Query psy5188
Match_columns 109
No_of_seqs 119 out of 1767
Neff 9.7
Searched_HMMs 46136
Date Fri Aug 16 19:35:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5188.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5188hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00595 PDZ: PDZ domain (Also 99.6 2.4E-14 5.3E-19 79.7 9.8 79 30-108 2-81 (81)
2 cd00992 PDZ_signaling PDZ doma 99.4 2.9E-11 6.3E-16 67.0 11.7 78 30-107 4-81 (82)
3 smart00228 PDZ Domain present 99.3 1.2E-10 2.5E-15 64.8 12.1 79 30-109 5-83 (85)
4 cd00136 PDZ PDZ domain, also c 99.3 6.6E-11 1.4E-15 63.8 9.7 67 39-107 2-69 (70)
5 PF13180 PDZ_2: PDZ domain; PD 99.3 1.6E-11 3.5E-16 68.5 7.4 68 39-109 2-71 (82)
6 KOG3550|consensus 99.3 5.6E-11 1.2E-15 72.5 7.8 71 37-107 100-171 (207)
7 KOG3549|consensus 99.2 1.5E-10 3.3E-15 79.0 7.5 87 22-108 50-137 (505)
8 KOG3209|consensus 99.2 2.9E-10 6.3E-15 83.3 9.0 82 28-109 898-981 (984)
9 cd00988 PDZ_CTP_protease PDZ d 99.1 1.4E-09 3E-14 60.8 9.2 68 39-109 3-71 (85)
10 KOG3209|consensus 99.0 1.5E-09 3.2E-14 79.7 7.8 77 30-107 757-834 (984)
11 KOG3551|consensus 99.0 1.2E-09 2.6E-14 75.4 6.2 80 28-107 86-166 (506)
12 cd00991 PDZ_archaeal_metallopr 99.0 4.7E-09 1E-13 58.1 7.6 56 52-109 10-67 (79)
13 cd00990 PDZ_glycyl_aminopeptid 98.9 3.2E-08 6.9E-13 54.6 8.3 65 39-109 2-66 (80)
14 cd00989 PDZ_metalloprotease PD 98.9 4E-08 8.7E-13 54.0 8.3 55 53-109 13-68 (79)
15 cd00987 PDZ_serine_protease PD 98.8 5.1E-08 1.1E-12 54.8 7.1 55 53-109 25-81 (90)
16 PLN00049 carboxyl-terminal pro 98.8 9.3E-08 2E-12 67.3 9.4 72 38-109 85-160 (389)
17 cd00986 PDZ_LON_protease PDZ d 98.8 8.7E-08 1.9E-12 52.8 7.2 54 53-109 9-64 (79)
18 TIGR00225 prc C-terminal pepti 98.7 1.1E-07 2.4E-12 65.7 8.6 69 38-109 51-120 (334)
19 PRK10139 serine endoprotease; 98.7 4.8E-08 1E-12 70.0 6.7 97 11-109 240-347 (455)
20 KOG3651|consensus 98.7 1.4E-07 3.1E-12 63.6 8.5 80 28-107 6-86 (429)
21 KOG3580|consensus 98.7 9E-08 1.9E-12 69.8 7.7 79 30-109 12-96 (1027)
22 TIGR02037 degP_htrA_DO peripla 98.7 4.8E-08 1E-12 69.4 5.9 70 38-109 234-314 (428)
23 PRK10898 serine endoprotease; 98.6 1.1E-07 2.4E-12 66.2 6.6 96 12-109 230-336 (353)
24 COG0793 Prc Periplasmic protea 98.6 3.9E-07 8.5E-12 64.5 8.8 70 38-109 100-170 (406)
25 PRK10779 zinc metallopeptidase 98.6 1.9E-07 4.1E-12 66.9 7.0 55 53-109 222-277 (449)
26 TIGR02037 degP_htrA_DO peripla 98.6 6.6E-07 1.4E-11 63.7 9.7 56 52-109 362-419 (428)
27 TIGR01713 typeII_sec_gspC gene 98.6 3.2E-07 7E-12 61.4 7.6 56 52-109 191-248 (259)
28 KOG3552|consensus 98.6 1E-07 2.2E-12 72.0 5.4 68 37-109 64-131 (1298)
29 PRK10942 serine endoprotease; 98.6 2.6E-07 5.7E-12 66.5 7.2 56 52-109 311-368 (473)
30 KOG3553|consensus 98.6 1.6E-07 3.5E-12 53.6 4.7 60 39-98 36-105 (124)
31 PRK10779 zinc metallopeptidase 98.5 2.5E-07 5.4E-12 66.2 6.0 57 53-109 127-183 (449)
32 PRK10942 serine endoprotease; 98.5 1.8E-06 3.9E-11 62.3 10.0 56 52-109 408-463 (473)
33 TIGR02038 protease_degS peripl 98.4 8.8E-07 1.9E-11 61.6 6.8 56 52-109 278-335 (351)
34 TIGR00054 RIP metalloprotease 98.4 1.8E-06 4E-11 61.4 7.6 55 53-109 204-259 (420)
35 PRK10139 serine endoprotease; 98.4 2.2E-06 4.8E-11 61.6 8.0 55 53-109 391-445 (455)
36 PRK11186 carboxy-terminal prot 98.4 2.4E-06 5.2E-11 63.7 8.2 69 38-109 244-319 (667)
37 KOG1892|consensus 98.4 4.4E-06 9.6E-11 63.9 9.4 81 27-107 932-1016(1629)
38 KOG3606|consensus 98.3 3E-06 6.4E-11 56.6 7.0 71 38-108 171-251 (358)
39 KOG3542|consensus 98.3 2.5E-06 5.5E-11 63.3 6.6 69 38-107 548-616 (1283)
40 KOG3580|consensus 98.2 3.8E-06 8.1E-11 61.6 6.1 68 37-106 416-485 (1027)
41 PF04495 GRASP55_65: GRASP55/6 98.2 2.4E-05 5.3E-10 47.7 8.7 79 28-108 12-99 (138)
42 KOG3571|consensus 98.2 9.9E-06 2.2E-10 58.1 7.4 80 28-107 249-336 (626)
43 KOG0609|consensus 98.1 2.8E-05 6E-10 56.2 8.7 78 28-107 124-202 (542)
44 TIGR03279 cyano_FeS_chp putati 98.0 1.1E-05 2.3E-10 57.4 5.2 48 56-107 2-49 (433)
45 TIGR02860 spore_IV_B stage IV 98.0 0.0002 4.3E-09 50.7 11.1 46 62-109 123-169 (402)
46 TIGR00054 RIP metalloprotease 98.0 1.4E-05 3.1E-10 56.9 5.5 39 52-90 128-166 (420)
47 KOG3605|consensus 97.9 2.8E-05 6E-10 57.4 5.6 86 22-108 641-732 (829)
48 PF14685 Tricorn_PDZ: Tricorn 97.7 0.00028 6E-09 39.8 6.7 56 53-109 13-78 (88)
49 COG0265 DegQ Trypsin-like seri 97.7 0.00018 3.9E-09 50.0 6.7 58 52-109 270-327 (347)
50 KOG3129|consensus 97.7 0.00022 4.8E-09 46.1 6.1 57 53-109 140-198 (231)
51 COG3975 Predicted protease wit 97.4 0.00068 1.5E-08 49.3 6.7 42 38-82 451-492 (558)
52 PRK09681 putative type II secr 97.3 0.0012 2.7E-08 44.6 6.3 51 57-109 209-264 (276)
53 KOG3532|consensus 97.3 0.0018 3.8E-08 48.7 7.3 63 38-104 386-448 (1051)
54 KOG3605|consensus 97.2 0.0011 2.3E-08 49.4 5.3 55 38-99 749-803 (829)
55 COG3480 SdrC Predicted secrete 97.0 0.0026 5.7E-08 43.7 5.8 56 53-109 131-186 (342)
56 KOG1421|consensus 96.8 0.0048 1E-07 46.5 6.1 54 53-109 304-358 (955)
57 KOG0606|consensus 96.6 0.0057 1.2E-07 48.1 5.6 53 55-107 661-713 (1205)
58 KOG1738|consensus 95.8 0.027 5.8E-07 42.0 5.3 68 38-107 213-281 (638)
59 KOG1320|consensus 95.7 0.057 1.2E-06 39.3 6.6 45 53-99 399-443 (473)
60 COG3031 PulC Type II secretory 95.3 0.14 3E-06 34.2 6.7 46 62-109 217-264 (275)
61 KOG3938|consensus 95.0 0.062 1.4E-06 36.3 4.5 77 28-107 128-207 (334)
62 COG0750 Predicted membrane-ass 93.9 0.24 5.2E-06 34.7 5.9 34 56-89 133-166 (375)
63 PF12812 PDZ_1: PDZ-like domai 92.9 0.79 1.7E-05 25.2 5.7 35 54-88 32-66 (78)
64 KOG3834|consensus 90.8 0.66 1.4E-05 33.5 4.7 55 53-108 16-71 (462)
65 KOG3834|consensus 88.6 4 8.6E-05 29.7 7.2 78 28-107 79-164 (462)
66 KOG2921|consensus 85.8 1 2.2E-05 32.4 3.0 36 53-88 221-257 (484)
67 KOG4407|consensus 85.6 0.43 9.3E-06 39.1 1.3 54 53-106 144-197 (1973)
68 PF11874 DUF3394: Domain of un 84.4 2.9 6.2E-05 26.9 4.4 38 39-79 112-149 (183)
69 KOG0792|consensus 80.8 0.82 1.8E-05 36.6 1.1 62 37-98 715-796 (1144)
70 KOG1421|consensus 71.6 20 0.00043 28.1 6.1 38 50-88 860-897 (955)
71 KOG4407|consensus 68.6 7.1 0.00015 32.6 3.4 32 56-87 100-131 (1973)
72 COG5233 GRH1 Peripheral Golgi 67.3 4.1 9E-05 28.6 1.7 32 54-85 65-96 (417)
73 KOG1703|consensus 65.7 3.4 7.4E-05 30.4 1.2 55 39-94 9-63 (479)
74 KOG4371|consensus 64.2 17 0.00036 29.8 4.5 41 69-109 1186-1226(1332)
75 KOG4371|consensus 58.6 25 0.00055 28.9 4.7 58 34-92 1253-1311(1332)
76 COG1625 Fe-S oxidoreductase, r 48.1 21 0.00045 26.0 2.6 35 55-89 4-39 (414)
77 COG4273 Uncharacterized conser 30.3 30 0.00064 21.0 1.0 30 56-85 50-79 (135)
78 cd06495 p23_NUDCD3_like p23-li 27.7 1.3E+02 0.0028 17.3 3.7 33 4-36 4-38 (102)
79 COG0260 PepB Leucyl aminopepti 27.6 69 0.0015 24.0 2.7 25 60-85 306-330 (485)
80 KOG2265|consensus 25.9 96 0.0021 20.0 2.8 34 3-36 17-52 (179)
81 PRK06531 yajC preprotein trans 24.8 48 0.001 19.6 1.2 16 67-82 34-49 (113)
82 PRK05886 yajC preprotein trans 23.5 58 0.0013 19.2 1.4 15 68-82 37-51 (109)
83 TIGR00739 yajC preprotein tran 23.2 63 0.0014 17.9 1.5 16 67-82 35-50 (84)
84 PRK00913 multifunctional amino 23.1 97 0.0021 23.2 2.8 32 53-85 297-331 (483)
85 PRK02268 hypothetical protein; 23.1 1E+02 0.0022 19.0 2.5 22 57-78 23-44 (141)
86 KOG2531|consensus 21.7 1.6E+02 0.0036 22.2 3.6 31 51-81 270-302 (545)
87 cd00433 Peptidase_M17 Cytosol 21.0 1.1E+02 0.0023 22.8 2.7 26 59-85 292-317 (468)
88 PRK03760 hypothetical protein; 21.0 84 0.0018 18.6 1.8 21 55-76 92-112 (117)
89 PRK05585 yajC preprotein trans 20.9 69 0.0015 18.7 1.4 16 67-82 50-65 (106)
90 PRK05015 aminopeptidase B; Pro 20.7 1.3E+02 0.0028 22.3 2.9 25 60-85 244-268 (424)
91 PF07591 PT-HINT: Pretoxin HIN 20.3 67 0.0014 19.2 1.3 15 70-84 77-91 (130)
92 COG1862 YajC Preprotein transl 20.2 84 0.0018 18.1 1.6 16 68-83 42-57 (97)
No 1
>PF00595 PDZ: PDZ domain (Also known as DHR or GLGF) Coordinates are not yet available; InterPro: IPR001478 PDZ domains are found in diverse signalling proteins in bacteria, yeasts, plants, insects and vertebrates [, ]. PDZ domains can occur in one or multiple copies and are nearly always found in cytoplasmic proteins. They bind either the carboxyl-terminal sequences of proteins or internal peptide sequences []. In most cases, interaction between a PDZ domain and its target is constitutive, with a binding affinity of 1 to 10 microns. However, agonist-dependent activation of cell surface receptors is sometimes required to promote interaction with a PDZ protein. PDZ domain proteins are frequently associated with the plasma membrane, a compartment where high concentrations of phosphatidylinositol 4,5-bisphosphate (PIP2) are found. Direct interaction between PIP2 and a subset of class II PDZ domains (syntenin, CASK, Tiam-1) has been demonstrated. PDZ domains consist of 80 to 90 amino acids comprising six beta-strands (beta-A to beta-F) and two alpha-helices, A and B, compactly arranged in a globular structure. Peptide binding of the ligand takes place in an elongated surface groove as an anti-parallel beta-strand interacts with the beta-B strand and the B helix. The structure of PDZ domains allows binding to a free carboxylate group at the end of a peptide through a carboxylate-binding loop between the beta-A and beta-B strands.; GO: 0005515 protein binding; PDB: 3AXA_A 1WF8_A 1QAV_B 1QAU_A 1B8Q_A 1MC7_A 2KAW_A 1I16_A 1VB7_A 1WI4_A ....
Probab=99.60 E-value=2.4e-14 Score=79.73 Aligned_cols=79 Identities=37% Similarity=0.509 Sum_probs=69.2
Q ss_pred EEEEecCCCCccEEEecccCCC-CCeEEEEECCCChhhhCCCCCCCEEEEECCEeCCCCCHHHHHHHHhCCCCeEEEEEE
Q psy5188 30 LKLKKLECEAWGFRLTGGRDFG-TPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQIL 108 (109)
Q Consensus 30 ~~~~~~~~~~~G~~~~~~~~~~-~~~~V~~v~~~~~a~~~Gl~~gD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~ 108 (109)
+++.+....++||.+.++.+.. .+++|..+.++++|+.+|+++||.|++|||.++.++++.+....++.+++.++|+|.
T Consensus 2 v~l~k~~~~~lG~~l~~~~~~~~~~~~V~~v~~~~~a~~~gl~~GD~Il~INg~~v~~~~~~~~~~~l~~~~~~v~L~V~ 81 (81)
T PF00595_consen 2 VTLEKSGNGPLGFTLRGGSDNDEKGVFVSSVVPGSPAERAGLKVGDRILEINGQSVRGMSHDEVVQLLKSASNPVTLTVQ 81 (81)
T ss_dssp EEEEESTTSBSSEEEEEESTSSSEEEEEEEECTTSHHHHHTSSTTEEEEEETTEESTTSBHHHHHHHHHHSTSEEEEEEE
T ss_pred EEEEeCCCCCcCEEEEecCCCCcCCEEEEEEeCCChHHhcccchhhhhheeCCEeCCCCCHHHHHHHHHCCCCcEEEEEC
Confidence 4566666699999999876543 478999999999999999999999999999999999999999999988778888874
No 2
>cd00992 PDZ_signaling PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases.
Probab=99.40 E-value=2.9e-11 Score=67.05 Aligned_cols=78 Identities=38% Similarity=0.608 Sum_probs=63.2
Q ss_pred EEEEecCCCCccEEEecccCCCCCeEEEEECCCChhhhCCCCCCCEEEEECCEeCCCCCHHHHHHHHhCCCCeEEEEE
Q psy5188 30 LKLKKLECEAWGFRLTGGRDFGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQI 107 (109)
Q Consensus 30 ~~~~~~~~~~~G~~~~~~~~~~~~~~V~~v~~~~~a~~~Gl~~gD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v 107 (109)
+.+.+....++|+.+........++.|..+.+++||+.+|+++||+|+++||.++.++++.+....++.....+.+++
T Consensus 4 ~~l~~~~~~~~G~~~~~~~~~~~~~~V~~v~~~s~a~~~gl~~GD~I~~ing~~i~~~~~~~~~~~l~~~~~~v~l~v 81 (82)
T cd00992 4 VTLRKDPGGGLGFSLRGGKDSGGGIFVSRVEPGGPAERGGLRVGDRILEVNGVSVEGLTHEEAVELLKNSGDEVTLTV 81 (82)
T ss_pred EEEEeCCCCCcCEEEeCcccCCCCeEEEEECCCChHHhCCCCCCCEEEEECCEEcCccCHHHHHHHHHhCCCeEEEEE
Confidence 445554468899999876543347899999999999999999999999999999998888888887777655666665
No 3
>smart00228 PDZ Domain present in PSD-95, Dlg, and ZO-1/2. Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities.
Probab=99.34 E-value=1.2e-10 Score=64.82 Aligned_cols=79 Identities=37% Similarity=0.610 Sum_probs=63.0
Q ss_pred EEEEecCCCCccEEEecccCCCCCeEEEEECCCChhhhCCCCCCCEEEEECCEeCCCCCHHHHHHHHhCCCCeEEEEEEC
Q psy5188 30 LKLKKLECEAWGFRLTGGRDFGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQILR 109 (109)
Q Consensus 30 ~~~~~~~~~~~G~~~~~~~~~~~~~~V~~v~~~~~a~~~Gl~~gD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~r 109 (109)
+.+.+.. ..+|+.+........++.|..+.++++++.+|+++||+|++||+.++.++++.+....+...+..+.+++.|
T Consensus 5 ~~~~~~~-~~~G~~~~~~~~~~~~~~i~~v~~~s~a~~~gl~~GD~I~~In~~~v~~~~~~~~~~~~~~~~~~~~l~i~r 83 (85)
T smart00228 5 VELEKGG-GGLGFSLVGGKDEGGGVVVSSVVPGSPAAKAGLKVGDVILEVNGTSVEGLTHLEAVDLLKKAGGKVTLTVLR 83 (85)
T ss_pred EEEEECC-CcccEEEECCCCCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEEe
Confidence 3444444 789999876543324799999999999999999999999999999999988877776666666688888765
No 4
>cd00136 PDZ PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif). Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(pos
Probab=99.32 E-value=6.6e-11 Score=63.85 Aligned_cols=67 Identities=30% Similarity=0.552 Sum_probs=56.6
Q ss_pred CccEEEecccCCCCCeEEEEECCCChhhhCCCCCCCEEEEECCEeCCCCCHHHHHHHHhCC-CCeEEEEE
Q psy5188 39 AWGFRLTGGRDFGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGS-GNTLTLQI 107 (109)
Q Consensus 39 ~~G~~~~~~~~~~~~~~V~~v~~~~~a~~~Gl~~gD~I~~vng~~v~~~~~~~~~~~~~~~-~~~v~l~v 107 (109)
++||.+....+ .++.|..+.+++||+.+|+++||+|+++||.++.++++.+....++.. +..+.+++
T Consensus 2 ~~G~~~~~~~~--~~~~V~~v~~~s~a~~~gl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v 69 (70)
T cd00136 2 GLGFSIRGGTE--GGVVVLSVEPGSPAERAGLQAGDVILAVNGTDVKNLTLEDVAELLKKEVGEKVTLTV 69 (70)
T ss_pred CccEEEecCCC--CCEEEEEeCCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhhCCCCeEEEEE
Confidence 57888876553 368999999999999999999999999999999998777777777765 57788776
No 5
>PF13180 PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_A 2PZD_B 2P3W_A 1VCW_C 1TE0_B 1SOZ_C 1SOT_C ....
Probab=99.31 E-value=1.6e-11 Score=68.46 Aligned_cols=68 Identities=28% Similarity=0.430 Sum_probs=50.7
Q ss_pred CccEEEecccCCCCCeEEEEECCCChhhhCCCCCCCEEEEECCEeCCCCCHHHHHHHH--hCCCCeEEEEEEC
Q psy5188 39 AWGFRLTGGRDFGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHI--IGSGNTLTLQILR 109 (109)
Q Consensus 39 ~~G~~~~~~~~~~~~~~V~~v~~~~~a~~~Gl~~gD~I~~vng~~v~~~~~~~~~~~~--~~~~~~v~l~v~r 109 (109)
.+|+.+..... ...+.|..+.+++||+.+|+++||.|+++||.++.+.... ...+ ...+..+.+++.|
T Consensus 2 ~lGv~~~~~~~-~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~--~~~l~~~~~g~~v~l~v~R 71 (82)
T PF13180_consen 2 GLGVTVQNLSD-TGGVVVVSVIPGSPAAKAGLQPGDIILAINGKPVNSSEDL--VNILSKGKPGDTVTLTVLR 71 (82)
T ss_dssp E-SEEEEECSC-SSSEEEEEESTTSHHHHTTS-TTEEEEEETTEESSSHHHH--HHHHHCSSTTSEEEEEEEE
T ss_pred EECeEEEEccC-CCeEEEEEeCCCCcHHHCCCCCCcEEEEECCEEcCCHHHH--HHHHHhCCCCCEEEEEEEE
Confidence 46777654332 2368999999999999999999999999999999765333 3344 3458999999876
No 6
>KOG3550|consensus
Probab=99.25 E-value=5.6e-11 Score=72.46 Aligned_cols=71 Identities=25% Similarity=0.504 Sum_probs=65.7
Q ss_pred CCCccEEEecccCCCCCeEEEEECCCChhhhCC-CCCCCEEEEECCEeCCCCCHHHHHHHHhCCCCeEEEEE
Q psy5188 37 CEAWGFRLTGGRDFGTPLTVLRVTGTSVAEEGG-MEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQI 107 (109)
Q Consensus 37 ~~~~G~~~~~~~~~~~~~~V~~v~~~~~a~~~G-l~~gD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v 107 (109)
+.++||++-||++...|++|+.+.||+.|.+.| |+.||+++++||..+.+-.++.+..+++.+-+++.+.+
T Consensus 100 deglgfnvmggkeqnspiyisriipggvadrhgglkrgdqllsvngvsvege~hekavellkaa~gsvklvv 171 (207)
T KOG3550|consen 100 DEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEHHEKAVELLKAAVGSVKLVV 171 (207)
T ss_pred ccccceeeccCcccCCceEEEeecCCccccccCcccccceeEeecceeecchhhHHHHHHHHHhcCcEEEEE
Confidence 489999999999999999999999999999988 99999999999999999889999999998877777765
No 7
>KOG3549|consensus
Probab=99.17 E-value=1.5e-10 Score=78.99 Aligned_cols=87 Identities=22% Similarity=0.420 Sum_probs=78.8
Q ss_pred ccceeeEEEEEEecCCCCccEEEecccCCCCCeEEEEECCCChhhhCC-CCCCCEEEEECCEeCCCCCHHHHHHHHhCCC
Q psy5188 22 TKEVMCEELKLKKLECEAWGFRLTGGRDFGTPLTVLRVTGTSVAEEGG-MEVGDMIVSINGQCTQAMTHVEAQQHIIGSG 100 (109)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~V~~v~~~~~a~~~G-l~~gD~I~~vng~~v~~~~~~~~~~~~~~~~ 100 (109)
|.+...+++++.++.-.++|+++.||.+-.-|+.|+.+..+..|...| |..||.|+.|||+.+..+.|++....++.+|
T Consensus 50 p~~s~eRtVtirRQ~vGGlGLSIKGGaEHn~PvviSkI~kdQaAd~tG~LFvGDAilqvNGi~v~~c~HeevV~iLRNAG 129 (505)
T KOG3549|consen 50 PMESKERTVTIRRQKVGGLGLSIKGGAEHNLPVVISKIYKDQAADITGQLFVGDAILQVNGIYVTACPHEEVVNILRNAG 129 (505)
T ss_pred CccCCceeEEEEeeecCcceeeeccccccCccEEeehhhhhhhhhhcCceEeeeeeEEeccEEeecCChHHHHHHHHhcC
Confidence 444555788888877799999999999887799999999999999999 9999999999999999999999999999999
Q ss_pred CeEEEEEE
Q psy5188 101 NTLTLQIL 108 (109)
Q Consensus 101 ~~v~l~v~ 108 (109)
+.++++|.
T Consensus 130 deVtlTV~ 137 (505)
T KOG3549|consen 130 DEVTLTVK 137 (505)
T ss_pred CEEEEEeH
Confidence 99999874
No 8
>KOG3209|consensus
Probab=99.16 E-value=2.9e-10 Score=83.32 Aligned_cols=82 Identities=34% Similarity=0.544 Sum_probs=71.4
Q ss_pred EEEEEEecCC-CCccEEEecccCCCCCeEEEEECCCChhhhCC-CCCCCEEEEECCEeCCCCCHHHHHHHHhCCCCeEEE
Q psy5188 28 EELKLKKLEC-EAWGFRLTGGRDFGTPLTVLRVTGTSVAEEGG-MEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTL 105 (109)
Q Consensus 28 ~~~~~~~~~~-~~~G~~~~~~~~~~~~~~V~~v~~~~~a~~~G-l~~gD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l 105 (109)
.-+++.+..+ .+|||+++||.+..-+++|..+..++||.+.| ++.||+|++|||...++++|..+..++++.+..+.+
T Consensus 898 ~~~~VelErG~kGFGFSiRGGreynM~LfVLRlAeDGPA~rdGrm~VGDqi~eINGesTkgmtH~rAIelIk~gg~~vll 977 (984)
T KOG3209|consen 898 DLYTVELERGAKGFGFSIRGGREYNMDLFVLRLAEDGPAIRDGRMRVGDQITEINGESTKGMTHDRAIELIKQGGRRVLL 977 (984)
T ss_pred CeeEEEeeccccccceEeecccccccceEEEEeccCCCccccCceeecceEEEecCcccCCCcHHHHHHHHHhCCeEEEE
Confidence 3455555555 89999999998888889999999999999999 999999999999999999999999999998777766
Q ss_pred EEEC
Q psy5188 106 QILR 109 (109)
Q Consensus 106 ~v~r 109 (109)
.+.|
T Consensus 978 ~Lr~ 981 (984)
T KOG3209|consen 978 LLRR 981 (984)
T ss_pred Eecc
Confidence 5543
No 9
>cd00988 PDZ_CTP_protease PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=99.13 E-value=1.4e-09 Score=60.76 Aligned_cols=68 Identities=25% Similarity=0.431 Sum_probs=53.2
Q ss_pred CccEEEecccCCCCCeEEEEECCCChhhhCCCCCCCEEEEECCEeCCCCCHHHHHHHHhC-CCCeEEEEEEC
Q psy5188 39 AWGFRLTGGRDFGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIG-SGNTLTLQILR 109 (109)
Q Consensus 39 ~~G~~~~~~~~~~~~~~V~~v~~~~~a~~~Gl~~gD~I~~vng~~v~~~~~~~~~~~~~~-~~~~v~l~v~r 109 (109)
++|+.+.... ..+.|..+.+++||+.+||++||.|++|||.++.++++.+....+.. .+..+.+++.|
T Consensus 3 ~lG~~~~~~~---~~~~V~~v~~~s~a~~~gl~~GD~I~~vng~~i~~~~~~~~~~~l~~~~~~~i~l~v~r 71 (85)
T cd00988 3 GIGLELKYDD---GGLVITSVLPGSPAAKAGIKAGDIIVAIDGEPVDGLSLEDVVKLLRGKAGTKVRLTLKR 71 (85)
T ss_pred EEEEEEEEcC---CeEEEEEecCCCCHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCEEEEEEEc
Confidence 4677765322 36889999999999999999999999999999998755665555644 46778887765
No 10
>KOG3209|consensus
Probab=99.02 E-value=1.5e-09 Score=79.73 Aligned_cols=77 Identities=29% Similarity=0.461 Sum_probs=64.6
Q ss_pred EEEEecCCCCccEEEecccCCCCCeEEEEECCCChhhhCC-CCCCCEEEEECCEeCCCCCHHHHHHHHhCCCCeEEEEE
Q psy5188 30 LKLKKLECEAWGFRLTGGRDFGTPLTVLRVTGTSVAEEGG-MEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQI 107 (109)
Q Consensus 30 ~~~~~~~~~~~G~~~~~~~~~~~~~~V~~v~~~~~a~~~G-l~~gD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v 107 (109)
+-+++....+|||.+......+ +.-|..+.+||||.+|| |+.||.|++|||+.+.+++|.+...+++.+|-+++|++
T Consensus 757 V~lhR~ENeGFGFVi~sS~~kp-~sgiGrIieGSPAdRCgkLkVGDrilAVNG~sI~~lsHadiv~LIKdaGlsVtLtI 834 (984)
T KOG3209|consen 757 VVLHRKENEGFGFVIMSSQNKP-ESGIGRIIEGSPADRCGKLKVGDRILAVNGQSILNLSHADIVSLIKDAGLSVTLTI 834 (984)
T ss_pred eEEecccCCceeEEEEecccCC-CCCccccccCChhHhhccccccceEEEecCeeeeccCchhHHHHHHhcCceEEEEE
Confidence 3444444589999876554332 33488999999999999 99999999999999999999999999999999999987
No 11
>KOG3551|consensus
Probab=99.00 E-value=1.2e-09 Score=75.39 Aligned_cols=80 Identities=26% Similarity=0.488 Sum_probs=73.6
Q ss_pred EEEEEEecCCCCccEEEecccCCCCCeEEEEECCCChhhhCC-CCCCCEEEEECCEeCCCCCHHHHHHHHhCCCCeEEEE
Q psy5188 28 EELKLKKLECEAWGFRLTGGRDFGTPLTVLRVTGTSVAEEGG-MEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQ 106 (109)
Q Consensus 28 ~~~~~~~~~~~~~G~~~~~~~~~~~~~~V~~v~~~~~a~~~G-l~~gD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~ 106 (109)
+.+.+.+....++|+++.||.++.-|+.|+.+.+|-.|.+.+ |..||.|++|||.+..+-+|+++.+.+++.|+.+.+.
T Consensus 86 R~V~V~K~d~gGLGISIKGGreNkMPIlISKIFkGlAADQt~aL~~gDaIlSVNG~dL~~AtHdeAVqaLKraGkeV~le 165 (506)
T KOG3551|consen 86 RRVRVVKQDAGGLGISIKGGRENKMPILISKIFKGLAADQTGALFLGDAILSVNGEDLRDATHDEAVQALKRAGKEVLLE 165 (506)
T ss_pred ceeEEEEecCCcceEEeecCcccCCceehhHhccccccccccceeeccEEEEecchhhhhcchHHHHHHHHhhCceeeee
Confidence 677888877799999999999988899999999999999998 9999999999999999999999999999999988776
Q ss_pred E
Q psy5188 107 I 107 (109)
Q Consensus 107 v 107 (109)
|
T Consensus 166 v 166 (506)
T KOG3551|consen 166 V 166 (506)
T ss_pred e
Confidence 5
No 12
>cd00991 PDZ_archaeal_metalloprotease PDZ domain of archaeal zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=99.00 E-value=4.7e-09 Score=58.10 Aligned_cols=56 Identities=25% Similarity=0.368 Sum_probs=44.6
Q ss_pred CCeEEEEECCCChhhhCCCCCCCEEEEECCEeCCCCCHHHHHHHHhC--CCCeEEEEEEC
Q psy5188 52 TPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIG--SGNTLTLQILR 109 (109)
Q Consensus 52 ~~~~V~~v~~~~~a~~~Gl~~gD~I~~vng~~v~~~~~~~~~~~~~~--~~~~v~l~v~r 109 (109)
.++.|..+.+++||+.+||++||.|+++||.++.++ .+....+.. .+..+.+++.|
T Consensus 10 ~Gv~V~~V~~~spa~~aGL~~GDiI~~Ing~~v~~~--~d~~~~l~~~~~g~~v~l~v~r 67 (79)
T cd00991 10 AGVVIVGVIVGSPAENAVLHTGDVIYSINGTPITTL--EDFMEALKPTKPGEVITVTVLP 67 (79)
T ss_pred CcEEEEEECCCChHHhcCCCCCCEEEEECCEEcCCH--HHHHHHHhcCCCCCEEEEEEEE
Confidence 468899999999999999999999999999999965 344444443 36777777764
No 13
>cd00990 PDZ_glycyl_aminopeptidase PDZ domain associated with archaeal and bacterial M61 glycyl-aminopeptidases. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand is presumed to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.88 E-value=3.2e-08 Score=54.58 Aligned_cols=65 Identities=25% Similarity=0.347 Sum_probs=46.3
Q ss_pred CccEEEecccCCCCCeEEEEECCCChhhhCCCCCCCEEEEECCEeCCCCCHHHHHHHHhCCCCeEEEEEEC
Q psy5188 39 AWGFRLTGGRDFGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQILR 109 (109)
Q Consensus 39 ~~G~~~~~~~~~~~~~~V~~v~~~~~a~~~Gl~~gD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~r 109 (109)
.+|+.+... ...+.|..+.++++|+.+|+++||.|+++||.++.+ +.+..... ..+..+.+++.|
T Consensus 2 ~~G~~~~~~---~~~~~V~~V~~~s~a~~aGl~~GD~I~~Ing~~v~~--~~~~l~~~-~~~~~v~l~v~r 66 (80)
T cd00990 2 YLGLTLDKE---EGLGKVTFVRDDSPADKAGLVAGDELVAVNGWRVDA--LQDRLKEY-QAGDPVELTVFR 66 (80)
T ss_pred cccEEEEcc---CCcEEEEEECCCChHHHhCCCCCCEEEEECCEEhHH--HHHHHHhc-CCCCEEEEEEEE
Confidence 356666432 235889999999999999999999999999999986 22222211 245677776653
No 14
>cd00989 PDZ_metalloprotease PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.87 E-value=4e-08 Score=53.97 Aligned_cols=55 Identities=29% Similarity=0.401 Sum_probs=43.0
Q ss_pred CeEEEEECCCChhhhCCCCCCCEEEEECCEeCCCCCHHHHHHHHhC-CCCeEEEEEEC
Q psy5188 53 PLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIG-SGNTLTLQILR 109 (109)
Q Consensus 53 ~~~V~~v~~~~~a~~~Gl~~gD~I~~vng~~v~~~~~~~~~~~~~~-~~~~v~l~v~r 109 (109)
++.|..+.++++|+.+|+++||.|+++||.++.++ .+....+.. .+..+.+++.|
T Consensus 13 ~~~V~~v~~~s~a~~~gl~~GD~I~~ing~~i~~~--~~~~~~l~~~~~~~~~l~v~r 68 (79)
T cd00989 13 EPVIGEVVPGSPAAKAGLKAGDRILAINGQKIKSW--EDLVDAVQENPGKPLTLTVER 68 (79)
T ss_pred CcEEEeECCCCHHHHcCCCCCCEEEEECCEECCCH--HHHHHHHHHCCCceEEEEEEE
Confidence 57899999999999999999999999999999965 344444443 35667776654
No 15
>cd00987 PDZ_serine_protease PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.79 E-value=5.1e-08 Score=54.75 Aligned_cols=55 Identities=27% Similarity=0.524 Sum_probs=43.7
Q ss_pred CeEEEEECCCChhhhCCCCCCCEEEEECCEeCCCCCHHHHHHHHhC--CCCeEEEEEEC
Q psy5188 53 PLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIG--SGNTLTLQILR 109 (109)
Q Consensus 53 ~~~V~~v~~~~~a~~~Gl~~gD~I~~vng~~v~~~~~~~~~~~~~~--~~~~v~l~v~r 109 (109)
++.|..+.+++||+.+|+++||.|+++||.++.++... ...+.. .+..+.+.+.|
T Consensus 25 g~~V~~v~~~s~a~~~gl~~GD~I~~Ing~~i~~~~~~--~~~l~~~~~~~~i~l~v~r 81 (90)
T cd00987 25 GVLVASVDPGSPAAKAGLKPGDVILAVNGKPVKSVADL--RRALAELKPGDKVTLTVLR 81 (90)
T ss_pred EEEEEEECCCCHHHHcCCCcCCEEEEECCEECCCHHHH--HHHHHhcCCCCEEEEEEEE
Confidence 68899999999999999999999999999999865433 333433 36777777754
No 16
>PLN00049 carboxyl-terminal processing protease; Provisional
Probab=98.77 E-value=9.3e-08 Score=67.29 Aligned_cols=72 Identities=24% Similarity=0.392 Sum_probs=54.4
Q ss_pred CCccEEEecccCC---CCCeEEEEECCCChhhhCCCCCCCEEEEECCEeCCCCCHHHHHHHHhC-CCCeEEEEEEC
Q psy5188 38 EAWGFRLTGGRDF---GTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIG-SGNTLTLQILR 109 (109)
Q Consensus 38 ~~~G~~~~~~~~~---~~~~~V~~v~~~~~a~~~Gl~~gD~I~~vng~~v~~~~~~~~~~~~~~-~~~~v~l~v~r 109 (109)
.++|+.+...... ...+.|..+.+++||+.+|+++||+|++|||.++.+++..+....++. .+..+.+++.|
T Consensus 85 ~GiG~~~~~~~~~~~~~~g~~V~~V~~~SPA~~aGl~~GD~Iv~InG~~v~~~~~~~~~~~l~g~~g~~v~ltv~r 160 (389)
T PLN00049 85 TGVGLEVGYPTGSDGPPAGLVVVAPAPGGPAARAGIRPGDVILAIDGTSTEGLSLYEAADRLQGPEGSSVELTLRR 160 (389)
T ss_pred eEEEEEEEEccCCCCccCcEEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCCEEEEEEEE
Confidence 5677776432211 125889999999999999999999999999999998776665555554 46777777754
No 17
>cd00986 PDZ_LON_protease PDZ domain of ATP-dependent LON serine proteases. Most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this bacterial subfamily of protease-associated PDZ domains a C-terminal beta-strand is thought to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.75 E-value=8.7e-08 Score=52.85 Aligned_cols=54 Identities=24% Similarity=0.329 Sum_probs=41.9
Q ss_pred CeEEEEECCCChhhhCCCCCCCEEEEECCEeCCCCCHHHHHHHHh--CCCCeEEEEEEC
Q psy5188 53 PLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHII--GSGNTLTLQILR 109 (109)
Q Consensus 53 ~~~V~~v~~~~~a~~~Gl~~gD~I~~vng~~v~~~~~~~~~~~~~--~~~~~v~l~v~r 109 (109)
++.|..+.+++||+. ||++||.|+++||.++.++ .+....+. ..+..+.+++.|
T Consensus 9 Gv~V~~V~~~s~A~~-gL~~GD~I~~Ing~~v~~~--~~~~~~l~~~~~~~~v~l~v~r 64 (79)
T cd00986 9 GVYVTSVVEGMPAAG-KLKAGDHIIAVDGKPFKEA--EELIDYIQSKKEGDTVKLKVKR 64 (79)
T ss_pred CEEEEEECCCCchhh-CCCCCCEEEEECCEECCCH--HHHHHHHHhCCCCCEEEEEEEE
Confidence 578899999999987 7999999999999999864 33444444 246677777754
No 18
>TIGR00225 prc C-terminal peptidase (prc). A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database.
Probab=98.73 E-value=1.1e-07 Score=65.68 Aligned_cols=69 Identities=30% Similarity=0.475 Sum_probs=52.7
Q ss_pred CCccEEEecccCCCCCeEEEEECCCChhhhCCCCCCCEEEEECCEeCCCCCHHHHHHHHhC-CCCeEEEEEEC
Q psy5188 38 EAWGFRLTGGRDFGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIG-SGNTLTLQILR 109 (109)
Q Consensus 38 ~~~G~~~~~~~~~~~~~~V~~v~~~~~a~~~Gl~~gD~I~~vng~~v~~~~~~~~~~~~~~-~~~~v~l~v~r 109 (109)
.++|+.+.... ..+.|..|.+++||+++||++||+|++|||.++.+++..+....+.. .+..+.+++.|
T Consensus 51 ~~lG~~~~~~~---~~~~V~~V~~~spA~~aGL~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~R 120 (334)
T TIGR00225 51 EGIGIQVGMDD---GEIVIVSPFEGSPAEKAGIKPGDKIIKINGKSVAGMSLDDAVALIRGKKGTKVSLEILR 120 (334)
T ss_pred EEEEEEEEEEC---CEEEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHhccCCCCCEEEEEEEe
Confidence 45777665321 25788999999999999999999999999999998765554444443 46778887765
No 19
>PRK10139 serine endoprotease; Provisional
Probab=98.71 E-value=4.8e-08 Score=69.96 Aligned_cols=97 Identities=20% Similarity=0.305 Sum_probs=62.4
Q ss_pred eeeeeeeeeecccceeeEEEEEEecCCCCccEEEecc---------cCCCCCeEEEEECCCChhhhCCCCCCCEEEEECC
Q psy5188 11 LQFDILIQLILTKEVMCEELKLKKLECEAWGFRLTGG---------RDFGTPLTVLRVTGTSVAEEGGMEVGDMIVSING 81 (109)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~---------~~~~~~~~V~~v~~~~~a~~~Gl~~gD~I~~vng 81 (109)
...+|+++..+.+.+..+-..--......+|+.+..- -+...++.|..|.+++||+++||++||.|+++||
T Consensus 240 ~gigfaIP~~~~~~v~~~l~~~g~v~r~~LGv~~~~l~~~~~~~lgl~~~~Gv~V~~V~~~SpA~~AGL~~GDvIl~InG 319 (455)
T PRK10139 240 VGIGFAIPSNMARTLAQQLIDFGEIKRGLLGIKGTEMSADIAKAFNLDVQRGAFVSEVLPNSGSAKAGVKAGDIITSLNG 319 (455)
T ss_pred cceEEEEEhHHHHHHHHHHhhcCcccccceeEEEEECCHHHHHhcCCCCCCceEEEEECCCChHHHCCCCCCCEEEEECC
Confidence 3456777776655543211110001124567665421 1123478899999999999999999999999999
Q ss_pred EeCCCCCHHHHHHHHh--CCCCeEEEEEEC
Q psy5188 82 QCTQAMTHVEAQQHII--GSGNTLTLQILR 109 (109)
Q Consensus 82 ~~v~~~~~~~~~~~~~--~~~~~v~l~v~r 109 (109)
.++.++... ...+. ..+..+.+++.|
T Consensus 320 ~~V~s~~dl--~~~l~~~~~g~~v~l~V~R 347 (455)
T PRK10139 320 KPLNSFAEL--RSRIATTEPGTKVKLGLLR 347 (455)
T ss_pred EECCCHHHH--HHHHHhcCCCCEEEEEEEE
Confidence 999976433 33343 346778887765
No 20
>KOG3651|consensus
Probab=98.71 E-value=1.4e-07 Score=63.62 Aligned_cols=80 Identities=29% Similarity=0.410 Sum_probs=68.3
Q ss_pred EEEEEEecCCCCccEEEecccCCCCCeEEEEECCCChhhhCC-CCCCCEEEEECCEeCCCCCHHHHHHHHhCCCCeEEEE
Q psy5188 28 EELKLKKLECEAWGFRLTGGRDFGTPLTVLRVTGTSVAEEGG-MEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQ 106 (109)
Q Consensus 28 ~~~~~~~~~~~~~G~~~~~~~~~~~~~~V~~v~~~~~a~~~G-l~~gD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~ 106 (109)
.++.+++...+-+|+++.||.-.++-++|..|..++||++.| ++.||+|++|||..+++....+...+++..-+.+.++
T Consensus 6 ~~v~ltKD~~nliGISIGGGapyCPClYiVQvFD~tPAa~dG~i~~GDEi~avNg~svKGktKveVAkmIQ~~~~eV~Ih 85 (429)
T KOG3651|consen 6 ETVELTKDEKNLIGISIGGGAPYCPCLYIVQVFDKTPAAKDGRIRCGDEIVAVNGISVKGKTKVEVAKMIQVSLNEVKIH 85 (429)
T ss_pred CcEEEeeccccceeEEecCCCCcCCeEEEEEeccCCchhccCccccCCeeEEecceeecCccHHHHHHHHHHhccceEEE
Confidence 456666666688999999998888788899999999999999 9999999999999999988888888887766666665
Q ss_pred E
Q psy5188 107 I 107 (109)
Q Consensus 107 v 107 (109)
+
T Consensus 86 y 86 (429)
T KOG3651|consen 86 Y 86 (429)
T ss_pred e
Confidence 4
No 21
>KOG3580|consensus
Probab=98.70 E-value=9e-08 Score=69.76 Aligned_cols=79 Identities=25% Similarity=0.371 Sum_probs=65.9
Q ss_pred EEEEecCCCCccEEEecccCCCC------CeEEEEECCCChhhhCCCCCCCEEEEECCEeCCCCCHHHHHHHHhCCCCeE
Q psy5188 30 LKLKKLECEAWGFRLTGGRDFGT------PLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTL 103 (109)
Q Consensus 30 ~~~~~~~~~~~G~~~~~~~~~~~------~~~V~~v~~~~~a~~~Gl~~gD~I~~vng~~v~~~~~~~~~~~~~~~~~~v 103 (109)
+++.+....+||+.+.||.+.++ .+.|+.|.+|+||+.. |+.||.++.|||..+.+..+..+.+.++.+++..
T Consensus 12 vTL~kdp~rGFGIAiSGGRDnPhf~~getSiViSDVlpGGPAeG~-LQenDrvvMVNGvsMenv~haFAvQqLrksgK~A 90 (1027)
T KOG3580|consen 12 VTLQKDPKRGFGIAISGGRDNPHFENGETSIVISDVLPGGPAEGL-LQENDRVVMVNGVSMENVLHAFAVQQLRKSGKVA 90 (1027)
T ss_pred eeeecCCCCcceeEeecCCCCCCccCCceeEEEeeccCCCCcccc-cccCCeEEEEcCcchhhhHHHHHHHHHHhhccce
Confidence 44444445788889999877643 4778999999999876 9999999999999999999998899999998888
Q ss_pred EEEEEC
Q psy5188 104 TLQILR 109 (109)
Q Consensus 104 ~l~v~r 109 (109)
.++|.|
T Consensus 91 ~ItvkR 96 (1027)
T KOG3580|consen 91 AITVKR 96 (1027)
T ss_pred eEEecc
Confidence 888865
No 22
>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.
Probab=98.68 E-value=4.8e-08 Score=69.43 Aligned_cols=70 Identities=29% Similarity=0.393 Sum_probs=51.6
Q ss_pred CCccEEEeccc---------CCCCCeEEEEECCCChhhhCCCCCCCEEEEECCEeCCCCCHHHHHHHHh--CCCCeEEEE
Q psy5188 38 EAWGFRLTGGR---------DFGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHII--GSGNTLTLQ 106 (109)
Q Consensus 38 ~~~G~~~~~~~---------~~~~~~~V~~v~~~~~a~~~Gl~~gD~I~~vng~~v~~~~~~~~~~~~~--~~~~~v~l~ 106 (109)
..+|+.+..-. ....++.|..|.+++||+++||++||+|+++||.++.++... ...+. ..+..+.++
T Consensus 234 ~~lGi~~~~~~~~~~~~lgl~~~~Gv~V~~V~~~spA~~aGL~~GDvI~~Vng~~i~~~~~~--~~~l~~~~~g~~v~l~ 311 (428)
T TIGR02037 234 GWLGVTIQEVTSDLAKSLGLEKQRGALVAQVLPGSPAEKAGLKAGDVILSVNGKPISSFADL--RRAIGTLKPGKKVTLG 311 (428)
T ss_pred CcCceEeecCCHHHHHHcCCCCCCceEEEEccCCCChHHcCCCCCCEEEEECCEEcCCHHHH--HHHHHhcCCCCEEEEE
Confidence 55677765322 112468899999999999999999999999999999965433 33333 347788888
Q ss_pred EEC
Q psy5188 107 ILR 109 (109)
Q Consensus 107 v~r 109 (109)
+.|
T Consensus 312 v~R 314 (428)
T TIGR02037 312 ILR 314 (428)
T ss_pred EEE
Confidence 765
No 23
>PRK10898 serine endoprotease; Provisional
Probab=98.64 E-value=1.1e-07 Score=66.15 Aligned_cols=96 Identities=17% Similarity=0.223 Sum_probs=60.9
Q ss_pred eeeeeeeeecccceeeEEEEEEecCCCCccEEEecc---------cCCCCCeEEEEECCCChhhhCCCCCCCEEEEECCE
Q psy5188 12 QFDILIQLILTKEVMCEELKLKKLECEAWGFRLTGG---------RDFGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQ 82 (109)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~---------~~~~~~~~V~~v~~~~~a~~~Gl~~gD~I~~vng~ 82 (109)
..+|.++..+.+....+-..--......+|+....- .....++.|..+.+++||+++||++||+|+++||.
T Consensus 230 g~~faIP~~~~~~~~~~l~~~G~~~~~~lGi~~~~~~~~~~~~~~~~~~~Gv~V~~V~~~spA~~aGL~~GDvI~~Ing~ 309 (353)
T PRK10898 230 GIGFAIPTQLATKIMDKLIRDGRVIRGYIGIGGREIAPLHAQGGGIDQLQGIVVNEVSPDGPAAKAGIQVNDLIISVNNK 309 (353)
T ss_pred ceEEEEchHHHHHHHHHHhhcCcccccccceEEEECCHHHHHhcCCCCCCeEEEEEECCCChHHHcCCCCCCEEEEECCE
Confidence 456666666655444321110000124567765421 11124788999999999999999999999999999
Q ss_pred eCCCCCHHHHHHHHh--CCCCeEEEEEEC
Q psy5188 83 CTQAMTHVEAQQHII--GSGNTLTLQILR 109 (109)
Q Consensus 83 ~v~~~~~~~~~~~~~--~~~~~v~l~v~r 109 (109)
++.++... ...+. ..+..+.+++.|
T Consensus 310 ~V~s~~~l--~~~l~~~~~g~~v~l~v~R 336 (353)
T PRK10898 310 PAISALET--MDQVAEIRPGSVIPVVVMR 336 (353)
T ss_pred EcCCHHHH--HHHHHhcCCCCEEEEEEEE
Confidence 99865332 23332 357778887765
No 24
>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]
Probab=98.61 E-value=3.9e-07 Score=64.48 Aligned_cols=70 Identities=30% Similarity=0.423 Sum_probs=58.3
Q ss_pred CCccEEEecccCCCCCeEEEEECCCChhhhCCCCCCCEEEEECCEeCCCCCHHHHHHHHhC-CCCeEEEEEEC
Q psy5188 38 EAWGFRLTGGRDFGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIG-SGNTLTLQILR 109 (109)
Q Consensus 38 ~~~G~~~~~~~~~~~~~~V~~v~~~~~a~~~Gl~~gD~I~~vng~~v~~~~~~~~~~~~~~-~~~~v~l~v~r 109 (109)
.++|+.+.-... ..+.|....+++||+++|+++||.|++|||.++.++...++...++. .|..+++++.|
T Consensus 100 ~GiG~~i~~~~~--~~~~V~s~~~~~PA~kagi~~GD~I~~IdG~~~~~~~~~~av~~irG~~Gt~V~L~i~r 170 (406)
T COG0793 100 GGIGIELQMEDI--GGVKVVSPIDGSPAAKAGIKPGDVIIKIDGKSVGGVSLDEAVKLIRGKPGTKVTLTILR 170 (406)
T ss_pred cceeEEEEEecC--CCcEEEecCCCChHHHcCCCCCCEEEEECCEEccCCCHHHHHHHhCCCCCCeEEEEEEE
Confidence 677877764432 36788999999999999999999999999999999987777777765 48899998876
No 25
>PRK10779 zinc metallopeptidase RseP; Provisional
Probab=98.60 E-value=1.9e-07 Score=66.86 Aligned_cols=55 Identities=27% Similarity=0.386 Sum_probs=43.5
Q ss_pred CeEEEEECCCChhhhCCCCCCCEEEEECCEeCCCCCHHHHHHHHhC-CCCeEEEEEEC
Q psy5188 53 PLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIG-SGNTLTLQILR 109 (109)
Q Consensus 53 ~~~V~~v~~~~~a~~~Gl~~gD~I~~vng~~v~~~~~~~~~~~~~~-~~~~v~l~v~r 109 (109)
+..|..|.++|||+++|+++||+|+++||.++.++. +....+.. .+..+.+++.|
T Consensus 222 ~~vV~~V~~~SpA~~AGL~~GDvIl~Ing~~V~s~~--dl~~~l~~~~~~~v~l~v~R 277 (449)
T PRK10779 222 EPVLAEVQPNSAASKAGLQAGDRIVKVDGQPLTQWQ--TFVTLVRDNPGKPLALEIER 277 (449)
T ss_pred CcEEEeeCCCCHHHHcCCCCCCEEEEECCEEcCCHH--HHHHHHHhCCCCEEEEEEEE
Confidence 467899999999999999999999999999998653 33344443 46677777765
No 26
>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.
Probab=98.60 E-value=6.6e-07 Score=63.71 Aligned_cols=56 Identities=30% Similarity=0.456 Sum_probs=45.8
Q ss_pred CCeEEEEECCCChhhhCCCCCCCEEEEECCEeCCCCCHHHHHHHHhC--CCCeEEEEEEC
Q psy5188 52 TPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIG--SGNTLTLQILR 109 (109)
Q Consensus 52 ~~~~V~~v~~~~~a~~~Gl~~gD~I~~vng~~v~~~~~~~~~~~~~~--~~~~v~l~v~r 109 (109)
.++.|..+.+++||+++||++||.|+++||.++.++. +....+.. .+..+.+++.|
T Consensus 362 ~Gv~V~~V~~~SpA~~aGL~~GDvI~~Ing~~V~s~~--d~~~~l~~~~~g~~v~l~v~R 419 (428)
T TIGR02037 362 KGVVVTKVVSGSPAARAGLQPGDVILSVNQQPVSSVA--ELRKVLDRAKKGGRVALLILR 419 (428)
T ss_pred CceEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCHH--HHHHHHHhcCCCCEEEEEEEE
Confidence 4689999999999999999999999999999998654 33444443 47788888875
No 27
>TIGR01713 typeII_sec_gspC general secretion pathway protein C. This model represents GspC, protein C of the main terminal branch of the general secretion pathway, also called type II secretion. This system transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.
Probab=98.59 E-value=3.2e-07 Score=61.36 Aligned_cols=56 Identities=21% Similarity=0.234 Sum_probs=45.0
Q ss_pred CCeEEEEECCCChhhhCCCCCCCEEEEECCEeCCCCCHHHHHHHHhC--CCCeEEEEEEC
Q psy5188 52 TPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIG--SGNTLTLQILR 109 (109)
Q Consensus 52 ~~~~V~~v~~~~~a~~~Gl~~gD~I~~vng~~v~~~~~~~~~~~~~~--~~~~v~l~v~r 109 (109)
.++.|..+.++++++++|+++||.|++|||.++.+.... ...+.+ .+..+.+++.|
T Consensus 191 ~G~~v~~v~~~s~a~~aGLr~GDvIv~ING~~i~~~~~~--~~~l~~~~~~~~v~l~V~R 248 (259)
T TIGR01713 191 EGYRLNPGKDPSLFYKSGLQDGDIAVALNGLDLRDPEQA--FQALQMLREETNLTLTVER 248 (259)
T ss_pred eEEEEEecCCCCHHHHcCCCCCCEEEEECCEEcCCHHHH--HHHHHhcCCCCeEEEEEEE
Confidence 478899999999999999999999999999999965433 333433 45788888876
No 28
>KOG3552|consensus
Probab=98.59 E-value=1e-07 Score=72.04 Aligned_cols=68 Identities=19% Similarity=0.331 Sum_probs=57.6
Q ss_pred CCCccEEEecccCCCCCeEEEEECCCChhhhCCCCCCCEEEEECCEeCCCCCHHHHHHHHhCCCCeEEEEEEC
Q psy5188 37 CEAWGFRLTGGRDFGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQILR 109 (109)
Q Consensus 37 ~~~~G~~~~~~~~~~~~~~V~~v~~~~~a~~~Gl~~gD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~r 109 (109)
...+||-+..| .|+.|..|.+|+|+... |.+||+|+.|||.++++.+++...++.+.+...+.++|.+
T Consensus 64 ~~~lGFgfvag----rPviVr~VT~GGps~GK-L~PGDQIl~vN~Epv~daprervIdlvRace~sv~ltV~q 131 (1298)
T KOG3552|consen 64 NASLGFGFVAG----RPVIVRFVTEGGPSIGK-LQPGDQILAVNGEPVKDAPRERVIDLVRACESSVNLTVCQ 131 (1298)
T ss_pred cccccceeecC----CceEEEEecCCCCcccc-ccCCCeEEEecCcccccccHHHHHHHHHHHhhhcceEEec
Confidence 44455555544 38999999999998776 9999999999999999999999999999998999888864
No 29
>PRK10942 serine endoprotease; Provisional
Probab=98.57 E-value=2.6e-07 Score=66.53 Aligned_cols=56 Identities=30% Similarity=0.447 Sum_probs=44.6
Q ss_pred CCeEEEEECCCChhhhCCCCCCCEEEEECCEeCCCCCHHHHHHHHh--CCCCeEEEEEEC
Q psy5188 52 TPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHII--GSGNTLTLQILR 109 (109)
Q Consensus 52 ~~~~V~~v~~~~~a~~~Gl~~gD~I~~vng~~v~~~~~~~~~~~~~--~~~~~v~l~v~r 109 (109)
.++.|..|.+++||+++||++||+|+++||.++.++.... ..+. ..+..+.+++.|
T Consensus 311 ~GvlV~~V~~~SpA~~AGL~~GDvIl~InG~~V~s~~dl~--~~l~~~~~g~~v~l~v~R 368 (473)
T PRK10942 311 RGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPISSFAALR--AQVGTMPVGSKLTLGLLR 368 (473)
T ss_pred CceEEEEECCCChHHHcCCCCCCEEEEECCEECCCHHHHH--HHHHhcCCCCEEEEEEEE
Confidence 4788999999999999999999999999999999764433 3332 346777777754
No 30
>KOG3553|consensus
Probab=98.56 E-value=1.6e-07 Score=53.57 Aligned_cols=60 Identities=33% Similarity=0.460 Sum_probs=50.2
Q ss_pred CccEEEecccCC----------CCCeEEEEECCCChhhhCCCCCCCEEEEECCEeCCCCCHHHHHHHHhC
Q psy5188 39 AWGFRLTGGRDF----------GTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIG 98 (109)
Q Consensus 39 ~~G~~~~~~~~~----------~~~~~V~~v~~~~~a~~~Gl~~gD~I~~vng~~v~~~~~~~~~~~~~~ 98 (109)
.+||.+.+|.+. ..+++|..|..||||+.+||+.+|.|+.+||..+.-+.+..+...+++
T Consensus 36 ~~GFkIGGGIDQDp~k~Pf~ytD~GiYvT~V~eGsPA~~AGLrihDKIlQvNG~DfTMvTHd~Avk~i~k 105 (124)
T KOG3553|consen 36 ILGFKIGGGIDQDPSKNPFSYTDKGIYVTRVSEGSPAEIAGLRIHDKILQVNGWDFTMVTHDQAVKRITK 105 (124)
T ss_pred EEEEEeccccCCCcccCCCCcCCccEEEEEeccCChhhhhcceecceEEEecCceeEEEEhHHHHHHhhH
Confidence 368888877654 246899999999999999999999999999999987788877766654
No 31
>PRK10779 zinc metallopeptidase RseP; Provisional
Probab=98.53 E-value=2.5e-07 Score=66.24 Aligned_cols=57 Identities=14% Similarity=0.123 Sum_probs=43.9
Q ss_pred CeEEEEECCCChhhhCCCCCCCEEEEECCEeCCCCCHHHHHHHHhCCCCeEEEEEEC
Q psy5188 53 PLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQILR 109 (109)
Q Consensus 53 ~~~V~~v~~~~~a~~~Gl~~gD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~r 109 (109)
+..|..|.++|||+++|+++||.|+++||.++.+++...........++.+.+++.|
T Consensus 127 ~~lV~~V~~~SpA~kAGLk~GDvI~~vnG~~V~~~~~l~~~v~~~~~g~~v~v~v~R 183 (449)
T PRK10779 127 RPVVGEIAPNSIAAQAQIAPGTELKAVDGIETPDWDAVRLALVSKIGDESTTITVAP 183 (449)
T ss_pred CccccccCCCCHHHHcCCCCCCEEEEECCEEcCCHHHHHHHHHhhccCCceEEEEEe
Confidence 346889999999999999999999999999999775443332223346677777765
No 32
>PRK10942 serine endoprotease; Provisional
Probab=98.51 E-value=1.8e-06 Score=62.27 Aligned_cols=56 Identities=25% Similarity=0.318 Sum_probs=45.7
Q ss_pred CCeEEEEECCCChhhhCCCCCCCEEEEECCEeCCCCCHHHHHHHHhCCCCeEEEEEEC
Q psy5188 52 TPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQILR 109 (109)
Q Consensus 52 ~~~~V~~v~~~~~a~~~Gl~~gD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~r 109 (109)
.++.|..+.++++|+.+||++||.|++|||.++.++ .+....+...+..+.+++.|
T Consensus 408 ~gvvV~~V~~~S~A~~aGL~~GDvIv~VNg~~V~s~--~dl~~~l~~~~~~v~l~V~R 463 (473)
T PRK10942 408 KGVVVDNVKPGTPAAQIGLKKGDVIIGANQQPVKNI--AELRKILDSKPSVLALNIQR 463 (473)
T ss_pred CCeEEEEeCCCChHHHcCCCCCCEEEEECCEEcCCH--HHHHHHHHhCCCeEEEEEEE
Confidence 368899999999999999999999999999999975 44445555555677787765
No 33
>TIGR02038 protease_degS periplasmic serine pepetdase DegS. This family consists of the periplasmic serine protease DegS (HhoB), a shorter paralog of protease DO (HtrA, DegP) and DegQ (HhoA). It is found in E. coli and several other Proteobacteria of the gamma subdivision. It contains a trypsin domain and a single copy of PDZ domain (in contrast to DegP with two copies). A critical role of this DegS is to sense stress in the periplasm and partially degrade an inhibitor of sigma(E).
Probab=98.44 E-value=8.8e-07 Score=61.65 Aligned_cols=56 Identities=20% Similarity=0.351 Sum_probs=44.8
Q ss_pred CCeEEEEECCCChhhhCCCCCCCEEEEECCEeCCCCCHHHHHHHHh--CCCCeEEEEEEC
Q psy5188 52 TPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHII--GSGNTLTLQILR 109 (109)
Q Consensus 52 ~~~~V~~v~~~~~a~~~Gl~~gD~I~~vng~~v~~~~~~~~~~~~~--~~~~~v~l~v~r 109 (109)
.++.|..+.+++||+++||++||+|+++||.++.++... ...+. ..+..+.+++.|
T Consensus 278 ~Gv~V~~V~~~spA~~aGL~~GDvI~~Ing~~V~s~~dl--~~~l~~~~~g~~v~l~v~R 335 (351)
T TIGR02038 278 RGIVITGVDPNGPAARAGILVRDVILKYDGKDVIGAEEL--MDRIAETRPGSKVMVTVLR 335 (351)
T ss_pred ccceEeecCCCChHHHCCCCCCCEEEEECCEEcCCHHHH--HHHHHhcCCCCEEEEEEEE
Confidence 368899999999999999999999999999999865333 33343 357788888765
No 34
>TIGR00054 RIP metalloprotease RseP. A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.
Probab=98.40 E-value=1.8e-06 Score=61.40 Aligned_cols=55 Identities=27% Similarity=0.410 Sum_probs=43.7
Q ss_pred CeEEEEECCCChhhhCCCCCCCEEEEECCEeCCCCCHHHHHHHHhC-CCCeEEEEEEC
Q psy5188 53 PLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIG-SGNTLTLQILR 109 (109)
Q Consensus 53 ~~~V~~v~~~~~a~~~Gl~~gD~I~~vng~~v~~~~~~~~~~~~~~-~~~~v~l~v~r 109 (109)
++.|..|.+++||+.+|+++||+|+++||.++.++ .+....+.. .+..+.+++.|
T Consensus 204 g~vV~~V~~~SpA~~aGL~~GD~Iv~Vng~~V~s~--~dl~~~l~~~~~~~v~l~v~R 259 (420)
T TIGR00054 204 EPVLSDVTPNSPAEKAGLKEGDYIQSINGEKLRSW--TDFVSAVKENPGKSMDIKVER 259 (420)
T ss_pred CcEEEEECCCCHHHHcCCCCCCEEEEECCEECCCH--HHHHHHHHhCCCCceEEEEEE
Confidence 57889999999999999999999999999999865 444444543 45667777654
No 35
>PRK10139 serine endoprotease; Provisional
Probab=98.39 E-value=2.2e-06 Score=61.57 Aligned_cols=55 Identities=22% Similarity=0.389 Sum_probs=44.6
Q ss_pred CeEEEEECCCChhhhCCCCCCCEEEEECCEeCCCCCHHHHHHHHhCCCCeEEEEEEC
Q psy5188 53 PLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQILR 109 (109)
Q Consensus 53 ~~~V~~v~~~~~a~~~Gl~~gD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~r 109 (109)
++.|..+.+++||+++||++||.|++|||.++.++ .+....+......+.+++.|
T Consensus 391 Gv~V~~V~~~spA~~aGL~~GD~I~~Ing~~v~~~--~~~~~~l~~~~~~v~l~v~R 445 (455)
T PRK10139 391 GIKIDEVVKGSPAAQAGLQKDDVIIGVNRDRVNSI--AEMRKVLAAKPAIIALQIVR 445 (455)
T ss_pred ceEEEEeCCCChHHHcCCCCCCEEEEECCEEcCCH--HHHHHHHHhCCCeEEEEEEE
Confidence 68899999999999999999999999999999865 44445555444677777765
No 36
>PRK11186 carboxy-terminal protease; Provisional
Probab=98.38 E-value=2.4e-06 Score=63.72 Aligned_cols=69 Identities=23% Similarity=0.282 Sum_probs=52.6
Q ss_pred CCccEEEecccCCCCCeEEEEECCCChhhhC-CCCCCCEEEEEC--CE---eCCCCCHHHHHHHHhC-CCCeEEEEEEC
Q psy5188 38 EAWGFRLTGGRDFGTPLTVLRVTGTSVAEEG-GMEVGDMIVSIN--GQ---CTQAMTHVEAQQHIIG-SGNTLTLQILR 109 (109)
Q Consensus 38 ~~~G~~~~~~~~~~~~~~V~~v~~~~~a~~~-Gl~~gD~I~~vn--g~---~v~~~~~~~~~~~~~~-~~~~v~l~v~r 109 (109)
.++|+.+.... ..+.|..+.+|+||+++ |+++||.|++|| |. .+.++...+...+++. .|..+.+++.|
T Consensus 244 ~GIGa~l~~~~---~~~~V~~vipGsPA~ka~gLk~GD~IlaVn~~g~~~~dv~g~~~~~vv~lirG~~Gt~V~LtV~r 319 (667)
T PRK11186 244 EGIGAVLQMDD---DYTVINSLVAGGPAAKSKKLSVGDKIVGVGQDGKPIVDVIGWRLDDVVALIKGPKGSKVRLEILP 319 (667)
T ss_pred eEEEEEEEEeC---CeEEEEEccCCChHHHhCCCCCCCEEEEECCCCCcccccccCCHHHHHHHhcCCCCCEEEEEEEe
Confidence 67788775432 24788999999999998 899999999999 44 3445666667777765 48888888864
No 37
>KOG1892|consensus
Probab=98.38 E-value=4.4e-06 Score=63.90 Aligned_cols=81 Identities=19% Similarity=0.351 Sum_probs=67.3
Q ss_pred eEEEEEEecCCCCccEEEecccC---CCCCeEEEEECCCChhhhCC-CCCCCEEEEECCEeCCCCCHHHHHHHHhCCCCe
Q psy5188 27 CEELKLKKLECEAWGFRLTGGRD---FGTPLTVLRVTGTSVAEEGG-MEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNT 102 (109)
Q Consensus 27 ~~~~~~~~~~~~~~G~~~~~~~~---~~~~~~V~~v~~~~~a~~~G-l~~gD~I~~vng~~v~~~~~~~~~~~~~~~~~~ 102 (109)
++..++++...+++|+++...+. ..-+++|..|.+|++|...| |..||++++|||+..-+.+.+.+..+..+.|..
T Consensus 932 pei~~vtL~KnnGmGLSIVAAkGaGq~klGIYvKsVV~GgaAd~DGRL~aGDQLLsVdG~SLiGisQErAA~lmtrtg~v 1011 (1629)
T KOG1892|consen 932 PEIITVTLKKNNGMGLSIVAAKGAGQRKLGIYVKSVVEGGAADHDGRLEAGDQLLSVDGHSLIGISQERAARLMTRTGNV 1011 (1629)
T ss_pred CceEEEEEeccCCceEEEEeeccCCccccceEEEEeccCCccccccccccCceeeeecCcccccccHHHHHHHHhccCCe
Confidence 35667777777888988764322 22378999999999999999 999999999999999999999999988888898
Q ss_pred EEEEE
Q psy5188 103 LTLQI 107 (109)
Q Consensus 103 v~l~v 107 (109)
+.+.|
T Consensus 1012 V~leV 1016 (1629)
T KOG1892|consen 1012 VHLEV 1016 (1629)
T ss_pred EEEeh
Confidence 88876
No 38
>KOG3606|consensus
Probab=98.34 E-value=3e-06 Score=56.57 Aligned_cols=71 Identities=18% Similarity=0.344 Sum_probs=58.3
Q ss_pred CCccEEEeccc---------CCCCCeEEEEECCCChhhhCC-CCCCCEEEEECCEeCCCCCHHHHHHHHhCCCCeEEEEE
Q psy5188 38 EAWGFRLTGGR---------DFGTPLTVLRVTGTSVAEEGG-MEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQI 107 (109)
Q Consensus 38 ~~~G~~~~~~~---------~~~~~~~V~~v~~~~~a~~~G-l~~gD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v 107 (109)
.++||-++.|. +..++++|+...+|+.|+.-| |..+|++++|||+.|.+.+.++...+.-+....+.++|
T Consensus 171 kPLGFYIRDG~SVRVtp~GlekvpGIFISRlVpGGLAeSTGLLaVnDEVlEVNGIEVaGKTLDQVTDMMvANshNLIiTV 250 (358)
T KOG3606|consen 171 KPLGFYIRDGTSVRVTPHGLEKVPGIFISRLVPGGLAESTGLLAVNDEVLEVNGIEVAGKTLDQVTDMMVANSHNLIITV 250 (358)
T ss_pred CCceEEEecCceEEeccccccccCceEEEeecCCccccccceeeecceeEEEcCEEeccccHHHHHHHHhhcccceEEEe
Confidence 68999887542 234689999999999999999 88999999999999999888887777666667777776
Q ss_pred E
Q psy5188 108 L 108 (109)
Q Consensus 108 ~ 108 (109)
.
T Consensus 251 k 251 (358)
T KOG3606|consen 251 K 251 (358)
T ss_pred c
Confidence 3
No 39
>KOG3542|consensus
Probab=98.30 E-value=2.5e-06 Score=63.29 Aligned_cols=69 Identities=30% Similarity=0.456 Sum_probs=59.6
Q ss_pred CCccEEEecccCCCCCeEEEEECCCChhhhCCCCCCCEEEEECCEeCCCCCHHHHHHHHhCCCCeEEEEE
Q psy5188 38 EAWGFRLTGGRDFGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQI 107 (109)
Q Consensus 38 ~~~G~~~~~~~~~~~~~~V~~v~~~~~a~~~Gl~~gD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v 107 (109)
.++.|++.||.+...+++|..|.|++.|+..|++.||+|++|||....+.+...+..+++.. ..+.+++
T Consensus 548 ~pl~f~L~GGsEkGfgifV~~V~pgskAa~~GlKRgDqilEVNgQnfenis~~KA~eiLrnn-thLtltv 616 (1283)
T KOG3542|consen 548 DPLMFRLVGGSEKGFGIFVAEVFPGSKAAREGLKRGDQILEVNGQNFENISAKKAEEILRNN-THLTLTV 616 (1283)
T ss_pred CCceeEeccCccccceeEEeeecCCchHHHhhhhhhhhhhhccccchhhhhHHHHHHHhcCC-ceEEEEE
Confidence 78999999999888899999999999999999999999999999999998887777777653 3444544
No 40
>KOG3580|consensus
Probab=98.23 E-value=3.8e-06 Score=61.58 Aligned_cols=68 Identities=29% Similarity=0.452 Sum_probs=57.3
Q ss_pred CCCccEEEecccCCCCCeEEEEECCCChhhhCCCCCCCEEEEECCEeCCCCCHHHHHHHHhC--CCCeEEEE
Q psy5188 37 CEAWGFRLTGGRDFGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIG--SGNTLTLQ 106 (109)
Q Consensus 37 ~~~~G~~~~~~~~~~~~~~V~~v~~~~~a~~~Gl~~gD~I~~vng~~v~~~~~~~~~~~~~~--~~~~v~l~ 106 (109)
+..+|+.+.||.+- +++|.+|..++||++.||+.||+|+.||..++.++..+++...+.. +|..+++.
T Consensus 416 GdSvGLRLAGGNDV--GIFVaGvqegspA~~eGlqEGDQIL~VN~vdF~nl~REeAVlfLL~lPkGEevtil 485 (1027)
T KOG3580|consen 416 GDSVGLRLAGGNDV--GIFVAGVQEGSPAEQEGLQEGDQILKVNTVDFRNLVREEAVLFLLELPKGEEVTIL 485 (1027)
T ss_pred CCeeeeEeccCCce--eEEEeecccCCchhhccccccceeEEeccccchhhhHHHHHHHHhcCCCCcEEeeh
Confidence 46788899888764 5899999999999999999999999999999999988888777654 36666553
No 41
>PF04495 GRASP55_65: GRASP55/65 PDZ-like domain ; InterPro: IPR007583 GRASP55 (Golgi reassembly stacking protein of 55 kDa) and GRASP65 (a 65 kDa) protein are highly homologous. GRASP55 is a component of the Golgi stacking machinery. GRASP65, an N-ethylmaleimide-sensitive membrane protein required for the stacking of Golgi cisternae in a cell-free system [].; PDB: 3RLE_A 4EDJ_A.
Probab=98.22 E-value=2.4e-05 Score=47.70 Aligned_cols=79 Identities=20% Similarity=0.203 Sum_probs=47.7
Q ss_pred EEEEEEecC----CCCccEEEecccCC---CCCeEEEEECCCChhhhCCCCC-CCEEEEECCEeCCCCCHHHHHHHHhC-
Q psy5188 28 EELKLKKLE----CEAWGFRLTGGRDF---GTPLTVLRVTGTSVAEEGGMEV-GDMIVSINGQCTQAMTHVEAQQHIIG- 98 (109)
Q Consensus 28 ~~~~~~~~~----~~~~G~~~~~~~~~---~~~~~V~~v~~~~~a~~~Gl~~-gD~I~~vng~~v~~~~~~~~~~~~~~- 98 (109)
+++.+.... ...+|++++..... .....|..|.++|||+.+||.+ .|.|+.+++....+.+.. ...+..
T Consensus 12 R~v~i~ps~~w~~~g~LG~sv~~~~~~~~~~~~~~Vl~V~p~SPA~~AGL~p~~DyIig~~~~~l~~~~~l--~~~v~~~ 89 (138)
T PF04495_consen 12 REVSIVPSKKWGGQGLLGISVRFESFEGAEEEGWHVLRVAPNSPAAKAGLEPFFDYIIGIDGGLLDDEDDL--FELVEAN 89 (138)
T ss_dssp EEEEE---SSSSSSSSS-EEEEEEE-TTGCCCEEEEEEE-TTSHHHHTT--TTTEEEEEETTCE--STCHH--HHHHHHT
T ss_pred EEEEEccCcccCCCCCCcEEEEEecccccccceEEEeEecCCCHHHHCCccccccEEEEccceecCCHHHH--HHHHHHc
Confidence 555554422 26788888754322 3467899999999999999998 699999999888865443 344443
Q ss_pred CCCeEEEEEE
Q psy5188 99 SGNTLTLQIL 108 (109)
Q Consensus 99 ~~~~v~l~v~ 108 (109)
.+..+.+.|.
T Consensus 90 ~~~~l~L~Vy 99 (138)
T PF04495_consen 90 ENKPLQLYVY 99 (138)
T ss_dssp TTS-EEEEEE
T ss_pred CCCcEEEEEE
Confidence 3677777663
No 42
>KOG3571|consensus
Probab=98.19 E-value=9.9e-06 Score=58.12 Aligned_cols=80 Identities=16% Similarity=0.221 Sum_probs=63.9
Q ss_pred EEEEEEecCC--CCccEEEecccCC--CCCeEEEEECCCChhhhCC-CCCCCEEEEECCEeCCCCCHHHHHHHHhC---C
Q psy5188 28 EELKLKKLEC--EAWGFRLTGGRDF--GTPLTVLRVTGTSVAEEGG-MEVGDMIVSINGQCTQAMTHVEAQQHIIG---S 99 (109)
Q Consensus 28 ~~~~~~~~~~--~~~G~~~~~~~~~--~~~~~V~~v~~~~~a~~~G-l~~gD~I~~vng~~v~~~~~~~~~~~~~~---~ 99 (109)
..+++.+.=. +-+|+++.+.... .++++|..+.+++..+..| +.+||.|+.||...+.+++..++...+++ .
T Consensus 249 nIITV~LnMe~vnfLGiSivgqsn~rgDggIYVgsImkgGAVA~DGRIe~GDMiLQVNevsFENmSNd~AVrvLREaV~~ 328 (626)
T KOG3571|consen 249 NIITVTLNMETVNFLGISIVGQSNARGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNEVSFENMSNDQAVRVLREAVSR 328 (626)
T ss_pred eEEEEEecccccccceeEeecccCcCCCCceEEeeeccCceeeccCccCccceEEEeeecchhhcCchHHHHHHHHHhcc
Confidence 4455555433 6699999885432 3589999999999999999 99999999999999999999999988875 3
Q ss_pred CCeEEEEE
Q psy5188 100 GNTLTLQI 107 (109)
Q Consensus 100 ~~~v~l~v 107 (109)
...++++|
T Consensus 329 ~gPi~ltv 336 (626)
T KOG3571|consen 329 PGPIKLTV 336 (626)
T ss_pred CCCeEEEE
Confidence 45566665
No 43
>KOG0609|consensus
Probab=98.13 E-value=2.8e-05 Score=56.16 Aligned_cols=78 Identities=24% Similarity=0.357 Sum_probs=65.7
Q ss_pred EEEEEEecCCCCccEEEecccCCCCCeEEEEECCCChhhhCC-CCCCCEEEEECCEeCCCCCHHHHHHHHhCCCCeEEEE
Q psy5188 28 EELKLKKLECEAWGFRLTGGRDFGTPLTVLRVTGTSVAEEGG-MEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQ 106 (109)
Q Consensus 28 ~~~~~~~~~~~~~G~~~~~~~~~~~~~~V~~v~~~~~a~~~G-l~~gD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~ 106 (109)
+.+.+.+..+.++|.++...... .++|..+..|+.+.+.| |..||+|.++||..+.+..-.+...+++...+.+++.
T Consensus 124 riv~i~k~~~eplG~Tik~~e~~--~~~vARI~~GG~~~r~glL~~GD~i~EvNGi~v~~~~~~e~q~~l~~~~G~itfk 201 (542)
T KOG0609|consen 124 RIVRIVKNTGEPLGATIRVEEDT--KVVVARIMHGGMADRQGLLHVGDEILEVNGISVANKSPEELQELLRNSRGSITFK 201 (542)
T ss_pred EEEEEeecCCCccceEEEeccCC--ccEEeeeccCCcchhccceeeccchheecCeecccCCHHHHHHHHHhCCCcEEEE
Confidence 66777776679999998754322 58899999999999999 9999999999999999988888888888877888776
Q ss_pred E
Q psy5188 107 I 107 (109)
Q Consensus 107 v 107 (109)
+
T Consensus 202 i 202 (542)
T KOG0609|consen 202 I 202 (542)
T ss_pred E
Confidence 5
No 44
>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase. Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.
Probab=98.04 E-value=1.1e-05 Score=57.39 Aligned_cols=48 Identities=35% Similarity=0.448 Sum_probs=36.0
Q ss_pred EEEECCCChhhhCCCCCCCEEEEECCEeCCCCCHHHHHHHHhCCCCeEEEEE
Q psy5188 56 VLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQI 107 (109)
Q Consensus 56 V~~v~~~~~a~~~Gl~~gD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v 107 (109)
|..|.++|+|+.+|+++||+|++|||.++.++.. ....+. +..+.+++
T Consensus 2 I~~V~pgSpAe~AGLe~GD~IlsING~~V~Dw~D--~~~~l~--~e~l~L~V 49 (433)
T TIGR03279 2 ISAVLPGSIAEELGFEPGDALVSINGVAPRDLID--YQFLCA--DEELELEV 49 (433)
T ss_pred cCCcCCCCHHHHcCCCCCCEEEEECCEECCCHHH--HHHHhc--CCcEEEEE
Confidence 4568899999999999999999999999986543 222232 24555655
No 45
>TIGR02860 spore_IV_B stage IV sporulation protein B. SpoIVB, the stage IV sporulation protein B of endospore-forming bacteria such as Bacillus subtilis, is a serine proteinase, expressed in the spore (rather than mother cell) compartment, that participates in a proteolytic activation cascade for Sigma-K. It appears to be universal among endospore-forming bacteria and occurs nowhere else.
Probab=98.01 E-value=0.0002 Score=50.74 Aligned_cols=46 Identities=39% Similarity=0.563 Sum_probs=35.8
Q ss_pred CChhhhCCCCCCCEEEEECCEeCCCCCHHHHHHHHhC-CCCeEEEEEEC
Q psy5188 62 TSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIG-SGNTLTLQILR 109 (109)
Q Consensus 62 ~~~a~~~Gl~~gD~I~~vng~~v~~~~~~~~~~~~~~-~~~~v~l~v~r 109 (109)
++||+.+|+++||.|+++||.++.++ .+....+.. .+..+.+++.|
T Consensus 123 ~SPAa~AGLq~GDiIvsING~~V~s~--~DL~~iL~~~~g~~V~LtV~R 169 (402)
T TIGR02860 123 HSPGEEAGIQIGDRILKINGEKIKNM--DDLANLINKAGGEKLTLTIER 169 (402)
T ss_pred CCHHHHcCCCCCCEEEEECCEECCCH--HHHHHHHHhCCCCeEEEEEEE
Confidence 58999999999999999999999865 344444544 36777777765
No 46
>TIGR00054 RIP metalloprotease RseP. A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.
Probab=98.01 E-value=1.4e-05 Score=56.92 Aligned_cols=39 Identities=31% Similarity=0.422 Sum_probs=34.5
Q ss_pred CCeEEEEECCCChhhhCCCCCCCEEEEECCEeCCCCCHH
Q psy5188 52 TPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHV 90 (109)
Q Consensus 52 ~~~~V~~v~~~~~a~~~Gl~~gD~I~~vng~~v~~~~~~ 90 (109)
.+..|..+.+++||+++|+++||.|+++||.++.+..+.
T Consensus 128 ~g~~V~~V~~~SpA~~AGL~~GDvI~~vng~~v~~~~dl 166 (420)
T TIGR00054 128 VGPVIELLDKNSIALEAGIEPGDEILSVNGNKIPGFKDV 166 (420)
T ss_pred CCceeeccCCCCHHHHcCCCCCCEEEEECCEEcCCHHHH
Confidence 356789999999999999999999999999999976443
No 47
>KOG3605|consensus
Probab=97.91 E-value=2.8e-05 Score=57.40 Aligned_cols=86 Identities=24% Similarity=0.334 Sum_probs=66.3
Q ss_pred ccceeeEEEEEEecCCCCccEEEe---cccCCCCCeEEEEECCCChhhhCC-CCCCCEEEEECCEeCCCCCHHHHHHHHh
Q psy5188 22 TKEVMCEELKLKKLECEAWGFRLT---GGRDFGTPLTVLRVTGTSVAEEGG-MEVGDMIVSINGQCTQAMTHVEAQQHII 97 (109)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~G~~~~---~~~~~~~~~~V~~v~~~~~a~~~G-l~~gD~I~~vng~~v~~~~~~~~~~~~~ 97 (109)
.+....+++.+.+.++..+|+.+. ||. -.+++.|.+..+++||+++| |--||+|++|||...-++.....+..++
T Consensus 641 akkE~qKEVvv~K~kGEiLGVViVESGWGS-mLPTVViAnmm~~GpAarsgkLnIGDQiiaING~SLVGLPLstcQs~Ik 719 (829)
T KOG3605|consen 641 AKKENQKEVVLEKHKGEILGVVIVESGWGS-ILPTVVIANMMHGGPAARSGKLNIGDQIMSINGTSLVGLPLSTCQSIIK 719 (829)
T ss_pred hhhcccceeeeecccCceeeEEEEecCccc-cchHHHHHhcccCChhhhcCCccccceeEeecCceeccccHHHHHHHHh
Confidence 444455778888877788888764 232 23467788999999999999 9999999999999999998888888787
Q ss_pred CC--CCeEEEEEE
Q psy5188 98 GS--GNTLTLQIL 108 (109)
Q Consensus 98 ~~--~~~v~l~v~ 108 (109)
.. ...|.++|.
T Consensus 720 ~~KnQT~VkltiV 732 (829)
T KOG3605|consen 720 GLKNQTAVKLNIV 732 (829)
T ss_pred cccccceEEEEEe
Confidence 63 456666653
No 48
>PF14685 Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6F_D 1N6D_C 1N6E_C 1K32_A.
Probab=97.75 E-value=0.00028 Score=39.83 Aligned_cols=56 Identities=25% Similarity=0.272 Sum_probs=34.1
Q ss_pred CeEEEEECCC--------ChhhhCC--CCCCCEEEEECCEeCCCCCHHHHHHHHhCCCCeEEEEEEC
Q psy5188 53 PLTVLRVTGT--------SVAEEGG--MEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQILR 109 (109)
Q Consensus 53 ~~~V~~v~~~--------~~a~~~G--l~~gD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~r 109 (109)
...|.++.++ ||....| +++||.|++|||.++..-.... ..+...++..+.|++.+
T Consensus 13 ~y~I~~I~~gd~~~~~~~sPL~~pGv~v~~GD~I~aInG~~v~~~~~~~-~lL~~~agk~V~Ltv~~ 78 (88)
T PF14685_consen 13 GYRIARIYPGDPWNPNARSPLAQPGVDVREGDYILAINGQPVTADANPY-RLLEGKAGKQVLLTVNR 78 (88)
T ss_dssp EEEEEEE-BS-TTSSS-B-GGGGGS----TT-EEEEETTEE-BTTB-HH-HHHHTTTTSEEEEEEE-
T ss_pred EEEEEEEeCCCCCCccccCCccCCCCCCCCCCEEEEECCEECCCCCCHH-HHhcccCCCEEEEEEec
Confidence 4567777664 5666767 6799999999999998643321 23344568899998864
No 49
>COG0265 DegQ Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.70 E-value=0.00018 Score=50.02 Aligned_cols=58 Identities=28% Similarity=0.447 Sum_probs=44.4
Q ss_pred CCeEEEEECCCChhhhCCCCCCCEEEEECCEeCCCCCHHHHHHHHhCCCCeEEEEEEC
Q psy5188 52 TPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQILR 109 (109)
Q Consensus 52 ~~~~V~~v~~~~~a~~~Gl~~gD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~r 109 (109)
.++.|..+.+++|++++|++.||.|+++||.++.+.............+..+.+++.|
T Consensus 270 ~G~~V~~v~~~spa~~agi~~Gdii~~vng~~v~~~~~l~~~v~~~~~g~~v~~~~~r 327 (347)
T COG0265 270 AGAVVLGVLPGSPAAKAGIKAGDIITAVNGKPVASLSDLVAAVASNRPGDEVALKLLR 327 (347)
T ss_pred CceEEEecCCCChHHHcCCCCCCEEEEECCEEccCHHHHHHHHhccCCCCEEEEEEEE
Confidence 3588999999999999999999999999999999754433222222347777777654
No 50
>KOG3129|consensus
Probab=97.66 E-value=0.00022 Score=46.07 Aligned_cols=57 Identities=19% Similarity=0.270 Sum_probs=40.6
Q ss_pred CeEEEEECCCChhhhCCCCCCCEEEEECCEeCCCCCHHHHHHH-HhC-CCCeEEEEEEC
Q psy5188 53 PLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQH-IIG-SGNTLTLQILR 109 (109)
Q Consensus 53 ~~~V~~v~~~~~a~~~Gl~~gD~I~~vng~~v~~~~~~~~~~~-~~~-~~~~v~l~v~r 109 (109)
-++|..|.++|||..+||+.||.|+.+++..-.+......... .+. .+..+.+++.|
T Consensus 140 Fa~V~sV~~~SPA~~aGl~~gD~il~fGnV~sgn~~~lq~i~~~v~~~e~~~v~v~v~R 198 (231)
T KOG3129|consen 140 FAVVDSVVPGSPADEAGLCVGDEILKFGNVHSGNFLPLQNIAAVVQSNEDQIVSVTVIR 198 (231)
T ss_pred eEEEeecCCCChhhhhCcccCceEEEecccccccchhHHHHHHHHHhccCcceeEEEec
Confidence 3678999999999999999999999998887776543322222 222 25556666544
No 51
>COG3975 Predicted protease with the C-terminal PDZ domain [General function prediction only]
Probab=97.44 E-value=0.00068 Score=49.28 Aligned_cols=42 Identities=26% Similarity=0.296 Sum_probs=35.1
Q ss_pred CCccEEEecccCCCCCeEEEEECCCChhhhCCCCCCCEEEEECCE
Q psy5188 38 EAWGFRLTGGRDFGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQ 82 (109)
Q Consensus 38 ~~~G~~~~~~~~~~~~~~V~~v~~~~~a~~~Gl~~gD~I~~vng~ 82 (109)
..+|..+.... ....|..|.++|||..+|+.+||.|+++||.
T Consensus 451 ~~LGl~v~~~~---g~~~i~~V~~~gPA~~AGl~~Gd~ivai~G~ 492 (558)
T COG3975 451 YYLGLKVKSEG---GHEKITFVFPGGPAYKAGLSPGDKIVAINGI 492 (558)
T ss_pred cccceEecccC---CeeEEEecCCCChhHhccCCCccEEEEEcCc
Confidence 46787765322 2568999999999999999999999999999
No 52
>PRK09681 putative type II secretion protein GspC; Provisional
Probab=97.29 E-value=0.0012 Score=44.62 Aligned_cols=51 Identities=20% Similarity=0.279 Sum_probs=36.3
Q ss_pred EEECCCChh---hhCCCCCCCEEEEECCEeCCCCCHHHHHHHHhC--CCCeEEEEEEC
Q psy5188 57 LRVTGTSVA---EEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIG--SGNTLTLQILR 109 (109)
Q Consensus 57 ~~v~~~~~a---~~~Gl~~gD~I~~vng~~v~~~~~~~~~~~~~~--~~~~v~l~v~r 109 (109)
+.+.|+..+ .++||++||.+++|||.++.+.... ..++++ ....+.++|+|
T Consensus 209 Yrl~Pgkd~~lF~~~GLq~GDva~sING~dL~D~~qa--~~l~~~L~~~tei~ltVeR 264 (276)
T PRK09681 209 YAVKPGADRSLFDASGFKEGDIAIALNQQDFTDPRAM--IALMRQLPSMDSIQLTVLR 264 (276)
T ss_pred EEECCCCcHHHHHHcCCCCCCEEEEeCCeeCCCHHHH--HHHHHHhccCCeEEEEEEE
Confidence 556666543 4689999999999999999865433 233332 35788888886
No 53
>KOG3532|consensus
Probab=97.26 E-value=0.0018 Score=48.71 Aligned_cols=63 Identities=21% Similarity=0.345 Sum_probs=46.3
Q ss_pred CCccEEEecccCCCCCeEEEEECCCChhhhCCCCCCCEEEEECCEeCCCCCHHHHHHHHhCCCCeEE
Q psy5188 38 EAWGFRLTGGRDFGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLT 104 (109)
Q Consensus 38 ~~~G~~~~~~~~~~~~~~V~~v~~~~~a~~~Gl~~gD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~ 104 (109)
.++|+.+.... ...+.|..|.++++|.++.+++||.+++|||.|+.+ ..++...++.....+.
T Consensus 386 ~~ig~vf~~~~--~~~v~v~tv~~ns~a~k~~~~~gdvlvai~~~pi~s--~~q~~~~~~s~~~~~~ 448 (1051)
T KOG3532|consen 386 SPIGLVFDKNT--NRAVKVCTVEDNSLADKAAFKPGDVLVAINNVPIRS--ERQATRFLQSTTGDLT 448 (1051)
T ss_pred CceeEEEecCC--ceEEEEEEecCCChhhHhcCCCcceEEEecCccchh--HHHHHHHHHhcccceE
Confidence 55777664322 235788999999999999999999999999999985 3455555665434443
No 54
>KOG3605|consensus
Probab=97.16 E-value=0.0011 Score=49.40 Aligned_cols=55 Identities=31% Similarity=0.503 Sum_probs=48.2
Q ss_pred CCccEEEecccCCCCCeEEEEECCCChhhhCCCCCCCEEEEECCEeCCCCCHHHHHHHHhCC
Q psy5188 38 EAWGFRLTGGRDFGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGS 99 (109)
Q Consensus 38 ~~~G~~~~~~~~~~~~~~V~~v~~~~~a~~~Gl~~gD~I~~vng~~v~~~~~~~~~~~~~~~ 99 (109)
-.+||++++| .|-+...|+.|++-|++.|.+|++|||..|-...|+.+..++...
T Consensus 749 yQLGFSVQNG-------iICSLlRGGIAERGGVRVGHRIIEINgQSVVA~pHekIV~lLs~a 803 (829)
T KOG3605|consen 749 YQLGFSVQNG-------IICSLLRGGIAERGGVRVGHRIIEINGQSVVATPHEKIVQLLSNA 803 (829)
T ss_pred hhccceeeCc-------EeehhhcccchhccCceeeeeEEEECCceEEeccHHHHHHHHHHh
Confidence 4589999876 467789999999999999999999999999999999888887654
No 55
>COG3480 SdrC Predicted secreted protein containing a PDZ domain [Signal transduction mechanisms]
Probab=97.03 E-value=0.0026 Score=43.67 Aligned_cols=56 Identities=21% Similarity=0.292 Sum_probs=40.4
Q ss_pred CeEEEEECCCChhhhCCCCCCCEEEEECCEeCCCCCHHHHHHHHhCCCCeEEEEEEC
Q psy5188 53 PLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQILR 109 (109)
Q Consensus 53 ~~~V~~v~~~~~a~~~Gl~~gD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~r 109 (109)
++++..+..++++... |+.||.|+++||.++.+.........-+..|..+++.+.|
T Consensus 131 gvyv~~v~~~~~~~gk-l~~gD~i~avdg~~f~s~~e~i~~v~~~k~Gd~VtI~~~r 186 (342)
T COG3480 131 GVYVLSVIDNSPFKGK-LEAGDTIIAVDGEPFTSSDELIDYVSSKKPGDEVTIDYER 186 (342)
T ss_pred eEEEEEccCCcchhce-eccCCeEEeeCCeecCCHHHHHHHHhccCCCCeEEEEEEe
Confidence 4566677777777655 9999999999999999654333222223459999998875
No 56
>KOG1421|consensus
Probab=96.81 E-value=0.0048 Score=46.49 Aligned_cols=54 Identities=30% Similarity=0.433 Sum_probs=42.9
Q ss_pred CeEEEEECCCChhhhCCCCCCCEEEEECCEeCCCCCHHHHHHHHhC-CCCeEEEEEEC
Q psy5188 53 PLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIG-SGNTLTLQILR 109 (109)
Q Consensus 53 ~~~V~~v~~~~~a~~~Gl~~gD~I~~vng~~v~~~~~~~~~~~~~~-~~~~v~l~v~r 109 (109)
-+.|..+.+++|+++. |++||.++.+|+.-+.++ ..+.+.+.+ .++.+.|++.|
T Consensus 304 mLvV~~vL~~gpa~k~-Le~GDillavN~t~l~df--~~l~~iLDegvgk~l~LtI~R 358 (955)
T KOG1421|consen 304 MLVVETVLPEGPAEKK-LEPGDILLAVNSTCLNDF--EALEQILDEGVGKNLELTIQR 358 (955)
T ss_pred eEEEEEeccCCchhhc-cCCCcEEEEEcceehHHH--HHHHHHHhhccCceEEEEEEe
Confidence 3567899999999998 999999999998887643 344455544 48889998876
No 57
>KOG0606|consensus
Probab=96.62 E-value=0.0057 Score=48.13 Aligned_cols=53 Identities=34% Similarity=0.528 Sum_probs=46.4
Q ss_pred EEEEECCCChhhhCCCCCCCEEEEECCEeCCCCCHHHHHHHHhCCCCeEEEEE
Q psy5188 55 TVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQI 107 (109)
Q Consensus 55 ~V~~v~~~~~a~~~Gl~~gD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v 107 (109)
.|..|..++||..+|++++|.|+-+||+++.++.+.+...++...+..+.+.+
T Consensus 661 ~v~sv~egsPA~~agls~~DlIthvnge~v~gl~H~ev~~Lll~~gn~v~~~t 713 (1205)
T KOG0606|consen 661 SVGSVEEGSPAFEAGLSAGDLITHVNGEPVHGLVHTEVMELLLKSGNKVTLRT 713 (1205)
T ss_pred eeeeecCCCCccccCCCccceeEeccCcccchhhHHHHHHHHHhcCCeeEEEe
Confidence 36789999999999999999999999999999999998888877677766654
No 58
>KOG1738|consensus
Probab=95.80 E-value=0.027 Score=41.99 Aligned_cols=68 Identities=16% Similarity=0.219 Sum_probs=51.4
Q ss_pred CCccEEEecccCCCCCeEEEEECCCChhhhCC-CCCCCEEEEECCEeCCCCCHHHHHHHHhCCCCeEEEEE
Q psy5188 38 EAWGFRLTGGRDFGTPLTVLRVTGTSVAEEGG-MEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQI 107 (109)
Q Consensus 38 ~~~G~~~~~~~~~~~~~~V~~v~~~~~a~~~G-l~~gD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v 107 (109)
.++|+.+... ..+...|..+..++||..++ +..||+++.+|+..+.++........+.+...-+.+++
T Consensus 213 eglg~~I~Ss--ydg~h~~s~~~e~Spad~~~kI~dgdEv~qiN~qtvVgwqlk~vV~sL~~~~sgi~l~l 281 (638)
T KOG1738|consen 213 EGLGLYIDSS--YDGPHVTSKIFEQSPADYRQKILDGDEVLQINEQTVVGWQLKVVVSSLRETPAGIELTL 281 (638)
T ss_pred cCCceEEeee--cCCceeccccccCChHHHhhcccCccceeeecccccccchhHhHHhhcccCcccceeee
Confidence 5678776543 33457789999999999998 99999999999999988877766666665444444443
No 59
>KOG1320|consensus
Probab=95.73 E-value=0.057 Score=39.31 Aligned_cols=45 Identities=24% Similarity=0.357 Sum_probs=37.3
Q ss_pred CeEEEEECCCChhhhCCCCCCCEEEEECCEeCCCCCHHHHHHHHhCC
Q psy5188 53 PLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGS 99 (109)
Q Consensus 53 ~~~V~~v~~~~~a~~~Gl~~gD~I~~vng~~v~~~~~~~~~~~~~~~ 99 (109)
.+.+..|.+++++...++.+||+|.++||.++.+..+. ..++..+
T Consensus 399 ~v~is~Vlp~~~~~~~~~~~g~~V~~vng~~V~n~~~l--~~~i~~~ 443 (473)
T KOG1320|consen 399 LVLVSQVLPGSINGGYGLKPGDQVVKVNGKPVKNLKHL--YELIEEC 443 (473)
T ss_pred EEEEEEeccCCCcccccccCCCEEEEECCEEeechHHH--HHHHHhc
Confidence 36678999999999999999999999999999986544 3455554
No 60
>COG3031 PulC Type II secretory pathway, component PulC [Intracellular trafficking and secretion]
Probab=95.29 E-value=0.14 Score=34.22 Aligned_cols=46 Identities=22% Similarity=0.267 Sum_probs=31.2
Q ss_pred CChhhhCCCCCCCEEEEECCEeCCCCCHHHHHHHHhC--CCCeEEEEEEC
Q psy5188 62 TSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIG--SGNTLTLQILR 109 (109)
Q Consensus 62 ~~~a~~~Gl~~gD~I~~vng~~v~~~~~~~~~~~~~~--~~~~v~l~v~r 109 (109)
++.=+..||++||+.+++|+..+.+- .+...+++. .-.++.+++.|
T Consensus 217 ~slF~~sglq~GDIavaiNnldltdp--~~m~~llq~l~~m~s~qlTv~R 264 (275)
T COG3031 217 GSLFYKSGLQRGDIAVAINNLDLTDP--EDMFRLLQMLRNMPSLQLTVIR 264 (275)
T ss_pred cchhhhhcCCCcceEEEecCcccCCH--HHHHHHHHhhhcCcceEEEEEe
Confidence 44556789999999999999999863 233333332 23566777765
No 61
>KOG3938|consensus
Probab=94.96 E-value=0.062 Score=36.33 Aligned_cols=77 Identities=27% Similarity=0.358 Sum_probs=55.5
Q ss_pred EEEEEEecCCCCccEEEecccCCCCCeEEEEECCCChhhhCC-CCCCCEEEEECCEeCCCCCHHHHHHHHhCC--CCeEE
Q psy5188 28 EELKLKKLECEAWGFRLTGGRDFGTPLTVLRVTGTSVAEEGG-MEVGDMIVSINGQCTQAMTHVEAQQHIIGS--GNTLT 104 (109)
Q Consensus 28 ~~~~~~~~~~~~~G~~~~~~~~~~~~~~V~~v~~~~~a~~~G-l~~gD~I~~vng~~v~~~~~~~~~~~~~~~--~~~v~ 104 (109)
+++.+.+ ....+|+++... ...-.+|..+.++|.-.+.- .+.||-|-+|||+.+-++.|.+....++.- +..++
T Consensus 128 kEv~v~K-sedalGlTITDN--G~GyAFIKrIkegsvidri~~i~VGd~IEaiNge~ivG~RHYeVArmLKel~rge~ft 204 (334)
T KOG3938|consen 128 KEVEVVK-SEDALGLTITDN--GAGYAFIKRIKEGSVIDRIEAICVGDHIEAINGESIVGKRHYEVARMLKELPRGETFT 204 (334)
T ss_pred eeEEEEe-cccccceEEeeC--CcceeeeEeecCCchhhhhhheeHHhHHHhhcCccccchhHHHHHHHHHhcccCCeeE
Confidence 4455543 225678776421 11236788899998766655 999999999999999999999999988863 66666
Q ss_pred EEE
Q psy5188 105 LQI 107 (109)
Q Consensus 105 l~v 107 (109)
+.+
T Consensus 205 lrL 207 (334)
T KOG3938|consen 205 LRL 207 (334)
T ss_pred EEe
Confidence 543
No 62
>COG0750 Predicted membrane-associated Zn-dependent proteases 1 [Cell envelope biogenesis, outer membrane]
Probab=93.94 E-value=0.24 Score=34.72 Aligned_cols=34 Identities=29% Similarity=0.408 Sum_probs=29.7
Q ss_pred EEEECCCChhhhCCCCCCCEEEEECCEeCCCCCH
Q psy5188 56 VLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTH 89 (109)
Q Consensus 56 V~~v~~~~~a~~~Gl~~gD~I~~vng~~v~~~~~ 89 (109)
+..+..++++..+|++.||.++++|+.++.++..
T Consensus 133 ~~~v~~~s~a~~a~l~~Gd~iv~~~~~~i~~~~~ 166 (375)
T COG0750 133 VGEVAPKSAAALAGLRPGDRIVAVDGEKVASWDD 166 (375)
T ss_pred eeecCCCCHHHHcCCCCCCEEEeECCEEccCHHH
Confidence 3468889999999999999999999999997643
No 63
>PF12812 PDZ_1: PDZ-like domain
Probab=92.93 E-value=0.79 Score=25.17 Aligned_cols=35 Identities=34% Similarity=0.480 Sum_probs=28.2
Q ss_pred eEEEEECCCChhhhCCCCCCCEEEEECCEeCCCCC
Q psy5188 54 LTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMT 88 (109)
Q Consensus 54 ~~V~~v~~~~~a~~~Gl~~gD~I~~vng~~v~~~~ 88 (109)
..+.....++++...|+..|-.|.+||+.++.++.
T Consensus 32 gv~v~~~~g~~~~~~~i~~g~iI~~Vn~kpt~~Ld 66 (78)
T PF12812_consen 32 GVYVAVSGGSLAFAGGISKGFIITSVNGKPTPDLD 66 (78)
T ss_pred EEEEEecCCChhhhCCCCCCeEEEeECCcCCcCHH
Confidence 45556667777777679999999999999999753
No 64
>KOG3834|consensus
Probab=90.80 E-value=0.66 Score=33.51 Aligned_cols=55 Identities=27% Similarity=0.321 Sum_probs=41.8
Q ss_pred CeEEEEECCCChhhhCCCCC-CCEEEEECCEeCCCCCHHHHHHHHhCCCCeEEEEEE
Q psy5188 53 PLTVLRVTGTSVAEEGGMEV-GDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQIL 108 (109)
Q Consensus 53 ~~~V~~v~~~~~a~~~Gl~~-gD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~ 108 (109)
+..|.+|..+++++++|+.+ =|.|++|||..+..- .+....+++.....+++++.
T Consensus 16 g~hvlkVqedSpa~~aglepffdFIvSI~g~rL~~d-nd~Lk~llk~~sekVkltv~ 71 (462)
T KOG3834|consen 16 GYHVLKVQEDSPAHKAGLEPFFDFIVSINGIRLNKD-NDTLKALLKANSEKVKLTVY 71 (462)
T ss_pred eEEEEEeecCChHHhcCcchhhhhhheeCcccccCc-hHHHHHHHHhcccceEEEEE
Confidence 56788999999999999665 799999999999743 44555566665444777763
No 65
>KOG3834|consensus
Probab=88.64 E-value=4 Score=29.71 Aligned_cols=78 Identities=19% Similarity=0.123 Sum_probs=45.2
Q ss_pred EEEEEEecCCCC---ccEEEecccCC---CCCeEEEEECCCChhhhCCCC-CCCEEEEECCEeCCCCCHHHHHHHHhC-C
Q psy5188 28 EELKLKKLECEA---WGFRLTGGRDF---GTPLTVLRVTGTSVAEEGGME-VGDMIVSINGQCTQAMTHVEAQQHIIG-S 99 (109)
Q Consensus 28 ~~~~~~~~~~~~---~G~~~~~~~~~---~~~~~V~~v~~~~~a~~~Gl~-~gD~I~~vng~~v~~~~~~~~~~~~~~-~ 99 (109)
+++.+......+ +|++++.-... ..-..|..|.+++||+.+||. -.|-|+.+-..-.. ..++.+.++.. .
T Consensus 79 R~v~I~ps~~wggqllGvsvrFcsf~~A~~~vwHvl~V~p~SPaalAgl~~~~DYivG~~~~~~~--~~eDl~~lIeshe 156 (462)
T KOG3834|consen 79 RIVEIVPSNNWGGQLLGVSVRFCSFDGAVESVWHVLSVEPNSPAALAGLRPYTDYIVGIWDAVMH--EEEDLFTLIESHE 156 (462)
T ss_pred EEEEecccccccccccceEEEeccCccchhheeeeeecCCCCHHHhcccccccceEecchhhhcc--chHHHHHHHHhcc
Confidence 445554433333 77776643221 123567889999999999977 57888777322222 23444555543 3
Q ss_pred CCeEEEEE
Q psy5188 100 GNTLTLQI 107 (109)
Q Consensus 100 ~~~v~l~v 107 (109)
++.+.+-|
T Consensus 157 ~kpLklyV 164 (462)
T KOG3834|consen 157 GKPLKLYV 164 (462)
T ss_pred CCCcceeE
Confidence 56665544
No 66
>KOG2921|consensus
Probab=85.78 E-value=1 Score=32.42 Aligned_cols=36 Identities=31% Similarity=0.415 Sum_probs=29.3
Q ss_pred CeEEEEECCCChhhh-CCCCCCCEEEEECCEeCCCCC
Q psy5188 53 PLTVLRVTGTSVAEE-GGMEVGDMIVSINGQCTQAMT 88 (109)
Q Consensus 53 ~~~V~~v~~~~~a~~-~Gl~~gD~I~~vng~~v~~~~ 88 (109)
++.|..|...||+.. -||.+||.|.++||.++.+.+
T Consensus 221 gV~Vtev~~~Spl~gprGL~vgdvitsldgcpV~~v~ 257 (484)
T KOG2921|consen 221 GVTVTEVPSVSPLFGPRGLSVGDVITSLDGCPVHKVS 257 (484)
T ss_pred eEEEEeccccCCCcCcccCCccceEEecCCcccCCHH
Confidence 577888887777654 379999999999999999753
No 67
>KOG4407|consensus
Probab=85.64 E-value=0.43 Score=39.09 Aligned_cols=54 Identities=19% Similarity=0.242 Sum_probs=44.3
Q ss_pred CeEEEEECCCChhhhCCCCCCCEEEEECCEeCCCCCHHHHHHHHhCCCCeEEEE
Q psy5188 53 PLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQ 106 (109)
Q Consensus 53 ~~~V~~v~~~~~a~~~Gl~~gD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~ 106 (109)
++++..|.+++|+..+.|+.||.++.+|..++..+...+++..+++....+++.
T Consensus 144 T~~~~eV~~n~~~~~a~LQ~~~~V~~v~~q~~A~i~~s~~~S~~~qt~~~~~~~ 197 (1973)
T KOG4407|consen 144 TIFIKEVQANGPAHYANLQTGDRVLMVNNQPIAGIAYSTIVSMIKQTPAVLTLH 197 (1973)
T ss_pred hhhhhhhccCChhHHHhhhccceeEEeecCcccchhhhhhhhhhccCCCCCCce
Confidence 456778999999999999999999999999999888888887777654444443
No 68
>PF11874 DUF3394: Domain of unknown function (DUF3394); InterPro: IPR021814 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 190 amino acids in length. This domain is found associated with PF06808 from PFAM.
Probab=84.40 E-value=2.9 Score=26.90 Aligned_cols=38 Identities=26% Similarity=0.217 Sum_probs=30.1
Q ss_pred CccEEEecccCCCCCeEEEEECCCChhhhCCCCCCCEEEEE
Q psy5188 39 AWGFRLTGGRDFGTPLTVLRVTGTSVAEEGGMEVGDMIVSI 79 (109)
Q Consensus 39 ~~G~~~~~~~~~~~~~~V~~v~~~~~a~~~Gl~~gD~I~~v 79 (109)
..|+.+.... ..+.|..+..||+|+++|+..+.+|.++
T Consensus 112 ~~GL~l~~e~---~~~~Vd~v~fgS~A~~~g~d~d~~I~~v 149 (183)
T PF11874_consen 112 AAGLTLMEEG---GKVIVDEVEFGSPAEKAGIDFDWEITEV 149 (183)
T ss_pred hCCCEEEeeC---CEEEEEecCCCCHHHHcCCCCCcEEEEE
Confidence 3576665322 2578899999999999999999999887
No 69
>KOG0792|consensus
Probab=80.78 E-value=0.82 Score=36.56 Aligned_cols=62 Identities=32% Similarity=0.449 Sum_probs=47.1
Q ss_pred CCCccEEEecccCCC-----CCeEEEEEC-------------CCChhhhCC--CCCCCEEEEECCEeCCCCCHHHHHHHH
Q psy5188 37 CEAWGFRLTGGRDFG-----TPLTVLRVT-------------GTSVAEEGG--MEVGDMIVSINGQCTQAMTHVEAQQHI 96 (109)
Q Consensus 37 ~~~~G~~~~~~~~~~-----~~~~V~~v~-------------~~~~a~~~G--l~~gD~I~~vng~~v~~~~~~~~~~~~ 96 (109)
...+||.+.++.+.. .++.+..+. |++++..++ +..||+.+++||+.+....+......+
T Consensus 715 ~g~~g~~~~g~~dq~~~~~~~p~a~sRv~~~~p~~~~~~~~~p~s~~d~~~P~~~e~dq~~~ingr~~~~~~~~~~vs~i 794 (1144)
T KOG0792|consen 715 PGRFGFNLKGGLDQLQNLLNEPVAVSRVAGPGPLKMNGKLSEPESTADDCTPRLNEGDQVTSINGRDVSESEHDQVVSLI 794 (1144)
T ss_pred CccccccccchhhhhhccccccHHHHhhcccccchhcccccCCCCCccccccCCCcccceeeecccccccccccchHHHH
Confidence 467899888876643 456666777 888887776 888999999999999877666655555
Q ss_pred hC
Q psy5188 97 IG 98 (109)
Q Consensus 97 ~~ 98 (109)
+.
T Consensus 795 rs 796 (1144)
T KOG0792|consen 795 RS 796 (1144)
T ss_pred hh
Confidence 54
No 70
>KOG1421|consensus
Probab=71.57 E-value=20 Score=28.11 Aligned_cols=38 Identities=18% Similarity=0.173 Sum_probs=33.6
Q ss_pred CCCCeEEEEECCCChhhhCCCCCCCEEEEECCEeCCCCC
Q psy5188 50 FGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMT 88 (109)
Q Consensus 50 ~~~~~~V~~v~~~~~a~~~Gl~~gD~I~~vng~~v~~~~ 88 (109)
.+.++++.....++||.+ ++.+...|..+||+.+.++.
T Consensus 860 lp~gvyvt~rg~gspalq-~l~aa~fitavng~~t~~ld 897 (955)
T KOG1421|consen 860 LPEGVYVTSRGYGSPALQ-MLRAAHFITAVNGHDTNTLD 897 (955)
T ss_pred cCCceEEeecccCChhHh-hcchheeEEEecccccCcHH
Confidence 356899999999999999 79999999999999998653
No 71
>KOG4407|consensus
Probab=68.55 E-value=7.1 Score=32.65 Aligned_cols=32 Identities=9% Similarity=0.083 Sum_probs=26.1
Q ss_pred EEEECCCChhhhCCCCCCCEEEEECCEeCCCC
Q psy5188 56 VLRVTGTSVAEEGGMEVGDMIVSINGQCTQAM 87 (109)
Q Consensus 56 V~~v~~~~~a~~~Gl~~gD~I~~vng~~v~~~ 87 (109)
+..+..++++..+|+..++.|..|+|..+.+.
T Consensus 100 ~~Q~~s~~~~~nsG~~s~~~v~~itG~e~~~~ 131 (1973)
T KOG4407|consen 100 WPQEASSAAGSNSGSSSSVGVAGITGLEPTSP 131 (1973)
T ss_pred cchhcccCcccccCcccccceeeecccccCCC
Confidence 34566677888899999999999999987654
No 72
>COG5233 GRH1 Peripheral Golgi membrane protein [Intracellular trafficking and secretion]
Probab=67.26 E-value=4.1 Score=28.62 Aligned_cols=32 Identities=50% Similarity=0.636 Sum_probs=28.3
Q ss_pred eEEEEECCCChhhhCCCCCCCEEEEECCEeCC
Q psy5188 54 LTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQ 85 (109)
Q Consensus 54 ~~V~~v~~~~~a~~~Gl~~gD~I~~vng~~v~ 85 (109)
+.+..|.+.+||+.+|+..||-|+.+|+.++.
T Consensus 65 l~~lrv~~~~~~e~~~~~~~dyilg~n~Dp~~ 96 (417)
T COG5233 65 LEVLRVNPESPAEKAGMVVGDYILGINEDPLR 96 (417)
T ss_pred hhheeccccChhHhhccccceeEEeecCCcHH
Confidence 45678899999999999999999999988774
No 73
>KOG1703|consensus
Probab=65.73 E-value=3.4 Score=30.41 Aligned_cols=55 Identities=49% Similarity=0.901 Sum_probs=41.3
Q ss_pred CccEEEecccCCCCCeEEEEECCCChhhhCCCCCCCEEEEECCEeCCCCCHHHHHH
Q psy5188 39 AWGFRLTGGRDFGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQ 94 (109)
Q Consensus 39 ~~G~~~~~~~~~~~~~~V~~v~~~~~a~~~Gl~~gD~I~~vng~~v~~~~~~~~~~ 94 (109)
+|||...++ ++..++.+..+.+++.++...+..+|.+..+++..-..+.+.+...
T Consensus 9 ~~~~r~~~~-~~~~~l~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 63 (479)
T KOG1703|consen 9 PWGFRLQGG-DFLQPLRILRVTPGGKAADAELDPGDIIAAIDGENEETMTHLEAQN 63 (479)
T ss_pred Cceeeeccc-ccccccceeccCCCCccccccccccccccccccccccccccccccC
Confidence 677776654 5555688888999999999999999999999987665554444333
No 74
>KOG4371|consensus
Probab=64.22 E-value=17 Score=29.83 Aligned_cols=41 Identities=27% Similarity=0.546 Sum_probs=34.9
Q ss_pred CCCCCCEEEEECCEeCCCCCHHHHHHHHhCCCCeEEEEEEC
Q psy5188 69 GMEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQILR 109 (109)
Q Consensus 69 Gl~~gD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~r 109 (109)
.+..||.+.-+||+.+....+.++...++..+..+.+-+.|
T Consensus 1186 d~~~g~~l~~~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~r 1226 (1332)
T KOG4371|consen 1186 DIRVGDVLLYVNGIAVEGKVHQEVVAMLRGGGDRVVLGVQR 1226 (1332)
T ss_pred CcchhhhhhhccceeeechhhHHHHHHHhccCceEEEEeec
Confidence 38999999999999999888888888888878888877765
No 75
>KOG4371|consensus
Probab=58.60 E-value=25 Score=28.86 Aligned_cols=58 Identities=22% Similarity=0.373 Sum_probs=40.1
Q ss_pred ecCCCCccEEEecccCCCCCeEEEEECCCChhhhCC-CCCCCEEEEECCEeCCCCCHHHH
Q psy5188 34 KLECEAWGFRLTGGRDFGTPLTVLRVTGTSVAEEGG-MEVGDMIVSINGQCTQAMTHVEA 92 (109)
Q Consensus 34 ~~~~~~~G~~~~~~~~~~~~~~V~~v~~~~~a~~~G-l~~gD~I~~vng~~v~~~~~~~~ 92 (109)
+....++|+.+... ....++++..+...+.|...| ++.||.+...+|.++....-.+.
T Consensus 1253 ~~p~~~~~~~~~~~-~~s~~~~~~~~~~~~~a~~~~~~r~g~~~~~~~~~~~~~~~p~~~ 1311 (1332)
T KOG4371|consen 1253 KKPMATLGLSLAKR-TMSDGIFIRNIAQDSAASSEGTLRVGDRLVSLDGEPVDGFTPATI 1311 (1332)
T ss_pred eccccccccccccc-CcCCceeeecccccccccccccccccceeeccCCccCCCCChHHH
Confidence 33335566654322 123467777777777777777 99999999999999998755543
No 76
>COG1625 Fe-S oxidoreductase, related to NifB/MoaA family [Energy production and conversion]
Probab=48.11 E-value=21 Score=26.03 Aligned_cols=35 Identities=29% Similarity=0.438 Sum_probs=28.9
Q ss_pred EEEEECCCChhhhCCCCCCCEEEEEC-CEeCCCCCH
Q psy5188 55 TVLRVTGTSVAEEGGMEVGDMIVSIN-GQCTQAMTH 89 (109)
Q Consensus 55 ~V~~v~~~~~a~~~Gl~~gD~I~~vn-g~~v~~~~~ 89 (109)
.|..+.+.+.++..|++++|-+..|| +.++..+..
T Consensus 4 ~i~~v~~~~~~d~~Gfe~~~~l~~Vn~~~~~~~c~~ 39 (414)
T COG1625 4 KISKVGGISGADCDGFEEGDYLLKVNPGFGCKDCIP 39 (414)
T ss_pred ceeeccCCCcccccCccccceeeecCCCCCCCcCCC
Confidence 46678888899999999999999999 887776543
No 77
>COG4273 Uncharacterized conserved protein [Function unknown]
Probab=30.33 E-value=30 Score=21.00 Aligned_cols=30 Identities=17% Similarity=0.130 Sum_probs=25.3
Q ss_pred EEEECCCChhhhCCCCCCCEEEEECCEeCC
Q psy5188 56 VLRVTGTSVAEEGGMEVGDMIVSINGQCTQ 85 (109)
Q Consensus 56 V~~v~~~~~a~~~Gl~~gD~I~~vng~~v~ 85 (109)
+..+..+.|+....-+.|+.|+.++|.|..
T Consensus 50 ~agvg~gv~~l~~~arsgrrIlalDGCp~~ 79 (135)
T COG4273 50 TAGVGAGVPALVDAARSGRRILALDGCPLR 79 (135)
T ss_pred eecccCCcHHHHHHhhcCCceEEecCChHH
Confidence 566777888877778899999999999986
No 78
>cd06495 p23_NUDCD3_like p23-like NUD (nuclear distribution) C-like domain found in human NUDC domain-containing protein 3 (NUDCD3) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=27.73 E-value=1.3e+02 Score=17.32 Aligned_cols=33 Identities=15% Similarity=0.366 Sum_probs=23.8
Q ss_pred eeeeeeeeeeee-eeeeecccce-eeEEEEEEecC
Q psy5188 4 LRNYIWDLQFDI-LIQLILTKEV-MCEELKLKKLE 36 (109)
Q Consensus 4 ~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~ 36 (109)
+-+|.|.++.+. .+.+++|... ..+.+.+....
T Consensus 4 ~e~Y~WtQTl~eV~V~i~lp~~~~~~kdv~v~i~~ 38 (102)
T cd06495 4 RENYTWSQDYTDVEVRVPVPKDVVKGRQVSVDLQS 38 (102)
T ss_pred CCceEEEeECCeEEEEEECCCCCccceEEEEEEEc
Confidence 457999999976 6888888763 35667776544
No 79
>COG0260 PepB Leucyl aminopeptidase [Amino acid transport and metabolism]
Probab=27.58 E-value=69 Score=24.01 Aligned_cols=25 Identities=24% Similarity=0.419 Sum_probs=19.1
Q ss_pred CCCChhhhCCCCCCCEEEEECCEeCC
Q psy5188 60 TGTSVAEEGGMEVGDMIVSINGQCTQ 85 (109)
Q Consensus 60 ~~~~~a~~~Gl~~gD~I~~vng~~v~ 85 (109)
..+.|.-.+ .+|||+|.+.||..|+
T Consensus 306 ~ENm~~g~A-~rPGDVits~~GkTVE 330 (485)
T COG0260 306 VENMPSGNA-YRPGDVITSMNGKTVE 330 (485)
T ss_pred eccCCCCCC-CCCCCeEEecCCcEEE
Confidence 334444444 9999999999999886
No 80
>KOG2265|consensus
Probab=25.90 E-value=96 Score=19.97 Aligned_cols=34 Identities=15% Similarity=0.289 Sum_probs=25.2
Q ss_pred eeeeeeeeeeeee-eeeeecccce-eeEEEEEEecC
Q psy5188 3 ALRNYIWDLQFDI-LIQLILTKEV-MCEELKLKKLE 36 (109)
Q Consensus 3 ~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~ 36 (109)
++.+|-|++.+.. .+++++|... ..+.+.+....
T Consensus 17 ~~~~y~W~QtL~EV~i~i~vp~~~~ksk~v~~~Iq~ 52 (179)
T KOG2265|consen 17 DEEKYTWDQTLEEVEIQIPVPPGTAKSKDVHCSIQS 52 (179)
T ss_pred cccceeeeeehhheEEEeecCCCCcccceEEEEeee
Confidence 5678999999965 6888888777 44666666544
No 81
>PRK06531 yajC preprotein translocase subunit YajC; Validated
Probab=24.82 E-value=48 Score=19.62 Aligned_cols=16 Identities=31% Similarity=0.570 Sum_probs=13.2
Q ss_pred hCCCCCCCEEEEECCE
Q psy5188 67 EGGMEVGDMIVSINGQ 82 (109)
Q Consensus 67 ~~Gl~~gD~I~~vng~ 82 (109)
.++|++||.|+..+|.
T Consensus 34 ~~sLk~GD~VvT~GGi 49 (113)
T PRK06531 34 LNAIQKGDEVVTIGGL 49 (113)
T ss_pred HHhcCCCCEEEECCCc
Confidence 3469999999988876
No 82
>PRK05886 yajC preprotein translocase subunit YajC; Validated
Probab=23.52 E-value=58 Score=19.16 Aligned_cols=15 Identities=20% Similarity=0.441 Sum_probs=13.1
Q ss_pred CCCCCCCEEEEECCE
Q psy5188 68 GGMEVGDMIVSINGQ 82 (109)
Q Consensus 68 ~Gl~~gD~I~~vng~ 82 (109)
+.|++||+++..+|.
T Consensus 37 ~~Lk~GD~VvT~gGi 51 (109)
T PRK05886 37 ESLQPGDRVHTTSGL 51 (109)
T ss_pred HhcCCCCEEEECCCe
Confidence 569999999998887
No 83
>TIGR00739 yajC preprotein translocase, YajC subunit. While this protein is part of the preprotein translocase in Escherichia coli, it is not essential for viability or protein secretion. The N-terminus region contains a predicted membrane-spanning region followed by a region consisting almost entirely of residues with charged (acidic, basic, or zwitterionic) side chains. This small protein is about 100 residues in length, and is restricted to bacteria; however, this protein is absent from some lineages, including spirochetes and Mycoplasmas.
Probab=23.21 E-value=63 Score=17.90 Aligned_cols=16 Identities=25% Similarity=0.513 Sum_probs=13.3
Q ss_pred hCCCCCCCEEEEECCE
Q psy5188 67 EGGMEVGDMIVSINGQ 82 (109)
Q Consensus 67 ~~Gl~~gD~I~~vng~ 82 (109)
.+.|++||.++..+|.
T Consensus 35 ~~~L~~Gd~VvT~gGi 50 (84)
T TIGR00739 35 IESLKKGDKVLTIGGI 50 (84)
T ss_pred HHhCCCCCEEEECCCe
Confidence 3459999999998887
No 84
>PRK00913 multifunctional aminopeptidase A; Provisional
Probab=23.07 E-value=97 Score=23.23 Aligned_cols=32 Identities=22% Similarity=0.455 Sum_probs=23.0
Q ss_pred CeEEEEE---CCCChhhhCCCCCCCEEEEECCEeCC
Q psy5188 53 PLTVLRV---TGTSVAEEGGMEVGDMIVSINGQCTQ 85 (109)
Q Consensus 53 ~~~V~~v---~~~~~a~~~Gl~~gD~I~~vng~~v~ 85 (109)
++.|..+ ..+.+...+ .++||.|.+-||..|.
T Consensus 297 ~vnV~~v~~l~ENm~~~~A-~rPgDVi~~~~GkTVE 331 (483)
T PRK00913 297 PVNVVGVVAACENMPSGNA-YRPGDVLTSMSGKTIE 331 (483)
T ss_pred CceEEEEEEeeccCCCCCC-CCCCCEEEECCCcEEE
Confidence 3444443 445555555 9999999999999886
No 85
>PRK02268 hypothetical protein; Provisional
Probab=23.06 E-value=1e+02 Score=19.00 Aligned_cols=22 Identities=27% Similarity=0.323 Sum_probs=15.1
Q ss_pred EEECCCChhhhCCCCCCCEEEE
Q psy5188 57 LRVTGTSVAEEGGMEVGDMIVS 78 (109)
Q Consensus 57 ~~v~~~~~a~~~Gl~~gD~I~~ 78 (109)
.++..+..+...-+++||.|+-
T Consensus 23 ~qv~hgK~apl~RmkpGD~ivy 44 (141)
T PRK02268 23 MQVCHGKAAPLRRMKPGDWIIY 44 (141)
T ss_pred EEeCCCccchhhcCCCCCEEEE
Confidence 3556666666666888888874
No 86
>KOG2531|consensus
Probab=21.65 E-value=1.6e+02 Score=22.19 Aligned_cols=31 Identities=23% Similarity=0.423 Sum_probs=25.3
Q ss_pred CCCeEEEEECCCChhhhCC--CCCCCEEEEECC
Q psy5188 51 GTPLTVLRVTGTSVAEEGG--MEVGDMIVSING 81 (109)
Q Consensus 51 ~~~~~V~~v~~~~~a~~~G--l~~gD~I~~vng 81 (109)
++.|.|.-...+.|+..+| |.++|..++.+-
T Consensus 270 ~p~C~Vv~~tGDNpsslagL~l~~~dl~iSLGT 302 (545)
T KOG2531|consen 270 PPDCKVVPSTGDNPSSLAGLPLRPGDLLISLGT 302 (545)
T ss_pred CCCCEEEecCCCChHHhhCccccCCceEEEecC
Confidence 4568888888888999999 788999888763
No 87
>cd00433 Peptidase_M17 Cytosol aminopeptidase family, N-terminal and catalytic domains. Family M17 contains zinc- and manganese-dependent exopeptidases ( EC 3.4.11.1), including leucine aminopeptidase. They catalyze removal of amino acids from the N-terminus of a protein and play a key role in protein degradation and in the metabolism of biologically active peptides. They do not contain HEXXH motif (which is used as one of the signature patterns to group the peptidase families) in the metal-binding site. The two associated zinc ions and the active site are entirely enclosed within the C-terminal catalytic domain in leucine aminopeptidase. The enzyme is a hexamer, with the catalytic domains clustered around the three-fold axis, and the two trimers related to one another by a two-fold rotation. The N-terminal domain is structurally similar to the ADP-ribose binding Macro domain. This family includes proteins from bacteria, archaea, animals and plants.
Probab=21.01 E-value=1.1e+02 Score=22.84 Aligned_cols=26 Identities=19% Similarity=0.396 Sum_probs=20.2
Q ss_pred ECCCChhhhCCCCCCCEEEEECCEeCC
Q psy5188 59 VTGTSVAEEGGMEVGDMIVSINGQCTQ 85 (109)
Q Consensus 59 v~~~~~a~~~Gl~~gD~I~~vng~~v~ 85 (109)
...+.+...+ .++||+|.+-||..|+
T Consensus 292 ~~EN~is~~A-~rPgDVi~s~~GkTVE 317 (468)
T cd00433 292 LAENMISGNA-YRPGDVITSRSGKTVE 317 (468)
T ss_pred eeecCCCCCC-CCCCCEeEeCCCcEEE
Confidence 3445555555 9999999999999886
No 88
>PRK03760 hypothetical protein; Provisional
Probab=20.98 E-value=84 Score=18.57 Aligned_cols=21 Identities=24% Similarity=0.197 Sum_probs=15.1
Q ss_pred EEEEECCCChhhhCCCCCCCEE
Q psy5188 55 TVLRVTGTSVAEEGGMEVGDMI 76 (109)
Q Consensus 55 ~V~~v~~~~~a~~~Gl~~gD~I 76 (109)
+|..+ +.+-++..|+++||.+
T Consensus 92 ~VLEl-~aG~~~~~gi~~Gd~v 112 (117)
T PRK03760 92 YIIEG-PVGKIRVLKVEVGDEI 112 (117)
T ss_pred EEEEe-CCChHHHcCCCCCCEE
Confidence 44444 4556778889999997
No 89
>PRK05585 yajC preprotein translocase subunit YajC; Validated
Probab=20.91 E-value=69 Score=18.65 Aligned_cols=16 Identities=25% Similarity=0.391 Sum_probs=13.4
Q ss_pred hCCCCCCCEEEEECCE
Q psy5188 67 EGGMEVGDMIVSINGQ 82 (109)
Q Consensus 67 ~~Gl~~gD~I~~vng~ 82 (109)
.+.|++||+++..+|.
T Consensus 50 ~~~Lk~Gd~VvT~gGi 65 (106)
T PRK05585 50 LSSLAKGDEVVTNGGI 65 (106)
T ss_pred HHhcCCCCEEEECCCe
Confidence 3469999999988887
No 90
>PRK05015 aminopeptidase B; Provisional
Probab=20.67 E-value=1.3e+02 Score=22.26 Aligned_cols=25 Identities=20% Similarity=0.457 Sum_probs=19.3
Q ss_pred CCCChhhhCCCCCCCEEEEECCEeCC
Q psy5188 60 TGTSVAEEGGMEVGDMIVSINGQCTQ 85 (109)
Q Consensus 60 ~~~~~a~~~Gl~~gD~I~~vng~~v~ 85 (109)
..+.+...+ .++||+|..-||..|.
T Consensus 244 aENmisg~A-~kpgDVIt~~nGkTVE 268 (424)
T PRK05015 244 AENLISGNA-FKLGDIITYRNGKTVE 268 (424)
T ss_pred cccCCCCCC-CCCCCEEEecCCcEEe
Confidence 345544444 9999999999999887
No 91
>PF07591 PT-HINT: Pretoxin HINT domain; InterPro: IPR011451 This entry represents a cluster of homologous proteins identified in Leptospira interrogans. One member (Q8EZX6 from SWISSPROT) has been predicted to be a phenazine biosynthesis family protein.; PDB: 2JNQ_A 2JMZ_A.
Probab=20.29 E-value=67 Score=19.24 Aligned_cols=15 Identities=27% Similarity=0.674 Sum_probs=10.4
Q ss_pred CCCCCEEEEECCEeC
Q psy5188 70 MEVGDMIVSINGQCT 84 (109)
Q Consensus 70 l~~gD~I~~vng~~v 84 (109)
|++||.|...+|...
T Consensus 77 L~~GD~L~~~~G~~~ 91 (130)
T PF07591_consen 77 LKVGDRLLTADGSWV 91 (130)
T ss_dssp --TTSEEEEE-SSEE
T ss_pred CCCCCEEEcCCCCEE
Confidence 999999999998753
No 92
>COG1862 YajC Preprotein translocase subunit YajC [Intracellular trafficking and secretion]
Probab=20.19 E-value=84 Score=18.07 Aligned_cols=16 Identities=31% Similarity=0.615 Sum_probs=13.3
Q ss_pred CCCCCCCEEEEECCEe
Q psy5188 68 GGMEVGDMIVSINGQC 83 (109)
Q Consensus 68 ~Gl~~gD~I~~vng~~ 83 (109)
+.|+.||+++..+|.-
T Consensus 42 ~sL~kGD~VvT~gGi~ 57 (97)
T COG1862 42 NSLKKGDEVVTIGGIV 57 (97)
T ss_pred HhccCCCEEEEcCCeE
Confidence 4599999999998873
Done!