDVIISINGQSVVSANDV---SDVIKRESTLN 303
Query: 105 LQILR 109
+ + R
Sbjct: 304 MVVRR 308
>pdb|3NUM|A Chain A, Substrate Induced Remodeling Of The Active Site Regulates
Htra1 Activity
Length = 332
Score = 31.2 bits (69), Expect = 0.15, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 6/65 (9%)
Query: 48 RDFGTPLT---VLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLT 104
RDF ++ ++ V + AE GG++ D+I+SINGQ + V +I +TL
Sbjct: 247 RDFPDVISGAYIIEVIPDTPAEAGGLKENDVIISINGQSVVSANDV---SDVIKRESTLN 303
Query: 105 LQILR 109
+ + R
Sbjct: 304 MVVRR 308
>pdb|2ENO|A Chain A, Solution Structure Of The Pdz Domain From Human
Synaptojanin 2 Binding Protein
Length = 120
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 39/74 (52%), Gaps = 8/74 (10%)
Query: 41 GFRLTGG-------RDFGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQ 93
GF + GG D G ++ ++ G + A +G ++ GD I+S+NGQ + + H +A
Sbjct: 31 GFNIVGGTDQQYVSNDSGIYVSRIKENGAA-ALDGRLQEGDKILSVNGQDLKNLLHQDAV 89
Query: 94 QHIIGSGNTLTLQI 107
+G ++L++
Sbjct: 90 DLFRNAGYAVSLRV 103
>pdb|2G2L|A Chain A, Crystal Structure Of The Second Pdz Domain Of Sap97 In
Complex With A Glur-A C-Terminal Peptide
pdb|2G2L|B Chain B, Crystal Structure Of The Second Pdz Domain Of Sap97 In
Complex With A Glur-A C-Terminal Peptide
Length = 105
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 11/51 (21%), Positives = 31/51 (60%)
Query: 59 VTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQILR 109
+ G + ++G +++GD ++++N C + +TH EA + + + + L++ +
Sbjct: 41 IEGGAAHKDGKLQIGDKLLAVNSVCLEEVTHEEAVTALKNTSDFVYLKVAK 91
>pdb|1I92|A Chain A, Structural Basis Of The Nherf Pdz1-Cftr Interaction
Length = 91
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Query: 40 WGFRLTGGR-DFGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIG 98
+GF L G + G + + V S AE+ G+ GD +V +NG+ + TH + I
Sbjct: 16 YGFHLHGEKGKLGQYIRL--VEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRA 73
Query: 99 SGNTLTLQIL 108
+ N + L ++
Sbjct: 74 ALNAVRLLVV 83
>pdb|1X5R|A Chain A, Solution Structure Of The Fourth Pdz Domain Of Glutamate
Receptor Interacting Protein 2
Length = 112
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
Query: 40 WGFRLTGG----RDFGTPLTVLRVTGTSVAEEGGM-EVGDMIVSINGQCTQAMTHVEAQQ 94
+G +L GG +P V + S AE G+ +VGD ++SING T+ T EA Q
Sbjct: 29 FGLQLQGGIFATETLSSPPLVCFIEPDSPAERCGLLQVGDRVLSINGIATEDGTMEEANQ 88
>pdb|1GQ5|A Chain A, Structural Determinants Of The Nherf Interaction With
Beta2- Ar And Pdgfr
Length = 91
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Query: 40 WGFRLTGGR-DFGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIG 98
+GF L G + G + + V S AE+ G+ GD +V +NG+ + TH + I
Sbjct: 16 YGFHLHGEKGKLGQYIRL--VEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRA 73
Query: 99 SGNTLTLQIL 108
+ N + L ++
Sbjct: 74 ALNAVRLLVV 83
>pdb|4G69|A Chain A, Structure Of The Human Discs Large 1 Pdz2 - Adenomatous
Polyposis Coli Cytoskeletal Polarity Complex
Length = 100
Score = 30.8 bits (68), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 11/51 (21%), Positives = 31/51 (60%)
Query: 59 VTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQILR 109
+ G + ++G +++GD ++++N C + +TH EA + + + + L++ +
Sbjct: 47 IEGGAAHKDGKLQIGDKLLAVNNVCLEEVTHEEAVTALKNTSDFVYLKVAK 97
>pdb|3RL8|A Chain A, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
pdb|3RL8|B Chain B, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
pdb|3RL8|C Chain C, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
pdb|3RL8|D Chain D, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
pdb|3RL8|E Chain E, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
Length = 105
Score = 30.8 bits (68), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 11/51 (21%), Positives = 31/51 (60%)
Query: 59 VTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQILR 109
+ G + ++G +++GD ++++N C + +TH EA + + + + L++ +
Sbjct: 49 IEGGAAHKDGKLQIGDKLLAVNNVCLEEVTHEEAVTALKNTSDFVYLKVAK 99
>pdb|2OQS|A Chain A, Structure Of The HdlgSAP97 PDZ2 IN COMPLEX WITH HPV-18
Papillomavirus E6 Peptide
Length = 97
Score = 30.8 bits (68), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 11/51 (21%), Positives = 31/51 (60%)
Query: 59 VTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQILR 109
+ G + ++G +++GD ++++N C + +TH EA + + + + L++ +
Sbjct: 37 IEGGAAHKDGKLQIGDKLLAVNNVCLEEVTHEEAVTALKNTSDFVYLKVAK 87
>pdb|2JWE|A Chain A, Solution Structure Of The Second Pdz Domain From Human
Zonula Occludens-1: A Dimeric Form With 3d Domain
Swapping
pdb|2JWE|B Chain B, Solution Structure Of The Second Pdz Domain From Human
Zonula Occludens-1: A Dimeric Form With 3d Domain
Swapping
Length = 88
Score = 30.8 bits (68), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 38/73 (52%), Gaps = 7/73 (9%)
Query: 38 EAWGFRLTGGRDFGTPLTVLRVTGTSVA-EEGGMEVGDMIVSINGQCTQAMTHVEAQQHI 96
E +G RL + + V ++ S+A +G ++ GD+++ ING T+ M+ +A+ I
Sbjct: 12 EEYGLRL------ASHIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLI 65
Query: 97 IGSGNTLTLQILR 109
S L + + R
Sbjct: 66 ERSKGKLKMVVQR 78
>pdb|1U39|A Chain A, Auto-Inhibition Mechanism Of X11sMINTS FAMILY SCAFFOLD
Proteins Revealed By The Closed Conformation Of The
Tandem Pdz Domains
Length = 80
Score = 30.8 bits (68), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 64 VAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGSG 100
+AE GG+ VG I+ INGQ A H E HI+ +
Sbjct: 34 IAERGGVRVGHRIIEINGQSVVATPH-EKIVHILSNA 69
>pdb|1UEP|A Chain A, Solution Structure Of The Third Pdz Domain Of Human
Atrophin-1 Interacting Protein 1 (Kiaa0705 Protein)
Length = 103
Score = 30.8 bits (68), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 39 AWGFRLTGGRDFGTPLTVLRVTGTSVAE-EGGMEVGDMIVSINGQCTQAMTH 89
+GFR+ GG + G P+ + V A+ +G + GD +V ++G TH
Sbjct: 21 GFGFRILGGDEPGQPILIGAVIAMGSADRDGRLHPGDELVYVDGIPVAGKTH 72
>pdb|2RCZ|A Chain A, Structure Of The Second Pdz Domain Of Zo-1
pdb|2RCZ|B Chain B, Structure Of The Second Pdz Domain Of Zo-1
Length = 81
Score = 30.8 bits (68), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 38/73 (52%), Gaps = 7/73 (9%)
Query: 38 EAWGFRLTGGRDFGTPLTVLRVTGTSVA-EEGGMEVGDMIVSINGQCTQAMTHVEAQQHI 96
E +G RL + + V ++ S+A +G ++ GD+++ ING T+ M+ +A+ I
Sbjct: 13 EEYGLRL------ASHIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLI 66
Query: 97 IGSGNTLTLQILR 109
S L + + R
Sbjct: 67 ERSKGKLKMVVQR 79
>pdb|1Q3O|A Chain A, Crystal Structure Of The Shank Pdz-ligand Complex Reveals
A Class I Pdz Interaction And A Novel Pdz-pdz
Dimerization
pdb|1Q3O|B Chain B, Crystal Structure Of The Shank Pdz-ligand Complex Reveals
A Class I Pdz Interaction And A Novel Pdz-pdz
Dimerization
pdb|1Q3P|A Chain A, Crystal Structure Of The Shank Pdz-Ligand Complex Reveals
A Class I Pdz Interaction And A Novel Pdz-Pdz
Dimerization
pdb|1Q3P|B Chain B, Crystal Structure Of The Shank Pdz-Ligand Complex Reveals
A Class I Pdz Interaction And A Novel Pdz-Pdz
Dimerization
Length = 109
Score = 30.8 bits (68), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 25/45 (55%)
Query: 64 VAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQIL 108
VA G+ +GD ++ +NGQ + H + I GNTL ++++
Sbjct: 57 VAWRAGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVV 101
>pdb|3RL7|B Chain B, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
pdb|3RL7|A Chain A, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
pdb|3RL7|C Chain C, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
pdb|3RL7|D Chain D, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
pdb|3RL7|E Chain E, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
pdb|3RL7|F Chain F, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
Length = 107
Score = 30.4 bits (67), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 39/75 (52%), Gaps = 6/75 (8%)
Query: 41 GFRLTGGRD---FGTPLTVLR---VTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQ 94
GF + GG D G ++ +TG + A++G + V D I+ +N + +TH +A +
Sbjct: 25 GFSIAGGTDNPHIGDDSSIFITKIITGGAAAQDGRLRVNDCILRVNEVDVRDVTHSKAVE 84
Query: 95 HIIGSGNTLTLQILR 109
+ +G+ + L + R
Sbjct: 85 ALKEAGSIVRLYVKR 99
>pdb|3CYY|A Chain A, The Crystal Structure Of Zo-1 Pdz2 In Complex With The
Cx43 Peptide
pdb|3CYY|B Chain B, The Crystal Structure Of Zo-1 Pdz2 In Complex With The
Cx43 Peptide
Length = 92
Score = 30.4 bits (67), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 38/73 (52%), Gaps = 7/73 (9%)
Query: 38 EAWGFRLTGGRDFGTPLTVLRVTGTSVA-EEGGMEVGDMIVSINGQCTQAMTHVEAQQHI 96
E +G RL + + V ++ S+A +G ++ GD+++ ING T+ M+ +A+ I
Sbjct: 15 EEYGLRL------ASHIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLI 68
Query: 97 IGSGNTLTLQILR 109
S L + + R
Sbjct: 69 ERSKGKLKMVVQR 81
>pdb|1U3B|A Chain A, Auto-Inhibition Mechanism Of X11sMINTS FAMILY SCAFFOLD
Proteins Revealed By The Closed Conformation Of The
Tandem Pdz Domains
Length = 185
Score = 30.4 bits (67), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 64 VAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGSG 100
+AE GG+ VG I+ INGQ A H E HI+ +
Sbjct: 124 IAERGGVRVGHRIIEINGQSVVATPH-EKIVHILSNA 159
>pdb|3L4F|D Chain D, Crystal Structure Of Betapix Coiled-Coil Domain And Shank
Pdz Complex
Length = 132
Score = 30.4 bits (67), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 25/45 (55%)
Query: 64 VAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQIL 108
VA G+ +GD ++ +NGQ + H + I GNTL ++++
Sbjct: 77 VAWRAGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVV 121
>pdb|2FCF|A Chain A, The Crystal Structure Of The 7th Pdz Domain Of Mpdz
(Mupp-1)
Length = 103
Score = 30.4 bits (67), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 39/81 (48%), Gaps = 10/81 (12%)
Query: 37 CEAWGFRLTGGRDFGTPLT---VLR-------VTGTSVAEEGGMEVGDMIVSINGQCTQA 86
++ G + GGR G+ L+ V+R + + + G ++ GD IV ++G +
Sbjct: 15 SKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRD 74
Query: 87 MTHVEAQQHIIGSGNTLTLQI 107
+H +A + I +GN + +
Sbjct: 75 ASHEQAVEAIRKAGNPVVFMV 95
>pdb|3QJM|A Chain A, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJM|B Chain B, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJN|A Chain A, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJN|B Chain B, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJN|C Chain C, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJN|D Chain D, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJN|E Chain E, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJN|F Chain F, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJN|G Chain G, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJN|H Chain H, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
Length = 115
Score = 30.4 bits (67), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 25/45 (55%)
Query: 64 VAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQIL 108
VA G+ +GD ++ +NGQ + H + I GNTL ++++
Sbjct: 57 VAWRAGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVV 101
>pdb|2VPH|A Chain A, Crystal Structure Of The Human Protein Tyrosine
Phosphatase, Non-Receptor Type 4, Pdz Domain
pdb|2VPH|B Chain B, Crystal Structure Of The Human Protein Tyrosine
Phosphatase, Non-Receptor Type 4, Pdz Domain
Length = 100
Score = 30.4 bits (67), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 40 WGFRLTGGRDFGTPLTVLRVTGTSVAE--EGGMEVGDMIVSINGQCTQAMTH 89
+GF + GG D P+ V RV + A+ + GD +V ING+ TH
Sbjct: 18 FGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTH 69
>pdb|2CS5|A Chain A, Solution Structure Of Pdz Domain Of Protein Tyrosine
Phosphatase, Non-Receptor Type 4
Length = 119
Score = 30.4 bits (67), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 40 WGFRLTGGRDFGTPLTVLRVTGTSVAE--EGGMEVGDMIVSINGQCTQAMTH 89
+GF + GG D P+ V RV + A+ + GD +V ING+ TH
Sbjct: 29 FGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTH 80
>pdb|2DLU|A Chain A, Solution Structure Of The Second Pdz Domain Of Human Inad-
Like Protein
Length = 111
Score = 30.4 bits (67), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 41 GFRLTGGRDFGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGSG 100
GF + GG+ G + + V G +G ++ GD I+ I G Q MT + Q + G
Sbjct: 29 GFGIVGGKTSGVVVRTI-VPGGLADRDGRLQTGDHILKIGGTNVQGMTSEQVAQVLRNCG 87
Query: 101 NTLTLQILR 109
N++ + + R
Sbjct: 88 NSVRMLVAR 96
>pdb|2IWQ|A Chain A, 7th Pdz Domain Of Multiple Pdz Domain Protein Mpdz
Length = 123
Score = 30.4 bits (67), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 39/81 (48%), Gaps = 10/81 (12%)
Query: 37 CEAWGFRLTGGRDFGTPLT---VLR-------VTGTSVAEEGGMEVGDMIVSINGQCTQA 86
++ G + GGR G+ L+ V+R + + + G ++ GD IV ++G +
Sbjct: 35 SKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRD 94
Query: 87 MTHVEAQQHIIGSGNTLTLQI 107
+H +A + I +GN + +
Sbjct: 95 ASHEQAVEAIRKAGNPVVFMV 115
>pdb|2YT8|A Chain A, Solution Structure Of The Pdz Domain Of Amyloid Beta A4
Precursor Protein-Binding Family A Member 3 (Neuron-
Specific X11l2 Protein) (Neuronal Munc18-1-Interacting
Protein 3) (Mint-3) (Adapter Protein X11gamma)
Length = 94
Score = 30.0 bits (66), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 64 VAEEGGMEVGDMIVSINGQCTQAMTH 89
+AE GG+ VG I+ INGQ A H
Sbjct: 39 IAERGGIRVGHRIIEINGQSVVATPH 64
>pdb|2I0L|A Chain A, X-Ray Crystal Structure Of Sap97 Pdz2 Bound To The C-
Terminal Peptide Of Hpv18 E6.
pdb|2I0L|B Chain B, X-Ray Crystal Structure Of Sap97 Pdz2 Bound To The C-
Terminal Peptide Of Hpv18 E6
Length = 84
Score = 30.0 bits (66), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 10/34 (29%), Positives = 23/34 (67%)
Query: 59 VTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEA 92
+ G + ++G +++GD ++++N C + +TH EA
Sbjct: 36 IEGGAAHKDGKLQIGDKLLAVNSVCLEEVTHEEA 69
>pdb|3NFK|A Chain A, Crystal Structure Of The Ptpn4 Pdz Domain Complexed With
The C- Terminus Of A Rabies Virus G Protein
pdb|3NFK|B Chain B, Crystal Structure Of The Ptpn4 Pdz Domain Complexed With
The C- Terminus Of A Rabies Virus G Protein
pdb|3NFL|A Chain A, Crystal Structure Of The Ptpn4 Pdz Domain Complexed With
The C- Terminus Of The Glun2a Nmda Receptor Subunit
pdb|3NFL|B Chain B, Crystal Structure Of The Ptpn4 Pdz Domain Complexed With
The C- Terminus Of The Glun2a Nmda Receptor Subunit
pdb|3NFL|C Chain C, Crystal Structure Of The Ptpn4 Pdz Domain Complexed With
The C- Terminus Of The Glun2a Nmda Receptor Subunit
pdb|3NFL|D Chain D, Crystal Structure Of The Ptpn4 Pdz Domain Complexed With
The C- Terminus Of The Glun2a Nmda Receptor Subunit
Length = 107
Score = 30.0 bits (66), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 40 WGFRLTGGRDFGTPLTVLRVTGTSVAE--EGGMEVGDMIVSINGQCTQAMTH 89
+GF + GG D P+ V RV + A+ + GD +V ING+ TH
Sbjct: 31 FGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTH 82
>pdb|2IWN|A Chain A, 3rd Pdz Domain Of Multiple Pdz Domain Protein Mpdz (Casp
Target)
Length = 97
Score = 30.0 bits (66), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 31/48 (64%)
Query: 62 TSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQILR 109
++V +G +++GD I++++G Q T+ +A + + +G T+ L ++R
Sbjct: 44 SAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMR 91
>pdb|1Y7N|A Chain A, Solution Structure Of The Second Pdz Domain Of The Human
Neuronal Adaptor X11alpha
Length = 90
Score = 30.0 bits (66), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 64 VAEEGGMEVGDMIVSINGQCTQAMTH 89
+AE GG+ VG I+ INGQ A H
Sbjct: 43 IAERGGVRVGHRIIEINGQSVVATPH 68
>pdb|2HE4|A Chain A, The Crystal Structure Of The Second Pdz Domain Of Human
Nherf-2 (Slc9a3r2) Interacting With A Mode 1 Pdz
Binding Motif
Length = 90
Score = 30.0 bits (66), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Query: 38 EAWGFRLTGGRDFGTPLTVLR-VTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVE 91
+ +GF L D P +R V S A G+ D ++ +NGQ + + H E
Sbjct: 15 QGYGFNLHS--DKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAE 67
>pdb|3JXT|A Chain A, Crystal Structure Of The Third Pdz Domain Of Sap-102 In
Complex With A Fluorogenic Peptide-Based Ligand
pdb|3JXT|B Chain B, Crystal Structure Of The Third Pdz Domain Of Sap-102 In
Complex With A Fluorogenic Peptide-Based Ligand
Length = 104
Score = 29.6 bits (65), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 30/65 (46%)
Query: 41 GFRLTGGRDFGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGSG 100
GF + GG D + G G + GD I+S+NG + TH +A + +G
Sbjct: 26 GFNIVGGEDGEGIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATHEQAAAALKRAG 85
Query: 101 NTLTL 105
++T+
Sbjct: 86 QSVTI 90
>pdb|3TSW|A Chain A, Crystal Structure Of The Pdz3-Sh3-Guk Core Module Of
Human Zo-1
pdb|3TSW|C Chain C, Crystal Structure Of The Pdz3-Sh3-Guk Core Module Of
Human Zo-1
pdb|3TSW|D Chain D, Crystal Structure Of The Pdz3-Sh3-Guk Core Module Of
Human Zo-1
pdb|3TSZ|A Chain A, Crystal Structure Of Pdz3-Sh3-Guk Core Module From Human
Zo-1 In Complex With 12mer Peptide From Human Jam-A
Cytoplasmic Tail
Length = 391
Score = 29.6 bits (65), Expect = 0.43, Method: Composition-based stats.
Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 41 GFRLTGGRDFGTPLTVLRVTGTSVAEEGGMEVGDMIVSIN 80
G RL GG D G + V V S A + G+E GD I+ +N
Sbjct: 22 GLRLAGGNDVG--IFVAGVLEDSPAAKEGLEEGDQILRVN 59
>pdb|3SHW|A Chain A, Crystal Structure Of Zo-1 Pdz3-Sh3-Guk Supramodule
Complex With Connexin-45 Peptide
Length = 468
Score = 29.6 bits (65), Expect = 0.43, Method: Composition-based stats.
Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 41 GFRLTGGRDFGTPLTVLRVTGTSVAEEGGMEVGDMIVSIN 80
G RL GG D G + V V S A + G+E GD I+ +N
Sbjct: 14 GLRLAGGNDVG--IFVAGVLEDSPAAKEGLEEGDQILRVN 51
>pdb|1P1D|A Chain A, Structural Insights Into The Inter-Domain Chaperoning Of
Tandem Pdz Domains In Glutamate Receptor Interacting
Proteins
Length = 196
Score = 29.6 bits (65), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 7/75 (9%)
Query: 40 WGFRLTGG----RDFGTPLTVLRVTGTSVAEE-GGMEVGDMIVSINGQCTQAMTHVEAQQ 94
+G +L G +P + + S AE G +++GD +++ING T+ T EA Q
Sbjct: 20 FGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQ 79
Query: 95 HIIGSGNT--LTLQI 107
+ S T +TL+I
Sbjct: 80 LLRDSSITSKVTLEI 94
>pdb|1N7E|A Chain A, Crystal Structure Of The Sixth Pdz Domain Of Grip1
pdb|1N7F|A Chain A, Crystal Structure Of The Sixth Pdz Domain Of Grip1 In
Complex With Liprin C-Terminal Peptide
pdb|1N7F|B Chain B, Crystal Structure Of The Sixth Pdz Domain Of Grip1 In
Complex With Liprin C-Terminal Peptide
Length = 97
Score = 29.6 bits (65), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 39 AWGFRLTGGRDFGTPLTVLRVTGTSVAEE-GGMEVGDMIVSINGQCTQAMTHVEAQQHII 97
G ++G + P+ + +T +AE G + +GD I++IN + EA +
Sbjct: 17 PLGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQ 76
Query: 98 GSGNTLTLQILR 109
+G T+TL+I +
Sbjct: 77 MAGETVTLKIKK 88
>pdb|1UIT|A Chain A, Solution Structure Of Rsgi Ruh-006, The Third Pdz Domain
Of Hdlg5 (Kiaa0583) Protein [homo Sapiens]
Length = 117
Score = 29.6 bits (65), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 37 CEAWGFRLTGGRDFGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQ 93
E G + G G + V +VT S+A + G+E GD ++ NG ++ T +A+
Sbjct: 29 SEPLGISIVSGEKGG--IYVSKVTVGSIAHQAGLEYGDQLLEFNGINLRSATEQQAR 83
>pdb|3DJ3|A Chain A, Crystal Structure Of C-Terminal Truncated Tip-1 (6-113)
pdb|3DJ3|B Chain B, Crystal Structure Of C-Terminal Truncated Tip-1 (6-113)
pdb|3DJ3|C Chain C, Crystal Structure Of C-Terminal Truncated Tip-1 (6-113)
pdb|3DJ3|D Chain D, Crystal Structure Of C-Terminal Truncated Tip-1 (6-113)
Length = 113
Score = 29.6 bits (65), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 26/43 (60%)
Query: 54 LTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHI 96
+ V RV+ AE G+++GD I+ +NG +TH +A++ +
Sbjct: 56 IYVTRVSEGGPAEIAGLQIGDKIMQVNGWDMTMVTHDQARKRL 98
>pdb|4E3B|A Chain A, Crystal Structure Of Tax-Interacting Protein-1 (Tip-1)
Pdz Domain Bound To Ical36-L (Ansrwptsil) Peptide
pdb|4E3B|B Chain B, Crystal Structure Of Tax-Interacting Protein-1 (Tip-1)
Pdz Domain Bound To Ical36-L (Ansrwptsil) Peptide
Length = 102
Score = 29.3 bits (64), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 26/43 (60%)
Query: 54 LTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHI 96
+ V RV+ AE G+++GD I+ +NG +TH +A++ +
Sbjct: 45 IYVTRVSEGGPAEIAGLQIGDKIMQVNGWDMTMVTHDQARKRL 87
>pdb|3SFJ|A Chain A, Crystal Structure Of Tax-Interacting Protein-1 (Tip-1)
Pdz Domain Bound To Ical36 Inhibitor Peptide
pdb|3SFJ|C Chain C, Crystal Structure Of Tax-Interacting Protein-1 (Tip-1)
Pdz Domain Bound To Ical36 Inhibitor Peptide
Length = 104
Score = 29.3 bits (64), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 26/43 (60%)
Query: 54 LTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHI 96
+ V RV+ AE G+++GD I+ +NG +TH +A++ +
Sbjct: 47 IYVTRVSEGGPAEIAGLQIGDKIMQVNGWDMTMVTHDQARKRL 89
>pdb|1UM7|A Chain A, Solution Structure Of The Third Pdz Domain Of Synapse-
Associated Protein 102
Length = 113
Score = 29.3 bits (64), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 30/65 (46%)
Query: 41 GFRLTGGRDFGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGSG 100
GF + GG D + G G + GD I+S+NG + TH +A + +G
Sbjct: 29 GFNIVGGEDGEGIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATHEQAAAALKRAG 88
Query: 101 NTLTL 105
++T+
Sbjct: 89 QSVTI 93
>pdb|1TP3|A Chain A, Pdz3 Domain Of Psd-95 Protein Complexed With Kketpv
Peptide Ligand
pdb|1TP5|A Chain A, Crystal Structure Of Pdz3 Domain Of Psd-95 Protein
Complexed With A Peptide Ligand Kketwv
pdb|1TQ3|A Chain A, Higher Resolution Crystal Structure Of The Third Pdz
Domain Of Post Synaptic Psd-95 Protein
Length = 119
Score = 29.3 bits (64), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 30/65 (46%)
Query: 41 GFRLTGGRDFGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGSG 100
GF + GG D + G G + GD I+S+NG + +H +A + +G
Sbjct: 28 GFNIVGGEDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAG 87
Query: 101 NTLTL 105
T+T+
Sbjct: 88 QTVTI 92
>pdb|2OCS|A Chain A, The Crystal Structure Of The First Pdz Domain Of Human
Nherf-2 (slc9a3r2)
Length = 88
Score = 29.3 bits (64), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Query: 38 EAWGFRLTGGRDFGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHI 96
+ +GF L G + + RV S AE + GD +V +NG + TH + Q I
Sbjct: 12 QGYGFHLHGEKGRRGQF-IRRVEPGSPAEAAALRAGDRLVEVNGVNVEGETHHQVVQRI 69
>pdb|2KG2|A Chain A, Solution Structure Of A Pdz Protein
Length = 124
Score = 29.3 bits (64), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 26/43 (60%)
Query: 54 LTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHI 96
+ V RV+ AE G+++GD I+ +NG +TH +A++ +
Sbjct: 55 IYVTRVSEGGPAEIAGLQIGDKIMQVNGWDMTMVTHDQARKRL 97
>pdb|3GJ9|A Chain A, Crystal Structure Of Tip-1 In Complex With C-Terminal Of
Kir2.3
pdb|3GJ9|B Chain B, Crystal Structure Of Tip-1 In Complex With C-Terminal Of
Kir2.3
pdb|2L4S|A Chain A, Promiscuous Binding At The Crossroads Of Numerous Cancer
Pathways: Insight From The Binding Of Gip With
Glutaminase L
pdb|2L4T|A Chain A, GipGLUTAMINASE L PEPTIDE COMPLEX
Length = 124
Score = 29.3 bits (64), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 26/43 (60%)
Query: 54 LTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHI 96
+ V RV+ AE G+++GD I+ +NG +TH +A++ +
Sbjct: 55 IYVTRVSEGGPAEIAGLQIGDKIMQVNGWDMTMVTHDQARKRL 97
>pdb|3DIW|A Chain A, C-Terminal Beta-Catenin Bound Tip-1 Structure
pdb|3DIW|B Chain B, C-Terminal Beta-Catenin Bound Tip-1 Structure
pdb|3DJ1|A Chain A, Crystal Structure Of Tip-1 Wild Type
pdb|3DJ1|B Chain B, Crystal Structure Of Tip-1 Wild Type
Length = 124
Score = 29.3 bits (64), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 26/43 (60%)
Query: 54 LTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHI 96
+ V RV+ AE G+++GD I+ +NG +TH +A++ +
Sbjct: 55 IYVTRVSEGGPAEIAGLQIGDKIMQVNGWDMTMVTHDQARKRL 97
>pdb|2OMJ|A Chain A, Solution Structure Of Larg Pdz Domain
pdb|2OS6|A Chain A, Solution Structure Of Larg Pdz Domain In Complex With C-
Terminal Octa-Peptide Of Plexin B1
Length = 89
Score = 29.3 bits (64), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Query: 41 GFRLTGGRDFGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGSG 100
GF LT D P+ V V A G++ GD I+ +NG H+E + +I SG
Sbjct: 19 GFGLTVSGD--NPVFVQSVKEDGAAMRAGVQTGDRIIKVNGTLVTHSNHLEVVK-LIKSG 75
Query: 101 NTLTLQI 107
+ + L +
Sbjct: 76 SYVALTV 82
>pdb|1FX8|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(Glpf) With Substrate Glycerol
pdb|1LDA|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(glpf) Without Substrate Glycerol
pdb|1LDI|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(Glpf) Without Substrate Glycerol
Length = 281
Score = 29.3 bits (64), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 26/58 (44%)
Query: 41 GFRLTGGRDFGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIG 98
GF + RDFG + +VA GG ++ +V + G A+ A + +IG
Sbjct: 199 GFAMNPARDFGPKVFAWLAGWGNVAFTGGRDIPYFLVPLFGPIVGAIVGAFAYRKLIG 256
>pdb|1P1E|A Chain A, Structural Insights Into The Inter-Domain Chaperoning Of
Tandem Pdz Domains In Glutamate Receptor Interacting
Proteins
Length = 101
Score = 29.3 bits (64), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 7/75 (9%)
Query: 40 WGFRLTGG----RDFGTPLTVLRVTGTSVAEE-GGMEVGDMIVSINGQCTQAMTHVEAQQ 94
+G +L G +P + + S AE G +++GD +++ING T+ T EA Q
Sbjct: 20 FGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQ 79
Query: 95 HIIGSGNT--LTLQI 107
+ S T +TL+I
Sbjct: 80 LLRDSSITSKVTLEI 94
>pdb|3BPU|A Chain A, Crystal Structure Of The 3rd Pdz Domain Of Human Membrane
Associated Guanylate Kinase, C677s And C709s Double
Mutant
Length = 88
Score = 29.3 bits (64), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 27/43 (62%), Gaps = 2/43 (4%)
Query: 69 GMEVGDMIVSINGQCTQAMTHVEAQQHIIGS--GNTLTLQILR 109
G++ GD+IV +N + QA+TH + ++ S G+ +TL + R
Sbjct: 42 GLKEGDLIVEVNKKNVQALTHNQVVDMLVESPKGSEVTLLVQR 84
>pdb|1V5Q|A Chain A, Solution Structure Of The Pdz Domain From Mouse Glutamate
Receptor Interacting Protein 1a-L (Grip1) Homolog
Length = 122
Score = 29.3 bits (64), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 7/75 (9%)
Query: 40 WGFRLTGG----RDFGTPLTVLRVTGTSVAEE-GGMEVGDMIVSINGQCTQAMTHVEAQQ 94
+G +L G +P + + S AE G +++GD +++ING T+ T EA Q
Sbjct: 29 FGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQ 88
Query: 95 HIIGSGNT--LTLQI 107
+ S T +TL+I
Sbjct: 89 LLRDSSITSKVTLEI 103
>pdb|1BE9|A Chain A, The Third Pdz Domain From The Synaptic Protein Psd-95 In
Complex With A C-Terminal Peptide Derived From Cript.
pdb|1BFE|A Chain A, The Third Pdz Domain From The Synaptic Protein Psd-95
Length = 119
Score = 29.3 bits (64), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 30/65 (46%)
Query: 41 GFRLTGGRDFGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGSG 100
GF + GG D + G G + GD I+S+NG + +H +A + +G
Sbjct: 28 GFNIIGGEDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAG 87
Query: 101 NTLTL 105
T+T+
Sbjct: 88 QTVTI 92
>pdb|2VZ5|A Chain A, Structure Of The Pdz Domain Of Tax1 (Human T-Cell Leukemia
Virus Type I) Binding Protein 3
Length = 139
Score = 29.3 bits (64), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 26/43 (60%)
Query: 54 LTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHI 96
+ V RV+ AE G+++GD I+ +NG +TH +A++ +
Sbjct: 66 IYVTRVSEGGPAEIAGLQIGDKIMQVNGWDMTMVTHDQARKRL 108
>pdb|3ID3|A Chain A, Crystal Structure Of Rsep Pdz2 I304a Domain
pdb|3ID3|B Chain B, Crystal Structure Of Rsep Pdz2 I304a Domain
Length = 89
Score = 28.9 bits (63), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 59 VTGTSVAEEGGMEVGDMIVSINGQ-CTQAMTHVEAQQHIIGSGNTLTLQILR 109
V S A + G++ GD IV ++GQ TQ +T V + G +L L+I R
Sbjct: 9 VQPNSAASKAGLQAGDRIVKVDGQPLTQWVTFVMLVRD--NPGKSLALEIER 58
>pdb|3ID4|A Chain A, Crystal Structure Of Rsep Pdz2 Domain Fused Gkaspv Peptide
Length = 93
Score = 28.9 bits (63), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 59 VTGTSVAEEGGMEVGDMIVSINGQC-TQAMTHVEAQQHIIGSGNTLTLQILR 109
V S A + G++ GD IV ++GQ TQ +T V + G +L L+I R
Sbjct: 9 VQPNSAASKAGLQAGDRIVKVDGQPLTQWVTFVMLVRD--NPGKSLALEIER 58
>pdb|3ID2|A Chain A, Crystal Structure Of Rsep Pdz2 Domain
pdb|3ID2|B Chain B, Crystal Structure Of Rsep Pdz2 Domain
Length = 90
Score = 28.9 bits (63), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 59 VTGTSVAEEGGMEVGDMIVSINGQ-CTQAMTHVEAQQHIIGSGNTLTLQILR 109
V S A + G++ GD IV ++GQ TQ +T V + G +L L+I R
Sbjct: 10 VQPNSAASKAGLQAGDRIVKVDGQPLTQWVTFVMLVRD--NPGKSLALEIER 59
>pdb|1WI2|A Chain A, Solution Structure Of The Pdz Domain From Riken Cdna
2700099c19
Length = 104
Score = 28.5 bits (62), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 27/52 (51%)
Query: 41 GFRLTGGRDFGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEA 92
GF + GG+ + + +V S A G++ GD ++++N Q + H +A
Sbjct: 30 GFNIRGGKASQLGIFISKVIPDSDAHRAGLQEGDQVLAVNDVDFQDIEHSKA 81
>pdb|3TSV|A Chain A, Crystal Structure Of The Third Pdz Domain Of The Human
Zo-1 Maguk Protein
Length = 124
Score = 28.5 bits (62), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 38 EAWGFRLTGGRDFGTPLTVLRVTGTSVAEEGGMEVGDMIVSIN 80
++ G RL GG D G + V V S A + G+E GD I+ +N
Sbjct: 39 DSVGLRLAGGNDVG--IFVAGVLEDSPAAKEGLEEGDQILRVN 79
>pdb|3TSW|B Chain B, Crystal Structure Of The Pdz3-Sh3-Guk Core Module Of
Human Zo-1
Length = 194
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 41 GFRLTGGRDFGTPLTVLRVTGTSVAEEGGMEVGDMIVSIN 80
G RL GG D G + V V S A + G+E GD I+ +N
Sbjct: 15 GLRLAGGNDVG--IFVAGVLEDSPAAKEGLEEGDQILRVN 52
>pdb|3SHU|A Chain A, Crystal Structure Of Zo-1 Pdz3
pdb|3SHU|B Chain B, Crystal Structure Of Zo-1 Pdz3
Length = 95
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 38 EAWGFRLTGGRDFGTPLTVLRVTGTSVAEEGGMEVGDMIVSIN 80
++ G RL GG D G + V V S A + G+E GD I+ +N
Sbjct: 14 DSVGLRLAGGNDVG--IFVAGVLEDSPAAKEGLEEGDQILRVN 54
>pdb|3PV3|A Chain A, Structure Of Legionella Fallonii Degq (S193a Variant)
pdb|3PV3|B Chain B, Structure Of Legionella Fallonii Degq (S193a Variant)
pdb|3PV3|C Chain C, Structure Of Legionella Fallonii Degq (S193a Variant)
pdb|3PV3|D Chain D, Structure Of Legionella Fallonii Degq (S193a Variant)
Length = 451
Score = 28.1 bits (61), Expect = 1.4, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 49 DFGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQIL 108
DF L V +V S AE G++ GD+I IN T V+ ++ G+T+ + +
Sbjct: 280 DFQGAL-VSQVNPNSPAELAGLKAGDIITQINDTKITQATQVKTTISLLRVGSTVKIIVE 338
Query: 109 R 109
R
Sbjct: 339 R 339
>pdb|3PV2|A Chain A, Structure Of Legionella Fallonii Degq (Wt)
pdb|3PV2|B Chain B, Structure Of Legionella Fallonii Degq (Wt)
pdb|3PV2|C Chain C, Structure Of Legionella Fallonii Degq (Wt)
pdb|3PV2|D Chain D, Structure Of Legionella Fallonii Degq (Wt)
Length = 451
Score = 28.1 bits (61), Expect = 1.4, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 49 DFGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQIL 108
DF L V +V S AE G++ GD+I IN T V+ ++ G+T+ + +
Sbjct: 280 DFQGAL-VSQVNPNSPAELAGLKAGDIITQINDTKITQATQVKTTISLLRVGSTVKIIVE 338
Query: 109 R 109
R
Sbjct: 339 R 339
>pdb|3PV4|A Chain A, Structure Of Legionella Fallonii Degq (Delta-Pdz2 Variant)
Length = 354
Score = 28.1 bits (61), Expect = 1.4, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 49 DFGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQIL 108
DF L V +V S AE G++ GD+I IN T V+ ++ G+T+ + +
Sbjct: 280 DFQGAL-VSQVNPNSPAELAGLKAGDIITQINDTKITQATQVKTTISLLRVGSTVKIIVE 338
Query: 109 R 109
R
Sbjct: 339 R 339
>pdb|3PV5|A Chain A, Structure Of Legionella Fallonii Degq (N189gP190G VARIANT)
pdb|3PV5|B Chain B, Structure Of Legionella Fallonii Degq (N189gP190G VARIANT)
pdb|3PV5|C Chain C, Structure Of Legionella Fallonii Degq (N189gP190G VARIANT)
pdb|3PV5|D Chain D, Structure Of Legionella Fallonii Degq (N189gP190G VARIANT)
Length = 451
Score = 27.7 bits (60), Expect = 1.5, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 49 DFGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQIL 108
DF L V +V S AE G++ GD+I IN T V+ ++ G+T+ + +
Sbjct: 280 DFQGAL-VSQVNPNSPAELAGLKAGDIITQINDTKITQATQVKTTISLLRVGSTVKIIVE 338
Query: 109 R 109
R
Sbjct: 339 R 339
>pdb|2X7Z|A Chain A, Crystal Structure Of The Sap97 Pdz2 I342w C378a Mutant
Protein Domain
Length = 99
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 10/51 (19%), Positives = 30/51 (58%)
Query: 59 VTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQILR 109
+ G + ++G +++GD ++++N + +TH EA + + + + L++ +
Sbjct: 46 IEGGAAHKDGKLQIGDKLLAVNNVALEEVTHEEAVTALKNTSDFVYLKVAK 96
>pdb|2JIL|A Chain A, Crystal Structure Of 2nd Pdz Domain Of Glutamate
Receptor Interacting Protein-1 (Grip1)
pdb|2JIL|B Chain B, Crystal Structure Of 2nd Pdz Domain Of Glutamate
Receptor Interacting Protein-1 (Grip1)
Length = 97
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
Query: 40 WGFRLTGG----RDFGTPLTVLRV-TGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEA 92
+GF + GG R+ P+ + V G EG ++ GD ++S++G TH EA
Sbjct: 16 FGFVIRGGAHDDRNKSRPVVITSVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEA 73
>pdb|1UJU|A Chain A, Solution Structure Of The Fourth Pdz Domain Of Human
Scribble (Kiaa0147 Protein)
Length = 111
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 56 VLRVTGTSVA-EEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQI 107
+ +V+ T A +G + VG ++ +N Q +TH EA Q + G+TLT+ +
Sbjct: 48 ISKVSPTGAAGRDGRLRVGLRLLEVNQQSLLGLTHGEAVQLLRSVGDTLTVLV 100
>pdb|2PKU|A Chain A, Solution Structure Of Pick1 Pdz In Complex With The
Carboxyl Tail Peptide Of Glur2
Length = 87
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 41 GFRLTGGRDFGTPLTVLRV-TGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHI 96
G + GG + L +++V T A +G + GD I +NG+ + T VE + I
Sbjct: 17 GISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMI 73
>pdb|2ZPM|A Chain A, Crystal Structure Analysis Of Pdz Domain B
Length = 91
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 58 RVTGTSVAEEGGMEVGDMIVSINGQ-CTQAMTHVEAQQHIIGSGNTLTLQILR 109
V S A G++ GD IV ++GQ TQ +T V + G +L L+I R
Sbjct: 10 NVQPNSAASXAGLQAGDRIVXVDGQPLTQWVTFVXLVRD--NPGXSLALEIER 60
>pdb|2AWX|A Chain A, Synapse Associated Protein 97 Pdz2 Domain Variant C378s
pdb|2AWX|B Chain B, Synapse Associated Protein 97 Pdz2 Domain Variant C378s
Length = 105
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 10/51 (19%), Positives = 30/51 (58%)
Query: 59 VTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQILR 109
+ G + ++G +++GD ++++N + +TH EA + + + + L++ +
Sbjct: 41 IEGGAAHKDGKLQIGDKLLAVNSVSLEEVTHEEAVTALKNTSDFVYLKVAK 91
>pdb|2E7K|A Chain A, Solution Structure Of The Pdz Domain From Human Maguk
P55 Subfamily Member 2
Length = 91
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 6/42 (14%)
Query: 42 FRLTGGRDFGTPLTVLRVT-GTSVAEEGGMEVGDMIVSINGQ 82
FR+ GG L + R+ G VA++G + VGD+I +NGQ
Sbjct: 24 FRVEGGE-----LVIARILHGGMVAQQGLLHVGDIIKEVNGQ 60
>pdb|2D92|A Chain A, Solution Structure Of The Fifth Pdz Domain Of Inad-Like
Protein
Length = 108
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 11/66 (16%)
Query: 37 CEAWGFRLTGGRDFGTPLTVLR-------VTGTSVAE-EGGMEVGDMIVSINGQCTQAMT 88
C+ GF + D+ PL R + VAE GG+ GD +VS+N C +
Sbjct: 25 CKGLGFSIL---DYQDPLDPTRSVIVIRSLVADGVAERSGGLLPGDRLVSVNEYCLDNTS 81
Query: 89 HVEAQQ 94
EA +
Sbjct: 82 LAEAVE 87
>pdb|2GZV|A Chain A, The Cystal Structure Of The Pdz Domain Of Human Pick1
(Casp Target)
Length = 114
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 41 GFRLTGGRDFGTPLTVLRV-TGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHI 96
G + GG + L +++V T A +G + GD I +NG+ + T VE + I
Sbjct: 39 GISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMI 95
>pdb|4AMH|A Chain A, Influence Of Circular Permutation On The Folding Pathway
Of A Pdz Domain
pdb|4AMH|B Chain B, Influence Of Circular Permutation On The Folding Pathway
Of A Pdz Domain
Length = 106
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 10/51 (19%), Positives = 30/51 (58%)
Query: 59 VTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQILR 109
+ G + ++G +++GD ++++N + +TH EA + + + + L++ +
Sbjct: 40 IEGGAAHKDGKLQIGDKLLAVNNVALEEVTHEEAVTALKNTSDFVYLKVAK 90
>pdb|2DLS|A Chain A, Solution Structure Of The Pdz Domain Of Human Rho Guanine
Nucleotide Exchange Factor 11
Length = 93
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 5/71 (7%)
Query: 38 EAWGFRLTGGRDFGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHII 97
+GF ++G R + V V A + G++ GD I+ +NG +H+E + +I
Sbjct: 19 HGFGFTVSGDR----IVLVQSVRPGGAAMKAGVKEGDRIIKVNGTMVTNSSHLEVVK-LI 73
Query: 98 GSGNTLTLQIL 108
SG + L +L
Sbjct: 74 KSGAYVALTLL 84
>pdb|3HPM|A Chain A, Oxidized Dimeric Pick1 Pdz C46g Mutant In Complex With
The C Tail Peptide Of Glur2
pdb|3HPM|B Chain B, Oxidized Dimeric Pick1 Pdz C46g Mutant In Complex With
The C Tail Peptide Of Glur2
Length = 111
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 41 GFRLTGGRDFGTPLTVLRV-TGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHI 96
G + GG + L +++V T A +G + GD I +NG+ + T VE + I
Sbjct: 20 GISIGGGAQYCPGLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMI 76
>pdb|2QT5|A Chain A, Crystal Structure Of Grip1 Pdz12 In Complex With The Fras1
Peptide
pdb|2QT5|B Chain B, Crystal Structure Of Grip1 Pdz12 In Complex With The Fras1
Peptide
Length = 200
Score = 26.9 bits (58), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 5/73 (6%)
Query: 40 WGFRLTGG----RDFGTPLTVLRV-TGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQ 94
+GF + GG R+ P+ + V G EG ++ GD ++S++G TH EA
Sbjct: 119 FGFVIRGGAHDDRNKSRPVVITCVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMS 178
Query: 95 HIIGSGNTLTLQI 107
+ G TL I
Sbjct: 179 ILKQCGQEATLLI 191
>pdb|2DM8|A Chain A, Solution Structure Of The Eighth Pdz Domain Of Human
Inad- Like Protein
Length = 116
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 6/56 (10%)
Query: 41 GFRLTGGRDFGTPLTVLRVTGT----SVAEEGGMEVGDMIVSINGQCTQAMTHVEA 92
G + GG+D TPL + + + A +G + GD I+ +NG + +H EA
Sbjct: 31 GLSIVGGKD--TPLNAIVIHEVYEEGAAARDGRLWAGDQILEVNGVDLRNSSHEEA 84
>pdb|3HPK|A Chain A, Oxidized Dimeric Pick1 Pdz In Complex With The Carboxyl
Tail Of Glur2
pdb|3HPK|B Chain B, Oxidized Dimeric Pick1 Pdz In Complex With The Carboxyl
Tail Of Glur2
Length = 125
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 41 GFRLTGGRDFGTPLTVLRV-TGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHI 96
G + GG + L +++V T A +G + GD I +NG+ + T VE + I
Sbjct: 34 GISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMI 90
>pdb|3QW4|B Chain B, Structure Of Leishmania Donovani Ump Synthase
pdb|3QW4|C Chain C, Structure Of Leishmania Donovani Ump Synthase
Length = 453
Score = 26.9 bits (58), Expect = 3.0, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 24/48 (50%)
Query: 53 PLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGSG 100
P ++ GT A EG + GD +V I+ + T VEA + + +G
Sbjct: 345 PRREAKIYGTKAAIEGEYKKGDRVVIIDDLVSTGETKVEAIEKLRSAG 392
>pdb|2AWW|A Chain A, Synapse Associated Protein 97 Pdz2 Domain Variant C378g
With C-Terminal Glur-A Peptide
pdb|2AWW|B Chain B, Synapse Associated Protein 97 Pdz2 Domain Variant C378g
With C-Terminal Glur-A Peptide
Length = 105
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 11/51 (21%), Positives = 30/51 (58%)
Query: 59 VTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQILR 109
V G + ++G +++GD ++++N + +TH EA + + + + L++ +
Sbjct: 41 VEGGAAHKDGKLQIGDKLLAVNSVGLEEVTHEEAVTALKNTSDFVYLKVAK 91
>pdb|2P3W|A Chain A, Crystal Structure Of The Htra3 Pdz Domain Bound To A
Phage-Derived Ligand (Fgrwv)
pdb|2P3W|B Chain B, Crystal Structure Of The Htra3 Pdz Domain Bound To A
Phage-Derived Ligand (Fgrwv)
Length = 112
Score = 26.9 bits (58), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
Query: 54 LTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQILR 109
+ V V S ++ GG++ GD+IV +NG+ + E Q+ ++ + + L L++ R
Sbjct: 37 IYVQEVAPNSPSQRGGIQDGDIIVKVNGRPL--VDSSELQEAVL-TESPLLLEVRR 89
>pdb|3K82|A Chain A, Crystal Structure Of The Third Pdz Domain Of Psd-95
Length = 98
Score = 26.6 bits (57), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 29/65 (44%)
Query: 41 GFRLTGGRDFGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGSG 100
GF + GG + G G + GD I+S+NG + +H +A + +G
Sbjct: 20 GFNIVGGEXGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAG 79
Query: 101 NTLTL 105
T+T+
Sbjct: 80 QTVTI 84
>pdb|2AWU|A Chain A, Synapse Associated Protein 97 Pdz2 Domain Variant C378g
pdb|2AWU|B Chain B, Synapse Associated Protein 97 Pdz2 Domain Variant C378g
Length = 105
Score = 26.6 bits (57), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 10/51 (19%), Positives = 30/51 (58%)
Query: 59 VTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQILR 109
+ G + ++G +++GD ++++N + +TH EA + + + + L++ +
Sbjct: 41 IEGGAAHKDGKLQIGDKLLAVNSVGLEEVTHEEAVTALKNTSDFVYLKVAK 91
>pdb|3I4W|A Chain A, Crystal Structure Of The Third Pdz Domain Of Psd-95
pdb|3I4W|B Chain B, Crystal Structure Of The Third Pdz Domain Of Psd-95
pdb|3I4W|C Chain C, Crystal Structure Of The Third Pdz Domain Of Psd-95
pdb|3I4W|D Chain D, Crystal Structure Of The Third Pdz Domain Of Psd-95
Length = 104
Score = 26.6 bits (57), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 29/65 (44%)
Query: 41 GFRLTGGRDFGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGSG 100
GF + GG + G G + GD I+S+NG + +H +A + +G
Sbjct: 25 GFNIVGGEXGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAG 84
Query: 101 NTLTL 105
T+T+
Sbjct: 85 QTVTI 89
>pdb|2FE5|A Chain A, The Crystal Structure Of The Second Pdz Domain Of Human
Dlg3
Length = 94
Score = 26.2 bits (56), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 10/51 (19%), Positives = 29/51 (56%)
Query: 59 VTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQILR 109
+ G + ++G +++GD ++++N Q + H EA + + + + L++ +
Sbjct: 41 IEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLKVAK 91
>pdb|2BYG|A Chain A, 2nd Pdz Domain Of Discs Large Homologue 2
Length = 117
Score = 26.2 bits (56), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 10/34 (29%), Positives = 21/34 (61%)
Query: 59 VTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEA 92
+ G + ++G ++VGD ++ +N + +TH EA
Sbjct: 62 IDGGAAQKDGRLQVGDRLLMVNNYSLEEVTHEEA 95
>pdb|2YUY|A Chain A, Solution Structure Of Pdz Domain Of Rho Gtpase Activating
Protein 21
Length = 126
Score = 25.8 bits (55), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 22/44 (50%)
Query: 65 AEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQIL 108
A E G+ GD I+ +NG+ T+ + I S TL L ++
Sbjct: 74 AFEAGLCTGDRIIKVNGESVIGKTYSQVIALIQNSDTTLELSVM 117
>pdb|4A8A|A Chain A, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|B Chain B, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|C Chain C, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|D Chain D, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|E Chain E, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|F Chain F, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|G Chain G, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|H Chain H, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|I Chain I, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|J Chain J, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|K Chain K, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|L Chain L, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8B|A Chain A, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|B Chain B, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|C Chain C, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|D Chain D, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|E Chain E, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|F Chain F, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|G Chain G, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|H Chain H, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|I Chain I, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|J Chain J, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|K Chain K, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|L Chain L, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8C|A Chain A, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|B Chain B, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|C Chain C, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|D Chain D, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|E Chain E, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|F Chain F, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|G Chain G, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|H Chain H, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|I Chain I, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|J Chain J, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|K Chain K, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|L Chain L, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A9G|A Chain A, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|B Chain B, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|C Chain C, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|D Chain D, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|E Chain E, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|F Chain F, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|G Chain G, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|H Chain H, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|I Chain I, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|J Chain J, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|K Chain K, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|L Chain L, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|M Chain M, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|N Chain N, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|O Chain O, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|P Chain P, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|Q Chain Q, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|R Chain R, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|S Chain S, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|T Chain T, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|U Chain U, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|V Chain V, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|W Chain W, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|Y Chain Y, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
Length = 436
Score = 25.8 bits (55), Expect = 6.5, Method: Composition-based stats.
Identities = 14/54 (25%), Positives = 27/54 (50%)
Query: 56 VLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQILR 109
V V S + + G++ GD+I S+NG+ + + ++ G + L +LR
Sbjct: 267 VSEVLPGSGSAKAGVKAGDIITSLNGKPLNSFAELRSRIATTEPGTKVKLGLLR 320
>pdb|3STJ|A Chain A, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|B Chain B, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|C Chain C, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|D Chain D, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|E Chain E, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|F Chain F, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|G Chain G, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|H Chain H, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|I Chain I, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|J Chain J, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|K Chain K, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|L Chain L, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
Length = 345
Score = 25.8 bits (55), Expect = 6.9, Method: Composition-based stats.
Identities = 14/54 (25%), Positives = 27/54 (50%)
Query: 56 VLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQILR 109
V V S + + G++ GD+I S+NG+ + + ++ G + L +LR
Sbjct: 267 VSEVLPGSGSAKAGVKAGDIITSLNGKPLNSFAELRSRIATTEPGTKVKLGLLR 320
>pdb|2O2T|A Chain A, The Crystal Structure Of The 1st Pdz Domain Of Mpdz
pdb|2O2T|B Chain B, The Crystal Structure Of The 1st Pdz Domain Of Mpdz
Length = 117
Score = 25.8 bits (55), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 61 GTSVAEEGGMEVGDMIVSINGQC-TQAMTHVEAQQHIIGSGNTLTLQILR 109
G+ +G ++ D I++INGQ Q +TH +A + + +T+ L I R
Sbjct: 59 GSVAHRDGRLKETDQILAINGQALDQTITHQQAISILQKAKDTVQLVIAR 108
>pdb|3QFK|A Chain A, 2.05 Angstrom Crystal Structure Of Putative
5'-Nucleotidase From Staphylococcus Aureus In Complex
With Alpha-Ketoglutarate
Length = 527
Score = 25.4 bits (54), Expect = 7.8, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 71 EVGDMIVSINGQCTQAMTHVEAQQHI 96
+VGD V + G TQ + H E +HI
Sbjct: 151 QVGDQTVGVIGLTTQFIPHWEQPEHI 176
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,454,327
Number of Sequences: 62578
Number of extensions: 77723
Number of successful extensions: 400
Number of sequences better than 100.0: 191
Number of HSP's better than 100.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 215
Number of HSP's gapped (non-prelim): 196
length of query: 109
length of database: 14,973,337
effective HSP length: 73
effective length of query: 36
effective length of database: 10,405,143
effective search space: 374585148
effective search space used: 374585148
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)