Query psy5188
Match_columns 109
No_of_seqs 119 out of 1767
Neff 9.7
Searched_HMMs 29240
Date Fri Aug 16 19:35:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5188.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5188hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1rgw_A ZAsp protein; PDZ, cyph 99.7 2.7E-16 9.3E-21 87.4 10.6 81 29-109 2-82 (85)
2 2uzc_A Human pdlim5, PDZ and L 99.7 3.9E-16 1.3E-20 87.4 10.9 81 29-109 4-84 (88)
3 2q3g_A PDZ and LIM domain prot 99.7 2.7E-16 9.1E-21 88.2 10.1 82 28-109 3-84 (89)
4 2pa1_A PDZ and LIM domain prot 99.7 7.7E-16 2.6E-20 86.0 10.6 81 29-109 3-83 (87)
5 2pkt_A PDZ and LIM domain prot 99.7 1.4E-15 4.8E-20 85.6 10.8 81 29-109 4-84 (91)
6 2eeg_A PDZ and LIM domain prot 99.7 8.9E-16 3E-20 87.0 9.6 80 30-109 10-89 (94)
7 1qav_A Alpha-1 syntrophin (res 99.7 1.8E-15 6.1E-20 85.0 10.5 82 28-109 6-88 (90)
8 2i04_A Membrane-associated gua 99.6 9E-15 3.1E-19 81.2 11.1 73 37-109 10-85 (85)
9 4e34_A Golgi-associated PDZ an 99.6 4.8E-15 1.6E-19 82.7 9.8 81 28-108 4-85 (87)
10 1wf7_A Enigma homologue protei 99.6 1.1E-15 3.8E-20 87.9 7.2 81 29-109 6-86 (103)
11 1r6j_A Syntenin 1; PDZ, membra 99.6 7.7E-15 2.6E-19 81.2 10.1 74 28-108 6-79 (82)
12 2ego_A General receptor for ph 99.6 1.2E-14 4E-19 82.6 11.2 82 28-109 6-94 (96)
13 3b76_A E3 ubiquitin-protein li 99.6 1.2E-14 4E-19 85.7 11.1 82 28-109 26-111 (118)
14 3hpk_A Protein interacting wit 99.6 1.8E-14 6.2E-19 85.5 12.0 82 28-109 21-103 (125)
15 1mfg_A ERB-B2 interacting prot 99.6 1.8E-14 6.3E-19 81.6 11.5 80 29-109 4-91 (95)
16 4amh_A Disks large homolog 1; 99.6 1.2E-14 4E-19 84.1 10.8 74 36-109 11-90 (106)
17 2dc2_A GOPC, golgi associated 99.6 6.3E-15 2.1E-19 84.8 9.4 82 28-109 11-93 (103)
18 1ihj_A INAD; intermolecular di 99.6 9.3E-15 3.2E-19 83.2 10.0 82 28-109 7-95 (98)
19 2qg1_A Multiple PDZ domain pro 99.6 2.5E-14 8.4E-19 80.6 11.5 79 30-109 8-87 (92)
20 1n7e_A AMPA receptor interacti 99.6 3.2E-14 1.1E-18 80.9 11.9 80 30-109 7-88 (97)
21 2q9v_A Membrane-associated gua 99.6 7.3E-15 2.5E-19 82.4 9.1 72 38-109 13-87 (90)
22 2fne_A Multiple PDZ domain pro 99.6 4.3E-15 1.5E-19 87.4 8.4 82 28-109 25-111 (117)
23 2w4f_A Protein LAP4; structura 99.6 2.5E-14 8.5E-19 81.2 11.4 80 30-109 5-91 (97)
24 2awx_A Synapse associated prot 99.6 3.2E-14 1.1E-18 82.0 11.5 72 38-109 14-91 (105)
25 2r4h_A Membrane-associated gua 99.6 3.7E-14 1.3E-18 82.7 11.9 81 28-109 26-107 (112)
26 3l4f_D SH3 and multiple ankyri 99.6 2.4E-14 8.1E-19 85.8 11.1 82 28-109 29-122 (132)
27 2opg_A Multiple PDZ domain pro 99.6 4.2E-14 1.5E-18 80.4 11.6 80 30-109 6-88 (98)
28 2jik_A Synaptojanin-2 binding 99.6 4.4E-14 1.5E-18 80.8 11.7 81 28-109 9-95 (101)
29 2fe5_A Presynaptic protein SAP 99.6 5.4E-14 1.8E-18 79.4 11.8 80 29-109 6-91 (94)
30 1vb7_A PDZ and LIM domain 2; P 99.6 3.9E-15 1.3E-19 84.3 7.0 81 29-109 7-87 (94)
31 1d5g_A Human phosphatase HPTP1 99.6 8.8E-14 3E-18 78.8 12.6 73 37-109 15-91 (96)
32 2iwo_A Multiple PDZ domain pro 99.6 8.3E-15 2.8E-19 86.5 8.6 82 28-109 26-111 (120)
33 3nfk_A Tyrosine-protein phosph 99.6 1.7E-14 5.7E-19 83.4 9.6 82 28-109 19-106 (107)
34 1x5q_A LAP4 protein; PDZ domai 99.6 6.7E-14 2.3E-18 81.2 12.2 82 28-109 15-103 (110)
35 1wi2_A Riken cDNA 2700099C19; 99.6 3.3E-14 1.1E-18 81.8 10.8 81 28-109 17-97 (104)
36 1ueq_A Membrane associated gua 99.6 8.7E-14 3E-18 82.3 12.7 82 28-109 19-104 (123)
37 1uep_A Membrane associated gua 99.6 1E-14 3.5E-19 83.8 8.5 74 36-109 18-94 (103)
38 2he4_A Na(+)/H(+) exchange reg 99.6 4.4E-14 1.5E-18 79.2 10.9 80 28-109 6-85 (90)
39 2i1n_A Discs, large homolog 3; 99.6 4.7E-14 1.6E-18 80.8 11.2 79 30-109 8-92 (102)
40 3ngh_A PDZ domain-containing p 99.6 4.6E-14 1.6E-18 81.4 11.1 81 28-109 3-83 (106)
41 1m5z_A GRIP, AMPA receptor int 99.6 9.8E-14 3.3E-18 77.9 12.2 79 30-109 10-89 (91)
42 1uhp_A Hypothetical protein KI 99.6 7.4E-14 2.5E-18 80.7 11.8 82 28-109 8-99 (107)
43 2vwr_A Ligand of NUMB protein 99.6 7E-14 2.4E-18 79.1 11.4 71 38-109 16-87 (95)
44 3axa_A Afadin, nectin-3, prote 99.6 4.8E-14 1.6E-18 81.4 10.9 82 28-109 11-96 (106)
45 2jil_A GRIP1 protein, glutamat 99.6 3.4E-14 1.1E-18 80.7 10.1 80 30-109 5-90 (97)
46 2v90_A PDZ domain-containing p 99.6 7.1E-14 2.4E-18 79.3 11.4 81 28-109 5-87 (96)
47 2dkr_A LIN-7 homolog B; LIN-7B 99.6 4.7E-14 1.6E-18 79.5 10.4 81 28-109 7-88 (93)
48 1n7t_A 99-MER peptide of densi 99.6 2.4E-14 8.2E-19 82.2 9.3 81 28-109 11-99 (103)
49 1q3o_A Shank1; PDZ, GKAP, pept 99.6 9.8E-14 3.3E-18 80.4 11.8 82 28-109 9-102 (109)
50 1wha_A KIAA0147 protein, scrib 99.6 4.4E-14 1.5E-18 81.4 10.2 82 28-109 7-96 (105)
51 2byg_A Channel associated prot 99.6 9.3E-14 3.2E-18 81.6 11.4 81 28-109 26-112 (117)
52 2ehr_A INAD-like protein; PDZ 99.6 5.7E-14 2E-18 82.4 10.5 82 28-109 17-108 (117)
53 1g9o_A NHE-RF; PDZ domain, com 99.6 2.2E-13 7.4E-18 76.5 12.4 78 28-107 5-82 (91)
54 2edp_A Fragment, shroom family 99.6 7.4E-15 2.5E-19 84.1 6.4 81 28-109 11-92 (100)
55 2h2b_A Tight junction protein 99.6 1.5E-13 5.1E-18 79.3 11.8 80 29-109 10-95 (107)
56 2iwq_A Multiple PDZ domain pro 99.6 6.7E-14 2.3E-18 82.9 10.5 98 12-109 10-117 (123)
57 2eno_A Synaptojanin-2-binding 99.6 1.2E-13 4E-18 81.4 11.5 81 28-109 19-105 (120)
58 1ujd_A KIAA0559 protein; PDZ d 99.6 5.7E-14 2E-18 82.5 10.0 72 38-109 30-107 (117)
59 2ejy_A 55 kDa erythrocyte memb 99.6 6.8E-14 2.3E-18 79.7 10.0 82 26-109 12-94 (97)
60 3o46_A Maguk P55 subfamily mem 99.6 1.8E-13 6.3E-18 77.1 11.4 80 28-109 6-86 (93)
61 3qe1_A Sorting nexin-27, G pro 99.6 2E-13 6.7E-18 78.8 11.7 81 28-109 8-100 (107)
62 2eeh_A PDZ domain-containing p 99.5 8.2E-14 2.8E-18 79.6 9.9 81 28-109 12-92 (100)
63 2vsp_A PDZ domain-containing p 99.5 5.1E-14 1.8E-18 79.1 8.9 80 28-109 5-84 (91)
64 3i4w_A Disks large homolog 4; 99.5 1.5E-13 5.3E-18 78.8 11.0 80 28-109 13-93 (104)
65 2djt_A Unnamed protein product 99.5 5.5E-14 1.9E-18 80.8 9.0 79 31-109 14-96 (104)
66 1kwa_A Hcask/LIN-2 protein; PD 99.5 1.6E-13 5.5E-18 76.8 10.7 80 28-109 3-83 (88)
67 2gzv_A PRKCA-binding protein; 99.5 2.2E-13 7.5E-18 79.7 11.6 82 28-109 26-108 (114)
68 2f5y_A Regulator of G-protein 99.5 2E-13 6.8E-18 76.7 11.0 77 28-109 5-81 (91)
69 1i16_A Interleukin 16, LCF; cy 99.5 6.6E-14 2.3E-18 83.6 9.4 73 37-109 39-116 (130)
70 1uew_A Membrane associated gua 99.5 1.7E-13 5.9E-18 80.0 10.9 82 28-109 12-101 (114)
71 2cs5_A Tyrosine-protein phosph 99.5 2E-14 7E-19 84.5 7.0 82 28-109 17-104 (119)
72 1um1_A KIAA1849 protein, RSGI 99.5 2.2E-13 7.5E-18 79.0 11.2 80 30-109 10-94 (110)
73 3cbz_A Dishevelled-2; PDZ doma 99.5 3.4E-14 1.2E-18 82.4 7.7 80 30-109 7-94 (108)
74 1v62_A KIAA1719 protein; struc 99.5 1.5E-13 5E-18 80.8 10.5 82 28-109 17-100 (117)
75 1uf1_A KIAA1526 protein; PDZ d 99.5 2.8E-13 9.7E-18 80.6 11.8 93 16-109 10-102 (128)
76 1v5l_A PDZ and LIM domain 3; a 99.5 6.2E-15 2.1E-19 84.8 4.2 80 30-109 7-86 (103)
77 2jre_A C60-1 PDZ domain peptid 99.5 1.8E-13 6.2E-18 79.1 10.4 82 28-109 12-102 (108)
78 2iwn_A Multiple PDZ domain pro 99.5 4.1E-13 1.4E-17 76.0 11.6 81 29-109 5-91 (97)
79 2daz_A INAD-like protein; PDZ 99.5 1.9E-13 6.6E-18 80.9 10.5 79 31-109 28-109 (124)
80 3k1r_A Harmonin; protein-prote 99.5 1.2E-13 4.2E-18 87.4 10.0 81 28-109 86-166 (192)
81 1uju_A Scribble; PDZ domain, c 99.5 3E-14 1E-18 82.9 6.6 82 28-109 11-102 (111)
82 2db5_A INAD-like protein; PDZ 99.5 9.1E-14 3.1E-18 82.7 8.8 82 28-109 27-113 (128)
83 2kpk_A Membrane-associated gua 99.5 9.9E-14 3.4E-18 82.8 8.8 82 28-109 18-103 (129)
84 1ufx_A KIAA1526 protein; PDZ d 99.5 1.8E-13 6.2E-18 78.7 9.3 80 29-109 9-95 (103)
85 2qkv_A Inactivation-NO-after-p 99.5 5E-13 1.7E-17 75.8 11.0 76 31-109 13-89 (96)
86 1x5n_A Harmonin; PDZ domain, u 99.5 2.3E-13 7.9E-18 79.4 9.8 81 28-109 17-97 (114)
87 2d92_A INAD-like protein; PDZ 99.5 2.1E-13 7.3E-18 78.9 9.5 81 28-109 17-103 (108)
88 2o2t_A Multiple PDZ domain pro 99.5 1.1E-13 3.6E-18 81.2 8.1 82 28-109 22-108 (117)
89 1wf8_A Neurabin-I; PDZ domain, 99.5 2.8E-13 9.6E-18 78.2 9.8 81 29-109 10-98 (107)
90 3egg_C Spinophilin; PP1, serin 99.5 3E-13 1E-17 84.2 10.4 82 28-109 80-169 (170)
91 2csj_A TJP2 protein; PDZ domai 99.5 2.2E-13 7.4E-18 79.9 9.3 79 30-109 18-102 (117)
92 2kv8_A RGS12, regulator of G-p 99.5 1.2E-13 4.2E-18 76.3 7.8 68 38-109 13-80 (83)
93 2d90_A PDZ domain containing p 99.5 2.8E-13 9.5E-18 77.6 9.5 80 28-109 8-87 (102)
94 2fcf_A Multiple PDZ domain pro 99.5 6.4E-13 2.2E-17 76.1 11.0 80 30-109 8-97 (103)
95 2qt5_A Glutamate receptor-inte 99.5 1E-12 3.5E-17 83.4 12.9 82 28-109 9-91 (200)
96 2koj_A Partitioning defective 99.5 6.5E-13 2.2E-17 77.1 11.0 82 28-109 11-99 (111)
97 3sfj_A TAX1-binding protein 3; 99.5 5.1E-13 1.8E-17 76.7 10.3 72 38-109 19-103 (104)
98 1wi4_A Synip, syntaxin binding 99.5 5E-13 1.7E-17 77.6 10.1 76 34-109 21-103 (109)
99 1q7x_A PDZ2B domain of PTP-BAS 99.5 2.5E-13 8.5E-18 78.6 8.8 73 37-109 19-100 (108)
100 3r68_A Na(+)/H(+) exchange reg 99.5 2.7E-13 9.1E-18 76.6 8.7 79 28-108 7-85 (95)
101 2kom_A Partitioning defective 99.5 1.2E-12 4.1E-17 77.3 11.8 82 28-109 30-118 (121)
102 1va8_A Maguk P55 subfamily mem 99.5 1E-12 3.5E-17 76.6 11.3 79 28-109 27-106 (113)
103 1wfv_A Membrane associated gua 99.5 2.6E-14 8.7E-19 82.0 4.3 73 37-109 21-94 (103)
104 2dls_A PDZ-rhogef, RHO guanine 99.5 1.6E-12 5.6E-17 73.3 11.7 76 28-109 10-85 (93)
105 3gsl_A Disks large homolog 4; 99.5 9.6E-13 3.3E-17 82.8 11.9 81 28-109 7-93 (196)
106 1wfg_A Regulating synaptic mem 99.5 6.7E-13 2.3E-17 79.4 10.5 73 37-109 47-125 (131)
107 1x6d_A Interleukin-16; PDZ dom 99.5 3.7E-13 1.3E-17 79.1 9.2 82 28-109 17-101 (119)
108 2edz_A PDZ domain-containing p 99.5 5.9E-13 2E-17 77.7 10.0 79 30-109 17-95 (114)
109 2g5m_B Neurabin-2; spinophilin 99.5 2.4E-13 8.3E-18 79.2 8.3 81 29-109 5-93 (113)
110 2la8_A Inactivation-NO-after-p 99.5 2.7E-13 9.3E-18 78.4 8.4 77 30-109 4-83 (106)
111 2jxo_A Ezrin-radixin-moesin-bi 99.5 5.5E-13 1.9E-17 75.8 9.5 73 36-109 18-91 (98)
112 1z87_A Alpha-1-syntrophin; pro 99.5 8.4E-14 2.9E-18 91.9 6.8 82 28-109 79-161 (263)
113 1tp5_A Presynaptic density pro 99.5 6.6E-13 2.2E-17 78.0 9.9 80 28-109 16-96 (119)
114 3khf_A Microtubule-associated 99.5 3.5E-13 1.2E-17 76.8 8.4 74 36-109 11-91 (99)
115 2dm8_A INAD-like protein; PDZ 99.5 3.3E-13 1.1E-17 78.9 8.5 73 37-109 27-101 (116)
116 2dmz_A INAD-like protein; PDZ 99.5 5.2E-13 1.8E-17 79.5 9.5 82 28-109 15-104 (129)
117 1wg6_A Hypothetical protein (r 99.5 1.3E-13 4.6E-18 82.0 6.9 82 28-109 25-120 (127)
118 2yt7_A Amyloid beta A4 precurs 99.5 1.9E-12 6.4E-17 74.1 11.4 82 28-109 11-97 (101)
119 3kzd_A TIAM-1, T-lymphoma inva 99.5 1.6E-12 5.6E-17 73.5 10.8 79 28-108 8-89 (94)
120 2vsv_A Rhophilin-2; scaffold p 99.5 1.5E-12 5E-17 75.6 10.9 77 28-109 25-102 (109)
121 1nf3_C PAR-6B; semi-CRIB motif 99.5 3.7E-13 1.2E-17 80.2 8.4 82 28-109 31-123 (128)
122 1y7n_A Amyloid beta A4 precurs 99.5 2.3E-12 7.7E-17 72.4 11.0 73 30-109 15-88 (90)
123 3bpu_A Membrane-associated gua 99.5 2.2E-12 7.5E-17 71.9 10.9 77 30-109 5-84 (88)
124 2eei_A PDZ domain-containing p 99.5 3.7E-13 1.3E-17 77.5 7.9 80 28-109 10-89 (106)
125 1v6b_A Harmonin isoform A1; st 99.5 5.6E-13 1.9E-17 78.4 8.8 74 36-109 26-105 (118)
126 3gge_A PDZ domain-containing p 99.5 4.7E-12 1.6E-16 71.5 12.0 78 28-108 7-87 (95)
127 1v5q_A GRIP1 homolog, glutamat 99.5 1.7E-12 5.9E-17 76.6 10.6 82 28-109 15-105 (122)
128 3tsv_A Tight junction protein 99.5 2E-12 6.7E-17 76.7 10.8 73 35-109 36-110 (124)
129 2dlu_A INAD-like protein; PDZ 99.4 1.2E-12 4E-17 76.0 9.6 79 28-109 17-96 (111)
130 1uez_A KIAA1526 protein; PDZ d 99.4 4.3E-13 1.5E-17 76.7 7.4 80 29-109 11-91 (101)
131 3e17_A Tight junction protein 99.4 2.9E-12 1E-16 71.6 10.4 65 38-108 13-78 (88)
132 1whd_A RGS3, regulator of G-pr 99.4 4.7E-13 1.6E-17 76.5 7.0 78 28-109 15-93 (100)
133 2z17_A Pleckstrin homology SEC 99.4 1.3E-12 4.4E-17 75.1 8.8 79 29-107 18-103 (104)
134 2e7k_A Maguk P55 subfamily mem 99.4 6.9E-13 2.3E-17 74.6 7.4 76 30-109 10-86 (91)
135 2lob_A Golgi-associated PDZ an 99.1 1.2E-14 4.1E-19 84.9 0.0 81 28-108 29-110 (112)
136 2vz5_A TAX1-binding protein 3; 99.4 3E-12 1E-16 77.3 10.1 72 38-109 38-122 (139)
137 1um7_A Synapse-associated prot 99.4 1.2E-12 4E-17 76.1 7.9 80 28-109 17-97 (113)
138 1qau_A Neuronal nitric oxide s 99.4 5.4E-12 1.8E-16 73.3 10.6 79 30-109 5-85 (112)
139 1uit_A Human discs large 5 pro 99.4 6.1E-12 2.1E-16 73.6 10.6 78 29-109 22-99 (117)
140 2qbw_A PDZ-fibronectin fusion 99.4 3.4E-12 1.2E-16 80.6 10.0 71 38-109 2-80 (195)
141 3r0h_A INAD, inactivation-NO-a 99.4 8.2E-12 2.8E-16 79.4 11.0 79 30-109 22-106 (206)
142 2edv_A FERM and PDZ domain-con 99.4 1.2E-12 4.1E-17 74.3 5.9 67 38-109 21-87 (96)
143 2eaq_A LIM domain only protein 99.4 9.5E-12 3.3E-16 69.5 9.5 69 38-109 17-87 (90)
144 3cyy_A Tight junction protein 99.4 2.3E-11 7.8E-16 68.1 10.6 66 38-109 15-81 (92)
145 1wif_A RSGI RUH-020, riken cDN 99.4 4.5E-12 1.5E-16 75.3 7.9 79 28-109 27-109 (126)
146 3soe_A Membrane-associated gua 99.4 2.3E-11 8E-16 70.9 10.7 75 30-109 14-91 (113)
147 2kjd_A Sodium/hydrogen exchang 99.3 1.8E-11 6.2E-16 72.6 10.2 80 28-109 11-91 (128)
148 2d8i_A T-cell lymphoma invasio 99.3 3.7E-12 1.3E-16 74.5 6.9 80 28-109 17-99 (114)
149 1ujv_A Membrane associated gua 99.3 3.6E-11 1.2E-15 68.1 10.4 75 30-109 12-89 (96)
150 2rcz_A Tight junction protein 99.3 4.2E-11 1.4E-15 65.4 10.2 66 38-109 13-79 (81)
151 3gsl_A Disks large homolog 4; 99.3 9.6E-11 3.3E-15 73.6 13.2 72 38-109 111-188 (196)
152 1p1d_A PDZ45, glutamate recept 99.3 2.4E-11 8.1E-16 76.9 10.4 80 30-109 10-96 (196)
153 2yuy_A RHO GTPase activating p 99.3 2.2E-12 7.5E-17 76.6 4.3 57 53-109 62-118 (126)
154 3r0h_A INAD, inactivation-NO-a 99.3 1.2E-10 4.2E-15 73.9 12.4 78 29-109 114-194 (206)
155 1b8q_A Protein (neuronal nitri 99.3 1.5E-11 5.1E-16 73.0 7.6 81 28-109 10-92 (127)
156 3qik_A Phosphatidylinositol 3, 99.3 8.7E-11 3E-15 67.0 10.1 69 37-108 27-98 (101)
157 1w9e_A Syntenin 1; cell adhesi 99.3 1.4E-10 4.9E-15 71.6 11.8 79 28-109 6-85 (166)
158 2l97_A HTRA, putative serine p 99.3 2.1E-11 7.1E-16 73.1 7.5 96 11-109 2-113 (134)
159 3tsz_A Tight junction protein 99.3 7E-11 2.4E-15 82.0 10.9 72 36-109 17-90 (391)
160 3shw_A Tight junction protein 99.3 6.1E-11 2.1E-15 83.8 10.5 74 34-109 7-82 (468)
161 2xkx_A Disks large homolog 4; 99.2 8.2E-11 2.8E-15 87.0 11.1 72 38-109 70-147 (721)
162 1vae_A Rhophilin 2, rhophilin, 99.2 2E-11 6.9E-16 71.0 6.1 70 36-109 24-94 (111)
163 2qt5_A Glutamate receptor-inte 99.2 2E-10 6.9E-15 72.7 10.6 82 28-109 106-193 (200)
164 2krg_A Na(+)/H(+) exchange reg 99.2 2.8E-11 9.7E-16 77.9 6.5 83 24-108 7-90 (216)
165 2yub_A LIMK-2, LIM domain kina 99.2 1.3E-10 4.3E-15 68.3 7.6 72 38-109 27-103 (118)
166 1p1d_A PDZ45, glutamate recept 99.2 1.7E-10 5.9E-15 72.9 8.1 73 37-109 118-193 (196)
167 1wh1_A KIAA1095 protein; PDZ d 99.1 5.9E-10 2E-14 65.8 8.6 70 38-109 32-105 (124)
168 3id1_A Regulator of sigma E pr 99.0 1.2E-09 4E-14 61.7 7.1 54 54-109 4-59 (95)
169 2xkx_A Disks large homolog 4; 99.0 3.8E-09 1.3E-13 78.1 11.2 71 38-109 318-389 (721)
170 3suz_A Amyloid beta A4 precurs 99.0 4.2E-10 1.4E-14 78.0 5.7 82 28-109 206-292 (388)
171 3rle_A Golgi reassembly-stacki 99.0 1.1E-09 3.9E-14 69.9 6.7 59 51-109 15-74 (209)
172 3i18_A LMO2051 protein; alpha- 99.0 1.9E-09 6.6E-14 61.3 6.7 55 52-109 7-63 (100)
173 2i6v_A General secretion pathw 98.9 1.1E-09 3.7E-14 60.9 4.4 55 53-109 20-76 (87)
174 2kl1_A YLBL protein; structure 98.9 2.3E-09 7.7E-14 60.4 4.7 55 52-109 5-61 (94)
175 2kjp_A Uncharacterized protein 98.9 6.2E-10 2.1E-14 62.5 2.1 54 53-109 2-57 (91)
176 2zpm_A Regulator of sigma E pr 98.9 3.3E-09 1.1E-13 59.1 5.0 55 53-109 5-60 (91)
177 2pzd_A Serine protease HTRA2; 98.9 9.9E-09 3.4E-13 59.4 7.1 55 52-109 35-89 (113)
178 2i4s_A General secretion pathw 98.9 9E-09 3.1E-13 59.0 6.6 56 54-109 39-94 (105)
179 4a8c_A Periplasmic PH-dependen 98.8 6.6E-09 2.2E-13 73.0 6.8 58 52-109 263-320 (436)
180 1y8t_A Hypothetical protein RV 98.8 2.4E-08 8.2E-13 67.5 9.1 69 38-109 229-299 (324)
181 1fc6_A Photosystem II D1 prote 98.8 4.2E-08 1.4E-12 67.9 10.2 72 38-109 85-157 (388)
182 1w9e_A Syntenin 1; cell adhesi 98.8 2.1E-07 7.1E-12 57.3 11.7 73 28-107 90-162 (166)
183 4a8c_A Periplasmic PH-dependen 98.8 6.3E-08 2.2E-12 68.0 10.2 56 52-109 363-418 (436)
184 2p3w_A Probable serine proteas 98.8 2.1E-08 7.1E-13 58.0 6.4 55 52-109 35-89 (112)
185 1te0_A Protease DEGS; two doma 98.8 4E-08 1.4E-12 66.3 8.6 56 52-109 244-301 (318)
186 2hga_A Conserved protein MTH13 98.7 5E-08 1.7E-12 57.7 7.1 54 52-109 25-80 (125)
187 3k50_A Putative S41 protease; 98.7 3.3E-08 1.1E-12 68.8 6.9 69 38-109 74-144 (403)
188 3stj_A Protease DEGQ; serine p 98.7 2.3E-08 7.8E-13 68.3 5.9 56 52-109 263-320 (345)
189 4fgm_A Aminopeptidase N family 98.6 9.1E-08 3.1E-12 69.6 7.7 66 38-109 485-552 (597)
190 3pv2_A DEGQ; trypsin fold, PDZ 98.6 6.7E-08 2.3E-12 68.1 6.6 56 52-109 282-339 (451)
191 3pv2_A DEGQ; trypsin fold, PDZ 98.6 9.5E-08 3.2E-12 67.4 6.5 55 53-109 387-441 (451)
192 3rle_A Golgi reassembly-stacki 98.6 9.1E-08 3.1E-12 61.1 5.8 69 38-109 95-168 (209)
193 3suz_A Amyloid beta A4 precurs 98.6 6E-09 2E-13 72.2 0.1 63 38-107 308-370 (388)
194 3qo6_A Protease DO-like 1, chl 98.6 8.4E-08 2.9E-12 65.5 5.6 56 52-109 251-319 (348)
195 1lcy_A HTRA2 serine protease; 98.5 3.3E-07 1.1E-11 62.0 7.5 55 52-109 256-310 (325)
196 1ky9_A Protease DO, DEGP, HTRA 98.3 2.6E-07 8.9E-12 65.1 2.4 56 52-109 286-343 (448)
197 3num_A Serine protease HTRA1; 98.2 2.1E-07 7.3E-12 63.1 0.0 55 52-109 254-308 (332)
198 1k32_A Tricorn protease; prote 98.0 2.4E-05 8.1E-10 59.6 8.5 66 38-109 737-813 (1045)
199 1ky9_A Protease DO, DEGP, HTRA 97.9 1.4E-06 4.7E-11 61.5 0.0 56 52-109 383-438 (448)
200 4fln_A Protease DO-like 2, chl 97.9 3.4E-05 1.2E-09 55.6 6.8 57 52-109 277-343 (539)
201 4fln_A Protease DO-like 2, chl 97.9 0.00019 6.6E-09 51.7 10.5 102 4-107 324-469 (539)
202 3dor_A Protein CT_858, CPAF; m 57.6 26 0.0009 25.7 5.6 30 53-86 97-126 (583)
203 2j3t_D Trafficking protein par 24.3 60 0.002 20.7 2.6 22 66-87 53-74 (219)
No 1
>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere, structural protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 1wjl_A
Probab=99.71 E-value=2.7e-16 Score=87.41 Aligned_cols=81 Identities=38% Similarity=0.669 Sum_probs=69.7
Q ss_pred EEEEEecCCCCccEEEecccCCCCCeEEEEECCCChhhhCCCCCCCEEEEECCEeCCCCCHHHHHHHHhCCCCeEEEEEE
Q psy5188 29 ELKLKKLECEAWGFRLTGGRDFGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQIL 108 (109)
Q Consensus 29 ~~~~~~~~~~~~G~~~~~~~~~~~~~~V~~v~~~~~a~~~Gl~~gD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~ 108 (109)
++++.+.+..+|||++.++.+...++.|..|.+++||+++||++||.|++|||.++.++++.+....++..+..+.+++.
T Consensus 2 ~~~v~l~~~~~~G~~l~gg~~~~~~v~V~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~ 81 (85)
T 1rgw_A 2 AYSVTLTGPGPWGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTMTHLEAQNKIKSASYNLSLTLQ 81 (85)
T ss_dssp EEEEEECCSSCCCEEECCCGGGTSCCBEEEECTTSHHHHSSCCCCSBEEEETTEECTTCCHHHHHHHHTTCSSCEEEEEE
T ss_pred cEEEEEeCCCccCEEEEeccCCCCCeEEEEECCCCHHHHcCCCCCCEEEEECCEECCCcCHHHHHHHHHcCCCeEEEEEE
Confidence 35666667789999999887666678999999999999999999999999999999999888877777777777888887
Q ss_pred C
Q psy5188 109 R 109 (109)
Q Consensus 109 r 109 (109)
|
T Consensus 82 R 82 (85)
T 1rgw_A 82 K 82 (85)
T ss_dssp S
T ss_pred e
Confidence 6
No 2
>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog, phosphorylation, signaling PR LIM domain, PDZ domain; 1.5A {Homo sapiens}
Probab=99.70 E-value=3.9e-16 Score=87.36 Aligned_cols=81 Identities=36% Similarity=0.690 Sum_probs=69.9
Q ss_pred EEEEEecCCCCccEEEecccCCCCCeEEEEECCCChhhhCCCCCCCEEEEECCEeCCCCCHHHHHHHHhCCCCeEEEEEE
Q psy5188 29 ELKLKKLECEAWGFRLTGGRDFGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQIL 108 (109)
Q Consensus 29 ~~~~~~~~~~~~G~~~~~~~~~~~~~~V~~v~~~~~a~~~Gl~~gD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~ 108 (109)
++++.+.+..+|||++.++.+...++.|..|.+++||+++||++||.|+++||.++.++++.+....++..+..+.+++.
T Consensus 4 ~~~v~l~~~~~~G~~l~~g~~~~~~~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~v~l~v~ 83 (88)
T 2uzc_A 4 NYSVSLVGPAPWGFRLQGGKDFNMPLTISSLKDGGKAAQANVRIGDVVLSIDGINAQGMTHLEAQNKIKGCTGSLNMTLQ 83 (88)
T ss_dssp EEEEEEESSSCCCEEEEEEGGGTEEEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSEEEEEEE
T ss_pred EEEEEEcCCCcccEEEECcCCCCCCeEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEE
Confidence 45666667789999999877665678999999999999999999999999999999999877777777766888999887
Q ss_pred C
Q psy5188 109 R 109 (109)
Q Consensus 109 r 109 (109)
|
T Consensus 84 R 84 (88)
T 2uzc_A 84 R 84 (88)
T ss_dssp C
T ss_pred e
Confidence 6
No 3
>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural genomics consortium, SGC; 1.11A {Homo sapiens}
Probab=99.70 E-value=2.7e-16 Score=88.24 Aligned_cols=82 Identities=39% Similarity=0.724 Sum_probs=70.6
Q ss_pred EEEEEEecCCCCccEEEecccCCCCCeEEEEECCCChhhhCCCCCCCEEEEECCEeCCCCCHHHHHHHHhCCCCeEEEEE
Q psy5188 28 EELKLKKLECEAWGFRLTGGRDFGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQI 107 (109)
Q Consensus 28 ~~~~~~~~~~~~~G~~~~~~~~~~~~~~V~~v~~~~~a~~~Gl~~gD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v 107 (109)
+++++.+.+..+|||++.++.+...++.|..+.+++||+++||++||.|++|||.++.++++.+....++..+..+.+++
T Consensus 3 ~~~~v~~~~~~~~G~~l~gg~~~~~~v~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~v~l~v 82 (89)
T 2q3g_A 3 DSFKVVLEGPAPWGFRLQGGKDFNVPLSISRLTPGGKAAQAGVAVGDWVLSIDGENAGSLTHIEAQNKIRACGERLSLGL 82 (89)
T ss_dssp EEEEEEEESSSCCCEEEEEEGGGTEEEEEEEECTTSHHHHTTCCTTCEEEEETTEEGGGCCHHHHHHHHHTCTTEEEEEE
T ss_pred cEEEEEEcCCCcccEEEECcCCCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCEEEEEE
Confidence 45667777778999999887765557899999999999999999999999999999998888887777777788888888
Q ss_pred EC
Q psy5188 108 LR 109 (109)
Q Consensus 108 ~r 109 (109)
.|
T Consensus 83 ~R 84 (89)
T 2q3g_A 83 SR 84 (89)
T ss_dssp EE
T ss_pred Ee
Confidence 65
No 4
>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics, structural genomics consort metal binding protein; 1.70A {Homo sapiens} PDB: 3pdv_A
Probab=99.69 E-value=7.7e-16 Score=85.99 Aligned_cols=81 Identities=42% Similarity=0.696 Sum_probs=70.3
Q ss_pred EEEEEecCCCCccEEEecccCCCCCeEEEEECCCChhhhCCCCCCCEEEEECCEeCCCCCHHHHHHHHhCCCCeEEEEEE
Q psy5188 29 ELKLKKLECEAWGFRLTGGRDFGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQIL 108 (109)
Q Consensus 29 ~~~~~~~~~~~~G~~~~~~~~~~~~~~V~~v~~~~~a~~~Gl~~gD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~ 108 (109)
++++.+.+..+|||++.++.+...++.|..|.+++||+++||++||.|+++||.++.++++.+....++.....+.+++.
T Consensus 3 ~~~v~~~~~~~lG~~l~~~~~~~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~ 82 (87)
T 2pa1_A 3 ALTVDVAGPAPWGFRITGGRDFHTPIMVTKVAERGKAKDADLRPGDIIVAINGESAEGMLHAEAQSKIRQSPSPLRLQLD 82 (87)
T ss_dssp EEEEEECSSSCCSEEEEEEGGGTEEEEEEEECSSSHHHHTTCCTTCEEEEETTEESTTCCHHHHHHHHHTCCSSEEEEEE
T ss_pred EEEEEECCCCccCEEEecccCCCCCEEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEE
Confidence 46777777799999999887655678999999999999999999999999999999988788888888776688888887
Q ss_pred C
Q psy5188 109 R 109 (109)
Q Consensus 109 r 109 (109)
|
T Consensus 83 R 83 (87)
T 2pa1_A 83 R 83 (87)
T ss_dssp E
T ss_pred e
Confidence 5
No 5
>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics, structural genomics consort unknown function; HET: PG4; 1.50A {Homo sapiens} PDB: 2v1w_A*
Probab=99.67 E-value=1.4e-15 Score=85.60 Aligned_cols=81 Identities=42% Similarity=0.693 Sum_probs=69.6
Q ss_pred EEEEEecCCCCccEEEecccCCCCCeEEEEECCCChhhhCCCCCCCEEEEECCEeCCCCCHHHHHHHHhCCCCeEEEEEE
Q psy5188 29 ELKLKKLECEAWGFRLTGGRDFGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQIL 108 (109)
Q Consensus 29 ~~~~~~~~~~~~G~~~~~~~~~~~~~~V~~v~~~~~a~~~Gl~~gD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~ 108 (109)
.+++.+.+..+|||++.++.+...++.|..|.+++||+++||++||.|+++||.++.++.+.+....++..+..+.+++.
T Consensus 4 ~~~v~~~~~~~~G~~l~~~~~~~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v~ 83 (91)
T 2pkt_A 4 TQQIDLQGPGPWGFRLVGGKDFEQPLAISRVTPGSKAALANLCIGDVITAIDGENTSNMTHLEAQNRIKGCTDNLTLTVA 83 (91)
T ss_dssp EEEEEEESSSCCSEEEEEEGGGTEEEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHTCSSEEEEEEE
T ss_pred cEEEEECCCCCCCEEEEccCCCCCCeEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEE
Confidence 45666667789999998876655578999999999999999999999999999999999877777777778889999887
Q ss_pred C
Q psy5188 109 R 109 (109)
Q Consensus 109 r 109 (109)
|
T Consensus 84 R 84 (91)
T 2pkt_A 84 R 84 (91)
T ss_dssp E
T ss_pred E
Confidence 5
No 6
>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=8.9e-16 Score=86.96 Aligned_cols=80 Identities=44% Similarity=0.679 Sum_probs=69.2
Q ss_pred EEEEecCCCCccEEEecccCCCCCeEEEEECCCChhhhCCCCCCCEEEEECCEeCCCCCHHHHHHHHhCCCCeEEEEEEC
Q psy5188 30 LKLKKLECEAWGFRLTGGRDFGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQILR 109 (109)
Q Consensus 30 ~~~~~~~~~~~G~~~~~~~~~~~~~~V~~v~~~~~a~~~Gl~~gD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~r 109 (109)
+.+.+.+..+|||.+.++.+...++.|..|.+++||+++||++||+|++|||.++.++++.+....++..+..+.+++.|
T Consensus 10 ~~v~l~~~~~~G~~l~gg~~~~~~v~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~v~l~v~R 89 (94)
T 2eeg_A 10 HSVTLRGPSPWGFRLVGGRDFSAPLTISRVHAGSKAALAALCPGDLIQAINGESTELMTHLEAQNRIKGCHDHLTLSVSS 89 (94)
T ss_dssp EEEEECCSSCCSCCEECCTTTTSCCEECCCCSSSHHHHTTCCTTCEEEEETTEETTTCCHHHHHHHHHTCCSCEEEEEEC
T ss_pred EEEEEeCCCccCEEEECccCCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEe
Confidence 45555667899999998877666899999999999999999999999999999999988777777777777888898876
No 7
>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer, membrane protein-oxidoreductase CO; 1.90A {Mus musculus} SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A
Probab=99.66 E-value=1.8e-15 Score=84.99 Aligned_cols=82 Identities=26% Similarity=0.458 Sum_probs=70.3
Q ss_pred EEEEEEecCCCCccEEEecccCCCCCeEEEEECCCChhhhC-CCCCCCEEEEECCEeCCCCCHHHHHHHHhCCCCeEEEE
Q psy5188 28 EELKLKKLECEAWGFRLTGGRDFGTPLTVLRVTGTSVAEEG-GMEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQ 106 (109)
Q Consensus 28 ~~~~~~~~~~~~~G~~~~~~~~~~~~~~V~~v~~~~~a~~~-Gl~~gD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~ 106 (109)
.++.+.+....+|||++.++.+...++.|..+.+++||+++ ||++||.|++|||.++.++++.+....++..+..+.++
T Consensus 6 ~~v~l~k~~~~~lG~~i~~~~~~~~g~~V~~V~~~spA~~aggl~~GD~I~~ing~~v~~~~~~~~~~~~~~~~~~v~l~ 85 (90)
T 1qav_A 6 RRVTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLE 85 (90)
T ss_dssp EEEEEECCTTTCCCEEEEEEGGGTEEEEEEEECTTSHHHHTTCCCTTEEEEEETTEECTTCCHHHHHHHHHTCCSEEEEE
T ss_pred EEEEEEeCCCCCcCEEEEcccCCCCCEEEEEECCCCHHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEE
Confidence 45666665668999999887655557899999999999999 89999999999999999998888888888778888888
Q ss_pred EEC
Q psy5188 107 ILR 109 (109)
Q Consensus 107 v~r 109 (109)
+.|
T Consensus 86 v~r 88 (90)
T 1qav_A 86 VKY 88 (90)
T ss_dssp EEE
T ss_pred EEE
Confidence 865
No 8
>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; PDZ, E6 binding, tumor suppressor, peptide binding protein; 2.15A {Mus musculus}
Probab=99.63 E-value=9e-15 Score=81.24 Aligned_cols=73 Identities=29% Similarity=0.497 Sum_probs=63.5
Q ss_pred CCCccEEEecccCCCCCeEEEEECCCChhhhCC-CCCCCEEEEECCEeCCCCCHHHHHHHHhCC--CCeEEEEEEC
Q psy5188 37 CEAWGFRLTGGRDFGTPLTVLRVTGTSVAEEGG-MEVGDMIVSINGQCTQAMTHVEAQQHIIGS--GNTLTLQILR 109 (109)
Q Consensus 37 ~~~~G~~~~~~~~~~~~~~V~~v~~~~~a~~~G-l~~gD~I~~vng~~v~~~~~~~~~~~~~~~--~~~v~l~v~r 109 (109)
..++||++.++.+...++.|..+.+++||+++| |++||.|+++||.++.++++.+....++.. +..+.+++.|
T Consensus 10 ~~g~G~~i~~~~~~~~~~~V~~v~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R 85 (85)
T 2i04_A 10 SRGFGFTVVGGDEPDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKIFQSIPIGASVDLELCR 85 (85)
T ss_dssp TTBSSEEEEECCSTTBCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTSCTTCEEEEEEEC
T ss_pred CCCCCEEEEcccCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEEEEC
Confidence 378999998876655579999999999999999 999999999999999988888877777764 7889999876
No 9
>4e34_A Golgi-associated PDZ and coiled-coil motif-contai protein; PDZ-peptide complex, protein transport-inhibitor complex; 1.40A {Homo sapiens} PDB: 4e35_A
Probab=99.63 E-value=4.8e-15 Score=82.70 Aligned_cols=81 Identities=26% Similarity=0.515 Sum_probs=68.6
Q ss_pred EEEEEEecCCCCccEEEecccCCCCCeEEEEECCCChhhh-CCCCCCCEEEEECCEeCCCCCHHHHHHHHhCCCCeEEEE
Q psy5188 28 EELKLKKLECEAWGFRLTGGRDFGTPLTVLRVTGTSVAEE-GGMEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQ 106 (109)
Q Consensus 28 ~~~~~~~~~~~~~G~~~~~~~~~~~~~~V~~v~~~~~a~~-~Gl~~gD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~ 106 (109)
+.+.+.+....+|||++.++.+...+++|..+.+++||++ +||++||.|+++||.++.++++.+....++.++..+.++
T Consensus 4 ~~v~l~~~~~~~lG~~i~~~~~~~~~~~V~~V~~gspA~~~agl~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~ 83 (87)
T 4e34_A 4 RKVLLLKEDHEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQQRGEIEFE 83 (87)
T ss_dssp EEEEEECCTTBCCCEEEEEEGGGTEEEEEEEECTTSHHHHHSCCCTTEEEEEETTEECTTCCHHHHHHHHHHCCSEEEEE
T ss_pred EEEEEEECCCCcccEEEEccCCCCCCEEEEEECCCCHHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEE
Confidence 4456665555799999988765555789999999999999 699999999999999999999998888888777888888
Q ss_pred EE
Q psy5188 107 IL 108 (109)
Q Consensus 107 v~ 108 (109)
+.
T Consensus 84 v~ 85 (87)
T 4e34_A 84 VV 85 (87)
T ss_dssp EE
T ss_pred EE
Confidence 75
No 10
>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.63 E-value=1.1e-15 Score=87.90 Aligned_cols=81 Identities=35% Similarity=0.645 Sum_probs=68.6
Q ss_pred EEEEEecCCCCccEEEecccCCCCCeEEEEECCCChhhhCCCCCCCEEEEECCEeCCCCCHHHHHHHHhCCCCeEEEEEE
Q psy5188 29 ELKLKKLECEAWGFRLTGGRDFGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQIL 108 (109)
Q Consensus 29 ~~~~~~~~~~~~G~~~~~~~~~~~~~~V~~v~~~~~a~~~Gl~~gD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~ 108 (109)
.+++.+.+..+|||++.++.+...++.|..|.+++||+++||++||.|++|||.++.++++.+....++..+..+.+++.
T Consensus 6 ~~~v~l~~~~~~G~~l~gg~~~~~~v~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~v~l~v~ 85 (103)
T 1wf7_A 6 SGSVSLVGPAPWGFRLQGGKDFNMPLTISSLKDGGKASQAHVRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMTLQ 85 (103)
T ss_dssp CEEEEEESSSCCSCCEEEETTTTEEEEECCCCTTCHHHHTTCCTTCBEEEETTEECSSCCHHHHHHHHHHCSSEEEEEEC
T ss_pred EEEEEEeCCCccCEEEeccccCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEE
Confidence 34555556789999999887665568899999999999999999999999999999998878777777666788888886
Q ss_pred C
Q psy5188 109 R 109 (109)
Q Consensus 109 r 109 (109)
|
T Consensus 86 R 86 (103)
T 1wf7_A 86 R 86 (103)
T ss_dssp C
T ss_pred e
Confidence 5
No 11
>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP: b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A
Probab=99.63 E-value=7.7e-15 Score=81.21 Aligned_cols=74 Identities=22% Similarity=0.347 Sum_probs=64.7
Q ss_pred EEEEEEecCCCCccEEEecccCCCCCeEEEEECCCChhhhCCCCCCCEEEEECCEeCCCCCHHHHHHHHhCCCCeEEEEE
Q psy5188 28 EELKLKKLECEAWGFRLTGGRDFGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQI 107 (109)
Q Consensus 28 ~~~~~~~~~~~~~G~~~~~~~~~~~~~~V~~v~~~~~a~~~Gl~~gD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v 107 (109)
+.+++.+....++||++.++ .|..+.+++||+++||++||+|++|||.++.++++.++..+++.++..+++++
T Consensus 6 r~v~l~k~~~g~~Gf~i~~g-------~I~~v~~gspA~~aGl~~GD~Il~VNG~~v~~~~~~evv~llr~~g~~V~L~v 78 (82)
T 1r6j_A 6 RTITMHKDSTGHVGFIFKNG-------KITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITI 78 (82)
T ss_dssp EEEEEECCTTSCCCEEEETT-------EEEEECTTSHHHHHTCCSSEEEEEETTEECTTCCHHHHHHHHHHSCSEEEEEE
T ss_pred EEEEEEECCCCCeEEEEECC-------EEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCEEEEEE
Confidence 55666665557899999865 37899999999999999999999999999999999999999998889999987
Q ss_pred E
Q psy5188 108 L 108 (109)
Q Consensus 108 ~ 108 (109)
.
T Consensus 79 ~ 79 (82)
T 1r6j_A 79 M 79 (82)
T ss_dssp E
T ss_pred E
Confidence 4
No 12
>2ego_A General receptor for phosphoinositides 1- associated scaffold protein; PDZ domain, ligand-free, protein binding; 1.80A {Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A
Probab=99.63 E-value=1.2e-14 Score=82.59 Aligned_cols=82 Identities=32% Similarity=0.431 Sum_probs=66.2
Q ss_pred EEEEEEecCCCCccEEEec-------ccCCCCCeEEEEECCCChhhhCCCCCCCEEEEECCEeCCCCCHHHHHHHHhCCC
Q psy5188 28 EELKLKKLECEAWGFRLTG-------GRDFGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGSG 100 (109)
Q Consensus 28 ~~~~~~~~~~~~~G~~~~~-------~~~~~~~~~V~~v~~~~~a~~~Gl~~gD~I~~vng~~v~~~~~~~~~~~~~~~~ 100 (109)
+.+.+.+....+|||++.+ +.+...++.|..+.+++||+++||++||.|++|||.++.++++.+....++..+
T Consensus 6 r~v~l~k~~~~~~Gf~l~~~g~~~~~~~~~~~~~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~~~ 85 (96)
T 2ego_A 6 KVLTLEKGDNQTFGFEIQTYGLHHREEQRVEMVTFVARVHESSPAQLAGLTPGDTIASVNGLNVEGIRHREIVDIIKASG 85 (96)
T ss_dssp EEEEEECCTTCCCSEEEEEEEC-------CCEEEEEEEECTTCHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHHTT
T ss_pred EEEEEEeCCCCCccEEEEeccccccCCCCCCCCeEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence 4556666555799999986 333344688999999999999999999999999999999988888888787766
Q ss_pred CeEEEEEEC
Q psy5188 101 NTLTLQILR 109 (109)
Q Consensus 101 ~~v~l~v~r 109 (109)
..+.+++.|
T Consensus 86 ~~v~l~v~~ 94 (96)
T 2ego_A 86 NVLRLETLY 94 (96)
T ss_dssp TEEEEEEEC
T ss_pred CeEEEEEEE
Confidence 788888864
No 13
>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural genomics, structural genomics consortium, SGC, metal-binding; 1.75A {Homo sapiens}
Probab=99.62 E-value=1.2e-14 Score=85.68 Aligned_cols=82 Identities=21% Similarity=0.441 Sum_probs=70.1
Q ss_pred EEEEEEecCCCCccEEEecccC---CCCCeEEEEECCCChhhhCC-CCCCCEEEEECCEeCCCCCHHHHHHHHhCCCCeE
Q psy5188 28 EELKLKKLECEAWGFRLTGGRD---FGTPLTVLRVTGTSVAEEGG-MEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTL 103 (109)
Q Consensus 28 ~~~~~~~~~~~~~G~~~~~~~~---~~~~~~V~~v~~~~~a~~~G-l~~gD~I~~vng~~v~~~~~~~~~~~~~~~~~~v 103 (109)
+.+.+.+....+|||++.++.+ ...+++|..+.+++||+++| |++||+|++|||.++.++++.++...++..+..+
T Consensus 26 ~~v~l~k~~~~~lGf~i~gg~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~v 105 (118)
T 3b76_A 26 KVVNIQKDPGESLGMTVAGGASHREWDLPIYVISVEPGGVISRDGRIKTGDILLNVDGVELTEVSRSEAVALLKRTSSSI 105 (118)
T ss_dssp EEEEEECCTTCCCCEEEEECSCSTTCCCCEEEEEECTTSHHHHHCSSCTTCEEEEETTEEGGGSCHHHHHHHHHSCCSEE
T ss_pred EEEEEEeCCCCccCEEEecCCCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeE
Confidence 5556665445899999998753 23578999999999999999 9999999999999999999999999898888889
Q ss_pred EEEEEC
Q psy5188 104 TLQILR 109 (109)
Q Consensus 104 ~l~v~r 109 (109)
.+++.|
T Consensus 106 ~L~v~R 111 (118)
T 3b76_A 106 VLKALE 111 (118)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 998865
No 14
>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase, protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A
Probab=99.62 E-value=1.8e-14 Score=85.48 Aligned_cols=82 Identities=23% Similarity=0.363 Sum_probs=70.3
Q ss_pred EEEEEEecCCCCccEEEecccCCCCCeEEEEECCCChhhhCC-CCCCCEEEEECCEeCCCCCHHHHHHHHhCCCCeEEEE
Q psy5188 28 EELKLKKLECEAWGFRLTGGRDFGTPLTVLRVTGTSVAEEGG-MEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQ 106 (109)
Q Consensus 28 ~~~~~~~~~~~~~G~~~~~~~~~~~~~~V~~v~~~~~a~~~G-l~~gD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~ 106 (109)
+++.+.+....+|||++.++.+...++.|..+.+++||+++| |++||+|++|||.++.++++.+....++..+..+.++
T Consensus 21 ~~v~l~k~~~~~lG~~i~gg~~~~~~~~V~~v~~gspA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~~~v~l~ 100 (125)
T 3hpk_A 21 GKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 100 (125)
T ss_dssp EEEEEECCTTSCCCEEEEECSSCCSSEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHSCSEEEEE
T ss_pred eEEEEEeCCCCCcCEEEeccCCCCCCEEEEEeCCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEE
Confidence 455555555589999999887666678999999999999999 9999999999999999999998888888777778888
Q ss_pred EEC
Q psy5188 107 ILR 109 (109)
Q Consensus 107 v~r 109 (109)
+.|
T Consensus 101 v~r 103 (125)
T 3hpk_A 101 YNK 103 (125)
T ss_dssp EEE
T ss_pred EEE
Confidence 764
No 15
>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex, erbin., signaling protein; 1.25A {Homo sapiens} SCOP: b.36.1.1 PDB: 1mfl_A
Probab=99.62 E-value=1.8e-14 Score=81.55 Aligned_cols=80 Identities=26% Similarity=0.343 Sum_probs=67.2
Q ss_pred EEEEEecCCCCccEEEecccC--------CCCCeEEEEECCCChhhhCCCCCCCEEEEECCEeCCCCCHHHHHHHHhCCC
Q psy5188 29 ELKLKKLECEAWGFRLTGGRD--------FGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGSG 100 (109)
Q Consensus 29 ~~~~~~~~~~~~G~~~~~~~~--------~~~~~~V~~v~~~~~a~~~Gl~~gD~I~~vng~~v~~~~~~~~~~~~~~~~ 100 (109)
.+++.+....+|||++.++.+ ...++.|..|.+++||++ ||++||.|++|||.++.++.+.+....++..+
T Consensus 4 ~~~v~l~~~~~lG~~i~gg~~~~~~p~~~~~~gv~V~~V~~~spA~~-gL~~GD~I~~vng~~v~~~~~~~~~~~~~~~~ 82 (95)
T 1mfg_A 4 EIRVRVEKDPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK-LLQPGDKIIQANGYSFINIEHGQAVSLLKTFQ 82 (95)
T ss_dssp EEEEEEECSSSCSEEEEECBTSCCCSSSTTCCCEEEEEECTTSTTTT-TCCTTCEEEEETTEECTTCBHHHHHHHHHHCC
T ss_pred EEEEEECCCCCCCEEEeCCcCccCCccccCCCCEEEEEECCCCchhh-CCCCCCEEEEECCEEcCCCCHHHHHHHhhcCC
Confidence 455666666799999988653 234799999999999999 99999999999999999988888777777778
Q ss_pred CeEEEEEEC
Q psy5188 101 NTLTLQILR 109 (109)
Q Consensus 101 ~~v~l~v~r 109 (109)
..+.+++.|
T Consensus 83 ~~v~l~v~R 91 (95)
T 1mfg_A 83 NTVELIIVR 91 (95)
T ss_dssp SEEEEEEEE
T ss_pred CeEEEEEEe
Confidence 899998875
No 16
>4amh_A Disks large homolog 1; permutation, protein folding, structural protein; 2.30A {Homo sapiens}
Probab=99.62 E-value=1.2e-14 Score=84.08 Aligned_cols=74 Identities=20% Similarity=0.440 Sum_probs=65.5
Q ss_pred CCCCccEEEecccCCC-----CCeEEEEECCCChhhhCC-CCCCCEEEEECCEeCCCCCHHHHHHHHhCCCCeEEEEEEC
Q psy5188 36 ECEAWGFRLTGGRDFG-----TPLTVLRVTGTSVAEEGG-MEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQILR 109 (109)
Q Consensus 36 ~~~~~G~~~~~~~~~~-----~~~~V~~v~~~~~a~~~G-l~~gD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~r 109 (109)
...+|||++.+|.+.. .++.|..|.+++||+++| |++||+|++|||.++.++++.+....++..+..+.+++.|
T Consensus 11 ~~~~~Gf~i~gG~~~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~v~l~v~R 90 (106)
T 4amh_A 11 GSKGLGFSIAGGVGNQHWPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVALEEVTHEEAVTALKNTSDFVYLKVAK 90 (106)
T ss_dssp -CCCSCEEEEECTTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHSCCSEEEEEEEC
T ss_pred CCCccCEEEEeccCCccccCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeEEEEEEe
Confidence 4489999999887653 278999999999999999 9999999999999999998998888888888899998876
No 17
>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform B; GOPC PDZ domain, structural protein; NMR {Homo sapiens}
Probab=99.61 E-value=6.3e-15 Score=84.81 Aligned_cols=82 Identities=24% Similarity=0.467 Sum_probs=69.6
Q ss_pred EEEEEEecCCCCccEEEecccCCCCCeEEEEECCCChhhhC-CCCCCCEEEEECCEeCCCCCHHHHHHHHhCCCCeEEEE
Q psy5188 28 EELKLKKLECEAWGFRLTGGRDFGTPLTVLRVTGTSVAEEG-GMEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQ 106 (109)
Q Consensus 28 ~~~~~~~~~~~~~G~~~~~~~~~~~~~~V~~v~~~~~a~~~-Gl~~gD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~ 106 (109)
..+.+.+....+|||++.++.+...++.|..+.+++||+++ ||++||.|++|||.++.+.++.++...++..+..+.++
T Consensus 11 ~~v~l~~~~~~~lG~~l~~g~~~~~~~~V~~V~~~s~A~~a~gL~~GD~Il~Ing~~v~~~~~~~~~~~l~~~~~~v~l~ 90 (103)
T 2dc2_A 11 RKVLLLKEDHEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQQRGEIEFE 90 (103)
T ss_dssp EEEEEECCSSSCCCEEEEEEGGGTEEEEEEEECTTSHHHHHTCCCSSEEEEEETTEESTTSCHHHHHHHHHHCCSEEEEE
T ss_pred EEEEEEeCCCCccCEEEEeccCCCCCEEEEEECCCCHHHHhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCcEEEE
Confidence 44566555568999999987665557899999999999995 89999999999999999999999888888877888888
Q ss_pred EEC
Q psy5188 107 ILR 109 (109)
Q Consensus 107 v~r 109 (109)
+.|
T Consensus 91 v~~ 93 (103)
T 2dc2_A 91 VVY 93 (103)
T ss_dssp EEE
T ss_pred EEe
Confidence 753
No 18
>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein; 1.80A {Drosophila melanogaster} SCOP: b.36.1.1
Probab=99.61 E-value=9.3e-15 Score=83.19 Aligned_cols=82 Identities=22% Similarity=0.282 Sum_probs=68.5
Q ss_pred EEEEEEecCCCCccEEEecccCCCC------CeEEEEECCCChhhhCC-CCCCCEEEEECCEeCCCCCHHHHHHHHhCCC
Q psy5188 28 EELKLKKLECEAWGFRLTGGRDFGT------PLTVLRVTGTSVAEEGG-MEVGDMIVSINGQCTQAMTHVEAQQHIIGSG 100 (109)
Q Consensus 28 ~~~~~~~~~~~~~G~~~~~~~~~~~------~~~V~~v~~~~~a~~~G-l~~gD~I~~vng~~v~~~~~~~~~~~~~~~~ 100 (109)
..+++.+.+..+|||++.++.+... ++.|..+.+++||+.+| |++||.|++|||.++.++++.+....++..+
T Consensus 7 ~~v~l~k~~~~glG~~i~~~~~~~~~~~~~~g~~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~~g 86 (98)
T 1ihj_A 7 HMVTLDKTGKKSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKEAD 86 (98)
T ss_dssp EEEEEECTTSSSCCEEEEEEEECCSSSCCEEEEEEEEECTTSHHHHHCSCCTTCEEEEETTEECTTCCHHHHHHHHHHSC
T ss_pred EEEEEEeCCCCCcCEEEeccccCCccccCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHhcCC
Confidence 4456665556899999987764332 68899999999999999 9999999999999999988888777777778
Q ss_pred CeEEEEEEC
Q psy5188 101 NTLTLQILR 109 (109)
Q Consensus 101 ~~v~l~v~r 109 (109)
..+.+++.|
T Consensus 87 ~~v~l~v~R 95 (98)
T 1ihj_A 87 FKIELEIQT 95 (98)
T ss_dssp SEEEEEEEE
T ss_pred CeEEEEEEe
Confidence 899999876
No 19
>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics, structural genomics consortium, SGC, signaling protein; 1.40A {Homo sapiens}
Probab=99.61 E-value=2.5e-14 Score=80.55 Aligned_cols=79 Identities=25% Similarity=0.369 Sum_probs=65.6
Q ss_pred EEEEecCCCCccEEEecccCCCCCeEEEEECCCChhhhCC-CCCCCEEEEECCEeCCCCCHHHHHHHHhCCCCeEEEEEE
Q psy5188 30 LKLKKLECEAWGFRLTGGRDFGTPLTVLRVTGTSVAEEGG-MEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQIL 108 (109)
Q Consensus 30 ~~~~~~~~~~~G~~~~~~~~~~~~~~V~~v~~~~~a~~~G-l~~gD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~ 108 (109)
+++.+....++||++.++.+ ..++.|..+.+++||+++| |++||.|+++||.++.+..+.+....++..+..+.+++.
T Consensus 8 v~l~k~~~~~lG~~~~~~~~-~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~ 86 (92)
T 2qg1_A 8 IGLQKKPGKGLGLSIVGKRN-DTGVFVSDIVKGGIADADGRLMQGDQILMVNGEDVRNATQEAVAALLKCSLGTVTLEVG 86 (92)
T ss_dssp EEEECCTTSCCSEEEECCSS-SCSCEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCSEEEEEEE
T ss_pred EEEEeCCCCcccEEEEeccC-CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEE
Confidence 33443344899999987654 3478999999999999999 999999999999999988888777777777788999987
Q ss_pred C
Q psy5188 109 R 109 (109)
Q Consensus 109 r 109 (109)
|
T Consensus 87 R 87 (92)
T 2qg1_A 87 R 87 (92)
T ss_dssp C
T ss_pred c
Confidence 6
No 20
>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A
Probab=99.61 E-value=3.2e-14 Score=80.86 Aligned_cols=80 Identities=24% Similarity=0.374 Sum_probs=67.2
Q ss_pred EEEEecCC-CCccEEEecccCCCCCeEEEEECCCChhhhCC-CCCCCEEEEECCEeCCCCCHHHHHHHHhCCCCeEEEEE
Q psy5188 30 LKLKKLEC-EAWGFRLTGGRDFGTPLTVLRVTGTSVAEEGG-MEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQI 107 (109)
Q Consensus 30 ~~~~~~~~-~~~G~~~~~~~~~~~~~~V~~v~~~~~a~~~G-l~~gD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v 107 (109)
+++.+... .++||++.++.+...++.|..+.+++||+++| |++||+|++|||.++.++++.+....++..+..+.+++
T Consensus 7 ~~v~l~~~~~~lG~~i~~~~~~~~~~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~g~~v~l~v 86 (97)
T 1n7e_A 7 YTVELKRYGGPLGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKI 86 (97)
T ss_dssp EEEEEECTTSCCCEEEECCSSTTSCCEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSEEEEEE
T ss_pred EEEEEEeCCCCcCEEEEcccCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEE
Confidence 44444444 66999998876554689999999999999999 99999999999999998888888777777788899988
Q ss_pred EC
Q psy5188 108 LR 109 (109)
Q Consensus 108 ~r 109 (109)
.|
T Consensus 87 ~R 88 (97)
T 1n7e_A 87 KK 88 (97)
T ss_dssp EC
T ss_pred Ee
Confidence 76
No 21
>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; Cys Ser mutant, S genomics consortium, SGC, transferase; 2.00A {Homo sapiens}
Probab=99.61 E-value=7.3e-15 Score=82.43 Aligned_cols=72 Identities=22% Similarity=0.462 Sum_probs=62.1
Q ss_pred CCccEEEecccCCCCCeEEEEECCCChhhhCC-CCCCCEEEEECCEeCCCCCHHHHHHHHhCC--CCeEEEEEEC
Q psy5188 38 EAWGFRLTGGRDFGTPLTVLRVTGTSVAEEGG-MEVGDMIVSINGQCTQAMTHVEAQQHIIGS--GNTLTLQILR 109 (109)
Q Consensus 38 ~~~G~~~~~~~~~~~~~~V~~v~~~~~a~~~G-l~~gD~I~~vng~~v~~~~~~~~~~~~~~~--~~~v~l~v~r 109 (109)
.+|||++.++.+...++.|..|.+++||+++| |++||.|++|||.++.+.++.+....++.. +..+.+++.|
T Consensus 13 ~g~G~~~~~g~~~~~~~~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~~~v~l~v~R 87 (90)
T 2q9v_A 13 TGFGFRILGGNEPGEPIYIGHIVPLGAADTDGRLRSGDELISVDGTPVIGKSHQLVVQLMQQAAKQGHVNLTVRQ 87 (90)
T ss_dssp TBCCEEEEECSSTTSCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTSCHHHHHHHHHHHHHHTEEEEEEEE
T ss_pred CccCEEEEccccCCCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEEEEe
Confidence 78999999876655579999999999999999 999999999999999988888877777654 3488888865
No 22
>2fne_A Multiple PDZ domain protein; structural protein, structural genomics, SGC, structural genomics consortium, unknown function; 1.83A {Homo sapiens} SCOP: b.36.1.1
Probab=99.61 E-value=4.3e-15 Score=87.39 Aligned_cols=82 Identities=29% Similarity=0.445 Sum_probs=66.7
Q ss_pred EEEEEEecCC-CCccEEEecccCC---CCCeEEEEECCCChhhhCC-CCCCCEEEEECCEeCCCCCHHHHHHHHhCCCCe
Q psy5188 28 EELKLKKLEC-EAWGFRLTGGRDF---GTPLTVLRVTGTSVAEEGG-MEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNT 102 (109)
Q Consensus 28 ~~~~~~~~~~-~~~G~~~~~~~~~---~~~~~V~~v~~~~~a~~~G-l~~gD~I~~vng~~v~~~~~~~~~~~~~~~~~~ 102 (109)
+..++.+... .+|||++.++.+. ..++.|..|.+++||+++| |++||+|++|||.++.++++.+....++..+..
T Consensus 25 ~~~~v~L~k~~~glGf~l~~g~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~ 104 (117)
T 2fne_A 25 QCKSITLERGPDGLGFSIVGGYGSPHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGT 104 (117)
T ss_dssp EEEEEEECCBTTBTSEEEEEEEEETTEEEEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCSS
T ss_pred ccEEEEEEeCCCcccEEEecccCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCe
Confidence 3344444443 7999999887543 2368899999999999999 999999999999999988888888888777677
Q ss_pred EEEEEEC
Q psy5188 103 LTLQILR 109 (109)
Q Consensus 103 v~l~v~r 109 (109)
+.+++.|
T Consensus 105 v~l~v~R 111 (117)
T 2fne_A 105 VTLMVLS 111 (117)
T ss_dssp EEEEEEE
T ss_pred EEEEEEe
Confidence 8888865
No 23
>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation, leucine-rich repeat, alternative splicing, cytoplasm, circletail, coiled coil; 1.30A {Homo sapiens}
Probab=99.61 E-value=2.5e-14 Score=81.23 Aligned_cols=80 Identities=28% Similarity=0.503 Sum_probs=66.0
Q ss_pred EEEEecC-CCCccEEEecccC------CCCCeEEEEECCCChhhhCCCCCCCEEEEECCEeCCCCCHHHHHHHHhCCCCe
Q psy5188 30 LKLKKLE-CEAWGFRLTGGRD------FGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNT 102 (109)
Q Consensus 30 ~~~~~~~-~~~~G~~~~~~~~------~~~~~~V~~v~~~~~a~~~Gl~~gD~I~~vng~~v~~~~~~~~~~~~~~~~~~ 102 (109)
+.+.+.+ ..++||++.++.+ ...++.|..|.+++||+++||++||.|+++||.++.++.+.+....++..+..
T Consensus 5 ~~v~~~~~~~glG~~i~~g~~~~~~~~~~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~ 84 (97)
T 2w4f_A 5 LTLTILRQTGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAGVRVGDKLLEVNGVALQGAEHHEAVEALRGAGTA 84 (97)
T ss_dssp EEEEEECBTTBSSEEEEECTTSCCSBTTBCSEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHTSCSE
T ss_pred EEEEEEeCCCceeEEEECCccCCcccCCCCCEEEEEECCCChHHHcCCCCCCEEEEECCEECCCcCHHHHHHHHhCCCCe
Confidence 3444444 4899999987654 23578999999999999999999999999999999999887766666667899
Q ss_pred EEEEEEC
Q psy5188 103 LTLQILR 109 (109)
Q Consensus 103 v~l~v~r 109 (109)
+.+++.|
T Consensus 85 v~l~v~R 91 (97)
T 2w4f_A 85 VQMRVWR 91 (97)
T ss_dssp EEEEEEC
T ss_pred EEEEEEe
Confidence 9999876
No 24
>2awx_A Synapse associated protein 97; membrane protein, synaptic signaling, trafficking protein; HET: HIS; 1.80A {Rattus norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A
Probab=99.60 E-value=3.2e-14 Score=82.01 Aligned_cols=72 Identities=21% Similarity=0.459 Sum_probs=63.6
Q ss_pred CCccEEEecccCC-----CCCeEEEEECCCChhhhCC-CCCCCEEEEECCEeCCCCCHHHHHHHHhCCCCeEEEEEEC
Q psy5188 38 EAWGFRLTGGRDF-----GTPLTVLRVTGTSVAEEGG-MEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQILR 109 (109)
Q Consensus 38 ~~~G~~~~~~~~~-----~~~~~V~~v~~~~~a~~~G-l~~gD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~r 109 (109)
.+|||++.++.+. ..++.|..|.+++||+++| |++||.|++|||.++.+.++.+....++..+..+.+++.|
T Consensus 14 ~glG~~i~gg~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~R 91 (105)
T 2awx_A 14 KGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVSLEEVTHEEAVTALKNTSDFVYLKVAK 91 (105)
T ss_dssp TBSSEEEEECBTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCBHHHHHHHHHSCCSEEEEEEEC
T ss_pred CCCCEEEeCccCCCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEc
Confidence 7999999987643 2479999999999999999 9999999999999999888888888888778899998876
No 25
>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; transferase, STRU genomics, structural genomics consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo sapiens}
Probab=99.60 E-value=3.7e-14 Score=82.69 Aligned_cols=81 Identities=36% Similarity=0.631 Sum_probs=67.7
Q ss_pred EEEEEEecCCCCccEEEecccCCCCCeEEEEECCCChhhhCC-CCCCCEEEEECCEeCCCCCHHHHHHHHhCCCCeEEEE
Q psy5188 28 EELKLKKLECEAWGFRLTGGRDFGTPLTVLRVTGTSVAEEGG-MEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQ 106 (109)
Q Consensus 28 ~~~~~~~~~~~~~G~~~~~~~~~~~~~~V~~v~~~~~a~~~G-l~~gD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~ 106 (109)
..+.+.+ ...+|||++.++.+...++.|..|.+++||+++| |++||+|++|||.++.++++.+....++..+..+.++
T Consensus 26 ~~v~l~~-~~~glG~~l~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~g~~v~l~ 104 (112)
T 2r4h_A 26 YTVELER-GAKGFGFSLRGGREYNMDLYVLRLAEDGPAERSGKMRIGDEILEINGETTKNMKHSRAIELIKNGGRRVRLF 104 (112)
T ss_dssp EEEEEEC-BTTBTSEEEEECGGGTCCEEEEEECTTSHHHHTTCCCTTCEEEEETTEECTTCCHHHHHHHHHTTTTEEEEE
T ss_pred EEEEEEc-CCCccCEEEeccccCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEE
Confidence 3444443 2378999998876555689999999999999999 9999999999999999988888777777778889998
Q ss_pred EEC
Q psy5188 107 ILR 109 (109)
Q Consensus 107 v~r 109 (109)
+.|
T Consensus 105 v~R 107 (112)
T 2r4h_A 105 LKR 107 (112)
T ss_dssp EEC
T ss_pred EEe
Confidence 876
No 26
>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=99.60 E-value=2.4e-14 Score=85.83 Aligned_cols=82 Identities=27% Similarity=0.440 Sum_probs=69.9
Q ss_pred EEEEEEecCCCCccEEEecccCCC------------CCeEEEEECCCChhhhCCCCCCCEEEEECCEeCCCCCHHHHHHH
Q psy5188 28 EELKLKKLECEAWGFRLTGGRDFG------------TPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQH 95 (109)
Q Consensus 28 ~~~~~~~~~~~~~G~~~~~~~~~~------------~~~~V~~v~~~~~a~~~Gl~~gD~I~~vng~~v~~~~~~~~~~~ 95 (109)
+.+.+.+.+..+|||++.++.... .+++|..|.+++||+++||++||+|++|||.++.++++.+....
T Consensus 29 r~v~l~r~~~~g~Gf~i~g~~~~~~~~~~~~~~~~~~gv~V~~V~~gspA~~aGL~~GD~Il~Vng~~v~~~~~~~~~~~ 108 (132)
T 3l4f_D 29 KTVLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQVVNM 108 (132)
T ss_dssp CEEEEECCTTSCCCEEEEEECCSSCCSCCCCCTTSCCSEEEEEECTTSGGGGGTCCTTCEEEEESSSBCTTSCHHHHHHH
T ss_pred EEEEEEECCCCcEeEEEeccCCCCccccccccccCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHH
Confidence 556676656689999999876521 25899999999999999999999999999999999999988888
Q ss_pred HhCCCCeEEEEEEC
Q psy5188 96 IIGSGNTLTLQILR 109 (109)
Q Consensus 96 ~~~~~~~v~l~v~r 109 (109)
++..+..+.+++.|
T Consensus 109 l~~~g~~v~l~v~~ 122 (132)
T 3l4f_D 109 IRQGGNTLMVKVVM 122 (132)
T ss_dssp HHHTTTEEEEEEEC
T ss_pred HHcCCCEEEEEEEE
Confidence 88888899888864
No 27
>2opg_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 1.50A {Homo sapiens}
Probab=99.60 E-value=4.2e-14 Score=80.43 Aligned_cols=80 Identities=23% Similarity=0.313 Sum_probs=65.9
Q ss_pred EEEEecC-CCCccEEEecccCCC-CCeEEEEECCCChhhhCC-CCCCCEEEEECCEeCCCCCHHHHHHHHhCCCCeEEEE
Q psy5188 30 LKLKKLE-CEAWGFRLTGGRDFG-TPLTVLRVTGTSVAEEGG-MEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQ 106 (109)
Q Consensus 30 ~~~~~~~-~~~~G~~~~~~~~~~-~~~~V~~v~~~~~a~~~G-l~~gD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~ 106 (109)
+.+.+.. ..++||++.++.+.. .++.|..+.+++||+.+| |++||.|++|||.++.++++.+....++..+..+.++
T Consensus 6 ~~v~l~~~~~~lG~~l~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~ 85 (98)
T 2opg_A 6 TTIEISKGRTGLGLSIVGGSDTLLGAIIIHEVYEEGAACKDGRLWAGDQILEVNGIDLRKATHDEAINVLRQTPQRVRLT 85 (98)
T ss_dssp EEEEEECBTTBTCEEEEECTTSTTCSEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSEEEEE
T ss_pred EEEEEEECCCcccEEEecCCCCCCCCEEEEEECCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEE
Confidence 3443433 378999998776543 479999999999999999 9999999999999999988888777777777888888
Q ss_pred EEC
Q psy5188 107 ILR 109 (109)
Q Consensus 107 v~r 109 (109)
+.|
T Consensus 86 v~R 88 (98)
T 2opg_A 86 LYR 88 (98)
T ss_dssp EEE
T ss_pred EEc
Confidence 865
No 28
>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane, mitochondria distribution, PDZ, membrane, scaffold, mitochondrion, membrane protein; 1.35A {Homo sapiens} PDB: 2jin_A
Probab=99.60 E-value=4.4e-14 Score=80.83 Aligned_cols=81 Identities=28% Similarity=0.498 Sum_probs=67.3
Q ss_pred EEEEEEecCCCCccEEEecccCC-----CCCeEEEEECCCChhhhCC-CCCCCEEEEECCEeCCCCCHHHHHHHHhCCCC
Q psy5188 28 EELKLKKLECEAWGFRLTGGRDF-----GTPLTVLRVTGTSVAEEGG-MEVGDMIVSINGQCTQAMTHVEAQQHIIGSGN 101 (109)
Q Consensus 28 ~~~~~~~~~~~~~G~~~~~~~~~-----~~~~~V~~v~~~~~a~~~G-l~~gD~I~~vng~~v~~~~~~~~~~~~~~~~~ 101 (109)
+.+++.+ +..+|||++.++.+. ..++.|..|.+++||+++| |++||.|++|||.++.++++.+....++..+.
T Consensus 9 ~~v~l~~-~~~~lG~~l~~g~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~ 87 (101)
T 2jik_A 9 EEINLTR-GPSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRNAGY 87 (101)
T ss_dssp EEEEEEC-CTTCCCEEEEECTTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHTCCS
T ss_pred EEEEEEe-CCCCCCEEEeccccCCCccCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCC
Confidence 4445544 338999999987653 2478999999999999999 99999999999999999888888777777778
Q ss_pred eEEEEEEC
Q psy5188 102 TLTLQILR 109 (109)
Q Consensus 102 ~v~l~v~r 109 (109)
.+.+++.|
T Consensus 88 ~v~l~v~R 95 (101)
T 2jik_A 88 AVSLRVQH 95 (101)
T ss_dssp EEEEEEEE
T ss_pred eEEEEEEe
Confidence 88888865
No 29
>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural genomics, structural GEN consortium, SGC, structural protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1 PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A
Probab=99.59 E-value=5.4e-14 Score=79.38 Aligned_cols=80 Identities=21% Similarity=0.444 Sum_probs=65.7
Q ss_pred EEEEEecCCCCccEEEecccCC-----CCCeEEEEECCCChhhhCC-CCCCCEEEEECCEeCCCCCHHHHHHHHhCCCCe
Q psy5188 29 ELKLKKLECEAWGFRLTGGRDF-----GTPLTVLRVTGTSVAEEGG-MEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNT 102 (109)
Q Consensus 29 ~~~~~~~~~~~~G~~~~~~~~~-----~~~~~V~~v~~~~~a~~~G-l~~gD~I~~vng~~v~~~~~~~~~~~~~~~~~~ 102 (109)
++++.+ ...+|||++.++.+. ..++.|..+.+++||+++| |++||.|++|||.++.++++.+....++..+..
T Consensus 6 ~v~l~k-~~~g~G~~i~gg~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~ 84 (94)
T 2fe5_A 6 EVNLLK-GPKGLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDM 84 (94)
T ss_dssp EEEEEC-CTTCSCEEEEECBTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCBHHHHHHHHHTCCSE
T ss_pred EEEEEE-CCCCCCEEEEcccCCCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCe
Confidence 344443 247899999976543 2378999999999999999 999999999999999998888877777777778
Q ss_pred EEEEEEC
Q psy5188 103 LTLQILR 109 (109)
Q Consensus 103 v~l~v~r 109 (109)
+.+++.|
T Consensus 85 v~l~v~R 91 (94)
T 2fe5_A 85 VYLKVAK 91 (94)
T ss_dssp EEEEEEC
T ss_pred EEEEEEc
Confidence 8898876
No 30
>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.59 E-value=3.9e-15 Score=84.28 Aligned_cols=81 Identities=44% Similarity=0.705 Sum_probs=69.2
Q ss_pred EEEEEecCCCCccEEEecccCCCCCeEEEEECCCChhhhCCCCCCCEEEEECCEeCCCCCHHHHHHHHhCCCCeEEEEEE
Q psy5188 29 ELKLKKLECEAWGFRLTGGRDFGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQIL 108 (109)
Q Consensus 29 ~~~~~~~~~~~~G~~~~~~~~~~~~~~V~~v~~~~~a~~~Gl~~gD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~ 108 (109)
.+.+.+.+..+|||++.++.+...++.|..|.+++||+++||++||.|+++||.++.++++.+....++..+..+.+++.
T Consensus 7 ~~~~~~~~~~~lG~~l~~g~~~~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~ 86 (94)
T 1vb7_A 7 GLTVDVAGPAPWGFRISGGRDFHTPIIVTKVTERGKAEAADLRPGDIIVAINGQSAENMLHAEAQSKIRQSASPLRLQLD 86 (94)
T ss_dssp CEEEEECSSSCCSBCCEEETTTTEEEECCCBCTTSSHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSSEEEEEE
T ss_pred EEEEEecCCCCccEEEecccCCCCCeEEEEECCCCHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCcEEEEEE
Confidence 35666767789999998876655578899999999999999999999999999999998888877777776688889887
Q ss_pred C
Q psy5188 109 R 109 (109)
Q Consensus 109 r 109 (109)
|
T Consensus 87 R 87 (94)
T 1vb7_A 87 R 87 (94)
T ss_dssp C
T ss_pred E
Confidence 6
No 31
>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A 1vj6_A 1gm1_A 1ozi_A
Probab=99.59 E-value=8.8e-14 Score=78.82 Aligned_cols=73 Identities=25% Similarity=0.409 Sum_probs=64.0
Q ss_pred CCCccEEEecccCC---CCCeEEEEECCCChhhhCC-CCCCCEEEEECCEeCCCCCHHHHHHHHhCCCCeEEEEEEC
Q psy5188 37 CEAWGFRLTGGRDF---GTPLTVLRVTGTSVAEEGG-MEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQILR 109 (109)
Q Consensus 37 ~~~~G~~~~~~~~~---~~~~~V~~v~~~~~a~~~G-l~~gD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~r 109 (109)
..+|||++.++.+. ..++.|..+.+++||+++| |++||.|++|||.++.++++.+....++..+..+.+++.|
T Consensus 15 ~~~lG~~i~~g~~~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~g~~v~l~v~R 91 (96)
T 1d5g_A 15 DNSLGISVTGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEK 91 (96)
T ss_dssp SSSCCEEEECCSSSCSSSSCCEEEEECTTSHHHHTTCCCTTCEEEEETTEECTTCCHHHHHHHHHSCCSEEEEEEEC
T ss_pred CCCCCEEEECCCCCCCCcCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEc
Confidence 48999999987543 2478999999999999999 9999999999999999988888888888778889998876
No 32
>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.7A {Homo sapiens} PDB: 2iwp_A
Probab=99.59 E-value=8.3e-15 Score=86.51 Aligned_cols=82 Identities=27% Similarity=0.472 Sum_probs=66.7
Q ss_pred EEEEEEecCCCCccEEEecccCC---CCCeEEEEECCCChhhhC-CCCCCCEEEEECCEeCCCCCHHHHHHHHhCCCCeE
Q psy5188 28 EELKLKKLECEAWGFRLTGGRDF---GTPLTVLRVTGTSVAEEG-GMEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTL 103 (109)
Q Consensus 28 ~~~~~~~~~~~~~G~~~~~~~~~---~~~~~V~~v~~~~~a~~~-Gl~~gD~I~~vng~~v~~~~~~~~~~~~~~~~~~v 103 (109)
+.+.+.+....+|||++.++.+. ..+++|..|.+++||+++ ||++||+|++|||.++.++++.+....++..+..+
T Consensus 26 ~~v~l~k~~~~~lGf~i~gg~~~~~~~~~~~V~~V~~~spA~~aggL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~~~~v 105 (120)
T 2iwo_A 26 RTVEMKKGPTDSLGISIAGGVGSPLGDVPIFIAMMHPTGVAAQTQKLRVGDRIVTICGTSTEGMTHTQAVNLLKNASGSI 105 (120)
T ss_dssp EEEEEEC----CCCEEEEEEEEETTEEEEEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCBHHHHHHHHHHCCSEE
T ss_pred EEEEEEcCCCCCCCEEEecccCCCCCCCCEEEEEECCCCHHHHhCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeE
Confidence 55556554446999999987542 236889999999999998 89999999999999999999999888888888889
Q ss_pred EEEEEC
Q psy5188 104 TLQILR 109 (109)
Q Consensus 104 ~l~v~r 109 (109)
.+++.|
T Consensus 106 ~l~v~r 111 (120)
T 2iwo_A 106 EMQVVA 111 (120)
T ss_dssp EEEEEC
T ss_pred EEEEEE
Confidence 999876
No 33
>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding site complex, protein binding; 1.43A {Homo sapiens} SCOP: b.36.1.1 PDB: 3nfl_A 2vph_A
Probab=99.59 E-value=1.7e-14 Score=83.38 Aligned_cols=82 Identities=29% Similarity=0.353 Sum_probs=68.1
Q ss_pred EEEEEEecCCCCccEEEecccCCCCCeEEEEECCCChhhhCC--CCCCCEEEEECCEeCCCCCHHHHHHHHhCCC----C
Q psy5188 28 EELKLKKLECEAWGFRLTGGRDFGTPLTVLRVTGTSVAEEGG--MEVGDMIVSINGQCTQAMTHVEAQQHIIGSG----N 101 (109)
Q Consensus 28 ~~~~~~~~~~~~~G~~~~~~~~~~~~~~V~~v~~~~~a~~~G--l~~gD~I~~vng~~v~~~~~~~~~~~~~~~~----~ 101 (109)
..+.+.+....+|||.+.++.+...+++|..|.+++||+++| |++||+|++|||.++.++++.+....++..+ .
T Consensus 19 ~~v~l~~~~~~~~G~~~~gg~~~~~~~~V~~V~~~spA~~aG~rL~~GD~Il~ing~~v~~~~~~~~~~~i~~~~~~~~~ 98 (107)
T 3nfk_A 19 VLIRMKPDENGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIKASCERHSG 98 (107)
T ss_dssp EEEEECCCTTSCCCEEEEEEGGGTEEEEEEEECTTSHHHHSSSCCCTTCEEEEETTEECTTCCHHHHHHHHHCGGGSBTT
T ss_pred EEEEEEcCCCCCCCEEEEccCCCCCCeEEEEECCCCchHHcCCccCCCCEEEEECCEECCCCCHHHHHHHHHhccccCCc
Confidence 444444444479999999877655578999999999999999 9999999999999999999988888887764 4
Q ss_pred eEEEEEEC
Q psy5188 102 TLTLQILR 109 (109)
Q Consensus 102 ~v~l~v~r 109 (109)
.+.+++.|
T Consensus 99 ~v~l~v~r 106 (107)
T 3nfk_A 99 ELMLLVRP 106 (107)
T ss_dssp BEEEEEEC
T ss_pred EEEEEEEc
Confidence 88999876
No 34
>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.59 E-value=6.7e-14 Score=81.25 Aligned_cols=82 Identities=29% Similarity=0.513 Sum_probs=68.3
Q ss_pred EEEEEEecCC-CCccEEEecccC------CCCCeEEEEECCCChhhhCCCCCCCEEEEECCEeCCCCCHHHHHHHHhCCC
Q psy5188 28 EELKLKKLEC-EAWGFRLTGGRD------FGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGSG 100 (109)
Q Consensus 28 ~~~~~~~~~~-~~~G~~~~~~~~------~~~~~~V~~v~~~~~a~~~Gl~~gD~I~~vng~~v~~~~~~~~~~~~~~~~ 100 (109)
+.+.+.+.+. .++||.+.++.+ ...++.|..|.+++||+++||++||.|++|||.++.+..+.+....++..+
T Consensus 15 ~~~~~~l~~~~~glG~~i~~g~~~~~~~~~~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~~~~~g 94 (110)
T 1x5q_A 15 EELTLTILRQTGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAGVRVGDKLLEVNGVALQGAEHHEAVEALRGAG 94 (110)
T ss_dssp EEEEEEEECSSSSCSEEEEECTTSCCSSTTCCSEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHSCC
T ss_pred ceEEEEEecCCCeeeEEEEccccCCccccCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCcCHHHHHHHhhCCC
Confidence 4455655554 899999987654 235789999999999999999999999999999999988887777777778
Q ss_pred CeEEEEEEC
Q psy5188 101 NTLTLQILR 109 (109)
Q Consensus 101 ~~v~l~v~r 109 (109)
..+.+++.|
T Consensus 95 ~~v~l~v~R 103 (110)
T 1x5q_A 95 TAVQMRVWR 103 (110)
T ss_dssp SEEEEEEEE
T ss_pred CeEEEEEEE
Confidence 999999876
No 35
>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.59 E-value=3.3e-14 Score=81.84 Aligned_cols=81 Identities=21% Similarity=0.338 Sum_probs=68.3
Q ss_pred EEEEEEecCCCCccEEEecccCCCCCeEEEEECCCChhhhCCCCCCCEEEEECCEeCCCCCHHHHHHHHhCCCCeEEEEE
Q psy5188 28 EELKLKKLECEAWGFRLTGGRDFGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQI 107 (109)
Q Consensus 28 ~~~~~~~~~~~~~G~~~~~~~~~~~~~~V~~v~~~~~a~~~Gl~~gD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v 107 (109)
+.+.+.+....++||.+.++.+...++.|..|.+++||+++||++||+|++|||.++.++++.+....++. +..+.++|
T Consensus 17 ~~v~l~k~~~~~lG~~~~~~~~~~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~-~~~v~l~v 95 (104)
T 1wi2_A 17 RIVTLKKPPGAQLGFNIRGGKASQLGIFISKVIPDSDAHRAGLQEGDQVLAVNDVDFQDIEHSKAVEILKT-AREISMRV 95 (104)
T ss_dssp EEEEECCCTTCCCSEEEECCSSSCCCCEEEEECTTSHHHHHTCCTTCEEEEETTEECSSCCHHHHHHHHHH-SSSEEEEE
T ss_pred EEEEEEeCCCCCccEEEEcccCCCCCEEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhC-CCEEEEEE
Confidence 44555554448999999987665568999999999999999999999999999999998888888777776 67888888
Q ss_pred EC
Q psy5188 108 LR 109 (109)
Q Consensus 108 ~r 109 (109)
.|
T Consensus 96 ~r 97 (104)
T 1wi2_A 96 RF 97 (104)
T ss_dssp EC
T ss_pred EE
Confidence 75
No 36
>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.59 E-value=8.7e-14 Score=82.34 Aligned_cols=82 Identities=29% Similarity=0.428 Sum_probs=68.8
Q ss_pred EEEEEEecCC-CCccEEEecccCCCCCeEEEEECCCChhhhCC-CCCCCEEEEECCEeCCCCCHHHHHHHHhC--CCCeE
Q psy5188 28 EELKLKKLEC-EAWGFRLTGGRDFGTPLTVLRVTGTSVAEEGG-MEVGDMIVSINGQCTQAMTHVEAQQHIIG--SGNTL 103 (109)
Q Consensus 28 ~~~~~~~~~~-~~~G~~~~~~~~~~~~~~V~~v~~~~~a~~~G-l~~gD~I~~vng~~v~~~~~~~~~~~~~~--~~~~v 103 (109)
+.+++.+... .+|||++.++.+...+++|..|.+++||+++| |++||+|++|||.++.++++.+....++. .+..+
T Consensus 19 ~~~~v~l~~~~~glG~~~~~g~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~g~~v 98 (123)
T 1ueq_A 19 TFLSTTLKKSNMGFGFTIIGGDEPDEFLQVKSVIPDGPAAQDGKMETGDVIVYINEVCVLGHTHADVVKLFQSVPIGQSV 98 (123)
T ss_dssp EEEEEEEECCTTSCSEEEECCSSSSCCCEEEEECTTSHHHHTSCCCTTCEEEEETTEECTTSCHHHHHHHHHTSCTTCEE
T ss_pred cEEEEEEEeCCCceeEEEecccCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeE
Confidence 4445544444 79999999877655679999999999999999 99999999999999998888888888876 47889
Q ss_pred EEEEEC
Q psy5188 104 TLQILR 109 (109)
Q Consensus 104 ~l~v~r 109 (109)
.++|.|
T Consensus 99 ~l~v~R 104 (123)
T 1ueq_A 99 NLVLCR 104 (123)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 998875
No 37
>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.59 E-value=1e-14 Score=83.84 Aligned_cols=74 Identities=24% Similarity=0.422 Sum_probs=64.5
Q ss_pred CCCCccEEEecccCCCCCeEEEEECCCChhhhCC-CCCCCEEEEECCEeCCCCCHHHHHHHHhCC--CCeEEEEEEC
Q psy5188 36 ECEAWGFRLTGGRDFGTPLTVLRVTGTSVAEEGG-MEVGDMIVSINGQCTQAMTHVEAQQHIIGS--GNTLTLQILR 109 (109)
Q Consensus 36 ~~~~~G~~~~~~~~~~~~~~V~~v~~~~~a~~~G-l~~gD~I~~vng~~v~~~~~~~~~~~~~~~--~~~v~l~v~r 109 (109)
...+|||.+.++.+...+++|..|.+++||+++| |++||+|++|||.++.++++.++...++.. +..+.+++.|
T Consensus 18 ~~~g~G~~i~~g~~~~~~~~V~~V~~~spA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R 94 (103)
T 1uep_A 18 MESGFGFRILGGDEPGQPILIGAVIAMGSADRDGRLHPGDELVYVDGIPVAGKTHRYVIDLMHHAARNGQVNLTVRR 94 (103)
T ss_dssp SSSSCCEEECCCCSTTSCCBEEEECTTSTTGGGTCCCTTCEEEEETTEECTTSCHHHHHHHHHHHHHHTEEEEEEEE
T ss_pred CCCccCEEEeeecCCCCCeEEEEeCCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCcEEEEEEe
Confidence 3478999999877655688999999999999999 999999999999999988888887777664 6889998875
No 38
>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation, structural genomics, structural genomics consortium, SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A
Probab=99.59 E-value=4.4e-14 Score=79.22 Aligned_cols=80 Identities=21% Similarity=0.346 Sum_probs=66.5
Q ss_pred EEEEEEecCCCCccEEEecccCCCCCeEEEEECCCChhhhCCCCCCCEEEEECCEeCCCCCHHHHHHHHhCCCCeEEEEE
Q psy5188 28 EELKLKKLECEAWGFRLTGGRDFGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQI 107 (109)
Q Consensus 28 ~~~~~~~~~~~~~G~~~~~~~~~~~~~~V~~v~~~~~a~~~Gl~~gD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v 107 (109)
+.+++.+ +..+|||.+.++.+ ..++.|..|.+++||+.+||++||.|++|||.++.++++.+....++..+..+.+++
T Consensus 6 r~v~l~k-~~~g~G~~~~~~~~-~~gv~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v 83 (90)
T 2he4_A 6 RLCHLRK-GPQGYGFNLHSDKS-RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLV 83 (90)
T ss_dssp EEEEEEC-BTTBCCEEEEECSS-SSSEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTSCHHHHHHHHTTSSSEEEEEE
T ss_pred EEEEEEE-CCCCccEEEEccCC-CCCEEEEEECCCChHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCcEEEEE
Confidence 3445544 33789999987654 347999999999999999999999999999999999988888888877788999988
Q ss_pred EC
Q psy5188 108 LR 109 (109)
Q Consensus 108 ~r 109 (109)
.|
T Consensus 84 ~r 85 (90)
T 2he4_A 84 VG 85 (90)
T ss_dssp EC
T ss_pred Ec
Confidence 76
No 39
>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction, structural genom structural genomics consortium, SGC, signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A 3rl7_B 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A
Probab=99.59 E-value=4.7e-14 Score=80.83 Aligned_cols=79 Identities=20% Similarity=0.372 Sum_probs=66.1
Q ss_pred EEEEecCCCCccEEEecccCC-----CCCeEEEEECCCChhhhCC-CCCCCEEEEECCEeCCCCCHHHHHHHHhCCCCeE
Q psy5188 30 LKLKKLECEAWGFRLTGGRDF-----GTPLTVLRVTGTSVAEEGG-MEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTL 103 (109)
Q Consensus 30 ~~~~~~~~~~~G~~~~~~~~~-----~~~~~V~~v~~~~~a~~~G-l~~gD~I~~vng~~v~~~~~~~~~~~~~~~~~~v 103 (109)
+.+.+ ...+|||++.++.+. ..+++|..+.+++||+++| |++||.|++|||.++.+.++.+....++..+..+
T Consensus 8 v~l~k-~~~glG~~i~~g~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v 86 (102)
T 2i1n_A 8 IVLER-GNSGLGFSIAGGIDNPHVPDDPGIFITKIIPGGAAAMDGRLGVNDCVLRVNEVDVSEVVHSRAVEALKEAGPVV 86 (102)
T ss_dssp EEEEC-BTTBTSEEEEECTTSCSSTTCCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHHSCSEE
T ss_pred EEEEE-CCCcCCEEEEcccCCCCcCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeE
Confidence 44433 247899999987543 3479999999999999999 9999999999999999988888777777778899
Q ss_pred EEEEEC
Q psy5188 104 TLQILR 109 (109)
Q Consensus 104 ~l~v~r 109 (109)
.+++.|
T Consensus 87 ~l~v~R 92 (102)
T 2i1n_A 87 RLVVRR 92 (102)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 998865
No 40
>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling protein; 1.80A {Mus musculus} SCOP: b.36.1.0
Probab=99.58 E-value=4.6e-14 Score=81.41 Aligned_cols=81 Identities=31% Similarity=0.401 Sum_probs=67.9
Q ss_pred EEEEEEecCCCCccEEEecccCCCCCeEEEEECCCChhhhCCCCCCCEEEEECCEeCCCCCHHHHHHHHhCCCCeEEEEE
Q psy5188 28 EELKLKKLECEAWGFRLTGGRDFGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQI 107 (109)
Q Consensus 28 ~~~~~~~~~~~~~G~~~~~~~~~~~~~~V~~v~~~~~a~~~Gl~~gD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v 107 (109)
+.+.+.+....++||.+....+. .++.|..|.+++||+.+||++||.|++|||.++.++++.+....++..+..+.+++
T Consensus 3 r~v~l~~~~~~~~G~~l~~~~~~-~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v 81 (106)
T 3ngh_A 3 RESKLSKQEGQNYGFFLRIEKDT-DGHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVDKEEHAQVVELVRKSGNSVTLLV 81 (106)
T ss_dssp EEEEEECCTTCCCCCEEECCTTC-CSCEEECCCTTSHHHHTTCCTTCEEEEETTEECTTSCHHHHHHHHHHTTTEEEEEE
T ss_pred EEEEEEeCCCCeeCEEEEEEeCC-CCEEEEEeCCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCEEEEEE
Confidence 44566665558899998876543 36889999999999999999999999999999999988887777777788999998
Q ss_pred EC
Q psy5188 108 LR 109 (109)
Q Consensus 108 ~r 109 (109)
.|
T Consensus 82 ~r 83 (106)
T 3ngh_A 82 LD 83 (106)
T ss_dssp EC
T ss_pred EE
Confidence 76
No 41
>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two alpha-helices, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1
Probab=99.58 E-value=9.8e-14 Score=77.91 Aligned_cols=79 Identities=25% Similarity=0.290 Sum_probs=64.4
Q ss_pred EEEEecCC-CCccEEEecccCCCCCeEEEEECCCChhhhCCCCCCCEEEEECCEeCCCCCHHHHHHHHhCCCCeEEEEEE
Q psy5188 30 LKLKKLEC-EAWGFRLTGGRDFGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQIL 108 (109)
Q Consensus 30 ~~~~~~~~-~~~G~~~~~~~~~~~~~~V~~v~~~~~a~~~Gl~~gD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~ 108 (109)
+++.+... .+|||++.++... .++.|..+.+++||+++||++||.|+++||.++.++.+.+....++..+..+.+++.
T Consensus 10 v~l~k~~~~~~~G~~~~~~~~~-~gv~V~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~l~v~ 88 (91)
T 1m5z_A 10 VTLYKDSGMEDFGFSVADGLLE-KGVYVKNIRPAGPGDLGGLKPYDRLLQVNHVRTRDFDCCLVVPLIAESGNKLDLVIS 88 (91)
T ss_dssp EEEECCTTCSSSSEEEEECTTS-SCEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHTSTTEEEEEEE
T ss_pred EEEEECCCCCCccEEEEeccCC-CCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEEEEE
Confidence 34443333 5899999876543 478999999999999999999999999999999998887777777777888888887
Q ss_pred C
Q psy5188 109 R 109 (109)
Q Consensus 109 r 109 (109)
|
T Consensus 89 R 89 (91)
T 1m5z_A 89 R 89 (91)
T ss_dssp E
T ss_pred e
Confidence 5
No 42
>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic domain associated protein, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.58 E-value=7.4e-14 Score=80.72 Aligned_cols=82 Identities=24% Similarity=0.408 Sum_probs=67.7
Q ss_pred EEEEEEecCC-CCccEEEecccCC--------CCCeEEEEECCCChhhhC-CCCCCCEEEEECCEeCCCCCHHHHHHHHh
Q psy5188 28 EELKLKKLEC-EAWGFRLTGGRDF--------GTPLTVLRVTGTSVAEEG-GMEVGDMIVSINGQCTQAMTHVEAQQHII 97 (109)
Q Consensus 28 ~~~~~~~~~~-~~~G~~~~~~~~~--------~~~~~V~~v~~~~~a~~~-Gl~~gD~I~~vng~~v~~~~~~~~~~~~~ 97 (109)
+.+++.+... .+|||++.++.+. ..+++|..|.+++||+++ ||++||+|++|||.++.+.++.+....++
T Consensus 8 ~~~~v~l~k~~~~lG~~i~g~~~~~~~~~~~~~~gv~V~~V~~~spA~~aggL~~GD~Il~vng~~v~~~~~~~~~~~~~ 87 (107)
T 1uhp_A 8 KSLTLVLHRDSGSLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRIIEVNGRDLSRATHDQAVEAFK 87 (107)
T ss_dssp EEEEEEECCSSSCCSEEEECCCSCCCCTTSSCSCCCEEEEECSSSHHHHTTCCCSSCEEEEETTEECTTCCHHHHHHHHH
T ss_pred EEEEEEEEeCCCccCEEEEcCCCCcccccccCCCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence 3445555444 8999999886532 347999999999999999 89999999999999999988988888887
Q ss_pred CCCCeEEEEEEC
Q psy5188 98 GSGNTLTLQILR 109 (109)
Q Consensus 98 ~~~~~v~l~v~r 109 (109)
..+..+.+++.|
T Consensus 88 ~~~~~v~l~v~R 99 (107)
T 1uhp_A 88 TAKEPIVVQVLR 99 (107)
T ss_dssp HCCSSEEEEEEE
T ss_pred cCCCcEEEEEEe
Confidence 777888888865
No 43
>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc, LNX2_human, zinc-finger, polymorphism, ring finger protein 1; 1.3A {Homo sapiens}
Probab=99.58 E-value=7e-14 Score=79.15 Aligned_cols=71 Identities=28% Similarity=0.357 Sum_probs=62.2
Q ss_pred CCccEEEecccCCCCCeEEEEECCCChhhhCC-CCCCCEEEEECCEeCCCCCHHHHHHHHhCCCCeEEEEEEC
Q psy5188 38 EAWGFRLTGGRDFGTPLTVLRVTGTSVAEEGG-MEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQILR 109 (109)
Q Consensus 38 ~~~G~~~~~~~~~~~~~~V~~v~~~~~a~~~G-l~~gD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~r 109 (109)
.++||++.++.+. .+++|..+.+++||+++| |++||.|++|||.++.+.++.+....++..+..+.+++.|
T Consensus 16 ~~lG~~~~~~~~~-~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~l~v~R 87 (95)
T 2vwr_A 16 EQLGIKLVRRTDE-PGVFILDLLEGGLAAQDGRLSSNDRVLAINGHDLKYGTPELAAQIIQASGERVNLTIAR 87 (95)
T ss_dssp CCCCEEEEECSSS-CSEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCSEEEEEEEE
T ss_pred CcccEEEEeccCC-CCEEEEEeCCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEEEEEc
Confidence 6899999876543 479999999999999999 9999999999999999988888777777778899998875
No 44
>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A* 1t2m_A 2ain_A
Probab=99.58 E-value=4.8e-14 Score=81.36 Aligned_cols=82 Identities=16% Similarity=0.312 Sum_probs=68.9
Q ss_pred EEEEEEecCCCCccEEEecccC---CCCCeEEEEECCCChhhhCC-CCCCCEEEEECCEeCCCCCHHHHHHHHhCCCCeE
Q psy5188 28 EELKLKKLECEAWGFRLTGGRD---FGTPLTVLRVTGTSVAEEGG-MEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTL 103 (109)
Q Consensus 28 ~~~~~~~~~~~~~G~~~~~~~~---~~~~~~V~~v~~~~~a~~~G-l~~gD~I~~vng~~v~~~~~~~~~~~~~~~~~~v 103 (109)
+.+++.+.+..+|||++.++.+ ...+++|..|.+++||+++| |++||.|++|||.++.+.++.+....++..+..+
T Consensus 11 ~~~~v~l~~~~glG~~i~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~v 90 (106)
T 3axa_A 11 EIITVTLKKQNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAELMTRTSSVV 90 (106)
T ss_dssp CEEEEEEECSSSCSEEEEEEECSSCSSEEEEEEEEBTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSEE
T ss_pred eEEEEEECCCCccCEEEEeecCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeE
Confidence 4456665566899999987532 23468899999999999999 9999999999999999988988888887788899
Q ss_pred EEEEEC
Q psy5188 104 TLQILR 109 (109)
Q Consensus 104 ~l~v~r 109 (109)
.+++.|
T Consensus 91 ~l~v~R 96 (106)
T 3axa_A 91 TLEVAK 96 (106)
T ss_dssp EEEEEC
T ss_pred EEEEEe
Confidence 999876
No 45
>2jil_A GRIP1 protein, glutamate receptor interacting protein-1; endoplasmic reticulum, postsynaptic membrane, membrane, MEMB protein; 1.5A {Homo sapiens}
Probab=99.58 E-value=3.4e-14 Score=80.71 Aligned_cols=80 Identities=24% Similarity=0.382 Sum_probs=66.0
Q ss_pred EEEEecCC-CCccEEEecccCC----CCCeEEEEECCCChhhhCC-CCCCCEEEEECCEeCCCCCHHHHHHHHhCCCCeE
Q psy5188 30 LKLKKLEC-EAWGFRLTGGRDF----GTPLTVLRVTGTSVAEEGG-MEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTL 103 (109)
Q Consensus 30 ~~~~~~~~-~~~G~~~~~~~~~----~~~~~V~~v~~~~~a~~~G-l~~gD~I~~vng~~v~~~~~~~~~~~~~~~~~~v 103 (109)
+++.+... .+|||++.++.+. ..++.|..+.+++||+++| |++||.|++|||.++.++++.+....++..+..+
T Consensus 5 ~~v~l~k~~~~lG~~i~~~~~~~~~~~~~~~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v 84 (97)
T 2jil_A 5 VEVTLHKEGNTFGFVIRGGAHDDRNKSRPVVITSVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQCGQEA 84 (97)
T ss_dssp EEEEEECBTTBCSEEEEEECCSCC--CEEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHHSCSEE
T ss_pred EEEEEEeCCCccCEEEeCcccCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeE
Confidence 34444444 7999999877532 3468899999999999999 9999999999999999988888887777778899
Q ss_pred EEEEEC
Q psy5188 104 TLQILR 109 (109)
Q Consensus 104 ~l~v~r 109 (109)
.+++.|
T Consensus 85 ~l~v~R 90 (97)
T 2jil_A 85 ALLIEY 90 (97)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 998875
No 46
>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A {Homo sapiens}
Probab=99.58 E-value=7.1e-14 Score=79.26 Aligned_cols=81 Identities=26% Similarity=0.420 Sum_probs=65.8
Q ss_pred EEEEEEecCCCCccEEEeccc--CCCCCeEEEEECCCChhhhCCCCCCCEEEEECCEeCCCCCHHHHHHHHhCCCCeEEE
Q psy5188 28 EELKLKKLECEAWGFRLTGGR--DFGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTL 105 (109)
Q Consensus 28 ~~~~~~~~~~~~~G~~~~~~~--~~~~~~~V~~v~~~~~a~~~Gl~~gD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l 105 (109)
+.+.+.+. ..++||++.+.. +...++.|..|.+++||+.+||++||.|++|||.++.++++.+....++..+..+.+
T Consensus 5 r~v~l~k~-~~~~G~~l~~~~~~~~~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l 83 (96)
T 2v90_A 5 RCLHLEKG-PQGFGFLLREEKGLDGRPGQFLWEVDPGLPAKKAGMQAGDRLVAVAGESVEGLGHEETVSRIQGQGSCVSL 83 (96)
T ss_dssp EEEEEECB-TTBSCEEEEEEECTTSCEEEEEEEECTTSHHHHTTCCTTEEEEEETTEECTTCCHHHHHHHHHTTTTEEEE
T ss_pred EEEEEEeC-CCcccEEEEeccCCCCCCCeEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEE
Confidence 44455443 369999997632 233468899999999999999999999999999999998888888888777889999
Q ss_pred EEEC
Q psy5188 106 QILR 109 (109)
Q Consensus 106 ~v~r 109 (109)
++.|
T Consensus 84 ~v~r 87 (96)
T 2v90_A 84 TVVD 87 (96)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 9876
No 47
>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=4.7e-14 Score=79.50 Aligned_cols=81 Identities=26% Similarity=0.476 Sum_probs=67.7
Q ss_pred EEEEEEecCCCCccEEEecccCCCCCeEEEEECCCChhhhCC-CCCCCEEEEECCEeCCCCCHHHHHHHHhCCCCeEEEE
Q psy5188 28 EELKLKKLECEAWGFRLTGGRDFGTPLTVLRVTGTSVAEEGG-MEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQ 106 (109)
Q Consensus 28 ~~~~~~~~~~~~~G~~~~~~~~~~~~~~V~~v~~~~~a~~~G-l~~gD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~ 106 (109)
+.+++.+ ...+|||++.++.+...++.|..|.+++||+++| |++||.|++|||.++.++++.+....++..+..+.++
T Consensus 7 r~v~l~k-~~~glG~~l~~~~~~~~~~~V~~V~~~spA~~aGgl~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~ 85 (93)
T 2dkr_A 7 GVVELPK-TDEGLGFNIMGGKEQNSPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEGEQHEKAVELLKAAQGSVKLV 85 (93)
T ss_dssp CEEEEEC-CTTCCCEEEECSSSSSCCCEEEEECTTSHHHHHCCCCTTCBEEEETTEECTTSCHHHHHHHHHHCCSEEEEE
T ss_pred EEEEEEe-CCCCccEEEecccCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCcEEEE
Confidence 4455554 3489999999876656689999999999999996 9999999999999999888888887777666788888
Q ss_pred EEC
Q psy5188 107 ILR 109 (109)
Q Consensus 107 v~r 109 (109)
+.|
T Consensus 86 v~r 88 (93)
T 2dkr_A 86 VRS 88 (93)
T ss_dssp ECC
T ss_pred EEe
Confidence 865
No 48
>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal peptide complex, high affnity ligand, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A
Probab=99.57 E-value=2.4e-14 Score=82.23 Aligned_cols=81 Identities=26% Similarity=0.345 Sum_probs=68.0
Q ss_pred EEEEEEecCCCCccEEEecccC--------CCCCeEEEEECCCChhhhCCCCCCCEEEEECCEeCCCCCHHHHHHHHhCC
Q psy5188 28 EELKLKKLECEAWGFRLTGGRD--------FGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGS 99 (109)
Q Consensus 28 ~~~~~~~~~~~~~G~~~~~~~~--------~~~~~~V~~v~~~~~a~~~Gl~~gD~I~~vng~~v~~~~~~~~~~~~~~~ 99 (109)
+.+.+.+....+|||++.++.+ ...++.|..|.+++||++ ||++||.|++|||.++.+.++.+....++..
T Consensus 11 ~~~~v~l~~~~~lG~~i~gg~~~~~~p~~~~~~gv~V~~V~~~spA~~-gL~~GD~I~~vng~~v~~~~~~~~~~~~~~~ 89 (103)
T 1n7t_A 11 QEIRVRVEKDPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK-LLQPGDKIIQANGYSFINIEHGQAVSLLKTF 89 (103)
T ss_dssp CCEEEEEECSSCCCBEEEECTTSSBCSSCSSCCSEECCCBSSSSTTSS-SCCTTCEEEEETTEECSSCCHHHHHHHHHHC
T ss_pred EEEEEEEccCCCccEEEEcccCCCCCccccCCCCEEEEEECCCCchHH-CCCCCCEEEEECCEECCCCCHHHHHHHhhcC
Confidence 3455666666799999988653 334789999999999999 9999999999999999998888877777777
Q ss_pred CCeEEEEEEC
Q psy5188 100 GNTLTLQILR 109 (109)
Q Consensus 100 ~~~v~l~v~r 109 (109)
+..+.+++.|
T Consensus 90 g~~v~l~v~R 99 (103)
T 1n7t_A 90 QNTVELIIVR 99 (103)
T ss_dssp CSEEEEEEEC
T ss_pred CCeEEEEEEe
Confidence 8899999876
No 49
>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A 3o5n_A*
Probab=99.57 E-value=9.8e-14 Score=80.45 Aligned_cols=82 Identities=27% Similarity=0.440 Sum_probs=66.7
Q ss_pred EEEEEEecCCCCccEEEecccCCC------------CCeEEEEECCCChhhhCCCCCCCEEEEECCEeCCCCCHHHHHHH
Q psy5188 28 EELKLKKLECEAWGFRLTGGRDFG------------TPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQH 95 (109)
Q Consensus 28 ~~~~~~~~~~~~~G~~~~~~~~~~------------~~~~V~~v~~~~~a~~~Gl~~gD~I~~vng~~v~~~~~~~~~~~ 95 (109)
+.+.+.+....+|||++.++.... .++.|..|.+++||+++||++||+|++|||.++.++++.+....
T Consensus 9 ~~v~l~~~~~~g~G~~l~~~~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~~~~~~~~ 88 (109)
T 1q3o_A 9 KTVLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQVVNM 88 (109)
T ss_dssp EEEEEECCTTSCCSEEEEESSCCCTTSCCCCCSSCCSSEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHH
T ss_pred EEEEEEECCCCCCcEEEEeccCCCCcccccccccCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHH
Confidence 445555555689999998765421 25899999999999999999999999999999999988888877
Q ss_pred HhCCCCeEEEEEEC
Q psy5188 96 IIGSGNTLTLQILR 109 (109)
Q Consensus 96 ~~~~~~~v~l~v~r 109 (109)
++..+..+.+++.|
T Consensus 89 l~~~~~~v~l~v~~ 102 (109)
T 1q3o_A 89 IRQGGNTLMVKVVM 102 (109)
T ss_dssp HHHTTTEEEEEEEE
T ss_pred HHhCCCEEEEEEEE
Confidence 77677888887754
No 50
>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.57 E-value=4.4e-14 Score=81.41 Aligned_cols=82 Identities=24% Similarity=0.368 Sum_probs=68.7
Q ss_pred EEEEEEecCC-CCccEEEecccCC------CCCeEEEEECCCChhhhCC-CCCCCEEEEECCEeCCCCCHHHHHHHHhCC
Q psy5188 28 EELKLKKLEC-EAWGFRLTGGRDF------GTPLTVLRVTGTSVAEEGG-MEVGDMIVSINGQCTQAMTHVEAQQHIIGS 99 (109)
Q Consensus 28 ~~~~~~~~~~-~~~G~~~~~~~~~------~~~~~V~~v~~~~~a~~~G-l~~gD~I~~vng~~v~~~~~~~~~~~~~~~ 99 (109)
+.+++.+... .+|||++.++.+. ..+++|..|.+++||+++| |++||.|++|||.++.++++.+....++..
T Consensus 7 ~~~~v~l~~~~~glG~~l~~g~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~l~~~ 86 (105)
T 1wha_A 7 GRHVACLARSERGLGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGDRVLSINGVDVTEARHDHAVSLLTAA 86 (105)
T ss_dssp EEEEEEECCCTTCCSCEEECCTTSCCSSTTCCSCEEEECCTTSSHHHHSSCCTTCEEEEESSCBCTTCCHHHHHHHHTSC
T ss_pred eeEEEEEEeCCCccCEEEEeccCCCcccCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence 4455555554 7899999987652 3479999999999999999 999999999999999998888888888877
Q ss_pred CCeEEEEEEC
Q psy5188 100 GNTLTLQILR 109 (109)
Q Consensus 100 ~~~v~l~v~r 109 (109)
+..+.+++.|
T Consensus 87 g~~v~l~v~R 96 (105)
T 1wha_A 87 SPTIALLLER 96 (105)
T ss_dssp CSCEEEEEEE
T ss_pred CCeEEEEEEE
Confidence 8888888875
No 51
>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain, structural genomics, structural genom consortium, SGC, phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1
Probab=99.57 E-value=9.3e-14 Score=81.63 Aligned_cols=81 Identities=25% Similarity=0.407 Sum_probs=67.6
Q ss_pred EEEEEEecCCCCccEEEecccCC-----CCCeEEEEECCCChhhhCC-CCCCCEEEEECCEeCCCCCHHHHHHHHhCCCC
Q psy5188 28 EELKLKKLECEAWGFRLTGGRDF-----GTPLTVLRVTGTSVAEEGG-MEVGDMIVSINGQCTQAMTHVEAQQHIIGSGN 101 (109)
Q Consensus 28 ~~~~~~~~~~~~~G~~~~~~~~~-----~~~~~V~~v~~~~~a~~~G-l~~gD~I~~vng~~v~~~~~~~~~~~~~~~~~ 101 (109)
..+.+.+. ..++||++.++.+. ..++.|..|.+++||+++| |++||+|++|||.++.++++.+....++..+.
T Consensus 26 ~~v~l~k~-~~glG~~i~gg~~~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~g~ 104 (117)
T 2byg_A 26 VEIKLFKG-PKGLGFSIAGGVGNQHIPGDNSIYVTKIIDGGAAQKDGRLQVGDRLLMVNNYSLEEVTHEEAVAILKNTSE 104 (117)
T ss_dssp EEEEEECB-TTBSSEEEEECTTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTCCS
T ss_pred EEEEEEeC-CCCcCEEEEcccCCCCccCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCC
Confidence 34444433 38999999977542 2479999999999999999 99999999999999999889888888887788
Q ss_pred eEEEEEEC
Q psy5188 102 TLTLQILR 109 (109)
Q Consensus 102 ~v~l~v~r 109 (109)
.+.++|.|
T Consensus 105 ~v~l~v~R 112 (117)
T 2byg_A 105 VVYLKVGK 112 (117)
T ss_dssp EEEEEEEE
T ss_pred eEEEEEEe
Confidence 99998875
No 52
>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=99.57 E-value=5.7e-14 Score=82.39 Aligned_cols=82 Identities=21% Similarity=0.317 Sum_probs=68.9
Q ss_pred EEEEEEecCCCCccEEEecccCC---------CCCeEEEEECCCChhhhCC-CCCCCEEEEECCEeCCCCCHHHHHHHHh
Q psy5188 28 EELKLKKLECEAWGFRLTGGRDF---------GTPLTVLRVTGTSVAEEGG-MEVGDMIVSINGQCTQAMTHVEAQQHII 97 (109)
Q Consensus 28 ~~~~~~~~~~~~~G~~~~~~~~~---------~~~~~V~~v~~~~~a~~~G-l~~gD~I~~vng~~v~~~~~~~~~~~~~ 97 (109)
..+.+.+....+|||++.++.+. ..+++|..|.+++||+++| |++||+|++|||.++.+.++.+....++
T Consensus 17 ~~v~l~k~~~~~lG~~i~gg~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~~~ 96 (117)
T 2ehr_A 17 RIVEIFREPNVSLGISIVGGQTVIKRLKNGEELKGIFIKQVLEDSPAGKTNALKTGDKILEVSGVDLQNASHSEAVEAIK 96 (117)
T ss_dssp EEEEECCCSSSCCCEEECCCCSCCCSSCCCSCCCSEEEEEECSSSTTTSSCSCCTTCEEEEESSCBCTTCCHHHHHHHHH
T ss_pred EEEEEEeCCCCccCEEEeCCcccccccccCCCcCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence 44555554458999999887643 2479999999999999999 9999999999999999998888888888
Q ss_pred CCCCeEEEEEEC
Q psy5188 98 GSGNTLTLQILR 109 (109)
Q Consensus 98 ~~~~~v~l~v~r 109 (109)
..+..+.+++.|
T Consensus 97 ~~g~~v~l~v~r 108 (117)
T 2ehr_A 97 NAGNPVVFIVQS 108 (117)
T ss_dssp TSCSSEEEEECC
T ss_pred cCCCeEEEEEEE
Confidence 878888888865
No 53
>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A
Probab=99.57 E-value=2.2e-13 Score=76.48 Aligned_cols=78 Identities=27% Similarity=0.333 Sum_probs=63.1
Q ss_pred EEEEEEecCCCCccEEEecccCCCCCeEEEEECCCChhhhCCCCCCCEEEEECCEeCCCCCHHHHHHHHhCCCCeEEEEE
Q psy5188 28 EELKLKKLECEAWGFRLTGGRDFGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQI 107 (109)
Q Consensus 28 ~~~~~~~~~~~~~G~~~~~~~~~~~~~~V~~v~~~~~a~~~Gl~~gD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v 107 (109)
+.+++.+. ..+|||++.++.+. .++.|..|.+++||+.+||++||.|++|||.++.++++.+....++..++.+.+.+
T Consensus 5 r~v~l~r~-~~g~G~~~~~~~~~-~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~~~~~~ 82 (91)
T 1g9o_A 5 RLCCLEKG-PNGYGFHLHGEKGK-LGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLV 82 (91)
T ss_dssp EEEEEECB-TTBCCEEEEECTTC-SSEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHTCSSEEEEEE
T ss_pred EEEEEEeC-CCcccEEEEecCCC-CCEEEEEECCCCHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCcEEEEE
Confidence 44555543 36899999876543 47999999999999999999999999999999999888888888887656555544
No 54
>2edp_A Fragment, shroom family member 4; APX/shroom family member, KIAA1202 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=7.4e-15 Score=84.06 Aligned_cols=81 Identities=32% Similarity=0.427 Sum_probs=67.4
Q ss_pred EEEEEEecCCCCccEEEecccCCCCCeEEEEECCCChhhhC-CCCCCCEEEEECCEeCCCCCHHHHHHHHhCCCCeEEEE
Q psy5188 28 EELKLKKLECEAWGFRLTGGRDFGTPLTVLRVTGTSVAEEG-GMEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQ 106 (109)
Q Consensus 28 ~~~~~~~~~~~~~G~~~~~~~~~~~~~~V~~v~~~~~a~~~-Gl~~gD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~ 106 (109)
+.+.+.+.+..+|||++.++.+...++.|..|.+++||+++ ||++||+|++|||.++.++ +.+....++..+..+.++
T Consensus 11 ~~~~v~~~~~~~~G~~~~gg~~~~~~v~V~~V~~~spA~~agGL~~GD~I~~ing~~v~~~-~~~~~~~~~~~~~~v~l~ 89 (100)
T 2edp_A 11 QYVPVQLQGGAPWGFTLKGGLEHCEPLTVSKIEDGGKAALSQKMRTGDELVNINGTPLYGS-RQEALILIKGSFRILKLI 89 (100)
T ss_dssp EEEEEECCSCSCCCCCEEEEGGGTEEEEECCCCTTSHHHHHTSCCTTCEEEEETTEECCSC-SHHHHHHHHTCCSSCEEE
T ss_pred EEEEEEECCCCCcCEEEeccCCCCCCeEEEEECCCCHHHHcCCCCCCCEEEEECCEEccch-HHHHHHHHHhCCCeEEEE
Confidence 56777777778999999887665556889999999999999 8999999999999999986 556666677667888888
Q ss_pred EEC
Q psy5188 107 ILR 109 (109)
Q Consensus 107 v~r 109 (109)
+.|
T Consensus 90 v~R 92 (100)
T 2edp_A 90 VRR 92 (100)
T ss_dssp EEE
T ss_pred EEe
Confidence 875
No 55
>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high affinity ligand, cell adhesio; 1.60A {Homo sapiens} PDB: 2h2c_A 2h3m_A 2rrm_A
Probab=99.56 E-value=1.5e-13 Score=79.34 Aligned_cols=80 Identities=26% Similarity=0.410 Sum_probs=65.1
Q ss_pred EEEEEecCCCCccEEEecccCC------CCCeEEEEECCCChhhhCCCCCCCEEEEECCEeCCCCCHHHHHHHHhCCCCe
Q psy5188 29 ELKLKKLECEAWGFRLTGGRDF------GTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNT 102 (109)
Q Consensus 29 ~~~~~~~~~~~~G~~~~~~~~~------~~~~~V~~v~~~~~a~~~Gl~~gD~I~~vng~~v~~~~~~~~~~~~~~~~~~ 102 (109)
.+.+.+....++||++.++.+. ..++.|..+.+++||+ +||++||.|++|||.++.++.+..........+..
T Consensus 10 ~v~l~k~~~~glG~~i~~~~~~~~~~~~~~gv~V~~V~~~spA~-agl~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~ 88 (107)
T 2h2b_A 10 TVTLHRAPGFGFGIAISGGRDNPHFQSGETSIVISDVLKGGPAE-GQLQENDRVAMVNGVSMDNVEHAFAVQQLRKSGKN 88 (107)
T ss_dssp EEEEECBTTTBTCEEEEECTTSCCTTTCCCCEEEEEECTTSTTB-TTBCTTCEEEEETTEECTTCCHHHHHHHHHTCCSE
T ss_pred EEEEEeCCCCccCEEEecCcCCCcccCCCCCEEEEEECCCCchh-hCCCCCCEEEEECCEECCCccHHHHHHHhhCCCCE
Confidence 3444444447999999876652 3478999999999999 99999999999999999999888776666667888
Q ss_pred EEEEEEC
Q psy5188 103 LTLQILR 109 (109)
Q Consensus 103 v~l~v~r 109 (109)
+.+++.|
T Consensus 89 v~l~v~R 95 (107)
T 2h2b_A 89 AKITIRR 95 (107)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 8888865
No 56
>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane, HOST- interaction, structural genomics consortium, synaptosome, T junction; 1.80A {Homo sapiens}
Probab=99.56 E-value=6.7e-14 Score=82.94 Aligned_cols=98 Identities=20% Similarity=0.326 Sum_probs=68.8
Q ss_pred eeeeeeeeecccceeeEEEEEEecCCCCccEEEecccCC---------CCCeEEEEECCCChhhhCC-CCCCCEEEEECC
Q psy5188 12 QFDILIQLILTKEVMCEELKLKKLECEAWGFRLTGGRDF---------GTPLTVLRVTGTSVAEEGG-MEVGDMIVSING 81 (109)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~---------~~~~~V~~v~~~~~a~~~G-l~~gD~I~~vng 81 (109)
.++....-.+..+..+.++.+.+....++||++.++... ..++.|..|.+++||+++| |++||+|++|||
T Consensus 10 ~~~~~~~d~~s~~~~p~~v~l~k~~~~~lGi~v~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng 89 (123)
T 2iwq_A 10 GVDLGTENLYFQSMQPRRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDG 89 (123)
T ss_dssp -------------CCCEEEEECCCTTSCCSEEEEECC---------CCCCSEEEEEECSSSHHHHHCCCCTTCEEEEETT
T ss_pred ccccccccCCcccCCCEEEEEEecCCCCccEEEEeccCccccccccCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECC
Confidence 344444444555555566676655557899998764321 2468999999999999999 999999999999
Q ss_pred EeCCCCCHHHHHHHHhCCCCeEEEEEEC
Q psy5188 82 QCTQAMTHVEAQQHIIGSGNTLTLQILR 109 (109)
Q Consensus 82 ~~v~~~~~~~~~~~~~~~~~~v~l~v~r 109 (109)
.++.++++.+....++..+..+.+++.|
T Consensus 90 ~~v~~~~~~~~~~~l~~~~~~v~l~v~r 117 (123)
T 2iwq_A 90 MDLRDASHEQAVEAIRKAGNPVVFMVQS 117 (123)
T ss_dssp EECTTCCHHHHHHHHHHCCSSEEEEEEC
T ss_pred EECCCCCHHHHHHHHHcCCCeEEEEEEE
Confidence 9999888888888887766788888876
No 57
>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane protein 25, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=1.2e-13 Score=81.40 Aligned_cols=81 Identities=28% Similarity=0.484 Sum_probs=66.9
Q ss_pred EEEEEEecCCCCccEEEecccCC-----CCCeEEEEECCCChhhhCC-CCCCCEEEEECCEeCCCCCHHHHHHHHhCCCC
Q psy5188 28 EELKLKKLECEAWGFRLTGGRDF-----GTPLTVLRVTGTSVAEEGG-MEVGDMIVSINGQCTQAMTHVEAQQHIIGSGN 101 (109)
Q Consensus 28 ~~~~~~~~~~~~~G~~~~~~~~~-----~~~~~V~~v~~~~~a~~~G-l~~gD~I~~vng~~v~~~~~~~~~~~~~~~~~ 101 (109)
+.+.+.+. ..+|||++.++.+. ..+++|..|.+++||+++| |++||+|++|||.++.++.+.+....++..+.
T Consensus 19 ~~v~l~r~-~~~lG~~i~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~~~~~g~ 97 (120)
T 2eno_A 19 EEINLTRG-PSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRNAGY 97 (120)
T ss_dssp EEEEEECC-SSSCSEEEECCTTTCSSSSCCSEEEEEECSSSHHHHSCCSCTTCEEEEETTEECCSCCHHHHHHHHHHHCS
T ss_pred EEEEEEEC-CCCCCEEEecccCCccccCCCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCC
Confidence 33444432 28999999987653 4579999999999999999 99999999999999999988887777776678
Q ss_pred eEEEEEEC
Q psy5188 102 TLTLQILR 109 (109)
Q Consensus 102 ~v~l~v~r 109 (109)
.+.++|.|
T Consensus 98 ~v~l~v~R 105 (120)
T 2eno_A 98 AVSLRVQH 105 (120)
T ss_dssp EEEEEEEE
T ss_pred eEEEEEEe
Confidence 88888865
No 58
>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.56 E-value=5.7e-14 Score=82.47 Aligned_cols=72 Identities=19% Similarity=0.265 Sum_probs=63.6
Q ss_pred CCccEEEecccCC-----CCCeEEEEECCCChhhhCC-CCCCCEEEEECCEeCCCCCHHHHHHHHhCCCCeEEEEEEC
Q psy5188 38 EAWGFRLTGGRDF-----GTPLTVLRVTGTSVAEEGG-MEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQILR 109 (109)
Q Consensus 38 ~~~G~~~~~~~~~-----~~~~~V~~v~~~~~a~~~G-l~~gD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~r 109 (109)
.+|||++.++.+. ..+++|..+.+++||+++| |++||.|++|||.++.++++.++...++..+..+.++|.|
T Consensus 30 ~glG~~i~g~~~~~~~~~~~g~~V~~v~~~s~A~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~l~~~~~~v~l~v~R 107 (117)
T 1ujd_A 30 NGLGIRIVGGKEIPGHSGEIGAYIAKILPGGSAEQTGKLMEGMQVLEWNGIPLTSKTYEEVQSIISQQSGEAEICVRL 107 (117)
T ss_dssp CSCSEEEEEEEECSSSSSCEEEEEEEECTTCHHHHHSSCCTTCEEEEETTEECTTCCHHHHHHHHSCCSSCEEEEEES
T ss_pred CcccEEEeCCCCCCcccCCcCEEEEEECCCCHHHHcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCEEEEEEEE
Confidence 6899999877643 2268899999999999999 9999999999999999999998888888888889999876
No 59
>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane protein; NMR {Homo sapiens} PDB: 2ev8_A
Probab=99.56 E-value=6.8e-14 Score=79.74 Aligned_cols=82 Identities=22% Similarity=0.342 Sum_probs=67.5
Q ss_pred eeEEEEEEecCCCCccEEEecccCCCCCeEEEEECCCChhhhCC-CCCCCEEEEECCEeCCCCCHHHHHHHHhCCCCeEE
Q psy5188 26 MCEELKLKKLECEAWGFRLTGGRDFGTPLTVLRVTGTSVAEEGG-MEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLT 104 (109)
Q Consensus 26 ~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~V~~v~~~~~a~~~G-l~~gD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~ 104 (109)
+++.+.+.+....++|+++....+ .++.|..+.+++||+++| |++||.|++|||.++.++++.+....++..+..+.
T Consensus 12 ~~~~v~l~K~~~~~lG~~l~~~~~--~gv~V~~V~~gspA~~aG~L~~GD~Il~ING~~v~~~~~~~~~~~l~~~~~~v~ 89 (97)
T 2ejy_A 12 MVRLIQFEKVTEEPMGICLKLNEK--QSCTVARILHGGMIHRQGSLHVGDEILEINGTNVTNHSVDQLQKAMKETKGMIS 89 (97)
T ss_dssp -CEEEEEEECSSSCCSEEEEECTT--CCEEEEEECSSSHHHHHTCCCTTCEEEEETTBCCCSSCSHHHHHHHHHCCEEEE
T ss_pred ccEEEEEEeCCCCCeeEEEEeCCC--CCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEE
Confidence 346677777777899999875432 478999999999999999 99999999999999998777787778876677888
Q ss_pred EEEEC
Q psy5188 105 LQILR 109 (109)
Q Consensus 105 l~v~r 109 (109)
+++.+
T Consensus 90 L~V~~ 94 (97)
T 2ejy_A 90 LKVIP 94 (97)
T ss_dssp EEEEC
T ss_pred EEEEE
Confidence 88753
No 60
>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics consortium, SGC, protein BIN; 1.30A {Homo sapiens} SCOP: b.36.1.0
Probab=99.55 E-value=1.8e-13 Score=77.15 Aligned_cols=80 Identities=23% Similarity=0.316 Sum_probs=67.0
Q ss_pred EEEEEEecCCCCccEEEecccCCCCCeEEEEECCCChhhhCC-CCCCCEEEEECCEeCCCCCHHHHHHHHhCCCCeEEEE
Q psy5188 28 EELKLKKLECEAWGFRLTGGRDFGTPLTVLRVTGTSVAEEGG-MEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQ 106 (109)
Q Consensus 28 ~~~~~~~~~~~~~G~~~~~~~~~~~~~~V~~v~~~~~a~~~G-l~~gD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~ 106 (109)
+.+.+.+. ..++||++.++ +...+++|..+.+++||+++| |++||+|++|||.++.+.++.+....++..+..+.++
T Consensus 6 r~v~l~k~-~~~lG~~i~~~-~~~~~~~V~~v~~gspA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~ 83 (93)
T 3o46_A 6 KIIRLVKN-REPLGATIKKD-EQTGAIIVARIMRGGAADRSGLIHVGDELREVNGIPVEDKRPEEIIQILAQSQGAITFK 83 (93)
T ss_dssp EEEEEEES-SSCCCEEEEEC-TTTCCEEEEEECTTSHHHHHTCCCTTCEEEEETTEESTTSCHHHHHHHHHHCCEEEEEE
T ss_pred EEEEEEeC-CCCccEEEEec-CCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEE
Confidence 45666664 36999999865 233478999999999999999 9999999999999999889999888888776788888
Q ss_pred EEC
Q psy5188 107 ILR 109 (109)
Q Consensus 107 v~r 109 (109)
+.|
T Consensus 84 v~~ 86 (93)
T 3o46_A 84 IIP 86 (93)
T ss_dssp EEC
T ss_pred EEe
Confidence 764
No 61
>3qe1_A Sorting nexin-27, G protein-activated inward RECT potassium channel 3 chimera; PDZ domain, PDZ binding, GIRK3 regulation, early endosomes; 1.68A {Rattus norvegicus} SCOP: b.36.1.0 PDB: 3qdo_A 3qgl_A
Probab=99.55 E-value=2e-13 Score=78.83 Aligned_cols=81 Identities=26% Similarity=0.394 Sum_probs=65.9
Q ss_pred EEEEEEecCCCCccEEEecccCCC------------CCeEEEEECCCChhhhCCCCCCCEEEEECCEeCCCCCHHHHHHH
Q psy5188 28 EELKLKKLECEAWGFRLTGGRDFG------------TPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQH 95 (109)
Q Consensus 28 ~~~~~~~~~~~~~G~~~~~~~~~~------------~~~~V~~v~~~~~a~~~Gl~~gD~I~~vng~~v~~~~~~~~~~~ 95 (109)
+.+.+.+.. .+|||++.++.+.. +.++|..+.+++||+++||++||.|++|||.++.++++.+....
T Consensus 8 r~v~l~k~~-~g~G~~l~~~~~~~~~~~~~~~~~~~p~~~V~~v~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~ 86 (107)
T 3qe1_A 8 RVVRIVKSE-SGYGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLPGGAADRAGVRKGDRILEVNGVNVEGATHKQVVDL 86 (107)
T ss_dssp EEEEEECBT-TBTCEEEECCSSSCCCCEESSSSEESCCEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHH
T ss_pred EEEEEEECC-CCCCEEEEcccccCCcceeccccccCCceEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHH
Confidence 445555433 58999998774322 22359999999999999999999999999999999888888888
Q ss_pred HhCCCCeEEEEEEC
Q psy5188 96 IIGSGNTLTLQILR 109 (109)
Q Consensus 96 ~~~~~~~v~l~v~r 109 (109)
++..+..+.+++.|
T Consensus 87 l~~~g~~v~l~v~r 100 (107)
T 3qe1_A 87 IRAGEKELILTVLS 100 (107)
T ss_dssp HHHCSSEEEEEEEC
T ss_pred HHcCCCEEEEEEEc
Confidence 88778899999876
No 62
>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=8.2e-14 Score=79.61 Aligned_cols=81 Identities=27% Similarity=0.436 Sum_probs=65.7
Q ss_pred EEEEEEecCCCCccEEEecccCCCCCeEEEEECCCChhhhCCCCCCCEEEEECCEeCCCCCHHHHHHHHhCCCCeEEEEE
Q psy5188 28 EELKLKKLECEAWGFRLTGGRDFGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQI 107 (109)
Q Consensus 28 ~~~~~~~~~~~~~G~~~~~~~~~~~~~~V~~v~~~~~a~~~Gl~~gD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v 107 (109)
..+++.+.....|||.+....+...++.|..|.+++||+.+||++||.|++|||.++.++.+.++...++. +..+.+++
T Consensus 12 ~~v~l~~~~~~~lG~~~~~~~~~~~gv~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~~~~-~~~v~l~v 90 (100)
T 2eeh_A 12 HSVRVEKSPAGRLGFSVRGGSEHGLGIFVSKVEEGSSAERAGLCVGDKITEVNGLSLESTTMGSAVKVLTS-SSRLHMMV 90 (100)
T ss_dssp CCEEECCCSSSSCSEEEECCTTTTCCEEEEEECTTSHHHHHTCCSSCEEEEETTEECSSCCHHHHHHHHHS-CSSEEEEE
T ss_pred EEEEEEECCCCCccEEEEccccCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHhhcC-CCEEEEEE
Confidence 33455444446799999887655568999999999999999999999999999999999887776666666 68888888
Q ss_pred EC
Q psy5188 108 LR 109 (109)
Q Consensus 108 ~r 109 (109)
.|
T Consensus 91 ~R 92 (100)
T 2eeh_A 91 RR 92 (100)
T ss_dssp EE
T ss_pred EE
Confidence 75
No 63
>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm, phosphoprotein, transport protein, CAsp; 2.60A {Homo sapiens} PDB: 2eej_A
Probab=99.55 E-value=5.1e-14 Score=79.14 Aligned_cols=80 Identities=25% Similarity=0.323 Sum_probs=64.2
Q ss_pred EEEEEEecCCCCccEEEecccCCCCCeEEEEECCCChhhhCCCCCCCEEEEECCEeCCCCCHHHHHHHHhCCCCeEEEEE
Q psy5188 28 EELKLKKLECEAWGFRLTGGRDFGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQI 107 (109)
Q Consensus 28 ~~~~~~~~~~~~~G~~~~~~~~~~~~~~V~~v~~~~~a~~~Gl~~gD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v 107 (109)
+.+.+.+.. .++||++.+.... .++.|..|.+++||+++||++||.|++|||.++.++++.+....++..+..+.+++
T Consensus 5 r~v~l~k~~-~~~G~~l~~~~~~-~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v 82 (91)
T 2vsp_A 5 KLCRLAKGE-NGYGFHLNAIRGL-PGSFIKEVQKGGPADLAGLEDEDVIIEVNGVNVLDEPYEKVVDRIQSSGKNVTLLV 82 (91)
T ss_dssp EEEEEECBT-TBTSCCCBCCTTC-SCCBC-CCCTTSHHHHTTCCTTCEEEEETTEECTTSCHHHHHHHHTTSCSEEEEEE
T ss_pred EEEEEEeCC-CcccEEEEeccCC-CCeEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEEEE
Confidence 445555433 5899998765432 36789999999999999999999999999999998888888888877688999988
Q ss_pred EC
Q psy5188 108 LR 109 (109)
Q Consensus 108 ~r 109 (109)
.|
T Consensus 83 ~r 84 (91)
T 2vsp_A 83 CG 84 (91)
T ss_dssp EC
T ss_pred Ee
Confidence 76
No 64
>3i4w_A Disks large homolog 4; alpha and beta protein, alternative splicing, cell junction, cell membrane, lipoprotein, membrane, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.36.1.1 PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A
Probab=99.55 E-value=1.5e-13 Score=78.84 Aligned_cols=80 Identities=21% Similarity=0.345 Sum_probs=66.3
Q ss_pred EEEEEEecCCCCccEEEecccCCCCCeEEEEECCCChhhhCC-CCCCCEEEEECCEeCCCCCHHHHHHHHhCCCCeEEEE
Q psy5188 28 EELKLKKLECEAWGFRLTGGRDFGTPLTVLRVTGTSVAEEGG-MEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQ 106 (109)
Q Consensus 28 ~~~~~~~~~~~~~G~~~~~~~~~~~~~~V~~v~~~~~a~~~G-l~~gD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~ 106 (109)
..+.+.+. ..+|||++.++.+. .+++|..|.+++||+++| |++||.|++|||.++.++++.+....++..+..+.++
T Consensus 13 ~~v~l~k~-~~glG~~~~~~~~~-~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~ 90 (104)
T 3i4w_A 13 RRIVIHRG-STGLGFNIVGGEXG-EGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTII 90 (104)
T ss_dssp EEEEEECB-TTBTSEEEEECC-C-CCEEEEEECTTSHHHHHCCCCTTEEEEEETTEECTTCCHHHHHHHHHTSCSEEEEE
T ss_pred EEEEEEeC-CCccCEEEECCCCC-CCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEE
Confidence 44555443 47899999877543 379999999999999999 9999999999999999988888887787788888888
Q ss_pred EEC
Q psy5188 107 ILR 109 (109)
Q Consensus 107 v~r 109 (109)
+.|
T Consensus 91 v~r 93 (104)
T 3i4w_A 91 AQY 93 (104)
T ss_dssp EEE
T ss_pred EEE
Confidence 864
No 65
>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=5.5e-14 Score=80.82 Aligned_cols=79 Identities=38% Similarity=0.630 Sum_probs=65.2
Q ss_pred EEEecCC-CCccEEEecccCC--CCCeEEEEECCCChhhhCC-CCCCCEEEEECCEeCCCCCHHHHHHHHhCCCCeEEEE
Q psy5188 31 KLKKLEC-EAWGFRLTGGRDF--GTPLTVLRVTGTSVAEEGG-MEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQ 106 (109)
Q Consensus 31 ~~~~~~~-~~~G~~~~~~~~~--~~~~~V~~v~~~~~a~~~G-l~~gD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~ 106 (109)
.+.+.+. .+|||.+.++.+. ..++.|..|.+++||+++| |++||+|++|||.++.++++.+....++..+..+.++
T Consensus 14 ~v~l~~~~~g~G~~l~~~~~~~~~~~v~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~l~ 93 (104)
T 2djt_A 14 SVELVRGYAGFGLTLGGGRDVAGDTPLAVRGLLKDGPAQRCGRLEVGDLVLHINGESTQGLTHAQAVERIRAGGPQLHLV 93 (104)
T ss_dssp EEEEECCSSSCCEEEECCEETTEECCCEEEEECTTCHHHHHCSCCTTCBEEEETTEECTTCCHHHHHHHHHHTCSEEEEE
T ss_pred EEEEEeCCCCccEEEEeccCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEE
Confidence 3433333 7999999886543 3478999999999999999 9999999999999999988887777777677889998
Q ss_pred EEC
Q psy5188 107 ILR 109 (109)
Q Consensus 107 v~r 109 (109)
+.|
T Consensus 94 v~R 96 (104)
T 2djt_A 94 IRR 96 (104)
T ss_dssp ECC
T ss_pred EEE
Confidence 876
No 66
>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1
Probab=99.55 E-value=1.6e-13 Score=76.78 Aligned_cols=80 Identities=23% Similarity=0.271 Sum_probs=66.3
Q ss_pred EEEEEEecCCCCccEEEecccCCCCCeEEEEECCCChhhh-CCCCCCCEEEEECCEeCCCCCHHHHHHHHhCCCCeEEEE
Q psy5188 28 EELKLKKLECEAWGFRLTGGRDFGTPLTVLRVTGTSVAEE-GGMEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQ 106 (109)
Q Consensus 28 ~~~~~~~~~~~~~G~~~~~~~~~~~~~~V~~v~~~~~a~~-~Gl~~gD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~ 106 (109)
+.+.+.+....++|+++....+ .++.|..+.+++||++ +||++||.|++|||.++.++++.+....++.....+.++
T Consensus 3 r~V~l~K~~~~~lG~~i~~~~~--~~~~I~~V~~gspA~~~agL~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~~~v~l~ 80 (88)
T 1kwa_A 3 RLVQFQKNTDEPMGITLKMNEL--NHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFK 80 (88)
T ss_dssp EEEEEEECSSSCCCEEEECSCG--GGEEEEEECTTSHHHHHTCCCTTCEEEEETTEEGGGSCHHHHHHHHHHCCEEEEEE
T ss_pred EEEEEEeCCCCceeEEEEeCCC--CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCcEEEE
Confidence 4566766656899999986422 3689999999999999 789999999999999999888998888887764588888
Q ss_pred EEC
Q psy5188 107 ILR 109 (109)
Q Consensus 107 v~r 109 (109)
+.|
T Consensus 81 v~r 83 (88)
T 1kwa_A 81 IVP 83 (88)
T ss_dssp EEC
T ss_pred EEC
Confidence 765
No 67
>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural genomics, structura genomics consortium, SGC, signaling protein; 1.12A {Homo sapiens} PDB: 2pku_A
Probab=99.54 E-value=2.2e-13 Score=79.69 Aligned_cols=82 Identities=23% Similarity=0.363 Sum_probs=66.4
Q ss_pred EEEEEEecCCCCccEEEecccCCCCCeEEEEECCCChhhhCC-CCCCCEEEEECCEeCCCCCHHHHHHHHhCCCCeEEEE
Q psy5188 28 EELKLKKLECEAWGFRLTGGRDFGTPLTVLRVTGTSVAEEGG-MEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQ 106 (109)
Q Consensus 28 ~~~~~~~~~~~~~G~~~~~~~~~~~~~~V~~v~~~~~a~~~G-l~~gD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~ 106 (109)
+.+.+.+....++||++.++.+...++.|..+.+++||+++| |++||+|++|||.++.+.++.+....++..+..+.++
T Consensus 26 ~~V~l~~~~~~~lG~~l~~~~~~~~~~~V~~V~~gspA~~aG~L~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~~~v~l~ 105 (114)
T 2gzv_A 26 GKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 105 (114)
T ss_dssp EEEEEECCTTSCCSEEEEECCC--CCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCSEEEEE
T ss_pred EEEEEEECCCCcEeEEEEeCCCCCCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEE
Confidence 556666655577999998776655579999999999999999 9999999999999997777888777777666678887
Q ss_pred EEC
Q psy5188 107 ILR 109 (109)
Q Consensus 107 v~r 109 (109)
+.+
T Consensus 106 v~~ 108 (114)
T 2gzv_A 106 YNK 108 (114)
T ss_dssp EEC
T ss_pred EEe
Confidence 753
No 68
>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3, human, structural genomics, structural GE consortium, SGC, signaling protein; 2.39A {Homo sapiens} SCOP: b.36.1.1
Probab=99.54 E-value=2e-13 Score=76.74 Aligned_cols=77 Identities=19% Similarity=0.367 Sum_probs=62.9
Q ss_pred EEEEEEecCCCCccEEEecccCCCCCeEEEEECCCChhhhCCCCCCCEEEEECCEeCCCCCHHHHHHHHhCCCCeEEEEE
Q psy5188 28 EELKLKKLECEAWGFRLTGGRDFGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQI 107 (109)
Q Consensus 28 ~~~~~~~~~~~~~G~~~~~~~~~~~~~~V~~v~~~~~a~~~Gl~~gD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v 107 (109)
+.+++.+ +..++||.+.+. .++.|..|.+++||+++||++||.|+++||.++.++++.+....++..+..+.+++
T Consensus 5 r~v~l~~-~~~g~G~~l~~~----~~~~V~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~~v~l~v 79 (91)
T 2f5y_A 5 RQITIPR-GKDGFGFTICCD----SPVRVQAVDSGGPAERAGLQQLDTVLQLNERPVEHWKCVELAHEIRSCPSEIILLV 79 (91)
T ss_dssp EEEEEEC-BTTBTSEEEECS----SSCEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHTCSSEEEEEE
T ss_pred EEEEEEe-CCCCccEEEecC----CCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEE
Confidence 3444443 337899998754 25899999999999999999999999999999999888887777777777888887
Q ss_pred EC
Q psy5188 108 LR 109 (109)
Q Consensus 108 ~r 109 (109)
.|
T Consensus 80 ~R 81 (91)
T 2f5y_A 80 WR 81 (91)
T ss_dssp EE
T ss_pred Ee
Confidence 65
No 69
>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor, PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2
Probab=99.54 E-value=6.6e-14 Score=83.65 Aligned_cols=73 Identities=30% Similarity=0.472 Sum_probs=64.0
Q ss_pred CCCccEEEecccC---CCCCeEEEEECCCChhhhC-CCCCCCEEEEECCEeCCCCCHHHHHHHHhCC-CCeEEEEEEC
Q psy5188 37 CEAWGFRLTGGRD---FGTPLTVLRVTGTSVAEEG-GMEVGDMIVSINGQCTQAMTHVEAQQHIIGS-GNTLTLQILR 109 (109)
Q Consensus 37 ~~~~G~~~~~~~~---~~~~~~V~~v~~~~~a~~~-Gl~~gD~I~~vng~~v~~~~~~~~~~~~~~~-~~~v~l~v~r 109 (109)
..+|||++.++.+ ...+++|..|.+++||+++ ||++||+|++|||.++.++++.++...++.. +..+.+++.|
T Consensus 39 ~~glG~~i~gg~~~~~~~~~i~I~~V~~gs~A~~aggL~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~~v~l~v~r 116 (130)
T 1i16_A 39 SAGLGFSLEGGKGSLHGDKPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKALPDGPVTIVIRR 116 (130)
T ss_dssp SSSTTEEEECCCCCSSSCCCCEEEEECSSCCCSSSCCCCTTCCEEECSSCBGGGSCHHHHHHHHHTSCSSEEEEEEEE
T ss_pred CCccCEEEecCcCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCceEEEEEEe
Confidence 4899999998876 3457999999999999999 7999999999999999999999999888876 5568888865
No 70
>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.54 E-value=1.7e-13 Score=80.00 Aligned_cols=82 Identities=27% Similarity=0.467 Sum_probs=67.5
Q ss_pred EEEEEEecCCCCccEEEecccCC-------CCCeEEEEECCCChhhh-CCCCCCCEEEEECCEeCCCCCHHHHHHHHhCC
Q psy5188 28 EELKLKKLECEAWGFRLTGGRDF-------GTPLTVLRVTGTSVAEE-GGMEVGDMIVSINGQCTQAMTHVEAQQHIIGS 99 (109)
Q Consensus 28 ~~~~~~~~~~~~~G~~~~~~~~~-------~~~~~V~~v~~~~~a~~-~Gl~~gD~I~~vng~~v~~~~~~~~~~~~~~~ 99 (109)
..+.+.+....+|||++.++.+. ..++.|..|.+++||++ +||++||+|++|||.++.++++.+....++..
T Consensus 12 ~~v~l~~~~~~~lGf~l~~~~~~~~~g~~~~~~~~V~~V~~~spA~~~agL~~GD~I~~ing~~v~~~~~~~~~~~l~~~ 91 (114)
T 1uew_A 12 SDVVIHRKENEGFGFVIISSLNRPESGSTITVPHKIGRIIDGSPADRCAKLKVGDRILAVNGQSIINMPHADIVKLIKDA 91 (114)
T ss_dssp EEEEEECCTTSCCCEEEECCCCSCCSSCCSCCSCEEEEECTTCTTGGGSSCCTTCBEEEETTBCTTTSCHHHHHHHHHHT
T ss_pred eEEEEEECCCCCCCEEEEeecccCCCCcccccCeEEEEECCCChHHHhCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence 44566655568999999875432 12568999999999999 99999999999999999998888888888777
Q ss_pred CCeEEEEEEC
Q psy5188 100 GNTLTLQILR 109 (109)
Q Consensus 100 ~~~v~l~v~r 109 (109)
+..+.+++.|
T Consensus 92 g~~v~l~v~r 101 (114)
T 1uew_A 92 GLSVTLRIIP 101 (114)
T ss_dssp TTEEEEEECC
T ss_pred CCeEEEEEEe
Confidence 8899998875
No 71
>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain, ptpase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.54 E-value=2e-14 Score=84.54 Aligned_cols=82 Identities=29% Similarity=0.363 Sum_probs=67.2
Q ss_pred EEEEEEecCCCCccEEEecccCCCCCeEEEEECCCChhhhC--CCCCCCEEEEECCEeCCCCCHHHHHHHHhCCC----C
Q psy5188 28 EELKLKKLECEAWGFRLTGGRDFGTPLTVLRVTGTSVAEEG--GMEVGDMIVSINGQCTQAMTHVEAQQHIIGSG----N 101 (109)
Q Consensus 28 ~~~~~~~~~~~~~G~~~~~~~~~~~~~~V~~v~~~~~a~~~--Gl~~gD~I~~vng~~v~~~~~~~~~~~~~~~~----~ 101 (109)
..+.+.+....+|||++.++.+...+++|..|.+++||+++ ||++||+|++|||.++.++++.++...++..+ .
T Consensus 17 ~~v~l~k~~~~~~G~~l~gg~~~~~~v~V~~V~~~spA~~a~gGL~~GD~Il~ing~~v~~~~~~~~~~~~~~~~~~~~~ 96 (119)
T 2cs5_A 17 VLIRMKPDENGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIKASCERHSG 96 (119)
T ss_dssp EEEEECCCSSSCCSEEEEEEGGGTEEEEEEEECSSSTTTSSSSCCCTTCEEEEETTBCTTSSCHHHHHHHHHHHHHCCSS
T ss_pred EEEEEEeCCCCCcCEEEecccCCCCCeEEEEECCCCHHHHhhcCCCCCCEEEEECCEECCCCCHHHHHHHHHhccccCCC
Confidence 44555544446799999988765557899999999999999 89999999999999999988888887776652 4
Q ss_pred eEEEEEEC
Q psy5188 102 TLTLQILR 109 (109)
Q Consensus 102 ~v~l~v~r 109 (109)
.+.+++.|
T Consensus 97 ~v~l~v~R 104 (119)
T 2cs5_A 97 ELMLLVRP 104 (119)
T ss_dssp CEEEEEEC
T ss_pred EEEEEEEc
Confidence 78888876
No 72
>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.54 E-value=2.2e-13 Score=79.04 Aligned_cols=80 Identities=19% Similarity=0.294 Sum_probs=66.7
Q ss_pred EEEEecC-CCCccEEEecccCC---CCCeEEEEECCCChhhhCC-CCCCCEEEEECCEeCCCCCHHHHHHHHhCCCCeEE
Q psy5188 30 LKLKKLE-CEAWGFRLTGGRDF---GTPLTVLRVTGTSVAEEGG-MEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLT 104 (109)
Q Consensus 30 ~~~~~~~-~~~~G~~~~~~~~~---~~~~~V~~v~~~~~a~~~G-l~~gD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~ 104 (109)
+++.+.. ..+|||++.++.+. ..+++|..|.+++||+++| |++||.|++|||.++.+.++.+....++..+..+.
T Consensus 10 ~~v~l~~~~~glG~~l~~g~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~ 89 (110)
T 1um1_A 10 FTVELERGPSGLGMGLIDGMHTHLGAPGLYIQTLLPGSPAAADGRLSLGDRILEVNGSSLLGLGYLRAVDLIRHGGKKMR 89 (110)
T ss_dssp EEEEEECCTTCCCEEEEETTTSTTCCSSEEEEEECTTSHHHHHSCCCTTCEEEEESSCBCSSCCHHHHHHHHHTCCSEEE
T ss_pred EEEEEEECCCccCEEEeCCcCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEE
Confidence 3444433 37999999876543 2479999999999999999 99999999999999998888888888877788999
Q ss_pred EEEEC
Q psy5188 105 LQILR 109 (109)
Q Consensus 105 l~v~r 109 (109)
+++.|
T Consensus 90 l~v~R 94 (110)
T 1um1_A 90 FLVAK 94 (110)
T ss_dssp EEEEC
T ss_pred EEEEe
Confidence 99876
No 73
>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand, cytoplasm, developmental protein, phosphoprotein, WNT signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A 3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A
Probab=99.54 E-value=3.4e-14 Score=82.38 Aligned_cols=80 Identities=14% Similarity=0.255 Sum_probs=65.3
Q ss_pred EEEEec--CCCCccEEEecccCC--CCCeEEEEECCCChhhhCC-CCCCCEEEEECCEeCCCCCHHHHHHHHhCC---CC
Q psy5188 30 LKLKKL--ECEAWGFRLTGGRDF--GTPLTVLRVTGTSVAEEGG-MEVGDMIVSINGQCTQAMTHVEAQQHIIGS---GN 101 (109)
Q Consensus 30 ~~~~~~--~~~~~G~~~~~~~~~--~~~~~V~~v~~~~~a~~~G-l~~gD~I~~vng~~v~~~~~~~~~~~~~~~---~~ 101 (109)
+++.+. ...+|||++.++.+. ..+++|..|.+++||+++| |++||+|++|||.++.++++.++...++.. +.
T Consensus 7 ~~v~l~k~~~~~lG~~i~g~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~~~ 86 (108)
T 3cbz_A 7 ITVTLNMEKYNFLGISIVGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRVLRDIVHKPG 86 (108)
T ss_dssp EEEEECHHHHCCCCEEEEEECSSTTCCEEEEEEECTTSHHHHHCCCCTTCEEEEETTEETTSCCHHHHHHHHHHHHTSSS
T ss_pred EEEEEEeCCCCccCEEEEcCcCCCCCCCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhcccCCC
Confidence 344443 348999999887543 3578999999999999999 999999999999999998899888887654 45
Q ss_pred eEEEEEEC
Q psy5188 102 TLTLQILR 109 (109)
Q Consensus 102 ~v~l~v~r 109 (109)
.+.+++.|
T Consensus 87 ~v~l~v~R 94 (108)
T 3cbz_A 87 PIVLTVAK 94 (108)
T ss_dssp CEEEEEEC
T ss_pred eEEEEEEe
Confidence 78888876
No 74
>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.54 E-value=1.5e-13 Score=80.75 Aligned_cols=82 Identities=26% Similarity=0.356 Sum_probs=68.7
Q ss_pred EEEEEEecCCCCccEEEecccCCC-CCeEEEEECCCChhhhCC-CCCCCEEEEECCEeCCCCCHHHHHHHHhCCCCeEEE
Q psy5188 28 EELKLKKLECEAWGFRLTGGRDFG-TPLTVLRVTGTSVAEEGG-MEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTL 105 (109)
Q Consensus 28 ~~~~~~~~~~~~~G~~~~~~~~~~-~~~~V~~v~~~~~a~~~G-l~~gD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l 105 (109)
..+.+.+....+|||.+.++.+.. .+++|..|.+++||+++| |++||+|++|||.++.+.++.+....++..+..+.+
T Consensus 17 ~~v~l~k~~~~~lG~~i~~~~~~~~~~~~V~~V~~~spA~~aG~l~~GD~Il~Ing~~v~~~~~~~~~~~l~~~g~~v~l 96 (117)
T 1v62_A 17 LMVEIVKTPGSALGISLTTTSLRNKSVITIDRIKPASVVDRSGALHPGDHILSIDGTSMEHCSLLEATKLLASISEKVRL 96 (117)
T ss_dssp EEEEEECCTTCCCCCEEEEECCSSSCEEEEEECCTTSHHHHHTCCCTTCBEEEETTEETTSCCHHHHHHHHHSCSSEEEE
T ss_pred EEEEEEcCCCCcccEEEEccCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEE
Confidence 445565544579999998765433 248999999999999999 999999999999999888899888888878899999
Q ss_pred EEEC
Q psy5188 106 QILR 109 (109)
Q Consensus 106 ~v~r 109 (109)
++.|
T Consensus 97 ~v~r 100 (117)
T 1v62_A 97 EILP 100 (117)
T ss_dssp EECC
T ss_pred EEEE
Confidence 8876
No 75
>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.54 E-value=2.8e-13 Score=80.59 Aligned_cols=93 Identities=25% Similarity=0.349 Sum_probs=73.0
Q ss_pred eeeeecccceeeEEEEEEecCCCCccEEEecccCCCCCeEEEEECCCChhhhCCCCCCCEEEEECCEeCCCCCHHHHHHH
Q psy5188 16 LIQLILTKEVMCEELKLKKLECEAWGFRLTGGRDFGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQH 95 (109)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~V~~v~~~~~a~~~Gl~~gD~I~~vng~~v~~~~~~~~~~~ 95 (109)
.+.+.+.+.....++++.+.....+||.+.++.+...++.|..|.+++||+.+||++||.|++|||.++.++.+.++...
T Consensus 10 ~v~l~v~R~g~~~~v~v~~~~~~~lG~~~~~~~~~~~gv~V~~V~~~spA~~aGL~~GD~I~~vng~~v~~~~~~~~~~~ 89 (128)
T 1uf1_A 10 RSTLHLLQGGDEKKVNLVLGDGRSLGLTIRGGAEYGLGIYITGVDPGSEAEGSGLKVGDQILEVNGRSFLNILHDEAVRL 89 (128)
T ss_dssp SCCSCCCCCSSEEEEEEECCSSCCCCEEEECCTTTTCCCEEEEECTTCHHHHHTCCTTCEEEEETTEECSSCCHHHHHHH
T ss_pred EEEEEEEeCCcEEEEEEEECCCCccCEEEECcccCCCCEEEEEECCCCHHHHCCCCCCCEEEEECCEECCCCCHHHHHHH
Confidence 34455555555566777765557899999886655557899999999999999999999999999999999887665555
Q ss_pred HhCCCCeEEEEEEC
Q psy5188 96 IIGSGNTLTLQILR 109 (109)
Q Consensus 96 ~~~~~~~v~l~v~r 109 (109)
++. +..+.+++.|
T Consensus 90 ~~~-~~~v~l~v~R 102 (128)
T 1uf1_A 90 LKS-SRHLILTVKD 102 (128)
T ss_dssp HTT-CSEEEEEEEC
T ss_pred Hhc-CCeEEEEEEE
Confidence 554 4688888876
No 76
>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ domain, cytoskeleton, actin binding, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.53 E-value=6.2e-15 Score=84.77 Aligned_cols=80 Identities=39% Similarity=0.600 Sum_probs=67.5
Q ss_pred EEEEecCCCCccEEEecccCCCCCeEEEEECCCChhhhCCCCCCCEEEEECCEeCCCCCHHHHHHHHhCCCCeEEEEEEC
Q psy5188 30 LKLKKLECEAWGFRLTGGRDFGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQILR 109 (109)
Q Consensus 30 ~~~~~~~~~~~G~~~~~~~~~~~~~~V~~v~~~~~a~~~Gl~~gD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~r 109 (109)
+++.+.+..+|||.+.++.+...++.|..|.+++||+++||++||.|++|||.++.++++.+....++..+..+.+++.|
T Consensus 7 ~~v~~~~~~~lG~~l~~g~~~~~~~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v~R 86 (103)
T 1v5l_A 7 GNVVLPGPAPWGFRLSGGIDFNQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCLKIDR 86 (103)
T ss_dssp BCCEEESSSCCSBCCEEETTTTEEEECSCBCTTSTTGGGTCCTTCBEEEETTEECSSCCHHHHHHHHTTCCSEEECEECC
T ss_pred EEEEEcCCCCcCEEEeccccCCCCeEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEEE
Confidence 34455566899999987766555788999999999999999999999999999999887888888887768888888876
No 77
>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic}
Probab=99.53 E-value=1.8e-13 Score=79.12 Aligned_cols=82 Identities=22% Similarity=0.336 Sum_probs=66.0
Q ss_pred EEEEEEe--c-CCCCccEEEecccCC-----CCCeEEEEECCCChhhhCC-CCCCCEEEEECCEeCCCCCHHHHHHHHhC
Q psy5188 28 EELKLKK--L-ECEAWGFRLTGGRDF-----GTPLTVLRVTGTSVAEEGG-MEVGDMIVSINGQCTQAMTHVEAQQHIIG 98 (109)
Q Consensus 28 ~~~~~~~--~-~~~~~G~~~~~~~~~-----~~~~~V~~v~~~~~a~~~G-l~~gD~I~~vng~~v~~~~~~~~~~~~~~ 98 (109)
+.+.+.+ . ...+|||++.++.+. ..++.|..|.+++||+++| |++||.|++|||.++.++++.+....++.
T Consensus 12 ~~~~v~l~r~~~~~~lG~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~ 91 (108)
T 2jre_A 12 SLYSVELFREKDTSSLGISISGMRDQSTTGEATGIYVKSLIPGSAAALDGRIEPNDKILRVDDVNVQGMAQSDVVEVLRN 91 (108)
T ss_dssp EEEEEEEECCSTTSCCSEEEECCCCCSCSSCCCCCEEEEECTTSHHHHHSSCCSSEEEEEETTEECTTSCHHHHHHHHHH
T ss_pred EEEEEEEEecCCCCCcCEEEEcccCCCCCCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence 3344444 3 348999999876532 2478999999999999999 99999999999999999888877777766
Q ss_pred CCCeEEEEEEC
Q psy5188 99 SGNTLTLQILR 109 (109)
Q Consensus 99 ~~~~v~l~v~r 109 (109)
.+..+.+++.|
T Consensus 92 ~g~~v~l~v~R 102 (108)
T 2jre_A 92 AGNPVRLLLIR 102 (108)
T ss_dssp HCSEEEEEEEE
T ss_pred CCCeEEEEEEe
Confidence 77888888865
No 78
>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.35A {Homo sapiens}
Probab=99.53 E-value=4.1e-13 Score=76.01 Aligned_cols=81 Identities=22% Similarity=0.405 Sum_probs=65.8
Q ss_pred EEEEEecCC-CCccEEEecccC----CCCCeEEEEECCCChhhhCC-CCCCCEEEEECCEeCCCCCHHHHHHHHhCCCCe
Q psy5188 29 ELKLKKLEC-EAWGFRLTGGRD----FGTPLTVLRVTGTSVAEEGG-MEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNT 102 (109)
Q Consensus 29 ~~~~~~~~~-~~~G~~~~~~~~----~~~~~~V~~v~~~~~a~~~G-l~~gD~I~~vng~~v~~~~~~~~~~~~~~~~~~ 102 (109)
.+++.+.+. .++||++.+... ...++.|..+.+++||+.+| |++||.|++|||.++.++++.+....++..+..
T Consensus 5 ~~~v~l~~~~~~lG~~i~~~~~~~~~~~~~~~V~~v~~~s~A~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~ 84 (97)
T 2iwn_A 5 TFDVELTKNVQGLGITIAGYIGDKKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQT 84 (97)
T ss_dssp EEEEEEECBTTBSCEEEECCCCC----CCCCEEEEECTTCHHHHHCCCCTTCEEEEETTEECTTSCHHHHHHHHHTCCSE
T ss_pred EEEEEEecCCCCCcEEEEccCCCCCCCCCCEEEEEeCCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCe
Confidence 345554444 789999987643 23478999999999999999 999999999999999998888777777777888
Q ss_pred EEEEEEC
Q psy5188 103 LTLQILR 109 (109)
Q Consensus 103 v~l~v~r 109 (109)
+.+++.|
T Consensus 85 v~l~v~r 91 (97)
T 2iwn_A 85 VLLTLMR 91 (97)
T ss_dssp EEEEEEE
T ss_pred EEEEEEe
Confidence 8888865
No 79
>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=99.53 E-value=1.9e-13 Score=80.94 Aligned_cols=79 Identities=23% Similarity=0.347 Sum_probs=66.0
Q ss_pred EEEecCC-CCccEEEecccCC-CCCeEEEEECCCChhhhCC-CCCCCEEEEECCEeCCCCCHHHHHHHHhCCCCeEEEEE
Q psy5188 31 KLKKLEC-EAWGFRLTGGRDF-GTPLTVLRVTGTSVAEEGG-MEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQI 107 (109)
Q Consensus 31 ~~~~~~~-~~~G~~~~~~~~~-~~~~~V~~v~~~~~a~~~G-l~~gD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v 107 (109)
.+.+... .++||++.++.+. ..+++|..|.+++||+++| |++||+|++|||.++.+.++.+....++..+..+.+++
T Consensus 28 ~v~l~k~~~glG~~l~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Ing~~v~~~~~~~~~~~~~~~~~~v~l~v 107 (124)
T 2daz_A 28 IIELEKDKNGLGLSLAGNKDRSRMSIFVVGINPEGPAAADGRMRIGDELLEINNQILYGRSHQNASAIIKTAPSKVKLVF 107 (124)
T ss_dssp EEEEECCSSCCCEEEECBSSTTSCCEEEEEECTTSHHHHHTCCCTTCEECEESSCBCTTSCHHHHHHHHHHSCSEEEEEE
T ss_pred EEEEEeCCCccCEEEeccCCCCcCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEE
Confidence 3444343 7999999987654 2578999999999999999 99999999999999999888888777777777888888
Q ss_pred EC
Q psy5188 108 LR 109 (109)
Q Consensus 108 ~r 109 (109)
.|
T Consensus 108 ~R 109 (124)
T 2daz_A 108 IR 109 (124)
T ss_dssp EE
T ss_pred Ee
Confidence 65
No 80
>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A 2lsr_A
Probab=99.52 E-value=1.2e-13 Score=87.40 Aligned_cols=81 Identities=31% Similarity=0.505 Sum_probs=70.1
Q ss_pred EEEEEEecCCCCccEEEecccCCCCCeEEEEECCCChhhhCCCCCCCEEEEECCEeCCCCCHHHHHHHHhCCCCeEEEEE
Q psy5188 28 EELKLKKLECEAWGFRLTGGRDFGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQI 107 (109)
Q Consensus 28 ~~~~~~~~~~~~~G~~~~~~~~~~~~~~V~~v~~~~~a~~~Gl~~gD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v 107 (109)
..+.+.+....++||++.++.+...+++|..|.+++||+++||++||+|++|||.++.++++.+....++. +..+.++|
T Consensus 86 ~~v~l~k~~~~~lG~~i~~~~~~~~~~~V~~V~~gspA~~aGL~~GD~Il~vng~~v~~~~~~~~~~~l~~-~~~v~l~v 164 (192)
T 3k1r_A 86 KEVRLDRLHPEGLGLSVRGGLEFGCGLFISHLIKGGQADSVGLQVGDEIVRINGYSISSCTHEEVINLIRT-EKTVSIKV 164 (192)
T ss_dssp EEEEEETTSTTCCCEEEEEEGGGTEEEEEEEECTTSHHHHTTCCTTEEEEEETTEECTTCCHHHHHHHHTS-SSEEEEEE
T ss_pred EEEEEEeCCCCceeEEEEcccccCCCEEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHcC-CCeEEEEE
Confidence 55677666568999999887665557899999999999999999999999999999999889888888877 88999988
Q ss_pred EC
Q psy5188 108 LR 109 (109)
Q Consensus 108 ~r 109 (109)
.|
T Consensus 165 ~r 166 (192)
T 3k1r_A 165 RH 166 (192)
T ss_dssp EE
T ss_pred EE
Confidence 65
No 81
>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.52 E-value=3e-14 Score=82.90 Aligned_cols=82 Identities=29% Similarity=0.408 Sum_probs=69.0
Q ss_pred EEEEEEecCCCCccEEEecccC---------CCCCeEEEEECCCChhhhCC-CCCCCEEEEECCEeCCCCCHHHHHHHHh
Q psy5188 28 EELKLKKLECEAWGFRLTGGRD---------FGTPLTVLRVTGTSVAEEGG-MEVGDMIVSINGQCTQAMTHVEAQQHII 97 (109)
Q Consensus 28 ~~~~~~~~~~~~~G~~~~~~~~---------~~~~~~V~~v~~~~~a~~~G-l~~gD~I~~vng~~v~~~~~~~~~~~~~ 97 (109)
+.+.+.+....+|||++.++.+ ...+++|..|.+++||+++| |++||+|++|||.++.++++.+....++
T Consensus 11 ~~v~l~k~~~~~lG~~i~gg~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~l~ 90 (111)
T 1uju_A 11 RELCIQKAPGERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLRVGLRLLEVNQQSLLGLTHGEAVQLLR 90 (111)
T ss_dssp SCEEEECCTTCCCCEEEECCSSSSCSCSSCTTCCCCEEEEECTTSHHHHHSSCCTTCBCCBBSSCBCTTSCHHHHHHHHS
T ss_pred EEEEEEECCCCccCEEEECCccccccccccCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence 3456665555899999998763 23468999999999999999 9999999999999999988998888888
Q ss_pred CCCCeEEEEEEC
Q psy5188 98 GSGNTLTLQILR 109 (109)
Q Consensus 98 ~~~~~v~l~v~r 109 (109)
..+..+.+++.|
T Consensus 91 ~~g~~v~l~v~r 102 (111)
T 1uju_A 91 SVGDTLTVLVCD 102 (111)
T ss_dssp SCSSEEEECCCC
T ss_pred cCCCeEEEEEEE
Confidence 788888888765
No 82
>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ, structural genomics; NMR {Homo sapiens}
Probab=99.52 E-value=9.1e-14 Score=82.73 Aligned_cols=82 Identities=22% Similarity=0.296 Sum_probs=68.4
Q ss_pred EEEEEEecCCCCccEEEecccCCC---CCeEEEEECCCChhhhCC-CCCCCEEEEECCEeCC-CCCHHHHHHHHhCCCCe
Q psy5188 28 EELKLKKLECEAWGFRLTGGRDFG---TPLTVLRVTGTSVAEEGG-MEVGDMIVSINGQCTQ-AMTHVEAQQHIIGSGNT 102 (109)
Q Consensus 28 ~~~~~~~~~~~~~G~~~~~~~~~~---~~~~V~~v~~~~~a~~~G-l~~gD~I~~vng~~v~-~~~~~~~~~~~~~~~~~ 102 (109)
+.+.+.+....+|||++.++.+.. .+++|..|.+++||+++| |++||+|++|||.++. ++++.++...++..+..
T Consensus 27 ~~v~l~k~~~~~lG~~i~g~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~~l~~~~~~ 106 (128)
T 2db5_A 27 EYIDIERPSTGGLGFSVVALRSQNLGKVDIFVKDVQPGSVADRDQRLKENDQILAINHTPLDQNISHQQAIALLQQTTGS 106 (128)
T ss_dssp EEEEEECCSSSCCCCEEEEEECSSSSCEEEEEECCCTTSHHHHTCCCCSSCBEEEESSCBCSTTSCHHHHHHHHHHCCSE
T ss_pred EEEEEEECCCCccCEEEecccCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCCHHHHHHHHHcCCCe
Confidence 555665544479999998765432 368899999999999999 9999999999999997 88999988888878889
Q ss_pred EEEEEEC
Q psy5188 103 LTLQILR 109 (109)
Q Consensus 103 v~l~v~r 109 (109)
+.++|.|
T Consensus 107 v~l~v~r 113 (128)
T 2db5_A 107 LRLIVAR 113 (128)
T ss_dssp EEEEEEE
T ss_pred EEEEEEc
Confidence 9998865
No 83
>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; PDZ domain, ATP-binding, cell junction, cell membrane; NMR {Homo sapiens} PDB: 2kpl_A
Probab=99.52 E-value=9.9e-14 Score=82.76 Aligned_cols=82 Identities=27% Similarity=0.436 Sum_probs=66.5
Q ss_pred EEEEEEec-CCCCccEEEecccCCCCCeEEEEECCCChhhhCC-CCCCCEEEEECCEeCCCCCHHHHHHHHhCC--CCeE
Q psy5188 28 EELKLKKL-ECEAWGFRLTGGRDFGTPLTVLRVTGTSVAEEGG-MEVGDMIVSINGQCTQAMTHVEAQQHIIGS--GNTL 103 (109)
Q Consensus 28 ~~~~~~~~-~~~~~G~~~~~~~~~~~~~~V~~v~~~~~a~~~G-l~~gD~I~~vng~~v~~~~~~~~~~~~~~~--~~~v 103 (109)
+.+++.+. +..+|||++.++.+...++.|..|.+++||+++| |++||+|++|||.++.++++.+....++.. +..+
T Consensus 18 ~~~~v~l~~~~~g~G~~i~g~~~~~~~v~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~l~~~~~g~~v 97 (129)
T 2kpk_A 18 KFIHTKLRKSSRGFGFTVVGGDEPDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKIFQSIPIGASV 97 (129)
T ss_dssp EEEEEEEEECSSCCSEEEEEEEETTEEEEEEEECTTSHHHHHSSCCTTCEEEEETTEECTTSCHHHHHHHHHHSCTTEEE
T ss_pred cEEEEEEEECCCcccEEEeCccCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeE
Confidence 33444333 3478999998866544468999999999999999 999999999999999998888888777664 6788
Q ss_pred EEEEEC
Q psy5188 104 TLQILR 109 (109)
Q Consensus 104 ~l~v~r 109 (109)
.+++.|
T Consensus 98 ~l~v~R 103 (129)
T 2kpk_A 98 DLELCR 103 (129)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 888865
No 84
>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.51 E-value=1.8e-13 Score=78.72 Aligned_cols=80 Identities=21% Similarity=0.420 Sum_probs=65.9
Q ss_pred EEEEEecCCCCccEEEecccCCCCCe-EEEEECCCChhhhCC-CCCCCEEEEECCEeCCCCCHHHHHHHHhC-----CCC
Q psy5188 29 ELKLKKLECEAWGFRLTGGRDFGTPL-TVLRVTGTSVAEEGG-MEVGDMIVSINGQCTQAMTHVEAQQHIIG-----SGN 101 (109)
Q Consensus 29 ~~~~~~~~~~~~G~~~~~~~~~~~~~-~V~~v~~~~~a~~~G-l~~gD~I~~vng~~v~~~~~~~~~~~~~~-----~~~ 101 (109)
.+.+. ....+|||++.++.+...+. +|..+.+++||+++| |++||.|++|||.++.++++.++...++. .+.
T Consensus 9 ~v~l~-k~~~glG~~i~gg~~~~~~~~~I~~v~~~s~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~~~~~ 87 (103)
T 1ufx_A 9 LVRVK-KSAATLGIAIEGGANTRQPLPRIVTIQRGGSAHNCGQLKVGHVILEVNGLTLRGKEHREAARIIAEAFKTKDRD 87 (103)
T ss_dssp EEEEE-CCSSSCCEEEECBTTSSCSSCEEEEECTTSHHHHHCSSCTTCBCCEETTEECTTCBHHHHHHHHHHHHHCSSCS
T ss_pred EEEEE-cCCCcCCeEEECCCCCCCCcEEEEEeCCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHHhcccCCCC
Confidence 34443 34489999999887765454 899999999999999 99999999999999999889988888765 467
Q ss_pred eEEEEEEC
Q psy5188 102 TLTLQILR 109 (109)
Q Consensus 102 ~v~l~v~r 109 (109)
.+.+.+.|
T Consensus 88 ~i~l~v~r 95 (103)
T 1ufx_A 88 YIDFLVTE 95 (103)
T ss_dssp EEEEEECC
T ss_pred eEEEEEEE
Confidence 78888765
No 85
>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding protein, membrane, sensory transduction, vision; 1.55A {Drosophila melanogaster} PDB: 2qkt_A 2qku_A
Probab=99.51 E-value=5e-13 Score=75.84 Aligned_cols=76 Identities=17% Similarity=0.298 Sum_probs=62.8
Q ss_pred EEEecCCCCccEEEecccCCCCCeEEEEECCCChhhhCC-CCCCCEEEEECCEeCCCCCHHHHHHHHhCCCCeEEEEEEC
Q psy5188 31 KLKKLECEAWGFRLTGGRDFGTPLTVLRVTGTSVAEEGG-MEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQILR 109 (109)
Q Consensus 31 ~~~~~~~~~~G~~~~~~~~~~~~~~V~~v~~~~~a~~~G-l~~gD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~r 109 (109)
.+......++|+.+... ..++.|..|.+++||+++| |++||.|++|||.++.+..+.+....++..++.+.+++.|
T Consensus 13 ~l~~~~~~glG~~~~~~---~~gv~V~~V~~~spA~~aG~L~~GD~I~~Ing~~v~~~~~~~~~~~~~~~~~~v~l~v~R 89 (96)
T 2qkv_A 13 DLMKKAGKELGLSLSPN---EIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVSYALFKGANGKVSMEVTR 89 (96)
T ss_dssp EEECBTTBCCCEEEEEC---SSSEEEEEECTTSCHHHHHHCCTTCEEEEETTEECTTCCHHHHHHHHHTCSSEEEEEEEC
T ss_pred EEEeCCCCCccEEEEeC---CCcEEEEEeCCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCcEEEEEEe
Confidence 33333457899987652 2368999999999999999 9999999999999999888888777777777889998876
No 86
>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune enteropathy-related antigen AIE-75 ,antigen NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2kbs_A
Probab=99.51 E-value=2.3e-13 Score=79.40 Aligned_cols=81 Identities=25% Similarity=0.368 Sum_probs=66.5
Q ss_pred EEEEEEecCCCCccEEEecccCCCCCeEEEEECCCChhhhCCCCCCCEEEEECCEeCCCCCHHHHHHHHhCCCCeEEEEE
Q psy5188 28 EELKLKKLECEAWGFRLTGGRDFGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQI 107 (109)
Q Consensus 28 ~~~~~~~~~~~~~G~~~~~~~~~~~~~~V~~v~~~~~a~~~Gl~~gD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v 107 (109)
+++.+.+.+..+|||.+.++.+...++.|..|.+++||+.+||++||.|++|||.++.++.+.+....++.. ..+.+++
T Consensus 17 ~~v~~~~~~~~~lG~~l~~~~~~~~gv~V~~V~~~s~A~~aGL~~GD~Il~vng~~v~~~~~~~~~~~~~~~-~~v~l~v 95 (114)
T 1x5n_A 17 KKVFISLVGSRGLGCSISSGPIQKPGIFISHVKPGSLSAEVGLEIGDQIVEVNGVDFSNLDHKEAVNVLKSS-RSLTISI 95 (114)
T ss_dssp EEEEECCCSSCCCCEEEEECCSSSCSEEEEEECTTSTTTTTTCCTTCEEEEETTEETTSCCTTHHHHHHHHC-SSEEEEE
T ss_pred EEEEEEEcCCCceeEEEeecCCCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhcC-CeEEEEE
Confidence 566776666789999998776655689999999999999999999999999999999998765555555544 5777877
Q ss_pred EC
Q psy5188 108 LR 109 (109)
Q Consensus 108 ~r 109 (109)
.|
T Consensus 96 ~r 97 (114)
T 1x5n_A 96 VA 97 (114)
T ss_dssp CS
T ss_pred Ec
Confidence 65
No 87
>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=99.51 E-value=2.1e-13 Score=78.94 Aligned_cols=81 Identities=25% Similarity=0.377 Sum_probs=67.2
Q ss_pred EEEEEEecCCCCccEEEecccC----CCCCeEEEEECCCChhhhCC-CCCCCEEEEECCEeCCCCCHHHHHHHHhCC-CC
Q psy5188 28 EELKLKKLECEAWGFRLTGGRD----FGTPLTVLRVTGTSVAEEGG-MEVGDMIVSINGQCTQAMTHVEAQQHIIGS-GN 101 (109)
Q Consensus 28 ~~~~~~~~~~~~~G~~~~~~~~----~~~~~~V~~v~~~~~a~~~G-l~~gD~I~~vng~~v~~~~~~~~~~~~~~~-~~ 101 (109)
..+.+.+. ..+|||++.++.+ ...+++|..|.+++||+++| |++||+|++|||.++.++++.++...++.. +.
T Consensus 17 ~~v~l~k~-~~glG~~i~~~~~~~~~~~~g~~V~~v~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~ 95 (108)
T 2d92_A 17 KIVELVKD-CKGLGFSILDYQDPLDPTRSVIVIRSLVADGVAERSGGLLPGDRLVSVNEYCLDNTSLAEAVEILKAVPPG 95 (108)
T ss_dssp EEEEEEEC-SSCCSEEEEEEECSSCTTCEEEEEEEECTTCHHHHHTCCCTTCEEEEESSCBCTTCCHHHHHHHHHHSCSE
T ss_pred EEEEEEEC-CCccCEEEecccccCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCC
Confidence 45566554 4799999988654 23468899999999999999 999999999999999998899888888774 56
Q ss_pred eEEEEEEC
Q psy5188 102 TLTLQILR 109 (109)
Q Consensus 102 ~v~l~v~r 109 (109)
.+.+++.|
T Consensus 96 ~v~l~v~R 103 (108)
T 2d92_A 96 LVHLGICS 103 (108)
T ss_dssp EEEEEEEC
T ss_pred eEEEEEEc
Confidence 88898876
No 88
>2o2t_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 2.70A {Homo sapiens}
Probab=99.51 E-value=1.1e-13 Score=81.20 Aligned_cols=82 Identities=30% Similarity=0.392 Sum_probs=68.1
Q ss_pred EEEEEEecCCCCccEEEecccCC---CCCeEEEEECCCChhhhCC-CCCCCEEEEECCEeCC-CCCHHHHHHHHhCCCCe
Q psy5188 28 EELKLKKLECEAWGFRLTGGRDF---GTPLTVLRVTGTSVAEEGG-MEVGDMIVSINGQCTQ-AMTHVEAQQHIIGSGNT 102 (109)
Q Consensus 28 ~~~~~~~~~~~~~G~~~~~~~~~---~~~~~V~~v~~~~~a~~~G-l~~gD~I~~vng~~v~-~~~~~~~~~~~~~~~~~ 102 (109)
..+.+.+....++||++.++... ..+++|..|.+++||+++| |++||.|++|||.++. ++++.+....++..+..
T Consensus 22 ~~v~l~k~~~~~lG~~i~~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~Il~ing~~v~~~~~~~~~~~~l~~~~~~ 101 (117)
T 2o2t_A 22 EVFELLKPPSGGLGFSVVGLRSENRGELGIFVQEIQEGSVAHRDGRLKETDQILAINGQALDQTITHQQAISILQKAKDT 101 (117)
T ss_dssp EEEEEECCSSSCSSCCEEEEECCC--CEEEEECCCCTTSHHHHHCCCCTTCEEEEETTEECCTTSCHHHHHHHHHHCCSE
T ss_pred EEEEEEECCCCCCCEEEeecccCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCCHHHHHHHHHcCCCE
Confidence 55566554458899998876532 2468899999999999999 9999999999999998 88888888888778889
Q ss_pred EEEEEEC
Q psy5188 103 LTLQILR 109 (109)
Q Consensus 103 v~l~v~r 109 (109)
+.+++.|
T Consensus 102 v~l~v~R 108 (117)
T 2o2t_A 102 VQLVIAR 108 (117)
T ss_dssp EEEEEES
T ss_pred EEEEEEe
Confidence 9999876
No 89
>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.51 E-value=2.8e-13 Score=78.25 Aligned_cols=81 Identities=22% Similarity=0.291 Sum_probs=65.7
Q ss_pred EEEEEecC-CCCccEEEec---ccCC---CCCeEEEEECCCChhhhCC-CCCCCEEEEECCEeCCCCCHHHHHHHHhCCC
Q psy5188 29 ELKLKKLE-CEAWGFRLTG---GRDF---GTPLTVLRVTGTSVAEEGG-MEVGDMIVSINGQCTQAMTHVEAQQHIIGSG 100 (109)
Q Consensus 29 ~~~~~~~~-~~~~G~~~~~---~~~~---~~~~~V~~v~~~~~a~~~G-l~~gD~I~~vng~~v~~~~~~~~~~~~~~~~ 100 (109)
.+.+.+.. ..+|||++.+ +.+. ..+++|..|.+++||+++| |++||+|++|||.++.++++.+....++..+
T Consensus 10 ~~~v~l~k~~~glG~~i~~~~~g~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~~ 89 (107)
T 1wf8_A 10 LFPVELEKDEDGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQNFAATVLRNTK 89 (107)
T ss_dssp EEEEEEECBTTBSCEEEEEEEESCCTTCCEEEEEEEEECTTCHHHHHCSSCTTCBEEEETTEECBSCCHHHHHHHHHHCC
T ss_pred EEEEEEEECCCcccEEEEecCCCCCCCCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHhcCC
Confidence 33444433 3799999987 3322 2368899999999999999 9999999999999999988888887787778
Q ss_pred CeEEEEEEC
Q psy5188 101 NTLTLQILR 109 (109)
Q Consensus 101 ~~v~l~v~r 109 (109)
..+.+++.|
T Consensus 90 ~~v~l~v~R 98 (107)
T 1wf8_A 90 GNVRFVIGR 98 (107)
T ss_dssp SEEEEEEEE
T ss_pred CeEEEEEEe
Confidence 899998875
No 90
>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti density, glutametergic receptors, carbohydrate metabolism, cycle, cell division; HET: MES; 1.85A {Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A
Probab=99.50 E-value=3e-13 Score=84.25 Aligned_cols=82 Identities=23% Similarity=0.339 Sum_probs=67.9
Q ss_pred EEEEEEecCC-CCccEEEec---ccCC---CCCeEEEEECCCChhhhCC-CCCCCEEEEECCEeCCCCCHHHHHHHHhCC
Q psy5188 28 EELKLKKLEC-EAWGFRLTG---GRDF---GTPLTVLRVTGTSVAEEGG-MEVGDMIVSINGQCTQAMTHVEAQQHIIGS 99 (109)
Q Consensus 28 ~~~~~~~~~~-~~~G~~~~~---~~~~---~~~~~V~~v~~~~~a~~~G-l~~gD~I~~vng~~v~~~~~~~~~~~~~~~ 99 (109)
+.+++.+.+. .+|||++.+ +.+. ..+++|..|.+++||+++| |++||+|++|||.++.++++.++...++.+
T Consensus 80 ~~~~v~l~k~~~glG~~i~g~~~g~~~~~~~~gi~V~~V~~gspA~~aG~L~~GD~Il~VNG~~v~~~~~~~~~~~l~~~ 159 (170)
T 3egg_C 80 ELFPVELEKDSEGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLRNT 159 (170)
T ss_dssp EEEEEEEECBTTBSSEEEEEECSSSSCCSSSBEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTBCHHHHHHHHHHC
T ss_pred eEEEEEEEeCCCeEeEEEEecccCCccccCCCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence 4445544433 799999987 3222 2468999999999999999 999999999999999999999999888888
Q ss_pred CCeEEEEEEC
Q psy5188 100 GNTLTLQILR 109 (109)
Q Consensus 100 ~~~v~l~v~r 109 (109)
+..+.|+|.|
T Consensus 160 g~~v~L~V~R 169 (170)
T 3egg_C 160 KGRVRFMIGR 169 (170)
T ss_dssp CSEEEEEEEE
T ss_pred CCEEEEEEEe
Confidence 8999999876
No 91
>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.50 E-value=2.2e-13 Score=79.92 Aligned_cols=79 Identities=27% Similarity=0.391 Sum_probs=65.1
Q ss_pred EEEEecCCCCccEEEecccCC------CCCeEEEEECCCChhhhCCCCCCCEEEEECCEeCCCCCHHHHHHHHhCCCCeE
Q psy5188 30 LKLKKLECEAWGFRLTGGRDF------GTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTL 103 (109)
Q Consensus 30 ~~~~~~~~~~~G~~~~~~~~~------~~~~~V~~v~~~~~a~~~Gl~~gD~I~~vng~~v~~~~~~~~~~~~~~~~~~v 103 (109)
+.+.+....+|||++.++.+. ..+++|..|.+++||+ +||++||.|++|||.++.++++.+....++..+..+
T Consensus 18 v~l~k~~~~glG~~i~gg~~~~~~~~~~~gv~V~~V~~~spA~-~gL~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~v 96 (117)
T 2csj_A 18 VTLQKDSKRGFGIAVSGGRDNPHFENGETSIVISDVLPGGPAD-GLLQENDRVVMVNGTPMEDVLHSFAVQQLRKSGKIA 96 (117)
T ss_dssp EEEECCSSSTTCEEEECCSSCCCCSSCCCBCEEEEECTTSSHH-HHBCTTCEEEEESSCBCBTCCHHHHHHHHHHSCSEE
T ss_pred EEEEECCCCccCEEEeCCcCCccccCCCCCEEEEEECCCCccc-ccCCCCCEEEEECCEECCCcCHHHHHHHHhcCCCeE
Confidence 344433337999999987653 3468999999999997 889999999999999999998888888887778899
Q ss_pred EEEEEC
Q psy5188 104 TLQILR 109 (109)
Q Consensus 104 ~l~v~r 109 (109)
.++|.|
T Consensus 97 ~l~v~R 102 (117)
T 2csj_A 97 AIVVKR 102 (117)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 998865
No 92
>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling protein; NMR {Homo sapiens}
Probab=99.50 E-value=1.2e-13 Score=76.29 Aligned_cols=68 Identities=25% Similarity=0.369 Sum_probs=58.6
Q ss_pred CCccEEEecccCCCCCeEEEEECCCChhhhCCCCCCCEEEEECCEeCCCCCHHHHHHHHhCCCCeEEEEEEC
Q psy5188 38 EAWGFRLTGGRDFGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQILR 109 (109)
Q Consensus 38 ~~~G~~~~~~~~~~~~~~V~~v~~~~~a~~~Gl~~gD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~r 109 (109)
.++||.+.+.. ++.|..+.+++||+.+||++||.|+++||.++.++++.+....++..+..+.+++.|
T Consensus 13 ~g~G~~~~~~~----~~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~R 80 (83)
T 2kv8_A 13 AGYGFTLSGQA----PCVLSCVMRGSPADFVGLRAGDQILAVNEINVKKASHEDVVKLIGKCSGVLHMVIAE 80 (83)
T ss_dssp SCCSCBCCCSS----SCBCCBCCTTSTTTTTTCCTTCEEEEETTEECSSCCHHHHHHHHTTCSSCEEEEEEC
T ss_pred CcccEEEEcCC----CeEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEEc
Confidence 78898876532 688999999999999999999999999999999998788777777766778898876
No 93
>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.50 E-value=2.8e-13 Score=77.60 Aligned_cols=80 Identities=26% Similarity=0.449 Sum_probs=64.7
Q ss_pred EEEEEEecCCCCccEEEecccCCCCCeEEEEECCCChhhhCCCCCCCEEEEECCEeCCCCCHHHHHHHHhCCCCeEEEEE
Q psy5188 28 EELKLKKLECEAWGFRLTGGRDFGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQI 107 (109)
Q Consensus 28 ~~~~~~~~~~~~~G~~~~~~~~~~~~~~V~~v~~~~~a~~~Gl~~gD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v 107 (109)
+.+.+.+ +..+|||.+.+..+ ..++.|..|.+++||+.+||++||.|++|||.++.++++.+....++..+..+.+++
T Consensus 8 r~v~l~k-~~~g~G~~l~~~~~-~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v 85 (102)
T 2d90_A 8 RVVVIKK-GSNGYGFYLRAGPE-QKGQIIKDIEPGSPAEAAGLKNNDLVVAVNGKSVEALDHDGVVEMIRKGGDQTTLLV 85 (102)
T ss_dssp EEEEEEC-CSSSSSCEEEECSS-SSSEEEECCCTTSTTTTTTCCTTCEEEEESSCBCTTSCHHHHHHHHHHSTTEEEEEE
T ss_pred EEEEEee-CCCCccEEEEeecC-CCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEEEE
Confidence 3445543 33789999987543 237999999999999999999999999999999999877777777766778888888
Q ss_pred EC
Q psy5188 108 LR 109 (109)
Q Consensus 108 ~r 109 (109)
.|
T Consensus 86 ~r 87 (102)
T 2d90_A 86 LD 87 (102)
T ss_dssp CS
T ss_pred EE
Confidence 64
No 94
>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker, structural genomics, struc genomics consortium, SGC, structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1
Probab=99.50 E-value=6.4e-13 Score=76.12 Aligned_cols=80 Identities=24% Similarity=0.395 Sum_probs=62.8
Q ss_pred EEEEecCCCCccEEEecccCC---------CCCeEEEEECCCChhhhCC-CCCCCEEEEECCEeCCCCCHHHHHHHHhCC
Q psy5188 30 LKLKKLECEAWGFRLTGGRDF---------GTPLTVLRVTGTSVAEEGG-MEVGDMIVSINGQCTQAMTHVEAQQHIIGS 99 (109)
Q Consensus 30 ~~~~~~~~~~~G~~~~~~~~~---------~~~~~V~~v~~~~~a~~~G-l~~gD~I~~vng~~v~~~~~~~~~~~~~~~ 99 (109)
+.+.+.....+|+++.+.... ..++.|..|.+++||+++| |++||.|++|||.++.++++.+....++..
T Consensus 8 v~l~~~~~~~lG~~~~~~~~~~~~~~~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~ 87 (103)
T 2fcf_A 8 VELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKA 87 (103)
T ss_dssp EEECCCC-CCCCEEEECCCC-------------EEEEEECSSSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTC
T ss_pred EEEEeCCCCceeEEEEccCCCCcccccCCCCCCEEEEEeCCCCcHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence 344443347899998765431 1368999999999999999 999999999999999988888888888777
Q ss_pred CCeEEEEEEC
Q psy5188 100 GNTLTLQILR 109 (109)
Q Consensus 100 ~~~v~l~v~r 109 (109)
+..+.+++.|
T Consensus 88 ~~~v~l~v~r 97 (103)
T 2fcf_A 88 GNPVVFMVQS 97 (103)
T ss_dssp CSSEEEEEEC
T ss_pred CCcEEEEEEE
Confidence 6788888876
No 95
>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus}
Probab=99.50 E-value=1e-12 Score=83.37 Aligned_cols=82 Identities=23% Similarity=0.331 Sum_probs=70.0
Q ss_pred EEEEEEecCCCCccEEEecccCCCCCeEEEEECCCChhhhC-CCCCCCEEEEECCEeCCCCCHHHHHHHHhCCCCeEEEE
Q psy5188 28 EELKLKKLECEAWGFRLTGGRDFGTPLTVLRVTGTSVAEEG-GMEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQ 106 (109)
Q Consensus 28 ~~~~~~~~~~~~~G~~~~~~~~~~~~~~V~~v~~~~~a~~~-Gl~~gD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~ 106 (109)
..+.+.+....+|||++.++.+...++.|..+.+++||+++ ||++||.|++|||.++.++++.+....++..+..+.++
T Consensus 9 ~~v~l~~~~~~~lG~~i~~~~~~~~~~~V~~v~~~spA~~aggl~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~l~ 88 (200)
T 2qt5_A 9 TVVELMKKEGTTLGLTVSGGIDKDGKPRVSNLRQGGIAARSDQLDVGDYIKAVNGINLAKFRHDEIISLLKNVGERVVLE 88 (200)
T ss_dssp EEEEEECCTTCCCCEEEECCTTSSSCSEEEEECTTSHHHHTTSCCTTCEEEEETTEECTTSCHHHHHHHHHTCCSEEEEE
T ss_pred EEEEEEeCCCCCCCEEEecccCCCCCeEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEE
Confidence 44566555668999999988766667899999999999999 89999999999999999998888887787778888888
Q ss_pred EEC
Q psy5188 107 ILR 109 (109)
Q Consensus 107 v~r 109 (109)
+.|
T Consensus 89 v~R 91 (200)
T 2qt5_A 89 VEY 91 (200)
T ss_dssp EEE
T ss_pred Eec
Confidence 864
No 96
>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics, alternative splicing, cell cycle, cell division, cell junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A
Probab=99.50 E-value=6.5e-13 Score=77.09 Aligned_cols=82 Identities=21% Similarity=0.363 Sum_probs=65.9
Q ss_pred EEEEEEecCC-CCccEEEecccCC---CCCeEEEEECCCChhhhCC-CCCCCEEEEECCEeCCCCCHHHHHHHHhCC--C
Q psy5188 28 EELKLKKLEC-EAWGFRLTGGRDF---GTPLTVLRVTGTSVAEEGG-MEVGDMIVSINGQCTQAMTHVEAQQHIIGS--G 100 (109)
Q Consensus 28 ~~~~~~~~~~-~~~G~~~~~~~~~---~~~~~V~~v~~~~~a~~~G-l~~gD~I~~vng~~v~~~~~~~~~~~~~~~--~ 100 (109)
+.+.+.+.+. .++||++.+..+. ..++.|..|.+++||+++| |++||.|++|||.++.++++.+....++.. +
T Consensus 11 ~~~~~~l~~~~~glG~~~~~~~~~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~g 90 (111)
T 2koj_A 11 KRLNIQLKKGTEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLAGKSQEEVVSLLRSTKME 90 (111)
T ss_dssp EEEEEEEECBTTBTCEEEEECSCSSSSSSCEEEEEECSSSHHHHHCSSCTTCEEEEETTEECTTSCHHHHHHHHHHCCCS
T ss_pred cEEEEEEEECCCccCEEEEeccCCCCCCcCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCC
Confidence 3445544444 7999999876532 2479999999999999999 999999999999999988888877777653 7
Q ss_pred CeEEEEEEC
Q psy5188 101 NTLTLQILR 109 (109)
Q Consensus 101 ~~v~l~v~r 109 (109)
..+.+++.|
T Consensus 91 ~~v~l~v~R 99 (111)
T 2koj_A 91 GTVSLLVFR 99 (111)
T ss_dssp SEEEEEEEE
T ss_pred CeEEEEEEe
Confidence 888888865
No 97
>3sfj_A TAX1-binding protein 3; PDZ:peptide complex, signaling protein-inhibitor complex; 1.24A {Homo sapiens} PDB: 3dj3_A
Probab=99.50 E-value=5.1e-13 Score=76.66 Aligned_cols=72 Identities=31% Similarity=0.466 Sum_probs=60.9
Q ss_pred CCccEEEecccCC------------CCCeEEEEECCCChhhhCCCCCCCEEEEECCEeCCCCCHHHHHHHHhC-CCCeEE
Q psy5188 38 EAWGFRLTGGRDF------------GTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIG-SGNTLT 104 (109)
Q Consensus 38 ~~~G~~~~~~~~~------------~~~~~V~~v~~~~~a~~~Gl~~gD~I~~vng~~v~~~~~~~~~~~~~~-~~~~v~ 104 (109)
.+|||++.++.+. ..++.|..|.+++||+++||++||.|+++||.++.+.++.+....++. .+..+.
T Consensus 19 ~~lG~~i~g~~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~~g~~v~ 98 (104)
T 3sfj_A 19 LILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAGLQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVR 98 (104)
T ss_dssp EECSEEEEECTTSCGGGCSSCSSTTCCSEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHTCTTCSEEE
T ss_pred CcccEEEECccccCccccccccCCCCCCEEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCEEE
Confidence 4799999865432 346899999999999999999999999999999998888887777765 467888
Q ss_pred EEEEC
Q psy5188 105 LQILR 109 (109)
Q Consensus 105 l~v~r 109 (109)
+++.|
T Consensus 99 l~v~R 103 (104)
T 3sfj_A 99 LLVTR 103 (104)
T ss_dssp EEEEE
T ss_pred EEEEc
Confidence 88875
No 98
>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein, STXBP4 protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.49 E-value=5e-13 Score=77.59 Aligned_cols=76 Identities=21% Similarity=0.329 Sum_probs=64.0
Q ss_pred ecCCCCccEEEecccCC--CCCeEEEEECCCChhhhCC-CCCCCEEEEECCEeCCCCCHHHHHHHHhCC----CCeEEEE
Q psy5188 34 KLECEAWGFRLTGGRDF--GTPLTVLRVTGTSVAEEGG-MEVGDMIVSINGQCTQAMTHVEAQQHIIGS----GNTLTLQ 106 (109)
Q Consensus 34 ~~~~~~~G~~~~~~~~~--~~~~~V~~v~~~~~a~~~G-l~~gD~I~~vng~~v~~~~~~~~~~~~~~~----~~~v~l~ 106 (109)
+....++||++.++.+. ..+++|..+.+++||+++| |++||+|++|||.++.++++.++..+++.. +..+.+.
T Consensus 21 l~k~~glG~~i~gg~~~~~~~~~~V~~v~~~s~A~~aG~l~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~r~~~~~~l~ 100 (109)
T 1wi4_A 21 VTKETGLGLKILGGINRNEGPLVYIHEVIPGGDCYKDGRLKPGDQLVSINKESMIGVSFEEAKSIITRAKLRSESPWEIA 100 (109)
T ss_dssp ECCSSCCCEEEEECSSSSSCSSEEEEEECTTSHHHHHCSCCTTCBEEEETTSCCTTCCHHHHHHHHHHSCCSSSSCEEEE
T ss_pred EeCCCccCEEEEeccCCCCCCCEEEEEeCCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHccccCCCceEEEE
Confidence 33458999999987653 2368999999999999999 999999999999999999999888888653 5778888
Q ss_pred EEC
Q psy5188 107 ILR 109 (109)
Q Consensus 107 v~r 109 (109)
+.|
T Consensus 101 v~R 103 (109)
T 1wi4_A 101 FIR 103 (109)
T ss_dssp EEC
T ss_pred EEe
Confidence 776
No 99
>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural proteomics in europe, spine, structural genomics, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.49 E-value=2.5e-13 Score=78.57 Aligned_cols=73 Identities=25% Similarity=0.409 Sum_probs=62.5
Q ss_pred CCCccEEEe-----cccCC---CCCeEEEEECCCChhhhCC-CCCCCEEEEECCEeCCCCCHHHHHHHHhCCCCeEEEEE
Q psy5188 37 CEAWGFRLT-----GGRDF---GTPLTVLRVTGTSVAEEGG-MEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQI 107 (109)
Q Consensus 37 ~~~~G~~~~-----~~~~~---~~~~~V~~v~~~~~a~~~G-l~~gD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v 107 (109)
..+|||++. ++.+. ..+++|..|.+++||+++| |++||.|++|||.++.++++.+....++..+..+.+++
T Consensus 19 ~~~lG~~i~~~~~~gg~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~l~v 98 (108)
T 1q7x_A 19 DNSLGISVTVLFDKGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLL 98 (108)
T ss_dssp SCSCCEEESSSSSSBCBCTTSSSCCCBEEEECTTSTHHHHTCCCSSCEEEEETTEECBSCTTSHHHHHHHHTTSEEEEEE
T ss_pred CCCccEEEEEeccCCCccccCCCCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEE
Confidence 479999998 65442 3578999999999999999 99999999999999998777777777777788999998
Q ss_pred EC
Q psy5188 108 LR 109 (109)
Q Consensus 108 ~r 109 (109)
.|
T Consensus 99 ~R 100 (108)
T 1q7x_A 99 EK 100 (108)
T ss_dssp EC
T ss_pred Ee
Confidence 76
No 100
>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain, adaptor protein, SR-BI, signaling protein; 1.30A {Mus musculus} SCOP: b.36.1.0 PDB: 3r69_A*
Probab=99.49 E-value=2.7e-13 Score=76.63 Aligned_cols=79 Identities=27% Similarity=0.450 Sum_probs=63.3
Q ss_pred EEEEEEecCCCCccEEEecccCCCCCeEEEEECCCChhhhCCCCCCCEEEEECCEeCCCCCHHHHHHHHhCCCCeEEEEE
Q psy5188 28 EELKLKKLECEAWGFRLTGGRDFGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQI 107 (109)
Q Consensus 28 ~~~~~~~~~~~~~G~~~~~~~~~~~~~~V~~v~~~~~a~~~Gl~~gD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v 107 (109)
+.+.+.+ +..++||.+.++... .++.|..|.+++||+++||++||.|++|||.++.++++.+....++..+..+.+.+
T Consensus 7 r~v~l~~-~~~~~G~~l~~~~~~-~~~~V~~v~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~~~~~~ 84 (95)
T 3r68_A 7 RVVVIKK-GSNGYGFYLRAGPEQ-KGQIIKDIEPGSPAEAAGLKNNDLVVAVNGKSVEALDHDGVVEMIRKGGDQTTLLV 84 (95)
T ss_dssp EEEEEEC-BTTBCSCEEEEC--C-CSEEEECCCTTSHHHHHTCCTTEEEEEETTEECTTCCHHHHHHHHHTTTTEEEEEE
T ss_pred EEEEEec-CCCcccEEEEecCCC-CCEEEEEECCCCHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEE
Confidence 3344443 347999999866543 37899999999999999999999999999999999988888888888777777665
Q ss_pred E
Q psy5188 108 L 108 (109)
Q Consensus 108 ~ 108 (109)
.
T Consensus 85 ~ 85 (95)
T 3r68_A 85 L 85 (95)
T ss_dssp E
T ss_pred E
Confidence 4
No 101
>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI, structural genomics, alternative splicing, cell cycle, cell division, cell junction; NMR {Homo sapiens}
Probab=99.49 E-value=1.2e-12 Score=77.25 Aligned_cols=82 Identities=21% Similarity=0.357 Sum_probs=66.4
Q ss_pred EEEEEEecCC-CCccEEEecccCC---CCCeEEEEECCCChhhhCC-CCCCCEEEEECCEeCCCCCHHHHHHHHhCC--C
Q psy5188 28 EELKLKKLEC-EAWGFRLTGGRDF---GTPLTVLRVTGTSVAEEGG-MEVGDMIVSINGQCTQAMTHVEAQQHIIGS--G 100 (109)
Q Consensus 28 ~~~~~~~~~~-~~~G~~~~~~~~~---~~~~~V~~v~~~~~a~~~G-l~~gD~I~~vng~~v~~~~~~~~~~~~~~~--~ 100 (109)
+.+.+.+.+. .++||++.+.... ..++.|..|.+++||+++| |++||+|++|||.++.++++.+....++.. +
T Consensus 30 ~~~~v~l~~~~~~lG~~l~~~~~~~~g~~gv~V~~V~~gspA~~aG~L~~GD~Il~Ing~~v~~~~~~~~~~~l~~~~~g 109 (121)
T 2kom_A 30 KRLNIQLKKGTEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLVGKSQEEVVSLLRSTKME 109 (121)
T ss_dssp EEEEEEEECCTTCCCEEEECCCCSSSSSCCEEEEEECTTSHHHHHTCCCSSSEEEEETTEECTTSCHHHHHHHHHHCCSS
T ss_pred eEEEEEEEcCCCcEeEEEEeccCCcCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCC
Confidence 4455655454 7899999876532 2478999999999999999 999999999999999988777777777653 7
Q ss_pred CeEEEEEEC
Q psy5188 101 NTLTLQILR 109 (109)
Q Consensus 101 ~~v~l~v~r 109 (109)
..+.++|.|
T Consensus 110 ~~v~l~v~R 118 (121)
T 2kom_A 110 GTVSLLVFR 118 (121)
T ss_dssp CEEEEEEEE
T ss_pred CEEEEEEEe
Confidence 888888875
No 102
>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1 protein, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.49 E-value=1e-12 Score=76.64 Aligned_cols=79 Identities=19% Similarity=0.270 Sum_probs=66.1
Q ss_pred EEEEEEecCCCCccEEEecccCCCCCeEEEEECCCChhhhCCC-CCCCEEEEECCEeCCCCCHHHHHHHHhCCCCeEEEE
Q psy5188 28 EELKLKKLECEAWGFRLTGGRDFGTPLTVLRVTGTSVAEEGGM-EVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQ 106 (109)
Q Consensus 28 ~~~~~~~~~~~~~G~~~~~~~~~~~~~~V~~v~~~~~a~~~Gl-~~gD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~ 106 (109)
+.+.+.+....++||.+.... .++.|..|.+++||+++|+ ++||+|++|||.++.++++.+....++..+..+.++
T Consensus 27 ~~v~l~k~~~~~lG~~i~~~~---~gv~V~~V~~~spA~~aGll~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~~v~l~ 103 (113)
T 1va8_A 27 KIVRIEKARDIPLGATVRNEM---DSVIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDVNEVFDLLSDMHGTLTFV 103 (113)
T ss_dssp EEEEEEECTTCCCCEEEEECS---SSEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCEEEEEE
T ss_pred EEEEEEeCCCCceeEEEEeCC---CCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEE
Confidence 556666655569999987652 3789999999999999998 999999999999999888888888887766788888
Q ss_pred EEC
Q psy5188 107 ILR 109 (109)
Q Consensus 107 v~r 109 (109)
+.|
T Consensus 104 v~r 106 (113)
T 1va8_A 104 LIP 106 (113)
T ss_dssp EEC
T ss_pred EEE
Confidence 875
No 103
>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1 interacting protein 1, activin receptor interacting protein 1; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.49 E-value=2.6e-14 Score=82.00 Aligned_cols=73 Identities=38% Similarity=0.661 Sum_probs=62.9
Q ss_pred CCCccEEEecccCCCCCeEEEEECCCChhhhCC-CCCCCEEEEECCEeCCCCCHHHHHHHHhCCCCeEEEEEEC
Q psy5188 37 CEAWGFRLTGGRDFGTPLTVLRVTGTSVAEEGG-MEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQILR 109 (109)
Q Consensus 37 ~~~~G~~~~~~~~~~~~~~V~~v~~~~~a~~~G-l~~gD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~r 109 (109)
..++||.+.++.+...++.|..|.+++||+++| |++||.|++|||.++.++++.+....++..+..+.+++.|
T Consensus 21 ~~g~G~~~~~~~~~~~~~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~l~v~R 94 (103)
T 1wfv_A 21 AKGFGFSIRGGREYKMDLYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRDMTHARAIELIKSGGRRVRLLLKR 94 (103)
T ss_dssp TTSSSBCCEEETTTTEEEECCCBCTTSHHHHHCSSCTTCEEEEETTEECSSCCHHHHHHHHHHHCSEECEEEEC
T ss_pred CCcCCEEEeccccCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEE
Confidence 368999998776555578899999999999999 9999999999999999988888777777667888888876
No 104
>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ domain, arhgef11, KIAA0380, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2omj_A 2os6_A
Probab=99.49 E-value=1.6e-12 Score=73.26 Aligned_cols=76 Identities=26% Similarity=0.449 Sum_probs=61.6
Q ss_pred EEEEEEecCCCCccEEEecccCCCCCeEEEEECCCChhhhCCCCCCCEEEEECCEeCCCCCHHHHHHHHhCCCCeEEEEE
Q psy5188 28 EELKLKKLECEAWGFRLTGGRDFGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQI 107 (109)
Q Consensus 28 ~~~~~~~~~~~~~G~~~~~~~~~~~~~~V~~v~~~~~a~~~Gl~~gD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v 107 (109)
+.+.+.+ ...+|||.+.+. .++.|..|.+++||+++||++||.|++|||.++.++.+.+....++ .+..+.+++
T Consensus 10 r~v~l~~-~~~~~G~~l~~~----~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~~~-~g~~v~l~v 83 (93)
T 2dls_A 10 RCVIIQK-DQHGFGFTVSGD----RIVLVQSVRPGGAAMKAGVKEGDRIIKVNGTMVTNSSHLEVVKLIK-SGAYVALTL 83 (93)
T ss_dssp EEEEEEC-SSSSCCEEEECS----SSCEEEEECSSSTTTTTTCCSSCEEEEETTEECSSSCHHHHHHHHT-SSSEEEEEE
T ss_pred EEEEEEe-CCCceeEEEeCC----CCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHhhc-CCCEEEEEE
Confidence 4444433 347899998753 2689999999999999999999999999999999988876665555 578999998
Q ss_pred EC
Q psy5188 108 LR 109 (109)
Q Consensus 108 ~r 109 (109)
.|
T Consensus 84 ~R 85 (93)
T 2dls_A 84 LG 85 (93)
T ss_dssp EC
T ss_pred EE
Confidence 76
No 105
>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A
Probab=99.48 E-value=9.6e-13 Score=82.83 Aligned_cols=81 Identities=25% Similarity=0.466 Sum_probs=68.0
Q ss_pred EEEEEEecCCCCccEEEecccCC-----CCCeEEEEECCCChhhhCC-CCCCCEEEEECCEeCCCCCHHHHHHHHhCCCC
Q psy5188 28 EELKLKKLECEAWGFRLTGGRDF-----GTPLTVLRVTGTSVAEEGG-MEVGDMIVSINGQCTQAMTHVEAQQHIIGSGN 101 (109)
Q Consensus 28 ~~~~~~~~~~~~~G~~~~~~~~~-----~~~~~V~~v~~~~~a~~~G-l~~gD~I~~vng~~v~~~~~~~~~~~~~~~~~ 101 (109)
+++++.+ ...++||++.++.+. ..+++|..|.+++||+++| |++||+|++|||.++.++++......++..+.
T Consensus 7 ~~v~l~~-~~~~lG~~i~~g~~~~~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~ 85 (196)
T 3gsl_A 7 EEITLER-GNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGS 85 (196)
T ss_dssp EEEEEEC-BTTBSSEEEECCTTSCTTSSCCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTSCS
T ss_pred EEEEEEE-CCCCCCEEEEcccCCcccCCCCCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCC
Confidence 3445544 247899999988764 3478999999999999999 99999999999999999999888877887888
Q ss_pred eEEEEEEC
Q psy5188 102 TLTLQILR 109 (109)
Q Consensus 102 ~v~l~v~r 109 (109)
.+.+++.|
T Consensus 86 ~v~l~v~r 93 (196)
T 3gsl_A 86 IVRLYVMR 93 (196)
T ss_dssp EEEEEEEE
T ss_pred cEEEEEEe
Confidence 88888864
No 106
>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain, RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2css_A 1zub_A
Probab=99.48 E-value=6.7e-13 Score=79.39 Aligned_cols=73 Identities=25% Similarity=0.334 Sum_probs=62.6
Q ss_pred CCCccEEEecccCCC---CCeEEEEECCCChhhhCC-CCCCCEEEEECCEeCCCCCHHHHHHHHhCC--CCeEEEEEEC
Q psy5188 37 CEAWGFRLTGGRDFG---TPLTVLRVTGTSVAEEGG-MEVGDMIVSINGQCTQAMTHVEAQQHIIGS--GNTLTLQILR 109 (109)
Q Consensus 37 ~~~~G~~~~~~~~~~---~~~~V~~v~~~~~a~~~G-l~~gD~I~~vng~~v~~~~~~~~~~~~~~~--~~~v~l~v~r 109 (109)
..+|||++.++.+.. .+++|..|.+++||+++| |++||+|++|||.++.+.++.++...++.. +..+.++|.|
T Consensus 47 ~~~lG~~i~gg~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R 125 (131)
T 1wfg_A 47 GAMLGLKVVGGKMTESGRLCAFITKVKKGSLADTVGHLRPGDEVLEWNGRLLQGATFEEVYNIILESKPEPQVELVVSR 125 (131)
T ss_dssp CTTTTEEEEEEEECSSSCEEEEEEEECTTSHHHHTSCCCTTCEEEEETTEECTTCCHHHHHHHHHHTSSSSEEEEEEEE
T ss_pred CCCCCEEEecCccCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhcCCCCEEEEEEEc
Confidence 478999998765442 368899999999999999 999999999999999998888888888764 5889998875
No 107
>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor (LCF), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.2
Probab=99.48 E-value=3.7e-13 Score=79.10 Aligned_cols=82 Identities=29% Similarity=0.430 Sum_probs=65.0
Q ss_pred EEEEEEecCCCCccEEEecccCC-CCCeEEEEECCCChhhhCC-CCCCCEEEEECCEeCCCCCHHHHHHHHhCC-CCeEE
Q psy5188 28 EELKLKKLECEAWGFRLTGGRDF-GTPLTVLRVTGTSVAEEGG-MEVGDMIVSINGQCTQAMTHVEAQQHIIGS-GNTLT 104 (109)
Q Consensus 28 ~~~~~~~~~~~~~G~~~~~~~~~-~~~~~V~~v~~~~~a~~~G-l~~gD~I~~vng~~v~~~~~~~~~~~~~~~-~~~v~ 104 (109)
..+.+.+....+|||++.++.+. ..++.|..|.+++||+++| |++||+|++|||.++.++++.+....++.. +..+.
T Consensus 17 ~~v~l~~~~~~~lG~~i~g~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~~~~~~ 96 (119)
T 1x6d_A 17 HVTILHKEEGAGLGFSLAGGADLENKVITVHRVFPNGLASQEGTIQKGNEVLSINGKSLKGTTHHDALAILRQAREPRQA 96 (119)
T ss_dssp EEEEEECCTTSCCSEEEECCSSSSCSSCEEEEECSSSHHHHHTSSCTTCBCCEETTEECSSCCHHHHHHHHHHTTSSSEE
T ss_pred EEEEEEeCCCCccCEEEeCCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCeEE
Confidence 44455555568999999987653 3579999999999999999 999999999999999988888888777665 44444
Q ss_pred EEEEC
Q psy5188 105 LQILR 109 (109)
Q Consensus 105 l~v~r 109 (109)
+++.|
T Consensus 97 l~v~R 101 (119)
T 1x6d_A 97 VIVTR 101 (119)
T ss_dssp EEEEE
T ss_pred EEEEc
Confidence 55543
No 108
>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa, Na/PI cotransporter C- terminal-associated protein, NAPI-CAP1; NMR {Mus musculus}
Probab=99.48 E-value=5.9e-13 Score=77.72 Aligned_cols=79 Identities=30% Similarity=0.397 Sum_probs=65.2
Q ss_pred EEEEecCCCCccEEEecccCCCCCeEEEEECCCChhhhCCCCCCCEEEEECCEeCCCCCHHHHHHHHhCCCCeEEEEEEC
Q psy5188 30 LKLKKLECEAWGFRLTGGRDFGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQILR 109 (109)
Q Consensus 30 ~~~~~~~~~~~G~~~~~~~~~~~~~~V~~v~~~~~a~~~Gl~~gD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~r 109 (109)
..+.......+||.+...... .++.|..|.+++||+++||++||.|++|||.++.+.++.+....++..+..+.+++.|
T Consensus 17 ~~l~~~~~~~~G~~l~~~~~~-~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v~R 95 (114)
T 2edz_A 17 CKLSKQEGQNYGFFLRIEKDT-DGHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVDKEEHAQVVELVRKSGNSVTLLVLD 95 (114)
T ss_dssp EEEECCTTCCCSCEEECCTTC-CSCEEECCCTTCTTGGGTCCTTCEEEEESSSBCSSSCHHHHHHHHHHTCSEEEEEEEC
T ss_pred EEEeCCCCCcccEEEEEecCC-CCeEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEEEEEE
Confidence 444444457899988765432 3789999999999999999999999999999999987888777777678899999876
No 109
>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission, protein binding; NMR {Rattus norvegicus}
Probab=99.48 E-value=2.4e-13 Score=79.20 Aligned_cols=81 Identities=22% Similarity=0.306 Sum_probs=65.8
Q ss_pred EEEEEecCC-CCccEEEec---ccC---CCCCeEEEEECCCChhhhCC-CCCCCEEEEECCEeCCCCCHHHHHHHHhCCC
Q psy5188 29 ELKLKKLEC-EAWGFRLTG---GRD---FGTPLTVLRVTGTSVAEEGG-MEVGDMIVSINGQCTQAMTHVEAQQHIIGSG 100 (109)
Q Consensus 29 ~~~~~~~~~-~~~G~~~~~---~~~---~~~~~~V~~v~~~~~a~~~G-l~~gD~I~~vng~~v~~~~~~~~~~~~~~~~ 100 (109)
.+++.+... .+|||++.+ +.+ ...+++|..|.+++||+++| |++||.|++|||.++.++++.+....++..+
T Consensus 5 ~~~v~l~k~~~glG~~l~~~~~~~~~~~~~~g~~V~~V~~~s~A~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~g 84 (113)
T 2g5m_B 5 LFPVELEKDSEGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLRNTK 84 (113)
T ss_dssp EEEEECCCCSSCCCCEEEEEECCCCSSSCCEEEEEEECCTTSHHHHHTCSCTTCBEEEETTEECSSCCHHHHHHHHHHSC
T ss_pred EEEEEEEeCCCCCCEEEEecCCCCcCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHhcCC
Confidence 345555444 789999987 332 13478899999999999999 9999999999999999988888877777778
Q ss_pred CeEEEEEEC
Q psy5188 101 NTLTLQILR 109 (109)
Q Consensus 101 ~~v~l~v~r 109 (109)
..+.+++.|
T Consensus 85 ~~v~l~v~R 93 (113)
T 2g5m_B 85 GRVRFMIGR 93 (113)
T ss_dssp SSCEEEEEE
T ss_pred CeEEEEEEe
Confidence 888888865
No 110
>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide binding protein; NMR {Drosophila melanogaster}
Probab=99.48 E-value=2.7e-13 Score=78.36 Aligned_cols=77 Identities=14% Similarity=0.298 Sum_probs=63.2
Q ss_pred EEEEec--CCCCccEEEecccCCCCCeEEEEECCCChhhhCC-CCCCCEEEEECCEeCCCCCHHHHHHHHhCCCCeEEEE
Q psy5188 30 LKLKKL--ECEAWGFRLTGGRDFGTPLTVLRVTGTSVAEEGG-MEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQ 106 (109)
Q Consensus 30 ~~~~~~--~~~~~G~~~~~~~~~~~~~~V~~v~~~~~a~~~G-l~~gD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~ 106 (109)
+++.+. ...++|+.+.+. ..++.|..|.+++||+++| |++||.|++|||.++.+..+.+....++..++.+.++
T Consensus 4 ~~v~L~k~~~~glG~~i~~~---~~gv~V~~V~~gspA~~aG~L~~GD~Il~Ing~~v~~~~~~~~~~~~~~~~~~v~l~ 80 (106)
T 2la8_A 4 FNVDLMKKAGKELGLSLSPN---EIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYALFKGANGKVSME 80 (106)
T ss_dssp EEEEECCBSSSTTCCEEEEC---SSSEEEEECCTTSCHHHHTTCCTTCEEEEESSCBCSSSCHHHHHHHHHSCBSCEEEE
T ss_pred EEEEEEeCCCCccCEEEEeC---CCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeEEEE
Confidence 444443 447899988652 2378999999999999999 9999999999999999988888777777777788888
Q ss_pred EEC
Q psy5188 107 ILR 109 (109)
Q Consensus 107 v~r 109 (109)
+.|
T Consensus 81 v~R 83 (106)
T 2la8_A 81 VTR 83 (106)
T ss_dssp EEE
T ss_pred EEe
Confidence 865
No 111
>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ domain, PDZ2, acetylation, cell projection, membrane, polymorphism; NMR {Homo sapiens}
Probab=99.48 E-value=5.5e-13 Score=75.80 Aligned_cols=73 Identities=26% Similarity=0.359 Sum_probs=59.3
Q ss_pred CCCCccEEEecccCCCCCeEEEEECCCChhhhCCCCCCCEEEEECCEeCCCCCHHHHHHHHhCC-CCeEEEEEEC
Q psy5188 36 ECEAWGFRLTGGRDFGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGS-GNTLTLQILR 109 (109)
Q Consensus 36 ~~~~~G~~~~~~~~~~~~~~V~~v~~~~~a~~~Gl~~gD~I~~vng~~v~~~~~~~~~~~~~~~-~~~v~l~v~r 109 (109)
...++||.+.++.+. .++.|..|.+++||+++||++||.|++|||.++.++++.+....++.. +..+.+++.|
T Consensus 18 ~~~g~G~~~~~~~~~-~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~~~~l~v~R 91 (98)
T 2jxo_A 18 GPSGYGFNLHSDKSK-PGQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQHGDVVSAIRAGGDETKLLVVDR 91 (98)
T ss_dssp TTTCCCEEEECCCSS-SCEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHTTTTEEEEEECCH
T ss_pred CCCcccEEEEecCCC-CCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCcEEEEEEEC
Confidence 347899999876533 378999999999999999999999999999999987788877777765 4455566643
No 112
>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus}
Probab=99.48 E-value=8.4e-14 Score=91.95 Aligned_cols=82 Identities=26% Similarity=0.460 Sum_probs=70.4
Q ss_pred EEEEEEecCCCCccEEEecccCCCCCeEEEEECCCChhhh-CCCCCCCEEEEECCEeCCCCCHHHHHHHHhCCCCeEEEE
Q psy5188 28 EELKLKKLECEAWGFRLTGGRDFGTPLTVLRVTGTSVAEE-GGMEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQ 106 (109)
Q Consensus 28 ~~~~~~~~~~~~~G~~~~~~~~~~~~~~V~~v~~~~~a~~-~Gl~~gD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~ 106 (109)
+.+.+.+....+|||++.++.+...+++|..|.+++||++ +||++||+|++|||.++.++++.++...++..+..+.|+
T Consensus 79 r~V~L~k~~~~glGf~I~gg~d~~~gi~V~~V~~gspA~~~aGL~~GD~Il~VNG~~v~~~t~~e~v~~l~~~g~~V~L~ 158 (263)
T 1z87_A 79 RRVTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLE 158 (263)
T ss_dssp EEECCCTTTTCCCCCEEEEETTTTEEEEEEECCTTSHHHHCTTCCSSCEEEEESSCBCTTSCHHHHHHHHHHCCSCCCEE
T ss_pred EEEEEEeCCCCCEeEEEeeccCCCCCEEEEEECCCCHHHHhCCCCCCCEEEEECCEECCCcCHHHHHHHHhcCCCeEEEE
Confidence 4455554445899999998876666899999999999999 689999999999999999999999998888878888898
Q ss_pred EEC
Q psy5188 107 ILR 109 (109)
Q Consensus 107 v~r 109 (109)
|.|
T Consensus 159 V~R 161 (263)
T 1z87_A 159 VKY 161 (263)
T ss_dssp EEC
T ss_pred EEe
Confidence 876
No 113
>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide binding protein; 1.54A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A
Probab=99.47 E-value=6.6e-13 Score=78.00 Aligned_cols=80 Identities=23% Similarity=0.377 Sum_probs=65.2
Q ss_pred EEEEEEecCCCCccEEEecccCCCCCeEEEEECCCChhhhCC-CCCCCEEEEECCEeCCCCCHHHHHHHHhCCCCeEEEE
Q psy5188 28 EELKLKKLECEAWGFRLTGGRDFGTPLTVLRVTGTSVAEEGG-MEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQ 106 (109)
Q Consensus 28 ~~~~~~~~~~~~~G~~~~~~~~~~~~~~V~~v~~~~~a~~~G-l~~gD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~ 106 (109)
..+.+.+ ...++||++.++.+. .++.|..|.+++||+++| |++||.|++|||.++.++++......++..+..+.++
T Consensus 16 ~~v~l~k-~~~glG~~l~~~~~~-~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~ 93 (119)
T 1tp5_A 16 RRIVIHR-GSTGLGFNIVGGEDG-EGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTII 93 (119)
T ss_dssp EEEEEEC-TTSCCCEEEEECGGG-CCEEEEEECTTSHHHHHSCCCTTEEEEEETTEECTTCCHHHHHHHHHTSCSEEEEE
T ss_pred EEEEEEE-CCCCccEEEecCCCC-CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEE
Confidence 4445544 336799999876532 479999999999999999 9999999999999999998877777777778888888
Q ss_pred EEC
Q psy5188 107 ILR 109 (109)
Q Consensus 107 v~r 109 (109)
+.|
T Consensus 94 v~r 96 (119)
T 1tp5_A 94 AQY 96 (119)
T ss_dssp EEE
T ss_pred EEE
Confidence 764
No 114
>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3, microtubule associated serine/threonine kinase 3, PDZ domain, structural genomics; 1.20A {Homo sapiens} PDB: 2w7r_A 2kqf_A 2kyl_A 3ps4_A
Probab=99.47 E-value=3.5e-13 Score=76.76 Aligned_cols=74 Identities=28% Similarity=0.492 Sum_probs=61.8
Q ss_pred CCCCccEEEecccCCC-------CCeEEEEECCCChhhhCCCCCCCEEEEECCEeCCCCCHHHHHHHHhCCCCeEEEEEE
Q psy5188 36 ECEAWGFRLTGGRDFG-------TPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQIL 108 (109)
Q Consensus 36 ~~~~~G~~~~~~~~~~-------~~~~V~~v~~~~~a~~~Gl~~gD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~ 108 (109)
+..+|||++....... .++.|..+.+++||+.+||++||.|+++||.++.++++.+....++..+..+.+++.
T Consensus 11 ~~~~~Gf~l~~~~~~~~~~~~~~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v~ 90 (99)
T 3khf_A 11 SGKKYGFSLRAIRVYMGDSDVYTVHHVVWSVEDGSPAQEAGLRAGDLITHINGESVLGLVHMDVVELLLKSGNKISLRTT 90 (99)
T ss_dssp -CCCCCEEEEEEEEESSSSSCEEEEEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHHSCSEEEEEEE
T ss_pred CCCCCcEEEEecccccCccccccCCeEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCEEEEEEE
Confidence 4589999987543211 145789999999999999999999999999999988888888888878899999987
Q ss_pred C
Q psy5188 109 R 109 (109)
Q Consensus 109 r 109 (109)
|
T Consensus 91 r 91 (99)
T 3khf_A 91 A 91 (99)
T ss_dssp C
T ss_pred E
Confidence 6
No 115
>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=99.47 E-value=3.3e-13 Score=78.93 Aligned_cols=73 Identities=23% Similarity=0.388 Sum_probs=63.4
Q ss_pred CCCccEEEecccCCC-CCeEEEEECCCChhhhCC-CCCCCEEEEECCEeCCCCCHHHHHHHHhCCCCeEEEEEEC
Q psy5188 37 CEAWGFRLTGGRDFG-TPLTVLRVTGTSVAEEGG-MEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQILR 109 (109)
Q Consensus 37 ~~~~G~~~~~~~~~~-~~~~V~~v~~~~~a~~~G-l~~gD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~r 109 (109)
..+|||.+.++.+.. .++.|..|.+++||+++| |++||+|++|||.++.++++.+....++..+..+.++|.|
T Consensus 27 ~~glG~~l~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~~v~l~v~R 101 (116)
T 2dm8_A 27 RSGLGLSIVGGKDTPLNAIVIHEVYEEGAAARDGRLWAGDQILEVNGVDLRNSSHEEAITALRQTPQKVRLVVYR 101 (116)
T ss_dssp SSCCCCCCBCCTTSSCSSEECCCCCSSSHHHHHTCCCTTCEEEEETTEECSSSCHHHHHHHHHTCCSEEEEEEEC
T ss_pred CCcccEEEeCCCCCCcCCEEEEEECCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEEe
Confidence 478999998766543 478999999999999999 9999999999999999988888887787777888898876
No 116
>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=99.47 E-value=5.2e-13 Score=79.49 Aligned_cols=82 Identities=22% Similarity=0.355 Sum_probs=67.1
Q ss_pred EEEEEEe--cCCCCccEEEecccC-----CCCCeEEEEECCCChhhhCC-CCCCCEEEEECCEeCCCCCHHHHHHHHhCC
Q psy5188 28 EELKLKK--LECEAWGFRLTGGRD-----FGTPLTVLRVTGTSVAEEGG-MEVGDMIVSINGQCTQAMTHVEAQQHIIGS 99 (109)
Q Consensus 28 ~~~~~~~--~~~~~~G~~~~~~~~-----~~~~~~V~~v~~~~~a~~~G-l~~gD~I~~vng~~v~~~~~~~~~~~~~~~ 99 (109)
+.+.+.+ ....+|||++.++.+ ...+++|..|.+++||+++| |++||.|++|||.++.++++.+....++..
T Consensus 15 ~~~~v~l~~~~~~~lG~~i~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~l~~~ 94 (129)
T 2dmz_A 15 ETYNVELVRKDGQSLGIRIVGYVGTSHTGEASGIYVKSVIPGSAAYHNGHIQVNDKIVAVDGVNIQGFANHDVVEVLRNA 94 (129)
T ss_dssp EEEEEEECCCTTCCCCEEEEEECCCSSSCCCCEEEEEEECTTSHHHHHTCCCSSCBEEEETTBCCTTCCHHHHHHHHHHC
T ss_pred cEEEEEEEeCCCCCcCEEEEeecCCcccCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence 4455555 345899999987543 23468899999999999999 999999999999999998888888877777
Q ss_pred CCeEEEEEEC
Q psy5188 100 GNTLTLQILR 109 (109)
Q Consensus 100 ~~~v~l~v~r 109 (109)
+..+.+++.|
T Consensus 95 ~~~v~l~v~R 104 (129)
T 2dmz_A 95 GQVVHLTLVR 104 (129)
T ss_dssp CSSEEEEEEE
T ss_pred CCeEEEEEEe
Confidence 8888888865
No 117
>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics, PDZ domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB: 2koh_A 2k1z_A 2k20_A
Probab=99.47 E-value=1.3e-13 Score=82.02 Aligned_cols=82 Identities=20% Similarity=0.302 Sum_probs=67.9
Q ss_pred EEEEEEec--CCCCccEEEecccCC----CCCeEEEEECCCChhhhCC-CCCCCEEEEECCEeCCCCCHHHHHHHHhCC-
Q psy5188 28 EELKLKKL--ECEAWGFRLTGGRDF----GTPLTVLRVTGTSVAEEGG-MEVGDMIVSINGQCTQAMTHVEAQQHIIGS- 99 (109)
Q Consensus 28 ~~~~~~~~--~~~~~G~~~~~~~~~----~~~~~V~~v~~~~~a~~~G-l~~gD~I~~vng~~v~~~~~~~~~~~~~~~- 99 (109)
..+++.+. ...+|||++.++.+. ..+++|..|.+++||+++| |++||+|++|||.++.++++.++...++..
T Consensus 25 ~~~~v~l~k~~~~glG~~i~~~~~~~~~~~~gi~V~~V~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~ 104 (127)
T 1wg6_A 25 LTLEIPLNDSGSAGLGVSLKGNKSRETGTDLGIFIKSIIHGGAAFKDGRLRMNDQLIAVNGETLLGKSNHEAMETLRRSM 104 (127)
T ss_dssp EEEEEECSSSTTTCCCCEEEEEEETTTTEEEEEEEEECCSSSSTHHHHTSCSCCBEEEETTEESTTSCHHHHHHHHHHHH
T ss_pred eEEEEEEeeCCCCccCeEEecccCCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHHhh
Confidence 45666654 348999999876543 2368899999999999999 999999999999999999988888888754
Q ss_pred ------CCeEEEEEEC
Q psy5188 100 ------GNTLTLQILR 109 (109)
Q Consensus 100 ------~~~v~l~v~r 109 (109)
+..+.++|.|
T Consensus 105 ~~~g~~~~~v~l~v~R 120 (127)
T 1wg6_A 105 SMEGNIRGMIQLVILR 120 (127)
T ss_dssp HHHHHHTCEEEEEEEE
T ss_pred ccccCCCCEEEEEEEe
Confidence 6899998875
No 118
>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3; neuron-specific X11L2 protein, neuronal MUNC18-1-interacting protein 3, MINT-3; NMR {Homo sapiens}
Probab=99.47 E-value=1.9e-12 Score=74.07 Aligned_cols=82 Identities=23% Similarity=0.326 Sum_probs=65.6
Q ss_pred EEEEEEecCCCCccEEEecccC--CCCCeEEEEECCCChhhh-CCCCCCCEEEEECCEeCCCCCHHHHHHHHhC--CCCe
Q psy5188 28 EELKLKKLECEAWGFRLTGGRD--FGTPLTVLRVTGTSVAEE-GGMEVGDMIVSINGQCTQAMTHVEAQQHIIG--SGNT 102 (109)
Q Consensus 28 ~~~~~~~~~~~~~G~~~~~~~~--~~~~~~V~~v~~~~~a~~-~Gl~~gD~I~~vng~~v~~~~~~~~~~~~~~--~~~~ 102 (109)
+.+.+.+....++||++..... ...++.|..+.+++||++ +||++||+|++|||.++.+.++.+....++. .+..
T Consensus 11 ~~v~l~k~~g~~lG~~i~~~~~~~~~~~~~V~~V~~~spA~~~ggl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~~g~~ 90 (101)
T 2yt7_A 11 REVHLEKRRGEGLGVALVESGWGSLLPTAVIANLLHGGPAERSGALSIGDRLTAINGTSLVGLPLAACQAAVRETKSQTS 90 (101)
T ss_dssp EEEEEECCTTCCCCEEEEECCCSSSSCCEEEEEECTTSTTGGGSSCCTTCEEEEESSCBCTTSCHHHHHHHHHHTTTSSE
T ss_pred EEEEEEeCCCCccCEEEEeCCCCCCccCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCe
Confidence 5566666555799999864221 123589999999999999 5599999999999999988888888888876 6789
Q ss_pred EEEEEEC
Q psy5188 103 LTLQILR 109 (109)
Q Consensus 103 v~l~v~r 109 (109)
+.+++.|
T Consensus 91 v~l~v~R 97 (101)
T 2yt7_A 91 VTLSIVH 97 (101)
T ss_dssp EEEEECC
T ss_pred EEEEEEe
Confidence 9999876
No 119
>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ, cell junction, cell adhesion, signaling protein, nucleotide exchange factor; 1.30A {Homo sapiens} PDB: 3kze_A
Probab=99.47 E-value=1.6e-12 Score=73.49 Aligned_cols=79 Identities=23% Similarity=0.371 Sum_probs=60.3
Q ss_pred EEEEEEecCC--CCccEEEecccC-CCCCeEEEEECCCChhhhCCCCCCCEEEEECCEeCCCCCHHHHHHHHhCCCCeEE
Q psy5188 28 EELKLKKLEC--EAWGFRLTGGRD-FGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLT 104 (109)
Q Consensus 28 ~~~~~~~~~~--~~~G~~~~~~~~-~~~~~~V~~v~~~~~a~~~Gl~~gD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~ 104 (109)
+.+++.+... .++||++..... ...++.|..+.+++||+++|+++||.|++|||.++.++++.+....+++ ..+.
T Consensus 8 ~~v~i~k~~~~~~~~Gf~v~~~~~~~~~g~~V~~V~~~spA~~aGL~~GD~Il~vng~~v~~~~~~~l~~~l~~--~~l~ 85 (94)
T 3kzd_A 8 HSIHIEKSDTAADTYGFSLSSVEEDGIRRLYVNSVKETGLASKKGLKAGDEILEINNRAADALNSSMLKDFLSQ--PSLG 85 (94)
T ss_dssp EEEEEEC------CCSEEEEEECSSSSCEEEEEEECTTSHHHHTTCCTTCEEEEETTEEGGGCCHHHHHHHHHS--SEEE
T ss_pred eEEEEEeCCCCcCCcCEEEEecCCCCcCCeEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhC--CeEE
Confidence 4455555443 589999976432 2346889999999999999999999999999999999888888777775 4666
Q ss_pred EEEE
Q psy5188 105 LQIL 108 (109)
Q Consensus 105 l~v~ 108 (109)
++|.
T Consensus 86 ltV~ 89 (94)
T 3kzd_A 86 LLVR 89 (94)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6653
No 120
>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding, protein-binding, RHOB, nitration, cytoplasm, PDZ domain, CAsp8; 1.82A {Homo sapiens}
Probab=99.47 E-value=1.5e-12 Score=75.63 Aligned_cols=77 Identities=23% Similarity=0.339 Sum_probs=61.4
Q ss_pred EEEEEEecCCCCccEEEecccCCCCCeEEEEECCCChhhhCCCCCCCEEEEECCEeCCCCCHHHHHHHHhCCCC-eEEEE
Q psy5188 28 EELKLKKLECEAWGFRLTGGRDFGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGSGN-TLTLQ 106 (109)
Q Consensus 28 ~~~~~~~~~~~~~G~~~~~~~~~~~~~~V~~v~~~~~a~~~Gl~~gD~I~~vng~~v~~~~~~~~~~~~~~~~~-~v~l~ 106 (109)
+.+.+.+ ++.++||.+.+. .++.|..+.+++||+++||++||.|++|||.++.++++.+....++..++ .+.++
T Consensus 25 r~v~l~k-~~~~~G~~l~~~----~~v~V~~V~~gspA~~AGL~~GD~Il~VnG~~v~~~~~~dv~~~i~~~~~~~v~l~ 99 (109)
T 2vsv_A 25 RSIRFTA-EEGDLGFTLRGN----APVQVHFLDPYCSASVAGAREGDYIVSIQLVDCKWLTLSEVMKLLKSFGEDEIEMK 99 (109)
T ss_dssp EEEEECC-GGGCCCEEEESS----SSCEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHTTTTSCEEEE
T ss_pred EEEEEEe-CCCceeEEEeCC----CCeEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCeEEEE
Confidence 3344443 347899988643 26789999999999999999999999999999998888887777776644 48888
Q ss_pred EEC
Q psy5188 107 ILR 109 (109)
Q Consensus 107 v~r 109 (109)
|.|
T Consensus 100 V~~ 102 (109)
T 2vsv_A 100 VVS 102 (109)
T ss_dssp EES
T ss_pred EEE
Confidence 765
No 121
>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase binding domain, signaling protein; HET: GNP; 2.10A {Mus musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A 2lc7_A 1rzx_A
Probab=99.46 E-value=3.7e-13 Score=80.18 Aligned_cols=82 Identities=17% Similarity=0.312 Sum_probs=67.5
Q ss_pred EEEEEEecC-CCCccEEEecccCC---------CCCeEEEEECCCChhhhCC-CCCCCEEEEECCEeCCCCCHHHHHHHH
Q psy5188 28 EELKLKKLE-CEAWGFRLTGGRDF---------GTPLTVLRVTGTSVAEEGG-MEVGDMIVSINGQCTQAMTHVEAQQHI 96 (109)
Q Consensus 28 ~~~~~~~~~-~~~~G~~~~~~~~~---------~~~~~V~~v~~~~~a~~~G-l~~gD~I~~vng~~v~~~~~~~~~~~~ 96 (109)
+.+.+.+.+ ..+|||++.++.+. ..+++|..|.+++||+++| |++||.|++|||.++.+.++.+....+
T Consensus 31 r~v~l~k~~~~~~lG~~i~~~~~~~~~~~g~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~l 110 (128)
T 1nf3_C 31 RRVRLCKYGTEKPLGFYIRDGSSVRVTPHGLEKVPGIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMM 110 (128)
T ss_dssp EEEEECCSSTTSCCCEEEEEEEEEEEETTEEEEEEEEEEEEECTTCHHHHHTCCCTTCEEEEETTEESTTCCHHHHHHHH
T ss_pred EEEEEEECCCCCCccEEEEccccccccccccCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence 556666554 37899999876431 1358899999999999999 999999999999999988899888888
Q ss_pred hCCCCeEEEEEEC
Q psy5188 97 IGSGNTLTLQILR 109 (109)
Q Consensus 97 ~~~~~~v~l~v~r 109 (109)
+..+..+.+++.|
T Consensus 111 ~~~~~~v~l~v~r 123 (128)
T 1nf3_C 111 IANSRNLIITVRP 123 (128)
T ss_dssp HHTTTSEEEEEEC
T ss_pred HcCCCeEEEEEEE
Confidence 7777789998876
No 122
>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1; copper chaperone for superoxide dismutase, neuronal adaptor, protein transport; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.46 E-value=2.3e-12 Score=72.42 Aligned_cols=73 Identities=22% Similarity=0.425 Sum_probs=60.1
Q ss_pred EEEEecC-CCCccEEEecccCCCCCeEEEEECCCChhhhCCCCCCCEEEEECCEeCCCCCHHHHHHHHhCCCCeEEEEEE
Q psy5188 30 LKLKKLE-CEAWGFRLTGGRDFGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQIL 108 (109)
Q Consensus 30 ~~~~~~~-~~~~G~~~~~~~~~~~~~~V~~v~~~~~a~~~Gl~~gD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~ 108 (109)
+.+.... ..++||.+.++ .|..|.+++||+++||++||.|++|||.++.+.++.+....++..+..+.+++.
T Consensus 15 ~~i~~~~~~~~lG~~~~~G-------~V~~V~~~spA~~aGL~~GD~Il~Ing~~v~~~~~~~~~~~l~~~g~~v~l~v~ 87 (90)
T 1y7n_A 15 VLIRRPDLRYQLGFSVQNG-------IICSLMRGGIAERGGVRVGHRIIEINGQSVVATPHEKIVHILSNAVGEIHMKTM 87 (90)
T ss_dssp EEEEESSTTSCCCEEEETT-------EEEEECTTSHHHHHTCCSSCEEEEETTEECTTSCHHHHHHHHHHCCEEEEEEEE
T ss_pred EEEEeCCCccccCeEecCC-------EEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEE
Confidence 3443333 37899988543 789999999999999999999999999999888888888888777888888876
Q ss_pred C
Q psy5188 109 R 109 (109)
Q Consensus 109 r 109 (109)
+
T Consensus 88 p 88 (90)
T 1y7n_A 88 P 88 (90)
T ss_dssp C
T ss_pred E
Confidence 4
No 123
>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; structural genomi consortium, SGC, ATP-binding, cell junction; 1.60A {Homo sapiens}
Probab=99.46 E-value=2.2e-12 Score=71.93 Aligned_cols=77 Identities=23% Similarity=0.392 Sum_probs=58.1
Q ss_pred EEEEecCC-CCccEEEecccCCCCCeEEEEECCCChhhhCCCCCCCEEEEECCEeCCCCCHHHHHHHHhC--CCCeEEEE
Q psy5188 30 LKLKKLEC-EAWGFRLTGGRDFGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIG--SGNTLTLQ 106 (109)
Q Consensus 30 ~~~~~~~~-~~~G~~~~~~~~~~~~~~V~~v~~~~~a~~~Gl~~gD~I~~vng~~v~~~~~~~~~~~~~~--~~~~v~l~ 106 (109)
+++.+... .++||++.+..+. .++.|..+ +++||+ +||++||.|+++||.++.++++.+....++. .+..+.++
T Consensus 5 ~~v~l~k~~~g~G~~~~~~~~~-~~~~v~~v-~~spA~-aGl~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~g~~v~l~ 81 (88)
T 3bpu_A 5 ITVHIVKGPMGFGFTIADSPGG-GGQRVKQI-VDSPRS-RGLKEGDLIVEVNKKNVQALTHNQVVDMLVESPKGSEVTLL 81 (88)
T ss_dssp EEEEEECBTTBSSCEEEECTTS-SSEEEEEC-CC--CC-TTCCTTCEEEEETTEECTTSCHHHHHHHHHTSCTTCEEEEE
T ss_pred EEEEEEcCCCceeEEEEecCCC-CcEEEEEe-cCChhH-hCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCCCEEEEE
Confidence 34444343 7899999865432 36777776 999999 9999999999999999999887777777764 47888888
Q ss_pred EEC
Q psy5188 107 ILR 109 (109)
Q Consensus 107 v~r 109 (109)
+.|
T Consensus 82 v~R 84 (88)
T 3bpu_A 82 VQR 84 (88)
T ss_dssp EEE
T ss_pred EEe
Confidence 865
No 124
>2eei_A PDZ domain-containing protein 1; regulatory factor, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.46 E-value=3.7e-13 Score=77.53 Aligned_cols=80 Identities=21% Similarity=0.340 Sum_probs=64.9
Q ss_pred EEEEEEecCCCCccEEEecccCCCCCeEEEEECCCChhhhCCCCCCCEEEEECCEeCCCCCHHHHHHHHhCCCCeEEEEE
Q psy5188 28 EELKLKKLECEAWGFRLTGGRDFGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQI 107 (109)
Q Consensus 28 ~~~~~~~~~~~~~G~~~~~~~~~~~~~~V~~v~~~~~a~~~Gl~~gD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v 107 (109)
+.+.+.+ ...++||.+.+... ..+++|..+.+++||+++||++||.|++|||.++.++++.+....++..+..+.+++
T Consensus 10 r~v~l~k-~~~~~G~~l~~~~~-~~g~~V~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v 87 (106)
T 2eei_A 10 RLCYLVK-EGGSYGFSLKTVQG-KKGVYMTDITPQGVAMRAGVLADDHLIEVNGENVEDASHEEVVEKVKKSGSRVMFLL 87 (106)
T ss_dssp EEEEEEC-CSSSCSCCEECCSS-CCSCEECCCCTTSHHHHHTCCSSEEEEEETTEECTTCCHHHHHHHHHHHCSEEEEEE
T ss_pred EEEEEEE-CCCCCCEEEEeccC-CCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEE
Confidence 4455554 45889999976543 347889999999999999999999999999999998888887777766677888887
Q ss_pred EC
Q psy5188 108 LR 109 (109)
Q Consensus 108 ~r 109 (109)
.|
T Consensus 88 ~r 89 (106)
T 2eei_A 88 VD 89 (106)
T ss_dssp CC
T ss_pred Ec
Confidence 64
No 125
>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.46 E-value=5.6e-13 Score=78.37 Aligned_cols=74 Identities=27% Similarity=0.333 Sum_probs=62.0
Q ss_pred CCCCccEEEecccCCC-CCeEEEEECCCChhhhC-CCCCCCEEEEECCEeCCCCCHHHHHHHHhC----CCCeEEEEEEC
Q psy5188 36 ECEAWGFRLTGGRDFG-TPLTVLRVTGTSVAEEG-GMEVGDMIVSINGQCTQAMTHVEAQQHIIG----SGNTLTLQILR 109 (109)
Q Consensus 36 ~~~~~G~~~~~~~~~~-~~~~V~~v~~~~~a~~~-Gl~~gD~I~~vng~~v~~~~~~~~~~~~~~----~~~~v~l~v~r 109 (109)
...++||++.++.+.. .++.|..|.+++||+++ ||++||+|++|||.++.++++.++...++. .+..+.+++.|
T Consensus 26 ~~~glG~~i~gg~~~~~~~i~I~~V~~gspA~~aggL~~GD~Il~Ing~~v~~~~~~~~~~~l~~~~~~~g~~v~l~v~r 105 (118)
T 1v6b_A 26 KEGSLDLALEGGVDSPVGKVVVSAVYEGGAAERHGGVVKGDEIMAINGKIVTDYTLAEAEAALQKAWNQGGDWIDLVVAV 105 (118)
T ss_dssp SCSCCCCEEEEBTTSSSCSEEEEECCTTSHHHHHCSSCTTCEEEEESSCBCTTCBHHHHHHHHHHHHHHTCSEEEEEEEC
T ss_pred CCCccCEEEEcccCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHHhhhcCCCeEEEEEEe
Confidence 3468999998876543 45899999999999999 799999999999999999888877776654 27889998876
No 126
>3gge_A PDZ domain-containing protein GIPC2; structural genomics, structural genomics consort protein binding; 2.60A {Homo sapiens}
Probab=99.45 E-value=4.7e-12 Score=71.52 Aligned_cols=78 Identities=21% Similarity=0.308 Sum_probs=64.4
Q ss_pred EEEEEEecCCCCccEEEecccCCCCCeEEEEECCCChhhhCC-CCCCCEEEEECCEeCCCCCHHHHHHHHhCC--CCeEE
Q psy5188 28 EELKLKKLECEAWGFRLTGGRDFGTPLTVLRVTGTSVAEEGG-MEVGDMIVSINGQCTQAMTHVEAQQHIIGS--GNTLT 104 (109)
Q Consensus 28 ~~~~~~~~~~~~~G~~~~~~~~~~~~~~V~~v~~~~~a~~~G-l~~gD~I~~vng~~v~~~~~~~~~~~~~~~--~~~v~ 104 (109)
+++.+.+ ...++|+++.++. ...++|..+.++++|+++| |++||.|++|||..+.++++.++..++++. +..++
T Consensus 7 k~V~l~K-~~~~LG~tI~~~g--~g~~~I~rI~~gg~a~r~g~L~vGD~I~~VNG~~v~g~~h~evv~lLk~~~~g~~~~ 83 (95)
T 3gge_A 7 KEVNVYK-SEDSLGLTITDNG--VGYAFIKRIKDGGVIDSVKTICVGDHIESINGENIVGWRHYDVAKKLKELKKEELFT 83 (95)
T ss_dssp EEEEEEC-CSSCCCEEEECSS--SSCCEEEEECTTSHHHHCTTCCTTCEEEEETTEECTTCCHHHHHHHHHHSCTTCEEE
T ss_pred EEEEEEE-CCCCceEEEEcCC--CCcEEEEEEcCCChHHhcCCCCCCCEEEEECCEEccCCCHHHHHHHHHhCCCCCEEE
Confidence 5556655 3389999998542 2357899999999999999 999999999999999999999999999874 56777
Q ss_pred EEEE
Q psy5188 105 LQIL 108 (109)
Q Consensus 105 l~v~ 108 (109)
|.+.
T Consensus 84 L~lv 87 (95)
T 3gge_A 84 MKLI 87 (95)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7654
No 127
>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog; PDZ domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.45 E-value=1.7e-12 Score=76.63 Aligned_cols=82 Identities=28% Similarity=0.398 Sum_probs=65.2
Q ss_pred EEEEEEecC--CCCccEEEeccc----CCCCCeEEEEECCCChhhhCC-CCCCCEEEEECCEeCCCCCHHHHHHHHhCC-
Q psy5188 28 EELKLKKLE--CEAWGFRLTGGR----DFGTPLTVLRVTGTSVAEEGG-MEVGDMIVSINGQCTQAMTHVEAQQHIIGS- 99 (109)
Q Consensus 28 ~~~~~~~~~--~~~~G~~~~~~~----~~~~~~~V~~v~~~~~a~~~G-l~~gD~I~~vng~~v~~~~~~~~~~~~~~~- 99 (109)
+.+++.+.. ..+|||.+.++. +...++.|..|.+++||+++| |++||+|++|||.++.++++.+....++..
T Consensus 15 ~~~~v~l~k~~~~glG~~l~~~~~~~~~~~~~~~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~ 94 (122)
T 1v5q_A 15 ETTEVVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDSS 94 (122)
T ss_dssp EEEEEEECCCSSSSSCEEEECCSCCSSSCSSCCEEEEECTTSHHHHSCCCCTTCCEEEETTEESSSSCHHHHHHHHHHHT
T ss_pred eeEEEEEEeCCCCccCEEEecccccCCcCCCCcEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence 344555444 389999998762 223468999999999999999 999999999999999987788877777653
Q ss_pred -CCeEEEEEEC
Q psy5188 100 -GNTLTLQILR 109 (109)
Q Consensus 100 -~~~v~l~v~r 109 (109)
+..+.+++.|
T Consensus 95 ~g~~v~l~v~R 105 (122)
T 1v5q_A 95 ITSKVTLEIEF 105 (122)
T ss_dssp TTTCEEEEEEE
T ss_pred CCCeEEEEEEE
Confidence 6788898875
No 128
>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion; 1.99A {Homo sapiens} PDB: 3shu_A
Probab=99.45 E-value=2e-12 Score=76.66 Aligned_cols=73 Identities=27% Similarity=0.398 Sum_probs=61.3
Q ss_pred cCCCCccEEEecccCCCCCeEEEEECCCChhhhCCCCCCCEEEEECCEeCCCCCHHHHHHHHh--CCCCeEEEEEEC
Q psy5188 35 LECEAWGFRLTGGRDFGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHII--GSGNTLTLQILR 109 (109)
Q Consensus 35 ~~~~~~G~~~~~~~~~~~~~~V~~v~~~~~a~~~Gl~~gD~I~~vng~~v~~~~~~~~~~~~~--~~~~~v~l~v~r 109 (109)
....++|+.+.++.+ .++.|..|.+++||+++||++||+|++|||.++.++++.+....+. ..+..+.+++.|
T Consensus 36 ~~~~~lG~~l~~~~~--~gv~V~~V~~gspA~~aGL~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R 110 (124)
T 3tsv_A 36 RKGDSVGLRLAGGND--VGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTILAQK 110 (124)
T ss_dssp ECSSCCCEEEEECTT--SCEEEEEECTTCHHHHTTCCTTEEEEEETTEECSSCCHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred CCCCceeEEEecCCC--CCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhcCCCCEEEEEEEE
Confidence 345789999886544 4799999999999999999999999999999999987777777665 467888888865
No 129
>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=99.45 E-value=1.2e-12 Score=76.03 Aligned_cols=79 Identities=28% Similarity=0.526 Sum_probs=64.4
Q ss_pred EEEEEEecCCCCccEEEecccCCCCCeEEEEECCCChhhhCC-CCCCCEEEEECCEeCCCCCHHHHHHHHhCCCCeEEEE
Q psy5188 28 EELKLKKLECEAWGFRLTGGRDFGTPLTVLRVTGTSVAEEGG-MEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQ 106 (109)
Q Consensus 28 ~~~~~~~~~~~~~G~~~~~~~~~~~~~~V~~v~~~~~a~~~G-l~~gD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~ 106 (109)
+.+.+.+ ...++||.+.++.+ .+++|..|.+++||+++| |++||+|++|||.++.++++.+....++..+..+.++
T Consensus 17 ~~v~l~~-~~~~lG~~l~~~~~--~g~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~g~~v~l~ 93 (111)
T 2dlu_A 17 EEVELIN-DGSGLGFGIVGGKT--SGVVVRTIVPGGLADRDGRLQTGDHILKIGGTNVQGMTSEQVAQVLRNCGNSVRML 93 (111)
T ss_dssp EEEEEEC-CSSCCCEEEECCSS--SSBEEEEECTTSSHHHHTCCCSSCEEEEESSCCCTTSCHHHHHHHHHHHCSEEEEE
T ss_pred EEEEEEe-CCCccCEEEeccCC--CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEE
Confidence 3344433 33789999987653 369999999999999999 9999999999999999888888777777667888888
Q ss_pred EEC
Q psy5188 107 ILR 109 (109)
Q Consensus 107 v~r 109 (109)
+.|
T Consensus 94 v~R 96 (111)
T 2dlu_A 94 VAR 96 (111)
T ss_dssp EEE
T ss_pred EEe
Confidence 865
No 130
>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.44 E-value=4.3e-13 Score=76.66 Aligned_cols=80 Identities=31% Similarity=0.538 Sum_probs=62.1
Q ss_pred EEEEEecC-CCCccEEEecccCCCCCeEEEEECCCChhhhCCCCCCCEEEEECCEeCCCCCHHHHHHHHhCCCCeEEEEE
Q psy5188 29 ELKLKKLE-CEAWGFRLTGGRDFGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQI 107 (109)
Q Consensus 29 ~~~~~~~~-~~~~G~~~~~~~~~~~~~~V~~v~~~~~a~~~Gl~~gD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v 107 (109)
.+.+.+.+ ..+|||.+.+..+...++.|..|.+++||+.+||++||+|++|||.++.++.+.+....++. +..+.++|
T Consensus 11 ~v~l~~~~~~~~lG~~~~~~~~~~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~~~~-~~~v~l~v 89 (101)
T 1uez_A 11 LVSLRRAKAHEGLGFSIRGGSEHGVGIYVSLVEPGSLAEKEGLRVGDQILRVNDKSLARVTHAEAVKALKG-SKKLVLSV 89 (101)
T ss_dssp EECCCCCCTTTCSSEEEEECTTTTCCEEEEEECTTSHHHHHTCCSSCCEEEETTEECSSCCHHHHHHHSSS-SSSCCEEE
T ss_pred EEEEEECCCCCcccEEEeCCCCCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCcCHHHHHHhhcC-CCeEEEEE
Confidence 33443333 37899999887655568999999999999999999999999999999999988654444333 45677877
Q ss_pred EC
Q psy5188 108 LR 109 (109)
Q Consensus 108 ~r 109 (109)
.|
T Consensus 90 ~R 91 (101)
T 1uez_A 90 YS 91 (101)
T ss_dssp CC
T ss_pred EE
Confidence 65
No 131
>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter usage, alternative splicing, cell junction, cell membrane, disease mutation; 1.75A {Homo sapiens}
Probab=99.44 E-value=2.9e-12 Score=71.58 Aligned_cols=65 Identities=35% Similarity=0.561 Sum_probs=58.5
Q ss_pred CCccEEEecccCCCCCeEEEEECCCChhhhCC-CCCCCEEEEECCEeCCCCCHHHHHHHHhCCCCeEEEEEE
Q psy5188 38 EAWGFRLTGGRDFGTPLTVLRVTGTSVAEEGG-MEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQIL 108 (109)
Q Consensus 38 ~~~G~~~~~~~~~~~~~~V~~v~~~~~a~~~G-l~~gD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~ 108 (109)
..+|+.+.+ +++|..+.+++||+++| ++.||+|++|||.++.+.++.+....++..++.+.+++.
T Consensus 13 ~~~G~~~~~------gv~V~~V~~gspA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~i~~~~~~v~L~v~ 78 (88)
T 3e17_A 13 EEYGLRLGS------QIFVKEMTRTGLATKDGNLHEGDIILKINGTVTENMSLTDARKLIEKSRGKLQLVVL 78 (88)
T ss_dssp CCCCEEEEE------EEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHTTTEEEEEEC
T ss_pred CCCCEEEeC------CEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEe
Confidence 688998764 58899999999999999 999999999999999988999988888888888888875
No 132
>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.43 E-value=4.7e-13 Score=76.47 Aligned_cols=78 Identities=22% Similarity=0.367 Sum_probs=63.2
Q ss_pred EEEEEEecCC-CCccEEEecccCCCCCeEEEEECCCChhhhCCCCCCCEEEEECCEeCCCCCHHHHHHHHhCCCCeEEEE
Q psy5188 28 EELKLKKLEC-EAWGFRLTGGRDFGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQ 106 (109)
Q Consensus 28 ~~~~~~~~~~-~~~G~~~~~~~~~~~~~~V~~v~~~~~a~~~Gl~~gD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~ 106 (109)
+.+.+.+.+. .++||.+... .++.|..|.+++||+++||++||+|++|||.++.++++.+....++..+..+.++
T Consensus 15 ~~~~v~l~~~~~g~G~~~~~~----~~~~V~~V~~~spA~~aGL~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~~v~l~ 90 (100)
T 1whd_A 15 EKLQITIRRGKDGFGFTICCD----SPVRVQAVDSGGPAERAGLQQLDTVLQLNERPVEHWKCVELAHEIRSCPSEIILL 90 (100)
T ss_dssp EEEEEEEECCSSSSSCBCCCS----SSCBCCBCCTTSHHHHHTCCSSCEEEEETTEECTTCCHHHHHHHHHHCSSEEEEE
T ss_pred ceEEEEEECCCCeeeEEEeCC----CCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEE
Confidence 4455555454 7899887653 3688999999999999999999999999999999888888777777666778888
Q ss_pred EEC
Q psy5188 107 ILR 109 (109)
Q Consensus 107 v~r 109 (109)
|.|
T Consensus 91 v~R 93 (100)
T 1whd_A 91 VWR 93 (100)
T ss_dssp EEE
T ss_pred EEE
Confidence 865
No 133
>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding protein; PDZ domain, cytoplasm, membrane, polymorphism, protein binding; 2.70A {Homo sapiens}
Probab=99.43 E-value=1.3e-12 Score=75.08 Aligned_cols=79 Identities=25% Similarity=0.379 Sum_probs=63.2
Q ss_pred EEEEEecCCCCccEEEecc-------cCCCCCeEEEEECCCChhhhCCCCCCCEEEEECCEeCCCCCHHHHHHHHhCCCC
Q psy5188 29 ELKLKKLECEAWGFRLTGG-------RDFGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGSGN 101 (109)
Q Consensus 29 ~~~~~~~~~~~~G~~~~~~-------~~~~~~~~V~~v~~~~~a~~~Gl~~gD~I~~vng~~v~~~~~~~~~~~~~~~~~ 101 (109)
.+.+.+....+|||.+.+. .+...++.|..|.+++||+.+||++||+|++|||.++.++++.+....++..+.
T Consensus 18 ~v~l~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~V~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~ 97 (104)
T 2z17_A 18 LVTVEKQDNETFGFEIQSYRPQNQNACSSEMFTLICKIQEDSPAHCAGLQAGDVLANINGVSTEGFTYKQVVDLIRSSGN 97 (104)
T ss_dssp EEEEECCTTSCCSEEEEECCCCCCSSSCCSCCEEEEEECTTSHHHHHTCCTTCBCCEETTEECTTCCHHHHHHHHHHTTT
T ss_pred EEEEEeCCCCCccEEEEeeecccCCcccCCCCeEEEEECCCChHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCC
Confidence 3445554457899999862 123357899999999999999999999999999999998888888888877666
Q ss_pred eEEEEE
Q psy5188 102 TLTLQI 107 (109)
Q Consensus 102 ~v~l~v 107 (109)
.+.++|
T Consensus 98 ~v~l~v 103 (104)
T 2z17_A 98 LLTIET 103 (104)
T ss_dssp EEEEEC
T ss_pred cEEEEE
Confidence 777765
No 134
>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs large homolog 2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=6.9e-13 Score=74.62 Aligned_cols=76 Identities=24% Similarity=0.390 Sum_probs=62.2
Q ss_pred EEEEecCCCCccEEEecccCCCCCeEEEEECCCChhhhCC-CCCCCEEEEECCEeCCCCCHHHHHHHHhCCCCeEEEEEE
Q psy5188 30 LKLKKLECEAWGFRLTGGRDFGTPLTVLRVTGTSVAEEGG-MEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQIL 108 (109)
Q Consensus 30 ~~~~~~~~~~~G~~~~~~~~~~~~~~V~~v~~~~~a~~~G-l~~gD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~ 108 (109)
+.+.+....++||++... ..++.|..|.+++||+++| |++||.|++|||.++ +.++.+....++..+..+.+++.
T Consensus 10 v~l~k~~~~~lG~~i~~~---~~~v~V~~V~~~spA~~ag~L~~GD~I~~ing~~v-~~~~~~~~~~l~~~~~~v~l~v~ 85 (91)
T 2e7k_A 10 VGIRKTAGEHLGVTFRVE---GGELVIARILHGGMVAQQGLLHVGDIIKEVNGQPV-GSDPRALQELLRNASGSVILKIL 85 (91)
T ss_dssp CCBCCCTTCCCCEEEEES---SSSEEEEEECSSSHHHHHCCCCTTCEEEEETTEEC-TTCHHHHHHHHHTCCSSBCEEEE
T ss_pred EEEEECCCCcEeEEEEec---CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEEC-CCCHHHHHHHHHcCCCeEEEEEE
Confidence 344444457899999863 2478999999999999987 999999999999999 77888888888777778888876
Q ss_pred C
Q psy5188 109 R 109 (109)
Q Consensus 109 r 109 (109)
|
T Consensus 86 ~ 86 (91)
T 2e7k_A 86 S 86 (91)
T ss_dssp C
T ss_pred E
Confidence 5
No 135
>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein; structural protein-hydrolase complex, peptide binding protei; NMR {Homo sapiens}
Probab=99.14 E-value=1.2e-14 Score=84.88 Aligned_cols=81 Identities=26% Similarity=0.515 Sum_probs=65.1
Q ss_pred EEEEEEecCCCCccEEEecccCCCCCeEEEEECCCChhhh-CCCCCCCEEEEECCEeCCCCCHHHHHHHHhCCCCeEEEE
Q psy5188 28 EELKLKKLECEAWGFRLTGGRDFGTPLTVLRVTGTSVAEE-GGMEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQ 106 (109)
Q Consensus 28 ~~~~~~~~~~~~~G~~~~~~~~~~~~~~V~~v~~~~~a~~-~Gl~~gD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~ 106 (109)
+.+.+.+....+|||++.++.+...++.|..|.+++||++ +||++||+|++|||.++.+.++.+....++..+..+.++
T Consensus 29 ~~v~l~k~~~~glG~~l~~g~~~~~gv~V~~V~~~spA~~~aGL~~GD~Il~ING~~v~~~~~~~~~~~l~~~~~~v~l~ 108 (112)
T 2lob_A 29 RKVLLLKEDHEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQQRGEIEFE 108 (112)
Confidence 4455555555899999988766555789999999999999 899999999999999998777777777777666667776
Q ss_pred EE
Q psy5188 107 IL 108 (109)
Q Consensus 107 v~ 108 (109)
+.
T Consensus 109 V~ 110 (112)
T 2lob_A 109 VV 110 (112)
Confidence 54
No 136
>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding, nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens} PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A
Probab=99.42 E-value=3e-12 Score=77.28 Aligned_cols=72 Identities=31% Similarity=0.468 Sum_probs=61.0
Q ss_pred CCccEEEecccC------------CCCCeEEEEECCCChhhhCCCCCCCEEEEECCEeCCCCCHHHHHHHHhC-CCCeEE
Q psy5188 38 EAWGFRLTGGRD------------FGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIG-SGNTLT 104 (109)
Q Consensus 38 ~~~G~~~~~~~~------------~~~~~~V~~v~~~~~a~~~Gl~~gD~I~~vng~~v~~~~~~~~~~~~~~-~~~~v~ 104 (109)
.++||++.++.+ ...++.|..|.+++||+++||++||.|++|||.++.++++.+....++. .+..+.
T Consensus 38 ~~lG~~i~~g~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aGL~~GD~I~~vng~~v~~~~~~~~~~~l~~~~g~~v~ 117 (139)
T 2vz5_A 38 LILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAGLQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVR 117 (139)
T ss_dssp EECSEEEEECTTSCGGGCSSCSSTTCCCEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHCCTTCSEEE
T ss_pred ccccEEEEccccCChhhhhhcccCCCCCEEEEEECCCCHHHHCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCCEEE
Confidence 579999876543 1357899999999999999999999999999999998888888877776 468888
Q ss_pred EEEEC
Q psy5188 105 LQILR 109 (109)
Q Consensus 105 l~v~r 109 (109)
+++.|
T Consensus 118 l~v~R 122 (139)
T 2vz5_A 118 LLVTR 122 (139)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 88865
No 137
>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3, DLG3-human presynaptic protein, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.41 E-value=1.2e-12 Score=76.15 Aligned_cols=80 Identities=28% Similarity=0.441 Sum_probs=65.4
Q ss_pred EEEEEEecCCCCccEEEecccCCCCCeEEEEECCCChhhhCC-CCCCCEEEEECCEeCCCCCHHHHHHHHhCCCCeEEEE
Q psy5188 28 EELKLKKLECEAWGFRLTGGRDFGTPLTVLRVTGTSVAEEGG-MEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQ 106 (109)
Q Consensus 28 ~~~~~~~~~~~~~G~~~~~~~~~~~~~~V~~v~~~~~a~~~G-l~~gD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~ 106 (109)
+.+.+.+ ...+|||.+.++.+ ..++.|..+.+++||+++| |++||+|++|||.++.++++.+....++..+..+.++
T Consensus 17 ~~v~l~k-~~~glG~~l~~~~~-~~gv~V~~V~~~s~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~~~~~~~~v~l~ 94 (113)
T 1um7_A 17 RKIILHK-GSTGLGFNIVGGED-GEGIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATHEQAAAALKRAGQSVTIV 94 (113)
T ss_dssp EEEEEEC-CSSCSSBCCBCCST-TCCCBCCCBCSSSHHHHTTCCCTTCEEEEESSCBCTTCCHHHHHHHHHSCCSEEEEE
T ss_pred EEEEEEE-CCCcccEEEEeccC-CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCcEEEE
Confidence 3344443 23789999987654 3478899999999999999 9999999999999999998888777777778888888
Q ss_pred EEC
Q psy5188 107 ILR 109 (109)
Q Consensus 107 v~r 109 (109)
+.|
T Consensus 95 v~r 97 (113)
T 1um7_A 95 AQY 97 (113)
T ss_dssp EEC
T ss_pred EEE
Confidence 875
No 138
>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger, oxidoreductase; 1.25A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1qav_B
Probab=99.41 E-value=5.4e-12 Score=73.28 Aligned_cols=79 Identities=23% Similarity=0.379 Sum_probs=62.9
Q ss_pred EEEEecCCCCccEEEecccCCCCCeEEEEECCCChhhhCCC-CCCCEEEEECCEeCCCCCHHHHHHHHhC-CCCeEEEEE
Q psy5188 30 LKLKKLECEAWGFRLTGGRDFGTPLTVLRVTGTSVAEEGGM-EVGDMIVSINGQCTQAMTHVEAQQHIIG-SGNTLTLQI 107 (109)
Q Consensus 30 ~~~~~~~~~~~G~~~~~~~~~~~~~~V~~v~~~~~a~~~Gl-~~gD~I~~vng~~v~~~~~~~~~~~~~~-~~~~v~l~v 107 (109)
+.+......++|+.+....+ ..++.|..+.+++||+++|+ ++||.|++|||.++.++++.+....++. .+..+.+++
T Consensus 5 v~l~~~~~~glG~~~~~~~~-~~~~~V~~v~~~spA~~aGll~~GD~I~~ing~~v~~~~~~~~~~~l~~~~g~~v~l~v 83 (112)
T 1qau_A 5 VRLFKRKVGGLGFLVKERVS-KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLI 83 (112)
T ss_dssp EEEECBTTTBTSEEEEECSS-SSCEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTSCHHHHHHHHHHSCSSSEEEEE
T ss_pred EEEEcCCCCceeEEEEecCC-CCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCcEEEEE
Confidence 34444345789999886543 33789999999999999997 9999999999999998777777777765 467888887
Q ss_pred EC
Q psy5188 108 LR 109 (109)
Q Consensus 108 ~r 109 (109)
.|
T Consensus 84 ~R 85 (112)
T 1qau_A 84 LR 85 (112)
T ss_dssp EE
T ss_pred Ee
Confidence 65
No 139
>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.40 E-value=6.1e-12 Score=73.64 Aligned_cols=78 Identities=27% Similarity=0.380 Sum_probs=63.2
Q ss_pred EEEEEecCCCCccEEEecccCCCCCeEEEEECCCChhhhCCCCCCCEEEEECCEeCCCCCHHHHHHHHhCCCCeEEEEEE
Q psy5188 29 ELKLKKLECEAWGFRLTGGRDFGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQIL 108 (109)
Q Consensus 29 ~~~~~~~~~~~~G~~~~~~~~~~~~~~V~~v~~~~~a~~~Gl~~gD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~ 108 (109)
.+.+.. ...++|+.+.++.+ .++.|..|.+++||+++||++||+|++|||.++.++.+.+....+...+..+.+++.
T Consensus 22 ~v~l~~-~~~~lG~~~~~~~~--~gv~V~~V~~~spA~~aGL~~GD~Il~vng~~v~~~~~~~~~~~~~~~g~~v~l~v~ 98 (117)
T 1uit_A 22 HVKVQK-GSEPLGISIVSGEK--GGIYVSKVTVGSIAHQAGLEYGDQLLEFNGINLRSATEQQARLIIGQQCDTITILAQ 98 (117)
T ss_dssp EEEEEC-SSCCCCEEEEECTT--SCEEEEEECTTSHHHHHTCCTTCEECEETTEETTTCCHHHHHHHTTSCCSEEEEEEC
T ss_pred EEEEEe-CCCCccEEEEccCC--CCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEE
Confidence 344443 23789999876643 379999999999999999999999999999999999888766555667888888886
Q ss_pred C
Q psy5188 109 R 109 (109)
Q Consensus 109 r 109 (109)
|
T Consensus 99 r 99 (117)
T 1uit_A 99 Y 99 (117)
T ss_dssp C
T ss_pred E
Confidence 5
No 140
>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function; 1.80A {Homo sapiens} PDB: 3ch8_A
Probab=99.40 E-value=3.4e-12 Score=80.57 Aligned_cols=71 Identities=28% Similarity=0.353 Sum_probs=61.9
Q ss_pred CCccEEEecccC--------CCCCeEEEEECCCChhhhCCCCCCCEEEEECCEeCCCCCHHHHHHHHhCCCCeEEEEEEC
Q psy5188 38 EAWGFRLTGGRD--------FGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQILR 109 (109)
Q Consensus 38 ~~~G~~~~~~~~--------~~~~~~V~~v~~~~~a~~~Gl~~gD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~r 109 (109)
.+|||++.++.+ ...++.|..|.+++||++ ||++||.|++|||.++.+..+.+....++..+..+.+++.|
T Consensus 2 ~g~Gf~i~gg~~~~~~~~~~~~~g~~V~~v~~~spA~~-gl~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~r 80 (195)
T 2qbw_A 2 PELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK-LLQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIVR 80 (195)
T ss_dssp CCSSEEEEECTTSCCCSSCTTCCSEEEEEECTTSTTTT-TCCTTCEEEEETTEECTTCCHHHHHHHHHHCCSEEEEEEEE
T ss_pred CcccEEEECCcCCCCCccccCCCCEEEEEECCCChHHh-CCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEE
Confidence 579999998753 235799999999999999 99999999999999999998888888887777788888865
No 141
>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster}
Probab=99.38 E-value=8.2e-12 Score=79.36 Aligned_cols=79 Identities=24% Similarity=0.328 Sum_probs=65.6
Q ss_pred EEEEecCCCCccEEEecccCCC--CCeEEEEECCCChhhhCC-CCCCCEEEEECCEeCCC--CCHHHHHHHHhCCCCe-E
Q psy5188 30 LKLKKLECEAWGFRLTGGRDFG--TPLTVLRVTGTSVAEEGG-MEVGDMIVSINGQCTQA--MTHVEAQQHIIGSGNT-L 103 (109)
Q Consensus 30 ~~~~~~~~~~~G~~~~~~~~~~--~~~~V~~v~~~~~a~~~G-l~~gD~I~~vng~~v~~--~~~~~~~~~~~~~~~~-v 103 (109)
+.+.+ ...++||++.++.+.. .+++|..|.+++||+++| |++||.|++|||.++.+ .++.+....++..+.. +
T Consensus 22 v~~~~-~~~~lG~~i~~g~~~~~~~g~~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~~~~~~~~~~~v 100 (206)
T 3r0h_A 22 IELKV-EKKPMGVIVCGGKNNHVTTGCVITHVYPEGQVAADKRLKIFDHICDINGTPIHVGSMTTLKVHQLFHTTYEKAV 100 (206)
T ss_dssp EEEEC-TTSCCCEEEECCSSSSCCSCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECCGGGSCHHHHHHHHHSCCSSEE
T ss_pred EEEEe-CCCCcCEEEecccCCCCCCCeEEEEECCCChHHhcCCCCCCCEEEEECCEEcCCCccCHHHHHHHHHhcCCCce
Confidence 44443 3489999999876543 378999999999999998 99999999999999999 8888888778777666 8
Q ss_pred EEEEEC
Q psy5188 104 TLQILR 109 (109)
Q Consensus 104 ~l~v~r 109 (109)
.+++.|
T Consensus 101 ~l~v~R 106 (206)
T 3r0h_A 101 TLTVFR 106 (206)
T ss_dssp EEEEEC
T ss_pred EEEEEe
Confidence 888875
No 142
>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=1.2e-12 Score=74.27 Aligned_cols=67 Identities=25% Similarity=0.487 Sum_probs=58.0
Q ss_pred CCccEEEecccCCCCCeEEEEECCCChhhhCCCCCCCEEEEECCEeCCCCCHHHHHHHHhCCCCeEEEEEEC
Q psy5188 38 EAWGFRLTGGRDFGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQILR 109 (109)
Q Consensus 38 ~~~G~~~~~~~~~~~~~~V~~v~~~~~a~~~Gl~~gD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~r 109 (109)
.+|||.+.+ ..++.|..|.+++||+ +||++||+|++|||.++.+.++.+....++..+..+.+++.|
T Consensus 21 ~~~G~~l~~----~~~~~V~~V~~~spA~-agL~~GD~Il~ing~~v~~~~~~~~~~~~~~~g~~v~l~v~R 87 (96)
T 2edv_A 21 QDYGFHISE----SLPLTVVAVTAGGSAH-GKLFPGDQILQMNNEPAEDLSWERAVDILREAEDSLSITVVR 87 (96)
T ss_dssp CSCSBCCCS----SSSCBCCCBCSSSSST-TTSCTTCBEEEESSCBSTTCCHHHHHHHHHHCSSCEEEEEEE
T ss_pred CcccEEEec----CCCeEEEEECCCCchh-hCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEE
Confidence 479998875 2368899999999995 899999999999999999988888887777778899998875
No 143
>2eaq_A LIM domain only protein 7; conserved hypothetical protein, structural genomics, NPPSFA; 1.46A {Homo sapiens}
Probab=99.37 E-value=9.5e-12 Score=69.54 Aligned_cols=69 Identities=22% Similarity=0.233 Sum_probs=55.2
Q ss_pred CCccEEEecccCCCCCeEEEEECCCChhhhCCCCCCCEEEEECCEeCCCCCHHHHHHHHhC--CCCeEEEEEEC
Q psy5188 38 EAWGFRLTGGRDFGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIG--SGNTLTLQILR 109 (109)
Q Consensus 38 ~~~G~~~~~~~~~~~~~~V~~v~~~~~a~~~Gl~~gD~I~~vng~~v~~~~~~~~~~~~~~--~~~~v~l~v~r 109 (109)
..+|+.+.... .++.|..|.+++||+.+||++||.|+++||.++.+.++.+....+.. .+..+.+++.|
T Consensus 17 ~~lG~~~~~~~---~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R 87 (90)
T 2eaq_A 17 LDFGFTIKWDI---PGIFVASVEAGSPAEFSQLQVDDEIIAINNTKFSYNDSKEWEEAMAKAQETGHLVMDVRR 87 (90)
T ss_dssp SCCSEEEEEET---TEEEEEEECTTSHHHHTTCCTTCEEEEETTEECCTTCHHHHHHHHHHHHHHTEEEEEEEE
T ss_pred CcccEEEEecC---CCEEEEEECCCChHHHcCCCCCCEEEEECCEEccCCCHHHHHHHHHhcCCCCEEEEEEEe
Confidence 47899876432 36889999999999999999999999999999965566666666653 46788888875
No 144
>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction, membrane, phosphoprot domain, tight junction, transmembrane; 2.40A {Homo sapiens}
Probab=99.36 E-value=2.3e-11 Score=68.15 Aligned_cols=66 Identities=30% Similarity=0.536 Sum_probs=56.8
Q ss_pred CCccEEEecccCCCCCeEEEEECCCChhhhCC-CCCCCEEEEECCEeCCCCCHHHHHHHHhCCCCeEEEEEEC
Q psy5188 38 EAWGFRLTGGRDFGTPLTVLRVTGTSVAEEGG-MEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQILR 109 (109)
Q Consensus 38 ~~~G~~~~~~~~~~~~~~V~~v~~~~~a~~~G-l~~gD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~r 109 (109)
..+|+.+. .++.|..+.+++||+.+| |++||.|+++||.++.++++.+....++..+..+.+++.|
T Consensus 15 ~~~g~~~~------~gv~V~~v~~~s~A~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~r 81 (92)
T 3cyy_A 15 EEYGLRLA------SHIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERSKGKLKMVVQR 81 (92)
T ss_dssp SCCCEEEE------EEEEEEEECTTCHHHHSCCCCTTCEEEEETTEECTTCCHHHHHHHHHTTTTEEEEEEEC
T ss_pred CCCCEEEe------CCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCcEEEEEEe
Confidence 67888765 258899999999999999 9999999999999999878888777777766788888875
No 145
>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural genomics, mouse cDNA, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.35 E-value=4.5e-12 Score=75.34 Aligned_cols=79 Identities=16% Similarity=0.233 Sum_probs=63.9
Q ss_pred EEEEEEecCC-CCccEEEecccCCCCCeEEEEECCCChhhhCC-CCCCCEEEEECCEeCCCCCHHHHHHHHhC--CCCeE
Q psy5188 28 EELKLKKLEC-EAWGFRLTGGRDFGTPLTVLRVTGTSVAEEGG-MEVGDMIVSINGQCTQAMTHVEAQQHIIG--SGNTL 103 (109)
Q Consensus 28 ~~~~~~~~~~-~~~G~~~~~~~~~~~~~~V~~v~~~~~a~~~G-l~~gD~I~~vng~~v~~~~~~~~~~~~~~--~~~~v 103 (109)
+.+.+.+.+. .++||.+.+.. .++.|..|.+++||+++| |++||.|++|||.++.+.++.+....++. .+..+
T Consensus 27 ~~~~~~l~k~~~glG~~i~~~~---~~v~V~~V~~gspA~~aG~L~~GD~Il~VnG~~v~~~s~~d~~~~l~~~~~G~~v 103 (126)
T 1wif_A 27 KVIQTKLTVGNLGLGLVVIQNG---PYLQISHLINKGAAASDGILQPGDVLISVGHANVLGYTLREFLKLLQNITIGTVL 103 (126)
T ss_dssp CEEEEEEECCTTCCCCCEEEET---TEEEECCCCTTSSGGGCSSSCTTCBEEEESSSCCTTCCHHHHHHHHTSCCSSCEE
T ss_pred ceEEEEEecCCceEeEEEEcCC---CcEEEEEECCCCHHHHcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCCCEE
Confidence 3444544444 88999876532 257899999999999999 99999999999999987788888888876 47899
Q ss_pred EEEEEC
Q psy5188 104 TLQILR 109 (109)
Q Consensus 104 ~l~v~r 109 (109)
.++|.|
T Consensus 104 ~l~V~R 109 (126)
T 1wif_A 104 QIKAYR 109 (126)
T ss_dssp EEEEES
T ss_pred EEEEEE
Confidence 999886
No 146
>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing protein 3; structural genomics consortium, SGC, PDZ domain, signaling P; 1.60A {Homo sapiens}
Probab=99.35 E-value=2.3e-11 Score=70.86 Aligned_cols=75 Identities=23% Similarity=0.342 Sum_probs=59.5
Q ss_pred EEEEecC-CCCccEEEecccCCCCCeEEEEECCCChhhhCCCCCCCEEEEECCEeCCCCCHHHHHHHHhCC--CCeEEEE
Q psy5188 30 LKLKKLE-CEAWGFRLTGGRDFGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGS--GNTLTLQ 106 (109)
Q Consensus 30 ~~~~~~~-~~~~G~~~~~~~~~~~~~~V~~v~~~~~a~~~Gl~~gD~I~~vng~~v~~~~~~~~~~~~~~~--~~~v~l~ 106 (109)
+++.+.. ..++||++.++.. +.+|..+.+ +++.+||++||.|++|||.++.++++.++...++.+ +..+.|+
T Consensus 14 ~~V~L~Kg~~G~GFsI~~~~~---g~~V~~I~~--~~~~aGL~~GD~Il~VNG~~v~~~~h~evv~~lk~~~~G~~v~L~ 88 (113)
T 3soe_A 14 VTIPLIKGPKGFGFAIADSPT---GQKVKMILD--SQWCQGLQKGDIIKEIYHQNVQNLTHLQVVEVLKQFPVGADVPLL 88 (113)
T ss_dssp EEEEEECBTTBSSEEEEEETT---EEEEEEESC--GGGSTTCCTTCEEEEETTEECTTSCHHHHHHHHHHSCTTCEEEEE
T ss_pred EEEEEEECCCcccEEEeCCCC---CcEEEEecC--hHHhCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCCCEEEEE
Confidence 3444443 4799999965432 456777776 578889999999999999999999999999988864 7789999
Q ss_pred EEC
Q psy5188 107 ILR 109 (109)
Q Consensus 107 v~r 109 (109)
|.|
T Consensus 89 V~R 91 (113)
T 3soe_A 89 ILR 91 (113)
T ss_dssp EEE
T ss_pred EEE
Confidence 876
No 147
>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ domain, protein, acetylation, cell projection, disease mutation, membrane; NMR {Homo sapiens}
Probab=99.34 E-value=1.8e-11 Score=72.58 Aligned_cols=80 Identities=26% Similarity=0.351 Sum_probs=62.7
Q ss_pred EEEEEEecCCCCccEEEecccCCCCCeEEEEECCCChhhhCCCCCCCEEEEECCEeCCCCCHHHHHHHHhCC-CCeEEEE
Q psy5188 28 EELKLKKLECEAWGFRLTGGRDFGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGS-GNTLTLQ 106 (109)
Q Consensus 28 ~~~~~~~~~~~~~G~~~~~~~~~~~~~~V~~v~~~~~a~~~Gl~~gD~I~~vng~~v~~~~~~~~~~~~~~~-~~~v~l~ 106 (109)
+.+.+.. ...++||.+....+. .++.|..+.+++||+.+||++||.|++|||.++.++++.+....++.. +..+.++
T Consensus 11 r~v~l~~-~~~g~G~~l~~~~~~-~gv~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~~~~l~ 88 (128)
T 2kjd_A 11 RLCTMKK-GPSGYGFNLHSDKSK-PGQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQHGDVVSAIRAGGDETKLLV 88 (128)
T ss_dssp EEEEEEC-CSSSCCEEEEECSSS-CSEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHTTCSEEEEEE
T ss_pred EEEEEec-CCCcccEEEEecCCC-CCEEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCEEEEE
Confidence 4444443 337899999866532 379999999999999999999999999999999987788877777765 4556677
Q ss_pred EEC
Q psy5188 107 ILR 109 (109)
Q Consensus 107 v~r 109 (109)
+.|
T Consensus 89 v~R 91 (128)
T 2kjd_A 89 VDR 91 (128)
T ss_dssp ECH
T ss_pred EEe
Confidence 654
No 148
>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=3.7e-12 Score=74.50 Aligned_cols=80 Identities=23% Similarity=0.373 Sum_probs=61.6
Q ss_pred EEEEEEecCC--CCccEEEecccCC-CCCeEEEEECCCChhhhCCCCCCCEEEEECCEeCCCCCHHHHHHHHhCCCCeEE
Q psy5188 28 EELKLKKLEC--EAWGFRLTGGRDF-GTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLT 104 (109)
Q Consensus 28 ~~~~~~~~~~--~~~G~~~~~~~~~-~~~~~V~~v~~~~~a~~~Gl~~gD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~ 104 (109)
..+.+.+.+. .+|||++....+. ..++.|..|.+++||+++||++||.|++|||.++.++.+.+....++. ..+.
T Consensus 17 ~~v~l~k~~~~~~~~G~~v~~~~~~~~~gv~V~~V~~~spA~~aGL~~GD~Il~Ing~~v~~~~~~~~~~~l~~--~~v~ 94 (114)
T 2d8i_A 17 QSIHIEKSDTAADTYGFSLSSVEEDGIRRLYVNSVKETGLASKKGLKAGDEILEINNRAADALNSSMLKDFLSQ--PSLG 94 (114)
T ss_dssp EEEEEECSCTTTCCCCCEEEEEEETTEEEEEEEECCTTSSHHHHTCCTTCCEEEESSCBGGGCCHHHHHHHHTS--SEEE
T ss_pred EEEEEEeCCCCccccCEEEEecCcCCcCCEEEEEeCCCCHHHHcCCCCCCEEEEECCEECCCcCHHHHHHHHhC--CcEE
Confidence 4455555444 2799998764322 136889999999999999999999999999999998877777666665 4788
Q ss_pred EEEEC
Q psy5188 105 LQILR 109 (109)
Q Consensus 105 l~v~r 109 (109)
+++.|
T Consensus 95 l~v~R 99 (114)
T 2d8i_A 95 LLVRT 99 (114)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 88765
No 149
>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics, KIAA0705 protein; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.33 E-value=3.6e-11 Score=68.15 Aligned_cols=75 Identities=27% Similarity=0.395 Sum_probs=59.4
Q ss_pred EEEEecCC-CCccEEEecccCCCCCeEEEEECCCChhhhCCCCCCCEEEEECCEeCCCCCHHHHHHHHhC--CCCeEEEE
Q psy5188 30 LKLKKLEC-EAWGFRLTGGRDFGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIG--SGNTLTLQ 106 (109)
Q Consensus 30 ~~~~~~~~-~~~G~~~~~~~~~~~~~~V~~v~~~~~a~~~Gl~~gD~I~~vng~~v~~~~~~~~~~~~~~--~~~~v~l~ 106 (109)
+++.+.+. .++||++.... .++.|..+.++ |+.+||++||.|++|||.++.++++.+....++. .+..+.++
T Consensus 12 ~~v~l~~~~~g~G~~i~~~~---~Gv~V~~v~~~--a~~aGL~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~g~~v~l~ 86 (96)
T 1ujv_A 12 MTLTIVKGAQGFGFTIADSP---TGQRVKQILDI--QGCPGLCEGDLIVEINQQNVQNLSHTEVVDILKDCPIGSETSLI 86 (96)
T ss_dssp EEEEEECCSSSSSEEEEEET---TEEEEEEESCG--GGSTTCCSSCEEEEETTEECSSCCHHHHHHHHHHSCTTSEEEEE
T ss_pred EEEEEEeCCCceeEEEEcCC---CCEEEEEEecc--cccCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCCCEEEEE
Confidence 34444444 89999996433 25788888873 7789999999999999999999988888887875 37899999
Q ss_pred EEC
Q psy5188 107 ILR 109 (109)
Q Consensus 107 v~r 109 (109)
+.|
T Consensus 87 v~R 89 (96)
T 1ujv_A 87 IHR 89 (96)
T ss_dssp EEC
T ss_pred EEE
Confidence 886
No 150
>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction, membrane, phosphorylati domain, protein binding; 1.70A {Homo sapiens} PDB: 2jwe_A 2osg_A
Probab=99.32 E-value=4.2e-11 Score=65.43 Aligned_cols=66 Identities=30% Similarity=0.531 Sum_probs=56.8
Q ss_pred CCccEEEecccCCCCCeEEEEECCCChhhhCC-CCCCCEEEEECCEeCCCCCHHHHHHHHhCCCCeEEEEEEC
Q psy5188 38 EAWGFRLTGGRDFGTPLTVLRVTGTSVAEEGG-MEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQILR 109 (109)
Q Consensus 38 ~~~G~~~~~~~~~~~~~~V~~v~~~~~a~~~G-l~~gD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~r 109 (109)
..+|+.+.. ++.|..+.+++||+.+| +++||.|+++||.++.++++.+....++..+..+.+++.|
T Consensus 13 ~~~g~~~~~------gv~V~~v~~~s~A~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~R 79 (81)
T 2rcz_A 13 EEYGLRLAS------HIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERSKGKLKMVVQR 79 (81)
T ss_dssp CCCCEEEEE------EEEEEEECTTSHHHHHSSCCTTCEEEEETTEECTTCCHHHHHHHHHTSTTEEEEEEEC
T ss_pred CCCCEEEeC------CEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCeEEEEEEe
Confidence 678887652 58899999999999999 9999999999999999888888777777666688888876
No 151
>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A
Probab=99.32 E-value=9.6e-11 Score=73.61 Aligned_cols=72 Identities=19% Similarity=0.424 Sum_probs=62.2
Q ss_pred CCccEEEecccCC-----CCCeEEEEECCCChhhhCC-CCCCCEEEEECCEeCCCCCHHHHHHHHhCCCCeEEEEEEC
Q psy5188 38 EAWGFRLTGGRDF-----GTPLTVLRVTGTSVAEEGG-MEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQILR 109 (109)
Q Consensus 38 ~~~G~~~~~~~~~-----~~~~~V~~v~~~~~a~~~G-l~~gD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~r 109 (109)
.++|+.+.++... ..+++|..|.+++||+++| |++||.|++|||.++.++++.+....++..+..+.+++.|
T Consensus 111 ~~lG~~~~~~~~~~~~~~~~gv~V~~V~~gs~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~v~l~v~R 188 (196)
T 3gsl_A 111 KGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKNTYDVVYLKVAK 188 (196)
T ss_dssp TBSCEEEEESBTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCBHHHHHHHHHSCCEEEEEEEEE
T ss_pred CCceEEEEccCCCcCCCCCCCEEEEEECCCChHHhcCCCCCCCEEEEECCCcCCCCCHHHHHHHHHcCCCeEEEEEeC
Confidence 6899998765432 2368999999999999999 9999999999999999888888888888888888888865
No 152
>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A
Probab=99.32 E-value=2.4e-11 Score=76.90 Aligned_cols=80 Identities=29% Similarity=0.368 Sum_probs=64.5
Q ss_pred EEEEecCCCCccEEEecccCC----CCCeEEEEECCCChhhhCC-CCCCCEEEEECCEeCCCCCHHHHHHHHhCC--CCe
Q psy5188 30 LKLKKLECEAWGFRLTGGRDF----GTPLTVLRVTGTSVAEEGG-MEVGDMIVSINGQCTQAMTHVEAQQHIIGS--GNT 102 (109)
Q Consensus 30 ~~~~~~~~~~~G~~~~~~~~~----~~~~~V~~v~~~~~a~~~G-l~~gD~I~~vng~~v~~~~~~~~~~~~~~~--~~~ 102 (109)
+.+.+....+|||++.++.+. ..++.|..+.+++||+++| |++||.|+++||.++.+.++.+....++.. +..
T Consensus 10 v~l~~~~~~glG~~i~~~~~~~~~~~~~~~V~~v~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~g~~ 89 (196)
T 1p1d_A 10 VVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDSSITSK 89 (196)
T ss_dssp EEEECBTTTBCCCEEEECSSCSSSCSCSEEEEECCTTSHHHHTSCCCSSCCEEEETTBCSTTSCHHHHHHHHHTCCSSSE
T ss_pred EEEEeCCCCccCEEEeCCcCCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCe
Confidence 444444448999999987432 3468899999999999999 999999999999999987778777777764 678
Q ss_pred EEEEEEC
Q psy5188 103 LTLQILR 109 (109)
Q Consensus 103 v~l~v~r 109 (109)
+.+++.|
T Consensus 90 v~l~v~R 96 (196)
T 1p1d_A 90 VTLEIEF 96 (196)
T ss_dssp EEEEEEE
T ss_pred EEEEEEe
Confidence 8888764
No 153
>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.30 E-value=2.2e-12 Score=76.57 Aligned_cols=57 Identities=28% Similarity=0.352 Sum_probs=51.9
Q ss_pred CeEEEEECCCChhhhCCCCCCCEEEEECCEeCCCCCHHHHHHHHhCCCCeEEEEEEC
Q psy5188 53 PLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQILR 109 (109)
Q Consensus 53 ~~~V~~v~~~~~a~~~Gl~~gD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~r 109 (109)
++.|..|.+++||+++||++||+|++|||.++.++++.+....++..+..+.++|.|
T Consensus 62 gv~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v~r 118 (126)
T 2yuy_A 62 TIFVKQVKEGGPAFEAGLCTGDRIIKVNGESVIGKTYSQVIALIQNSDTTLELSVMP 118 (126)
T ss_dssp CCCBCCCCSSSHHHHHTCCSSCCCCEETTEECSSCCHHHHHHHHHTCTTEEEEECCC
T ss_pred CEEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEEEEEE
Confidence 578899999999999999999999999999999888888888888778899998865
No 154
>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster}
Probab=99.29 E-value=1.2e-10 Score=73.89 Aligned_cols=78 Identities=14% Similarity=0.306 Sum_probs=63.8
Q ss_pred EEEEEecCC--CCccEEEecccCCCCCeEEEEECCCChhhhCC-CCCCCEEEEECCEeCCCCCHHHHHHHHhCCCCeEEE
Q psy5188 29 ELKLKKLEC--EAWGFRLTGGRDFGTPLTVLRVTGTSVAEEGG-MEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTL 105 (109)
Q Consensus 29 ~~~~~~~~~--~~~G~~~~~~~~~~~~~~V~~v~~~~~a~~~G-l~~gD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l 105 (109)
.+++.+... .++||.+.... .+++|..|.++++|+++| |++||.|++|||.++.++++.+....++..+..+.+
T Consensus 114 ~~~v~l~~~~~~~lG~~~~~~~---~gv~V~~V~~gs~A~~aG~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~v~L 190 (206)
T 3r0h_A 114 KFNVDLMKKAGKELGLSLSPNE---IGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYALFKGANGKVSM 190 (206)
T ss_dssp EEEEEEECCTTCCCCEEEEECS---SCEEEEEECTTSCHHHHHHCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSEEEE
T ss_pred EEEEEEecCCCCccCeEEEcCC---ceEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEE
Confidence 344444333 67899887433 368999999999999999 999999999999999998888888888887888888
Q ss_pred EEEC
Q psy5188 106 QILR 109 (109)
Q Consensus 106 ~v~r 109 (109)
++.|
T Consensus 191 ~V~R 194 (206)
T 3r0h_A 191 EVTR 194 (206)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 8875
No 155
>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric oxide synthase, oxidoreductase; NMR {Rattus norvegicus} SCOP: b.36.1.1
Probab=99.29 E-value=1.5e-11 Score=72.96 Aligned_cols=81 Identities=22% Similarity=0.348 Sum_probs=64.8
Q ss_pred EEEEEEecCCCCccEEEecccCCCCCeEEEEECCCChhhhCCC-CCCCEEEEECCEeCCCCCHHHHHHHHhCC-CCeEEE
Q psy5188 28 EELKLKKLECEAWGFRLTGGRDFGTPLTVLRVTGTSVAEEGGM-EVGDMIVSINGQCTQAMTHVEAQQHIIGS-GNTLTL 105 (109)
Q Consensus 28 ~~~~~~~~~~~~~G~~~~~~~~~~~~~~V~~v~~~~~a~~~Gl-~~gD~I~~vng~~v~~~~~~~~~~~~~~~-~~~v~l 105 (109)
..+.+......++|+.+....+ ..++.|..+.+++||+++|+ ++||.|++|||.++.++++.+....++.. +..+.+
T Consensus 10 ~~v~l~~~~~~glG~~~~~~~~-~~~~~V~~V~~~spA~~aGll~~GD~I~~ing~~v~~~~~~~~~~~l~~~~g~~v~l 88 (127)
T 1b8q_A 10 ISVRLFKRKVGGLGFLVKERVS-KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVV 88 (127)
T ss_dssp EEEEEECTTTSCCSCCEEECTT-SSCEEECCCSSSSSHHHHSSCCTTTCCCEETTEECSSSCHHHHHHHHHSCCSSCEEE
T ss_pred EEEEEEeCCCCcEeEEEEecCC-CCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCeEEE
Confidence 3445554444799998876543 23789999999999999997 99999999999999988788877777654 678888
Q ss_pred EEEC
Q psy5188 106 QILR 109 (109)
Q Consensus 106 ~v~r 109 (109)
++.|
T Consensus 89 ~v~R 92 (127)
T 1b8q_A 89 LILR 92 (127)
T ss_dssp EEEC
T ss_pred EEEe
Confidence 8876
No 156
>3qik_A Phosphatidylinositol 3,4,5-trisphosphate-dependen exchanger 1 protein; PDZ domain, structural genomics consortium, SGC, hydrolase R; 2.29A {Homo sapiens}
Probab=99.28 E-value=8.7e-11 Score=66.95 Aligned_cols=69 Identities=28% Similarity=0.332 Sum_probs=56.4
Q ss_pred CCCccEEEecccCCCCCeEEEEECCCChhhhCCCCCCCEEEEECCEeCCCCCHHHHHHHHhC---CCCeEEEEEE
Q psy5188 37 CEAWGFRLTGGRDFGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIG---SGNTLTLQIL 108 (109)
Q Consensus 37 ~~~~G~~~~~~~~~~~~~~V~~v~~~~~a~~~Gl~~gD~I~~vng~~v~~~~~~~~~~~~~~---~~~~v~l~v~ 108 (109)
..++||.+.... .+..|..|.++|||+.+|+++||.|++|||.++...++.+....++. .++.+.+.|.
T Consensus 27 ~~g~G~~l~~~~---~~~~I~~V~~gSpA~~AGL~~GD~I~~Ing~~v~~~s~~dv~~~i~~~~~~g~~v~LLV~ 98 (101)
T 3qik_A 27 EEDYGFDIEEKN---KAVVVKSVQRGSLAEVAGLQVGRKIYSINEDLVFLRPFSEVESILNQSFCSRRPLRLLVA 98 (101)
T ss_dssp SSSSSEEEEEET---TEEEEEEECTTSHHHHHTCCTTCBEEEETTEESTTSCHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCcccEEEEccC---CCeEEEEECCCCHHHHcCCCCCCEEEEECCEEcCcCCHHHHHHHHHHhhccCCeEEEEEe
Confidence 478999987532 25788999999999999999999999999999976677777777754 5788887764
No 157
>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A
Probab=99.28 E-value=1.4e-10 Score=71.55 Aligned_cols=79 Identities=25% Similarity=0.289 Sum_probs=61.3
Q ss_pred EEEEEEecCCCCccEEEecccCCCCCeEEEEECCCChhhhCCCCCCCEEEEECCEeCCCCCHHHHHHHHhC-CCCeEEEE
Q psy5188 28 EELKLKKLECEAWGFRLTGGRDFGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIG-SGNTLTLQ 106 (109)
Q Consensus 28 ~~~~~~~~~~~~~G~~~~~~~~~~~~~~V~~v~~~~~a~~~Gl~~gD~I~~vng~~v~~~~~~~~~~~~~~-~~~~v~l~ 106 (109)
+.+.+.+....++|+.+.... .++.|..+.+++||+++||++||.|+++||.++.++.+.....+++. .+..+.++
T Consensus 6 r~v~l~k~~~~~lG~~~~~~~---~g~~V~~v~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~~~~~~~~~v~l~ 82 (166)
T 1w9e_A 6 REVILCKDQDGKIGLRLKSID---NGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDKAHKVLKQAFGEKITMT 82 (166)
T ss_dssp EEEEEECCTTSCCSEEEEEET---TEEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHHCCSSEEEEE
T ss_pred EEEEEEeCCCCcEeEEEEeCC---CCEEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCCEEEEE
Confidence 455665555578999987543 36899999999999999999999999999999999987444444443 46688887
Q ss_pred EEC
Q psy5188 107 ILR 109 (109)
Q Consensus 107 v~r 109 (109)
+.|
T Consensus 83 vr~ 85 (166)
T 1w9e_A 83 IRD 85 (166)
T ss_dssp EEC
T ss_pred EEc
Confidence 743
No 158
>2l97_A HTRA, putative serine protease; HTRA-PDZ, protein binding; NMR {Streptococcus pneumoniae}
Probab=99.27 E-value=2.1e-11 Score=73.12 Aligned_cols=96 Identities=18% Similarity=0.201 Sum_probs=64.8
Q ss_pred eeeeeeeeeecccceeeEEEEEEecCCCCccEEEecccC--------------CCCCeEEEEECCCChhhhCCCCCCCEE
Q psy5188 11 LQFDILIQLILTKEVMCEELKLKKLECEAWGFRLTGGRD--------------FGTPLTVLRVTGTSVAEEGGMEVGDMI 76 (109)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~--------------~~~~~~V~~v~~~~~a~~~Gl~~gD~I 76 (109)
+..+|+++....+.+..+-..--......+|+.+..-.. ...++.|..|.++|||+ +||++||.|
T Consensus 2 ~GigFAIP~~~~~~v~~~L~~~G~v~r~~LGv~~~~~~~~~~~~~~~lgl~~~~~~g~~V~~V~~~spA~-aGL~~GD~I 80 (134)
T 2l97_A 2 EGLGFAIPANDAINIIEQLEKNGKVTRPALGIQMVNLSNVSTSDIRRLNIPSNVTSGVIVRSVQSNMPAN-GHLEKYDVI 80 (134)
T ss_dssp CCCCCCCCCCCCCCCCCCCCCCCCSSCCCCCCEEEESSSSCHHHHHHHSSCSSSCSCEEEEECSTTSGGG-TTSCSSCEE
T ss_pred CcEEEEeEHHHHHHHHHHHHHcCCEeeeEeeEEEEECCchhHHHHHHcCCCcCCCCCEEEEEECCCCchH-HCCCCCCEE
Confidence 456778888776666532111111112567877653211 13478899999999999 999999999
Q ss_pred EEECCEeCCCCCHHHHHHHHhC--CCCeEEEEEEC
Q psy5188 77 VSINGQCTQAMTHVEAQQHIIG--SGNTLTLQILR 109 (109)
Q Consensus 77 ~~vng~~v~~~~~~~~~~~~~~--~~~~v~l~v~r 109 (109)
+++||.++.++. +....+.. .+..+.+++.|
T Consensus 81 ~~inG~~v~~~~--~l~~~l~~~~~g~~v~l~v~R 113 (134)
T 2l97_A 81 TKVDDKEIASST--DLQSALYNHSIGDTIKITYYR 113 (134)
T ss_dssp EEETTEECCCHH--HHHHHHHHSSTTCEEEEEEEE
T ss_pred EEECCEEcCCHH--HHHHHHHhCCCCCEEEEEEEE
Confidence 999999998653 33333432 57888888865
No 159
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A
Probab=99.26 E-value=7e-11 Score=81.96 Aligned_cols=72 Identities=28% Similarity=0.421 Sum_probs=62.7
Q ss_pred CCCCccEEEecccCCCCCeEEEEECCCChhhhCCCCCCCEEEEECCEeCCCCCHHHHHHHHhC--CCCeEEEEEEC
Q psy5188 36 ECEAWGFRLTGGRDFGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIG--SGNTLTLQILR 109 (109)
Q Consensus 36 ~~~~~G~~~~~~~~~~~~~~V~~v~~~~~a~~~Gl~~gD~I~~vng~~v~~~~~~~~~~~~~~--~~~~v~l~v~r 109 (109)
...++|+++.++.+ .++.|..|.++|||+++||++||+|++|||.++.++++.++...++. .+..+.+++.|
T Consensus 17 k~~~lG~~i~gg~~--~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~e~~~~l~~~~~g~~v~l~v~r 90 (391)
T 3tsz_A 17 KGDSVGLRLAGGND--VGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTILAQK 90 (391)
T ss_dssp CCSSCCEEEEEETT--TEEEEEEECTTCHHHHTTCCTTEEEEEETTEECTTCCHHHHHHHHHHSCTTSEEEEEEEE
T ss_pred cCCceeEEEEecCC--CCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhhcCCCeEEEEEee
Confidence 44579999987654 47899999999999999999999999999999999889988888874 68889998864
No 160
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}
Probab=99.26 E-value=6.1e-11 Score=83.76 Aligned_cols=74 Identities=27% Similarity=0.385 Sum_probs=64.1
Q ss_pred ecCCCCccEEEecccCCCCCeEEEEECCCChhhhCCCCCCCEEEEECCEeCCCCCHHHHHHHHhC--CCCeEEEEEEC
Q psy5188 34 KLECEAWGFRLTGGRDFGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIG--SGNTLTLQILR 109 (109)
Q Consensus 34 ~~~~~~~G~~~~~~~~~~~~~~V~~v~~~~~a~~~Gl~~gD~I~~vng~~v~~~~~~~~~~~~~~--~~~~v~l~v~r 109 (109)
+....++||.+.++.+ .+++|..|.+++||+++||++||+|++|||.++.++++.++...++. ++..+.+++.|
T Consensus 7 l~k~~~lG~~i~gg~~--~Gi~V~~V~~gspA~~aGL~~GD~Il~VNG~~v~~~t~~e~~~~L~~~~~g~~v~L~V~r 82 (468)
T 3shw_A 7 FRKGDSVGLRLAGGND--VGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTILAQK 82 (468)
T ss_dssp EECCSSCCEEEEEETT--TEEEEEEECSSSHHHHTTCCTTEEEEEETTEECTTCCHHHHHHHHHHSCTTSEEEEEEEE
T ss_pred EecCCccceEEEccCc--CCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhcCCCCEEEEEEEE
Confidence 3345889999987754 46999999999999999999999999999999999889988888876 68899988864
No 161
>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}
Probab=99.24 E-value=8.2e-11 Score=86.99 Aligned_cols=72 Identities=24% Similarity=0.453 Sum_probs=64.1
Q ss_pred CCccEEEecccCC-----CCCeEEEEECCCChhhhCC-CCCCCEEEEECCEeCCCCCHHHHHHHHhCCCCeEEEEEEC
Q psy5188 38 EAWGFRLTGGRDF-----GTPLTVLRVTGTSVAEEGG-MEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQILR 109 (109)
Q Consensus 38 ~~~G~~~~~~~~~-----~~~~~V~~v~~~~~a~~~G-l~~gD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~r 109 (109)
.+|||++.+|.+. ..+++|..|.+++||+++| |+.||.|++|||.++.++++.++...++..+..+.++|.|
T Consensus 70 ~glGf~i~gg~~~~~~~~~~g~~V~~v~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~g~~v~l~v~R 147 (721)
T 2xkx_A 70 SGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMR 147 (721)
T ss_pred CCCCEEEeCCcCCcccCCCCCeEEEEeCCCCHHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHhhccccccceEEEe
Confidence 7999999998764 3578999999999999999 9999999999999999999888888888778888888765
No 162
>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain, intracellular signaling cascade, signal transduction; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.24 E-value=2e-11 Score=71.01 Aligned_cols=70 Identities=29% Similarity=0.398 Sum_probs=57.7
Q ss_pred CCCCccEEEecccCCCCCeEEEEECCCChhhhCCCCCCCEEEEECCEeCCCCCHHHHHHHHhCC-CCeEEEEEEC
Q psy5188 36 ECEAWGFRLTGGRDFGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGS-GNTLTLQILR 109 (109)
Q Consensus 36 ~~~~~G~~~~~~~~~~~~~~V~~v~~~~~a~~~Gl~~gD~I~~vng~~v~~~~~~~~~~~~~~~-~~~v~l~v~r 109 (109)
+..++||.+.+. .++.|..+.+++||+++||++||.|++|||.++.++++.+....++.. +..+.++|.|
T Consensus 24 ~~~~~G~~l~~~----~~v~V~~V~~~spA~~aGL~~GD~Il~InG~~v~~~~~~d~~~~i~~~~~~~v~l~V~~ 94 (111)
T 1vae_A 24 EEGDLGFTLRGN----TPVQVHFLDPHCSASLAGAKEGDYIVSIQGVDCKWLTVSEVMKLLKSFGGEEVEMKVVS 94 (111)
T ss_dssp CSSCCSCCEESS----SSCEECCCCTTSSHHHHHCCTTCEEEEETTEECSSCCHHHHHHHHHHTTTSEECEEEEC
T ss_pred CCCcccEEEeCC----CCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCceEEEEEEe
Confidence 457889988654 267899999999999999999999999999999977788877777654 4568888764
No 163
>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus}
Probab=99.22 E-value=2e-10 Score=72.71 Aligned_cols=82 Identities=26% Similarity=0.387 Sum_probs=65.6
Q ss_pred EEEEEEec-CCCCccEEEecccCC----CCCeEEEEECCCChhhhCC-CCCCCEEEEECCEeCCCCCHHHHHHHHhCCCC
Q psy5188 28 EELKLKKL-ECEAWGFRLTGGRDF----GTPLTVLRVTGTSVAEEGG-MEVGDMIVSINGQCTQAMTHVEAQQHIIGSGN 101 (109)
Q Consensus 28 ~~~~~~~~-~~~~~G~~~~~~~~~----~~~~~V~~v~~~~~a~~~G-l~~gD~I~~vng~~v~~~~~~~~~~~~~~~~~ 101 (109)
+++++.+. ...++|+.+.++... ..++.|..+.+++||+.+| |++||.|++|||.++.++++.+....++..+.
T Consensus 106 ~~~~v~l~~~~~~lG~~l~~g~~~~~~~~~g~~V~~v~~~s~A~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~ 185 (200)
T 2qt5_A 106 RTVEVTLHKEGNTFGFVIRGGAHDDRNKSRPVVITCVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQCGQ 185 (200)
T ss_dssp EEEEEEEECBTTBCSEEEEEECCSSTTTCEEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTTCS
T ss_pred eEEEEEEecCCCCeEEEEECCCCCCccCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCC
Confidence 34444433 337899998865432 2367899999999999999 99999999999999998888888888877788
Q ss_pred eEEEEEEC
Q psy5188 102 TLTLQILR 109 (109)
Q Consensus 102 ~v~l~v~r 109 (109)
.+.+++.|
T Consensus 186 ~v~l~v~R 193 (200)
T 2qt5_A 186 EATLLIEY 193 (200)
T ss_dssp EEEEEEEE
T ss_pred eEEEEEEE
Confidence 88888875
No 164
>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell projection, disease mutation, membrane, phosphoprotein, polymorphism; NMR {Homo sapiens}
Probab=99.21 E-value=2.8e-11 Score=77.89 Aligned_cols=83 Identities=24% Similarity=0.323 Sum_probs=63.1
Q ss_pred ceeeEEEEEEecCCCCccEEEecccCCCCCeEEEEECCCChhhhCCCCCCCEEEEECCEeCCCCCHHHHHHHHhCCCCeE
Q psy5188 24 EVMCEELKLKKLECEAWGFRLTGGRDFGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTL 103 (109)
Q Consensus 24 ~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~V~~v~~~~~a~~~Gl~~gD~I~~vng~~v~~~~~~~~~~~~~~~~~~v 103 (109)
....+.+.+.. +..++||.+.++.+. .++.|..|.+++||+.+||++||+|++|||.++.++++.+....++..+..+
T Consensus 7 ~~~~r~v~l~k-~~~glG~~l~~~~~~-~gv~V~~V~~gSpA~~aGL~~GD~Il~VNG~~V~~~s~~dl~~~l~~~g~~v 84 (216)
T 2krg_A 7 MLRPRLCTMKK-GPSGYGFNLHSDKSK-PGQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQHGDVVSAIRAGGDET 84 (216)
T ss_dssp TCCCEEEEEEC-CSSSSCEEECCCSSS-CSCBEEEECTTSHHHHHTCCTTCBCCEETTEECTTCCTHHHHHHHHHHCSEE
T ss_pred ccceEEEEEEe-CCCCceEEEEecCCC-CCeEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhcCCeE
Confidence 33335555543 337899999876532 3688999999999999999999999999999999777777676666546777
Q ss_pred -EEEEE
Q psy5188 104 -TLQIL 108 (109)
Q Consensus 104 -~l~v~ 108 (109)
.+++.
T Consensus 85 ~~l~V~ 90 (216)
T 2krg_A 85 KLLVVD 90 (216)
T ss_dssp EEEECC
T ss_pred EEEEEE
Confidence 66654
No 165
>2yub_A LIMK-2, LIM domain kinase 2; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.18 E-value=1.3e-10 Score=68.32 Aligned_cols=72 Identities=26% Similarity=0.350 Sum_probs=56.1
Q ss_pred CCccEEEeccc---CCCCCeEEEEECC--CChhhhCCCCCCCEEEEECCEeCCCCCHHHHHHHHhCCCCeEEEEEEC
Q psy5188 38 EAWGFRLTGGR---DFGTPLTVLRVTG--TSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQILR 109 (109)
Q Consensus 38 ~~~G~~~~~~~---~~~~~~~V~~v~~--~~~a~~~Gl~~gD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~r 109 (109)
..+||.+.... +...++.|..|.+ ++||+++||++||.|++|||.++.++++.+....+...+..+.++|.|
T Consensus 27 g~~G~~v~l~~~~~~~~~gv~V~~V~~~~~spA~~aGL~~GD~Il~Vng~~v~~~~~~dl~~~l~~~g~~v~l~v~R 103 (118)
T 2yub_A 27 CRRGFSVTVESASSNYATTVQVKEVNRMHISPNNRNAIHPGDRILEINGTPVRTLRVEEVEDAIKQTSQTLQLLIEH 103 (118)
T ss_dssp SSCSSEEEEECTTSSSCCEEEEEECCTTTSCTTHHHHCCTTCCEEEESSSBTTTSCHHHHHHHHHCCSSCEEEEEEE
T ss_pred CCceEEEEeccccccCCCcEEEEEecCCCCChHHHcCCCCCCEEEEECCEECCCcCHHHHHHHHHhCCCEEEEEEEE
Confidence 44566655322 2235788999999 999999999999999999999999886677677776556788888865
No 166
>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A
Probab=99.16 E-value=1.7e-10 Score=72.92 Aligned_cols=73 Identities=22% Similarity=0.366 Sum_probs=61.0
Q ss_pred CCCccEEEecccCC--CCCeEEEEECCCChhhhCC-CCCCCEEEEECCEeCCCCCHHHHHHHHhCCCCeEEEEEEC
Q psy5188 37 CEAWGFRLTGGRDF--GTPLTVLRVTGTSVAEEGG-MEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQILR 109 (109)
Q Consensus 37 ~~~~G~~~~~~~~~--~~~~~V~~v~~~~~a~~~G-l~~gD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~r 109 (109)
...+|+.+...... ..++.|..+.+++||+.+| |++||.|+++||.++.++++.+....++..+..+.+++.|
T Consensus 118 ~~~lG~~~~~~~~~~~~~gv~V~~V~~~s~A~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~~v~l~v~R 193 (196)
T 1p1d_A 118 SVELGITISSPSSRKPGDPLVISDIKKGSVAHRTGTLELGDKLLAIDNIRLDSCSMEDAVQILQQCEDLVKLKIRK 193 (196)
T ss_dssp SCCCCCEEECSCSSSTTCCCEEEECCSSSHHHHTSCCCTTCEEEEETTEEGGGCCHHHHHHHHHHCTTCEEEEEEC
T ss_pred CCCcCEEEECCCCCCCCCCEEEEEECCCCcHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCEEEEEEEe
Confidence 36789988764321 2478999999999999999 9999999999999999877888777777668889999876
No 167
>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.12 E-value=5.9e-10 Score=65.82 Aligned_cols=70 Identities=24% Similarity=0.349 Sum_probs=56.2
Q ss_pred CCccEEEecccCC--CCCeEEEEECCCChhhhCC-CCCCCEEEEECCEeCCCCCHHHHHHHHhCC-CCeEEEEEEC
Q psy5188 38 EAWGFRLTGGRDF--GTPLTVLRVTGTSVAEEGG-MEVGDMIVSINGQCTQAMTHVEAQQHIIGS-GNTLTLQILR 109 (109)
Q Consensus 38 ~~~G~~~~~~~~~--~~~~~V~~v~~~~~a~~~G-l~~gD~I~~vng~~v~~~~~~~~~~~~~~~-~~~v~l~v~r 109 (109)
.++|+.+...... ..++.|..|.+++||+++| |++||+|++|||.++.+ +.+....++.. +..+.++|.|
T Consensus 32 ~~lG~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~--~~~~~~~l~~~~g~~v~l~v~R 105 (124)
T 1wh1_A 32 DKLGLTVCYRTDDEDDIGIYISEIDPNSIAAKDGRIREGDRIIQINGIEVQN--REEAVALLTSEENKNFSLLIAR 105 (124)
T ss_dssp CCCCEEEECCCCCSSCCCEEEEEECSSSHHHHTCCCCTTCEEEEESSCBCCS--HHHHHHHHTCSSCCSCCEEEEE
T ss_pred CcccEEEEecCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCC--HHHHHHHHHhCCCCEEEEEEEE
Confidence 5799998765421 2479999999999999999 99999999999999985 45666666653 6788888765
No 168
>3id1_A Regulator of sigma E protease; hydrolase, cell inner membrane, cell membrane, membrane, metal-binding, metalloprotease, transmembrane; 1.67A {Escherichia coli k-12} PDB: 2zpl_A
Probab=99.03 E-value=1.2e-09 Score=61.74 Aligned_cols=54 Identities=15% Similarity=0.247 Sum_probs=42.9
Q ss_pred eEEEEECCCChhhhCCCCCCCEEEEECCEeCCCCCHHHHHHHHh-CC-CCeEEEEEEC
Q psy5188 54 LTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHII-GS-GNTLTLQILR 109 (109)
Q Consensus 54 ~~V~~v~~~~~a~~~Gl~~gD~I~~vng~~v~~~~~~~~~~~~~-~~-~~~v~l~v~r 109 (109)
..|..|.+++||+++|+++||.|+++||.++.++. +....+. .. +..+.+++.|
T Consensus 4 p~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~--d~~~~l~~~~~~~~v~l~v~R 59 (95)
T 3id1_A 4 PVVGEIAANSIAAEAQIAPGTELKAVDGIETPDWD--AVRLQLVDKIGDESTTITVAP 59 (95)
T ss_dssp CBEEEECTTSHHHHTTCCTTCEEEEETTEECSSHH--HHHHHHHHTTTCSEEEEEEEC
T ss_pred CEEEeeCCCCHHHHcCCCCCCEEEEECCEECCCHH--HHHHHHHHhcCCCcEEEEEEE
Confidence 45788999999999999999999999999999653 3334443 33 3688888876
No 169
>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}
Probab=99.02 E-value=3.8e-09 Score=78.14 Aligned_cols=71 Identities=27% Similarity=0.446 Sum_probs=61.8
Q ss_pred CCccEEEecccCCCCCeEEEEECCCChhhhCC-CCCCCEEEEECCEeCCCCCHHHHHHHHhCCCCeEEEEEEC
Q psy5188 38 EAWGFRLTGGRDFGTPLTVLRVTGTSVAEEGG-MEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQILR 109 (109)
Q Consensus 38 ~~~G~~~~~~~~~~~~~~V~~v~~~~~a~~~G-l~~gD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~r 109 (109)
.++||++.++.+ ..+++|..|.++++|+++| |++||+|++|||.++.+.++.++...++..+..+.+.+.|
T Consensus 318 ~~lG~~i~~~~~-~~gv~V~~V~~gs~A~~aG~L~~GD~Il~VNg~~v~~~~~~e~~~~l~~~~~~v~L~v~r 389 (721)
T 2xkx_A 318 TGLGFNIVGGED-GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQY 389 (721)
T ss_pred CCccEEEeccCC-CCCeEEEEeCCCChHHhcCCCccCCEEEEECCEECCCCCHHHHHHHHHhcCCeEEEEEEe
Confidence 689999876643 2478999999999999999 9999999999999999988888888888777888888764
No 170
>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A
Probab=99.01 E-value=4.2e-10 Score=77.97 Aligned_cols=82 Identities=24% Similarity=0.331 Sum_probs=63.2
Q ss_pred EEEEEEecCCCCccEEEecccC--CCCCeEEEEECCCChhhhCC-CCCCCEEEEECCEeCCCCCHHHHHHHHhCC--CCe
Q psy5188 28 EELKLKKLECEAWGFRLTGGRD--FGTPLTVLRVTGTSVAEEGG-MEVGDMIVSINGQCTQAMTHVEAQQHIIGS--GNT 102 (109)
Q Consensus 28 ~~~~~~~~~~~~~G~~~~~~~~--~~~~~~V~~v~~~~~a~~~G-l~~gD~I~~vng~~v~~~~~~~~~~~~~~~--~~~ 102 (109)
+.+.+.+..+.++||.+.+... ...++.|..+.+++||+++| |++||.|++|||.++.++++.+....++.. +..
T Consensus 206 ~~V~i~k~~ge~lG~~i~~~~~g~~~~g~~V~~V~~gspA~~aG~L~~GD~Il~VnG~~v~~~~~~~~~~~l~~~~~~~~ 285 (388)
T 3suz_A 206 KELQLEKHKGEILGVVVVESGWGSILPTVILANMMNGGPAARSGKLSIGDQIMSINGTSLVGLPLATCQGIIKGLKNQTQ 285 (388)
T ss_dssp EEEEECCCSSCCCCCCCBCC---CCSCCCBCCCCCCSSHHHHTCCCCTTCEEEEETTEECSSCCSTTHHHHTTTCTTCSC
T ss_pred eEEEEECCCCCceeEEEEecCCCCcCCCEEEEeeCCCCHHHHcCCCCCCCEEEEECCEEccCCCHHHHHHHHHhccCCCc
Confidence 6667766556889998876432 12347889999999999999 999999999999999998777766767653 455
Q ss_pred EEEEEEC
Q psy5188 103 LTLQILR 109 (109)
Q Consensus 103 v~l~v~r 109 (109)
+.+++.|
T Consensus 286 v~l~v~r 292 (388)
T 3suz_A 286 VKLNIVS 292 (388)
T ss_dssp EEEEEEE
T ss_pred ccccccc
Confidence 7887754
No 171
>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane protein; 1.65A {Homo sapiens} PDB: 4edj_A
Probab=98.99 E-value=1.1e-09 Score=69.93 Aligned_cols=59 Identities=25% Similarity=0.246 Sum_probs=47.3
Q ss_pred CCCeEEEEECCCChhhhCCCCCC-CEEEEECCEeCCCCCHHHHHHHHhCCCCeEEEEEEC
Q psy5188 51 GTPLTVLRVTGTSVAEEGGMEVG-DMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQILR 109 (109)
Q Consensus 51 ~~~~~V~~v~~~~~a~~~Gl~~g-D~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~r 109 (109)
..++.|..|.++|||+++||++| |.|+++||.++.++.+..........+..+.+++.|
T Consensus 15 ~~G~~V~~V~~~SpA~~AGL~~G~D~I~~ing~~v~~~~~~~~~~~~~~~g~~v~l~v~R 74 (209)
T 3rle_A 15 TEGYHVLRVQENSPGHRAGLEPFFDFIVSINGSRLNKDNDTLKDLLKANVEKPVKMLIYS 74 (209)
T ss_dssp SEEEEEEEECTTSHHHHTTCCTTTEEEEEETTEECCSSSSHHHHHHHHTTTSCEEEEEEE
T ss_pred CCEEEEEEECCCCHHHHCCCCcCCeEEEEECCEECcCHHHHHHHHHhcCCCCEEEEEEEe
Confidence 34688999999999999999999 999999999999876544333334457888888754
No 172
>3i18_A LMO2051 protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.70A {Listeria monocytogenes} PDB: 2kjk_A 3i1e_A
Probab=98.98 E-value=1.9e-09 Score=61.33 Aligned_cols=55 Identities=22% Similarity=0.328 Sum_probs=44.2
Q ss_pred CCeEEEEECCCChhhhCCCCCCCEEEEECCEeCCCCCHHHHHHHHhC--CCCeEEEEEEC
Q psy5188 52 TPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIG--SGNTLTLQILR 109 (109)
Q Consensus 52 ~~~~V~~v~~~~~a~~~Gl~~gD~I~~vng~~v~~~~~~~~~~~~~~--~~~~v~l~v~r 109 (109)
.++.|..+.+++||+. ||++||.|+++||.++.++ .+....+.. .+..+.+++.|
T Consensus 7 ~Gv~V~~V~~~spA~~-GL~~GD~I~~Ing~~v~~~--~dl~~~l~~~~~g~~v~l~v~R 63 (100)
T 3i18_A 7 DGVYVMSVKDDVPAAD-VLHAGDLITEIDGNAFKSS--QEFIDYIHSKKVGDTVKINYKH 63 (100)
T ss_dssp CCEEEEEECTTSGGGG-TCCTTCEEEEETTBCCSSH--HHHHHHHHTSCTTCEEEEEEEE
T ss_pred CCEEEEEeCCCCchHH-CCCCCCEEEEECCEECCCH--HHHHHHHHhCCCCCEEEEEEEE
Confidence 3788999999999996 9999999999999999865 344444543 47888888765
No 173
>2i6v_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.63A {Vibrio cholerae} SCOP: b.36.1.5
Probab=98.94 E-value=1.1e-09 Score=60.86 Aligned_cols=55 Identities=20% Similarity=0.195 Sum_probs=41.6
Q ss_pred CeEEEEECCCChhhhCCCCCCCEEEEECCEeCCCCCHHHHHHHHhC--CCCeEEEEEEC
Q psy5188 53 PLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIG--SGNTLTLQILR 109 (109)
Q Consensus 53 ~~~V~~v~~~~~a~~~Gl~~gD~I~~vng~~v~~~~~~~~~~~~~~--~~~~v~l~v~r 109 (109)
++.|..+.+++||+++|+++||.|+++||.++.++.. ....+.. .+..+.+++.|
T Consensus 20 G~~V~~~~~~s~A~~aGl~~GD~I~~ing~~v~~~~d--~~~~~~~~~~g~~v~l~v~R 76 (87)
T 2i6v_A 20 GYRVSPGKDPVLFESIGLQDGDMAVALNGLDLTDPNV--MNTLFQSMNEMTEMSLTVER 76 (87)
T ss_dssp EEEEEECSCHHHHHHTTCCTTCEEEEETTEETTCHHH--HHHHHHTGGGCSEEEEEEEE
T ss_pred EEEEEeCCCCCHHHHCCCCCCCEEEEECCEECCCHHH--HHHHHHhcCCCCEEEEEEEE
Confidence 3556677778888999999999999999999996533 3344433 46788888765
No 174
>2kl1_A YLBL protein; structure genomics, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; NMR {Geobacillus thermodenitrificans}
Probab=98.89 E-value=2.3e-09 Score=60.43 Aligned_cols=55 Identities=22% Similarity=0.321 Sum_probs=43.9
Q ss_pred CCeEEEEECCCChhhhCCCCCCCEEEEECCEeCCCCCHHHHHHHHhC--CCCeEEEEEEC
Q psy5188 52 TPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIG--SGNTLTLQILR 109 (109)
Q Consensus 52 ~~~~V~~v~~~~~a~~~Gl~~gD~I~~vng~~v~~~~~~~~~~~~~~--~~~~v~l~v~r 109 (109)
.++.|..+.+++||+. ||++||.|+++||.++.++ .+....+.. .+..+.+++.|
T Consensus 5 ~Gv~V~~V~~~spA~~-GL~~GD~Il~InG~~v~~~--~~l~~~l~~~~~g~~v~l~v~R 61 (94)
T 2kl1_A 5 KGVYVMSVLPNMPAAG-RLEAGDRIAAIDGQPINTS--EQIVSYVREKQAGDRVRVTFIR 61 (94)
T ss_dssp CCEECCCCCTTSTTBT-TBCTTCEEEEETTBCCCCH--HHHHHHHHHSCTTCCEEEEEEE
T ss_pred CcEEEEEECCCChHHh-CCCCCCEEEEECCEECCCH--HHHHHHHHhCCCCCEEEEEEEE
Confidence 3678889999999999 9999999999999999865 343444443 47888888865
No 175
>2kjp_A Uncharacterized protein YLBL; mixed alpha-beta protein, cell membrane, hydrolase, membrane, protease, serine protease, transmembrane; NMR {Bacillus subtilis}
Probab=98.88 E-value=6.2e-10 Score=62.48 Aligned_cols=54 Identities=30% Similarity=0.369 Sum_probs=43.6
Q ss_pred CeEEEEECCCChhhhCCCCCCCEEEEECCEeCCCCCHHHHHHHHhC--CCCeEEEEEEC
Q psy5188 53 PLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIG--SGNTLTLQILR 109 (109)
Q Consensus 53 ~~~V~~v~~~~~a~~~Gl~~gD~I~~vng~~v~~~~~~~~~~~~~~--~~~~v~l~v~r 109 (109)
++.|..|.+++||+. ||++||.|+++||.++.++ .+....+.. .+..+.+++.|
T Consensus 2 Gv~V~~V~~~spA~~-GL~~GD~I~~InG~~v~~~--~~l~~~l~~~~~g~~v~l~v~R 57 (91)
T 2kjp_A 2 GIYASSVVENMPAKG-KIEVGDKIISADGKNYQSA--EKLIDYISSKKAGDKVTLKIER 57 (91)
T ss_dssp CSSCCCCCCSSCCSS-CCCSSCEEEEETTBCCSSH--HHHHHHHSSCCSSCEECEEEES
T ss_pred ceEEEEECCCChHHH-cCCCCCEEEEECCEECCCH--HHHHHHHHcCCCCCEEEEEEEE
Confidence 356778899999999 9999999999999999864 444555554 47888888876
No 176
>2zpm_A Regulator of sigma E protease; metalloproteinase, membrane protein, PDZ domain, hydrolase, inner membrane, membrane, metal-binding; HET: MLY MSE; 0.98A {Escherichia coli} PDB: 3id2_A 3id3_A 3id4_A
Probab=98.87 E-value=3.3e-09 Score=59.13 Aligned_cols=55 Identities=29% Similarity=0.393 Sum_probs=42.8
Q ss_pred CeEEEEECCCChhhhCCCCCCCEEEEECCEeCCCCCHHHHHHHHh-CCCCeEEEEEEC
Q psy5188 53 PLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHII-GSGNTLTLQILR 109 (109)
Q Consensus 53 ~~~V~~v~~~~~a~~~Gl~~gD~I~~vng~~v~~~~~~~~~~~~~-~~~~~v~l~v~r 109 (109)
++.|..+.+++||+.+|+++||.|+++||.++.++ .+....+. ..+..+.+++.|
T Consensus 5 ~~~V~~v~~~spA~~aGl~~GD~I~~ing~~v~~~--~~~~~~l~~~~g~~v~l~v~R 60 (91)
T 2zpm_A 5 EPVLENVQPNSAASXAGLQAGDRIVXVDGQPLTQW--VTFVMLVRDNPGXSLALEIER 60 (91)
T ss_dssp -CBCSEECTTSHHHHTTCCTTCEEEEETTEECCCH--HHHHHHHHHCTTCCEEEEEEE
T ss_pred CeEEEEECCCChHHhcCCCCCCEEEEECCeEcCCH--HHHHHHHhcCCCCeEEEEEEE
Confidence 35678899999999999999999999999999865 34444443 346777887765
No 177
>2pzd_A Serine protease HTRA2; PDZ domain, apoptosis, mitochondria, peptid module, hydrolase; 2.75A {Homo sapiens} SCOP: b.36.1.4
Probab=98.87 E-value=9.9e-09 Score=59.43 Aligned_cols=55 Identities=25% Similarity=0.329 Sum_probs=44.3
Q ss_pred CCeEEEEECCCChhhhCCCCCCCEEEEECCEeCCCCCHHHHHHHHhCCCCeEEEEEEC
Q psy5188 52 TPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQILR 109 (109)
Q Consensus 52 ~~~~V~~v~~~~~a~~~Gl~~gD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~r 109 (109)
.++.|..+.+++||+.+|+++||.|+++||.++.+. .+....+.. +..+.+++.|
T Consensus 35 ~gv~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~--~~~~~~l~~-~~~v~l~v~R 89 (113)
T 2pzd_A 35 HGVLIHKVILGSPAHRAGLRPGDVILAIGEQMVQNA--EDVYEAVRT-QSQLAVQIRR 89 (113)
T ss_dssp SCEEEEEEBTTSHHHHHTCCTTCEEEEETTEECCSH--HHHHHHHHH-CSSEEEEEEE
T ss_pred CCeEEEEeCCCChHHHcCCCCCCEEEEECCEECCCH--HHHHHHHhC-CCeEEEEEEE
Confidence 468899999999999999999999999999999864 444444544 5677777764
No 178
>2i4s_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.92A {Vibrio cholerae} SCOP: b.36.1.5
Probab=98.86 E-value=9e-09 Score=59.02 Aligned_cols=56 Identities=20% Similarity=0.222 Sum_probs=41.5
Q ss_pred eEEEEECCCChhhhCCCCCCCEEEEECCEeCCCCCHHHHHHHHhCCCCeEEEEEEC
Q psy5188 54 LTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQILR 109 (109)
Q Consensus 54 ~~V~~v~~~~~a~~~Gl~~gD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~r 109 (109)
+.|....+++||+++||++||.|+++||.++.++............+..+.+++.|
T Consensus 39 ~~V~~~~pas~A~~aGl~~GDvI~~ing~~v~~~~d~~~~~~~~~~g~~v~l~v~R 94 (105)
T 2i4s_A 39 YRVSPGKDPVLFESIGLQDGDMAVALNGLDLTDPNVMNTLFQSMNEMTEMSLTVER 94 (105)
T ss_dssp EEEEECSCTHHHHHHTCCTTCEEEEETTEETTSTTHHHHHHHHHTTCSEEEEEEEE
T ss_pred EEEecCCCCCHHHHcCCCCCCEEEEECCEECCCHHHHHHHHHhcCCCCeEEEEEEE
Confidence 44556667777899999999999999999999886654221112356788888865
No 179
>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A
Probab=98.85 E-value=6.6e-09 Score=72.97 Aligned_cols=58 Identities=24% Similarity=0.380 Sum_probs=46.4
Q ss_pred CCeEEEEECCCChhhhCCCCCCCEEEEECCEeCCCCCHHHHHHHHhCCCCeEEEEEEC
Q psy5188 52 TPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQILR 109 (109)
Q Consensus 52 ~~~~V~~v~~~~~a~~~Gl~~gD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~r 109 (109)
.++.|..|.+++||+++||++||+|+++||.++.++.+..........+..+.+++.|
T Consensus 263 ~G~~V~~V~~~spA~~aGL~~GD~I~~vnG~~v~~~~~l~~~l~~~~~g~~v~l~v~R 320 (436)
T 4a8c_A 263 RGAFVSEVLPGSGSAKAGVKAGDIITSLNGKPLNSFAELRSRIATTEPGTKVKLGLLR 320 (436)
T ss_pred cceEEEEECCCChHHHCCCCCCCEEEEECCEECCCHHHHHHHHHhcCCCCEEEEEEEE
Confidence 4688999999999999999999999999999999764443322223357888888875
No 180
>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics, PSI, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A
Probab=98.84 E-value=2.4e-08 Score=67.51 Aligned_cols=69 Identities=13% Similarity=0.229 Sum_probs=52.3
Q ss_pred CCccEEEecccCCCCCeEEEEECCCChhhhCCCCCCCEEEEECCEeCCCCCHHHHHHHHh--CCCCeEEEEEEC
Q psy5188 38 EAWGFRLTGGRDFGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHII--GSGNTLTLQILR 109 (109)
Q Consensus 38 ~~~G~~~~~~~~~~~~~~V~~v~~~~~a~~~Gl~~gD~I~~vng~~v~~~~~~~~~~~~~--~~~~~v~l~v~r 109 (109)
..+|+.+.... ...++.|..+.+++||+++||++||.|+++||.++.++ .+....+. ..+..+.+++.|
T Consensus 229 ~~lGi~~~~~~-~~~g~~V~~v~~~spA~~aGl~~GD~I~~ing~~v~~~--~~l~~~l~~~~~g~~v~l~v~R 299 (324)
T 1y8t_A 229 ASLGVQVTNDK-DTLGAKIVEVVAGGAAANAGVPKGVVVTKVDDRPINSA--DALVAAVRSKAPGATVALTFQD 299 (324)
T ss_dssp EECCEEEESCS-SSSSEEEEEECTTSTTTTTTCCTTCEEEEETTEECCSH--HHHHHHHHTSCTTCEEEEEEEC
T ss_pred cccceEeeecc-CCCceEEEEECCCChHHHcCCCCCCEEEEECCEECCCH--HHHHHHHHhcCCCCEEEEEEEE
Confidence 45676665321 23468899999999999999999999999999999965 33344443 357889998876
No 181
>1fc6_A Photosystem II D1 protease; D1 C-terminal processing protease, serine protease, serine- lysine catalytic DYAD, PDZ domain, photosynthesis; 1.80A {Scenedesmus obliquus} SCOP: b.36.1.3 c.14.1.2 PDB: 1fc9_A 1fc7_A 1fcf_A
Probab=98.83 E-value=4.2e-08 Score=67.92 Aligned_cols=72 Identities=21% Similarity=0.377 Sum_probs=56.4
Q ss_pred CCccEEEecccCCCCCeEEEEECCCChhhhCCCCCCCEEEEECCEeCCCCCHHHHHHHHhC-CCCeEEEEEEC
Q psy5188 38 EAWGFRLTGGRDFGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIG-SGNTLTLQILR 109 (109)
Q Consensus 38 ~~~G~~~~~~~~~~~~~~V~~v~~~~~a~~~Gl~~gD~I~~vng~~v~~~~~~~~~~~~~~-~~~~v~l~v~r 109 (109)
.++|+.+.........+.|..+.+++||+++|+++||.|++|||.++.++...+....++. .+..+.+++.|
T Consensus 85 ~giG~~~~~~~~~~~~~~V~~v~~~spA~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r 157 (388)
T 1fc6_A 85 TGVGLEITYDGGSGKDVVVLTPAPGGPAEKAGARAGDVIVTVDGTAVKGMSLYDVSDLLQGEADSQVEVVLHA 157 (388)
T ss_dssp BBCSEEEEECTTCSSCEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHCBSTTCEEEEEEEE
T ss_pred EEEEEEEEEeecCCCcEEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCCEEEEEEEe
Confidence 5788887643111236889999999999999999999999999999998866666666654 47788888764
No 182
>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A
Probab=98.80 E-value=2.1e-07 Score=57.25 Aligned_cols=73 Identities=21% Similarity=0.301 Sum_probs=56.8
Q ss_pred EEEEEEecCCCCccEEEecccCCCCCeEEEEECCCChhhhCCCCCCCEEEEECCEeCCCCCHHHHHHHHhCCCCeEEEEE
Q psy5188 28 EELKLKKLECEAWGFRLTGGRDFGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQI 107 (109)
Q Consensus 28 ~~~~~~~~~~~~~G~~~~~~~~~~~~~~V~~v~~~~~a~~~Gl~~gD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v 107 (109)
.++++.......+|+.+.. . .|..+.+++||+.+||++||.|+++||.++.++........+.+.+..+.+.+
T Consensus 90 ~~v~l~~~~~~~lG~~~~~------g-~v~~v~~~s~a~~aGl~~GD~I~~ing~~v~~~~~~~v~~~v~r~g~~~~l~v 162 (166)
T 1w9e_A 90 RTITMHKDSTGHVGFIFKN------G-KITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITI 162 (166)
T ss_dssp EEEEEECCTTSCCSEEEET------T-EEEEECTTSHHHHTTCCSSEEEEEETTEECTTCCHHHHHHHHHHSCSEEEEEE
T ss_pred EEEEEecCCCCcEeEEEeC------C-EEEEEccCCHHHHcCCCCCCEEEEECCEECCCCChHHHHHHHhhCCCEEEEEE
Confidence 3444443233678888762 2 68899999999999999999999999999999988877766777777776655
No 183
>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A
Probab=98.79 E-value=6.3e-08 Score=67.98 Aligned_cols=56 Identities=21% Similarity=0.382 Sum_probs=46.8
Q ss_pred CCeEEEEECCCChhhhCCCCCCCEEEEECCEeCCCCCHHHHHHHHhCCCCeEEEEEEC
Q psy5188 52 TPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQILR 109 (109)
Q Consensus 52 ~~~~V~~v~~~~~a~~~Gl~~gD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~r 109 (109)
.++.|..|.+++||+++||++||.|++|||.++.++ .+....++..++.+.+++.|
T Consensus 363 ~gv~V~~V~~~spA~~aGL~~GD~I~~vng~~v~~~--~~~~~~l~~~~~~v~l~v~R 418 (436)
T 4a8c_A 363 KGIKIDEVVKGSPAAQAGLQKDDVIIGVNRDRVNSI--AEMRKVLAAKPAIIALQIVR 418 (436)
T ss_pred CCEEEEEeCCCCHHHHcCCCCCCEEEEECCEECCCH--HHHHHHHHhCCCeEEEEEEE
Confidence 368899999999999999999999999999999864 45556666665688888765
No 184
>2p3w_A Probable serine protease HTRA3; PDZ domain, phage derived high affinity ligand, protein BIND; 1.70A {Homo sapiens}
Probab=98.78 E-value=2.1e-08 Score=58.00 Aligned_cols=55 Identities=29% Similarity=0.482 Sum_probs=43.5
Q ss_pred CCeEEEEECCCChhhhCCCCCCCEEEEECCEeCCCCCHHHHHHHHhCCCCeEEEEEEC
Q psy5188 52 TPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQILR 109 (109)
Q Consensus 52 ~~~~V~~v~~~~~a~~~Gl~~gD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~r 109 (109)
.++.|..+.+++||+.+||++||.|+++||.++.++ .+....+. .+..+.+++.|
T Consensus 35 ~gv~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~--~~~~~~l~-~g~~v~l~v~R 89 (112)
T 2p3w_A 35 SGIYVQEVAPNSPSQRGGIQDGDIIVKVNGRPLVDS--SELQEAVL-TESPLLLEVRR 89 (112)
T ss_dssp SSEEEEEECTTSHHHHHTCCTTCEEEEETTEECCSH--HHHHHHHH-HCSSEEEEEEE
T ss_pred CCeEEEEECCCChHHHCCCCCCCEEEEECCEECCCH--HHHHHHHh-CCCeEEEEEEE
Confidence 468899999999999999999999999999999865 33333343 35677777754
No 185
>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A* 1sot_A 1soz_A 1vcw_A 2r3y_A
Probab=98.78 E-value=4e-08 Score=66.30 Aligned_cols=56 Identities=20% Similarity=0.433 Sum_probs=46.8
Q ss_pred CCeEEEEECCCChhhhCCCCCCCEEEEECCEeCCCCCHHHHHHHHhC--CCCeEEEEEEC
Q psy5188 52 TPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIG--SGNTLTLQILR 109 (109)
Q Consensus 52 ~~~~V~~v~~~~~a~~~Gl~~gD~I~~vng~~v~~~~~~~~~~~~~~--~~~~v~l~v~r 109 (109)
.++.|..|.+++||+++||++||.|+++||.++.++ .+....+.. .+..+.+++.|
T Consensus 244 ~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~--~~l~~~l~~~~~g~~v~l~v~R 301 (318)
T 1te0_A 244 QGIVVNEVSPDGPAANAGIQVNDLIISVDNKPAISA--LETMDQVAEIRPGSVIPVVVMR 301 (318)
T ss_dssp CCEEEEEECTTSTTTTTCCCTTCCEEEETTEECCCH--HHHHHHHHTSCTTCEEEEEEES
T ss_pred CcEEEEEeCCCChHHHCCCCCCCEEEEECCEEcCCH--HHHHHHHHhcCCCCEEEEEEEE
Confidence 468899999999999999999999999999999865 344444543 57899998876
No 186
>2hga_A Conserved protein MTH1368; GFT structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: b.36.1.6
Probab=98.73 E-value=5e-08 Score=57.68 Aligned_cols=54 Identities=20% Similarity=0.220 Sum_probs=43.8
Q ss_pred CCeEEEEECCCChhhhCCCCCCCEEEEECCEeCCCCCHHHHHHHHh--CCCCeEEEEEEC
Q psy5188 52 TPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHII--GSGNTLTLQILR 109 (109)
Q Consensus 52 ~~~~V~~v~~~~~a~~~Gl~~gD~I~~vng~~v~~~~~~~~~~~~~--~~~~~v~l~v~r 109 (109)
.++.|..+.+++||+.+ |++||.|++|||.++.++ .+....+. ..+..+.+++ |
T Consensus 25 ~gv~V~~V~~~spA~~a-L~~GD~Il~InG~~v~~~--~dl~~~l~~~~~g~~v~l~V-R 80 (125)
T 2hga_A 25 DGVQIDSVVPGSPASKV-LTPGLVIESINGMPTSNL--TTYSAALKTISVGEVINITT-D 80 (125)
T ss_dssp CCEEEEEECSSSGGGGT-SCTTCEEEEETTEECSSH--HHHHHHHTTCCTTCEEEEEE-T
T ss_pred CceEEEEECCCChHHHh-cCCCCEEEEECCEEcCCH--HHHHHHHHhcCCCCEEEEEE-E
Confidence 36889999999999999 999999999999999865 34444454 3477888887 5
No 187
>3k50_A Putative S41 protease; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.00A {Bacteroides fragilis nctc 9343}
Probab=98.72 E-value=3.3e-08 Score=68.84 Aligned_cols=69 Identities=23% Similarity=0.310 Sum_probs=50.7
Q ss_pred CCccEEEecccCCCC--CeEEEEECCCChhhhCCCCCCCEEEEECCEeCCCCCHHHHHHHHhCCCCeEEEEEEC
Q psy5188 38 EAWGFRLTGGRDFGT--PLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQILR 109 (109)
Q Consensus 38 ~~~G~~~~~~~~~~~--~~~V~~v~~~~~a~~~Gl~~gD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~r 109 (109)
-++|+.+....+... .+.|..|.+++||+++||++||.|++|||.++.++. ....++..+..+.+++.|
T Consensus 74 ~G~~~~l~~~~~~~~~~~~~V~~V~~gsPA~~AGL~~GD~I~~InG~~v~~~~---~~~~l~~~g~~v~l~v~R 144 (403)
T 3k50_A 74 YGFDYTLYKVLDNDTAYNALISYVVPGSPAEEAGLQRGHWIMMMNGDYITKKV---ESELLQGSTRQLQIGVYK 144 (403)
T ss_dssp CSEEEEEEECTTCSSCEEEEEEEECTTSHHHHTTCCTTCEEEEETTBCBCTTT---GGGGTSCSCEEEEEEEEE
T ss_pred cceEEEEEEcCCCCcceeEEEEEeCCCChHHHcCCCCCCEEEEECCEEccchh---HHHHhhCCCCEEEEEEEe
Confidence 556666654332111 267899999999999999999999999999999874 234444467788887764
No 188
>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone, DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}
Probab=98.71 E-value=2.3e-08 Score=68.35 Aligned_cols=56 Identities=29% Similarity=0.428 Sum_probs=46.6
Q ss_pred CCeEEEEECCCChhhhCCCCCCCEEEEECCEeCCCCCHHHHHHHHhC--CCCeEEEEEEC
Q psy5188 52 TPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIG--SGNTLTLQILR 109 (109)
Q Consensus 52 ~~~~V~~v~~~~~a~~~Gl~~gD~I~~vng~~v~~~~~~~~~~~~~~--~~~~v~l~v~r 109 (109)
.++.|..|.+++||+++||++||.|+++||.++.++ .+....+.. .+..+.+++.|
T Consensus 263 ~G~~V~~V~~~spA~~aGL~~GDvI~~ing~~v~~~--~~l~~~l~~~~~g~~v~l~v~R 320 (345)
T 3stj_A 263 RGAFVSEVLPGSGSAKAGVKAGDIITSLNGKPLNSF--AELRSRIATTEPGTKVKLGLLR 320 (345)
T ss_dssp SSEEEEEECTTSHHHHHTCCTTCEECEETTEECSCH--HHHHHHHHTSCTTCEEEEEEEE
T ss_pred ceEEEEEeccCChHHHcCCCCCCEEEEECCEECCCH--HHHHHHHHhcCCCCEEEEEEEE
Confidence 478999999999999999999999999999999965 344444543 58899998876
No 189
>4fgm_A Aminopeptidase N family protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis L2TR}
Probab=98.65 E-value=9.1e-08 Score=69.57 Aligned_cols=66 Identities=23% Similarity=0.346 Sum_probs=50.9
Q ss_pred CCccEEEecccCCCCCeEEEEECCCChhhhCCCCCCCEEEEECCEeCCCCCHHHHHHHHh--CCCCeEEEEEEC
Q psy5188 38 EAWGFRLTGGRDFGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHII--GSGNTLTLQILR 109 (109)
Q Consensus 38 ~~~G~~~~~~~~~~~~~~V~~v~~~~~a~~~Gl~~gD~I~~vng~~v~~~~~~~~~~~~~--~~~~~v~l~v~r 109 (109)
..+|+.+.... .++.|..|.++|||+++||++||+|++|||.++. .. +....+. ..+..+.++|.|
T Consensus 485 ~~lG~~~~~~~---~gv~V~~V~~~spA~~AGL~~GD~I~aInG~~v~-~~--~l~~~l~~~~~g~~v~l~v~R 552 (597)
T 4fgm_A 485 VNFGAKYKASP---QGLDVLNVYHDESAYHAGLSAGDKIIAIDHLQAT-EQ--SVKRILERYIPGDTVTIHAFR 552 (597)
T ss_dssp CCCSEEEEEET---TEEEEEEECTTSHHHHHTCCTTCEEEEETTEECC-TT--THHHHHTTCCTTCEEEEEEEE
T ss_pred cccceEEeccC---CeEEEEEeCCCChHHHCCCCCCCEEEEECCEECC-HH--HHHHHHHhcCCCCEEEEEEEE
Confidence 57888875432 2588999999999999999999999999999995 32 2233443 357889888875
No 190
>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A
Probab=98.64 E-value=6.7e-08 Score=68.15 Aligned_cols=56 Identities=30% Similarity=0.383 Sum_probs=46.2
Q ss_pred CCeEEEEECCCChhhhCCCCCCCEEEEECCEeCCCCCHHHHHHHHh--CCCCeEEEEEEC
Q psy5188 52 TPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHII--GSGNTLTLQILR 109 (109)
Q Consensus 52 ~~~~V~~v~~~~~a~~~Gl~~gD~I~~vng~~v~~~~~~~~~~~~~--~~~~~v~l~v~r 109 (109)
.++.|..|.+++||+++||++||.|+++||.++.++.+. ...+. ..+..+.+++.|
T Consensus 282 ~G~~V~~V~~~spA~~aGL~~GDvI~~vnG~~v~~~~~l--~~~l~~~~~g~~v~l~V~R 339 (451)
T 3pv2_A 282 QGALVSQVNPNSPAELAGLKAGDIITQINDTKITQATQV--KTTISLLRVGSTVKIIVER 339 (451)
T ss_dssp CCEEEEEECTTSHHHHHTCCTTCEEEEETTEECCSHHHH--HHHHHTSCTTCEEEEEEEE
T ss_pred ceEEEEecCCCChHHHcCCCCCCEEEEECCEEcCCHHHH--HHHHHhcCCCCEEEEEEEE
Confidence 478999999999999999999999999999999976433 33343 457889888875
No 191
>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A
Probab=98.60 E-value=9.5e-08 Score=67.40 Aligned_cols=55 Identities=24% Similarity=0.308 Sum_probs=46.4
Q ss_pred CeEEEEECCCChhhhCCCCCCCEEEEECCEeCCCCCHHHHHHHHhCCCCeEEEEEEC
Q psy5188 53 PLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQILR 109 (109)
Q Consensus 53 ~~~V~~v~~~~~a~~~Gl~~gD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~r 109 (109)
++.|..+.+++||+++||++||.|++|||.++.++ .+....++..+..+.+.+.|
T Consensus 387 Gv~V~~V~~gspA~~aGL~~GD~I~~Vng~~v~~~--~~~~~~l~~~~~~v~l~v~R 441 (451)
T 3pv2_A 387 GVQVVGASENSAGWRAGIRPGDIIISANKKPVTDV--KSLQTIAQEKKKELLVQVLR 441 (451)
T ss_dssp EEEEEEECTTSHHHHHTCCTTCEEEEETTEECCSH--HHHHHHTTSSCSCEEEEEEE
T ss_pred ceEEEEECCCCHHHHcCCCCCCEEEEECCEECCCH--HHHHHHHhcCCCeEEEEEEE
Confidence 57899999999999999999999999999999864 45556666667788888765
No 192
>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane protein; 1.65A {Homo sapiens} PDB: 4edj_A
Probab=98.60 E-value=9.1e-08 Score=61.05 Aligned_cols=69 Identities=17% Similarity=0.132 Sum_probs=50.3
Q ss_pred CCccEEEecccC---CCCCeEEEEECCCChhhhCCCCC-CCEEEEECCEeCCCCCHHHHHHHHhC-CCCeEEEEEEC
Q psy5188 38 EAWGFRLTGGRD---FGTPLTVLRVTGTSVAEEGGMEV-GDMIVSINGQCTQAMTHVEAQQHIIG-SGNTLTLQILR 109 (109)
Q Consensus 38 ~~~G~~~~~~~~---~~~~~~V~~v~~~~~a~~~Gl~~-gD~I~~vng~~v~~~~~~~~~~~~~~-~~~~v~l~v~r 109 (109)
..+|+.+..-.. ...++.|..|.+++||+++||++ ||.|+++||. +.++.... ..++. .+..+.+++.|
T Consensus 95 ~~lGi~~~~~~~~~~~~~Gv~V~~V~~~spA~~aGl~~~GD~I~~ing~-v~~~~~l~--~~l~~~~g~~v~l~v~r 168 (209)
T 3rle_A 95 GLLGVSIRFCSFDGANENVWHVLEVESNSPAALAGLRPHSDYIIGADTV-MNESEDLF--SLIETHEAKPLKLYVYN 168 (209)
T ss_dssp SSSCEEEEEEECTTGGGSCEEEEEECTTSHHHHHTCCTTTEEEEEESSC-CCSSSCHH--HHHHHTTTSCEEEEEEE
T ss_pred CccceEEeecChhHccccceEEEEeCCCChHHHCCCCCCCCEEEECCCE-eCCHHHHH--HHHHhCCCCeEEEEEEE
Confidence 467887763211 12468999999999999999999 9999999997 87664433 33433 47788887754
No 193
>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A
Probab=98.59 E-value=6e-09 Score=72.23 Aligned_cols=63 Identities=27% Similarity=0.416 Sum_probs=0.0
Q ss_pred CCccEEEecccCCCCCeEEEEECCCChhhhCCCCCCCEEEEECCEeCCCCCHHHHHHHHhCCCCeEEEEE
Q psy5188 38 EAWGFRLTGGRDFGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQI 107 (109)
Q Consensus 38 ~~~G~~~~~~~~~~~~~~V~~v~~~~~a~~~Gl~~gD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v 107 (109)
..+|+.+.+ ..|..+.++++|+++||++||.|++|||.++.+.++.+....++..+..+.+++
T Consensus 308 ~~lG~~i~~-------g~I~~V~~gs~A~~aGL~~GD~Il~VNg~~v~~~s~~~~~~~l~~~~~~v~L~V 370 (388)
T 3suz_A 308 YQLGFSVQN-------GIICSLMRGGIAERGGVRVGHRIIEINGQSVVATAHEKIVQALSNSVGEIHMKT 370 (388)
T ss_dssp ----------------------------------------------------------------------
T ss_pred CccceEEec-------CEEEEeecCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEE
Confidence 457776643 267889999999999999999999999999998888887777877777776665
No 194
>3qo6_A Protease DO-like 1, chloroplastic; protease, HTRA, PH-sensor, hydrolase, photosynthesis; 2.50A {Arabidopsis thaliana}
Probab=98.58 E-value=8.4e-08 Score=65.53 Aligned_cols=56 Identities=25% Similarity=0.437 Sum_probs=46.7
Q ss_pred CCeEEEEECCCChhhhCCCCC-----------CCEEEEECCEeCCCCCHHHHHHHHh--CCCCeEEEEEEC
Q psy5188 52 TPLTVLRVTGTSVAEEGGMEV-----------GDMIVSINGQCTQAMTHVEAQQHII--GSGNTLTLQILR 109 (109)
Q Consensus 52 ~~~~V~~v~~~~~a~~~Gl~~-----------gD~I~~vng~~v~~~~~~~~~~~~~--~~~~~v~l~v~r 109 (109)
.++.|..+.+++||+++||++ ||.|+++||.++.++... ...+. ..+..+++++.|
T Consensus 251 ~Gv~V~~V~~~spA~~AGl~~~~~~~~~~l~~GDvI~~ing~~v~~~~dl--~~~l~~~~~g~~v~l~v~R 319 (348)
T 3qo6_A 251 SGVLVLDAPPSGPAGKAGLQSTKRDGYGRLVLGDIITSVNGTKVSNGSDL--YRILDQCKVGDEVTVEVLR 319 (348)
T ss_dssp SSEEEEECCSSSHHHHHTCCCCEECSSSCEECCCEECEETTBCCSSSHHH--HHHHTTCCTTCEEEEEEEC
T ss_pred ceEEEEEecCCChHHHcCCccccccccCCCCCCCEEEEECCEEeCCHHHH--HHHHHhCCCcCEEEEEEEE
Confidence 478899999999999999999 999999999999977443 34443 347899999876
No 195
>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation, binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4 b.47.1.1
Probab=98.53 E-value=3.3e-07 Score=62.05 Aligned_cols=55 Identities=25% Similarity=0.329 Sum_probs=45.0
Q ss_pred CCeEEEEECCCChhhhCCCCCCCEEEEECCEeCCCCCHHHHHHHHhCCCCeEEEEEEC
Q psy5188 52 TPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQILR 109 (109)
Q Consensus 52 ~~~~V~~v~~~~~a~~~Gl~~gD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~r 109 (109)
.++.|..|.+++||+++||++||.|+++||.++.++ .+....++. +..+.+++.|
T Consensus 256 ~gv~V~~V~~~spA~~aGl~~GDvI~~ing~~v~~~--~~l~~~l~~-~~~v~l~v~R 310 (325)
T 1lcy_A 256 HGVLIHKVILGSPAHRAGLRPGDVILAIGEQMVQNA--EDVYEAVRT-QSQLAVQIRR 310 (325)
T ss_dssp SCEEEEEECTTSHHHHHTCCTTCEEEEETTEECCSH--HHHHHHHTT-CSSEEEEEEE
T ss_pred CCeEEEEeCcCChHHHCCCCCCCEEEEECCEEcCCH--HHHHHHHhC-CCeEEEEEEE
Confidence 478999999999999999999999999999999864 444444544 5778888765
No 196
>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A
Probab=98.29 E-value=2.6e-07 Score=65.12 Aligned_cols=56 Identities=30% Similarity=0.453 Sum_probs=45.7
Q ss_pred CCeEEEEECCCChhhhCCCCCCCEEEEECCEeCCCCCHHHHHHHHh--CCCCeEEEEEEC
Q psy5188 52 TPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHII--GSGNTLTLQILR 109 (109)
Q Consensus 52 ~~~~V~~v~~~~~a~~~Gl~~gD~I~~vng~~v~~~~~~~~~~~~~--~~~~~v~l~v~r 109 (109)
.++.|..|.+++||+++||++||.|+++||.++.++.+. ...+. ..+..+.+++.|
T Consensus 286 ~G~~V~~V~~gspA~~AGL~~GDvI~~inG~~v~~~~~l--~~~l~~~~~g~~v~l~v~R 343 (448)
T 1ky9_A 286 RGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPISSFAAL--RAQVGTMPVGSKLTLGLLR 343 (448)
T ss_dssp CSEECCCCTTCSSSTTTTCCTTCEECBSSSSBCCSSHHH--HHHTTSSBTTCCCEEEEES
T ss_pred CceEEEEeccCCHHHHcCCCCCCEEEEECCEEcCCHHHH--HHHHHhcCCCCEEEEEEEE
Confidence 368889999999999999999999999999999977433 33443 357888888876
No 197
>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB: 3nzi_A 2ytw_A 2joa_A
Probab=98.18 E-value=2.1e-07 Score=63.08 Aligned_cols=55 Identities=31% Similarity=0.460 Sum_probs=0.0
Q ss_pred CCeEEEEECCCChhhhCCCCCCCEEEEECCEeCCCCCHHHHHHHHhCCCCeEEEEEEC
Q psy5188 52 TPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQILR 109 (109)
Q Consensus 52 ~~~~V~~v~~~~~a~~~Gl~~gD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~r 109 (109)
.++.|..|.+++||+++||++||.|+++||.++.++... ...++. +..+.+++.|
T Consensus 254 ~g~~V~~v~~~spA~~aGl~~GD~I~~ing~~v~~~~~~--~~~l~~-~~~v~l~v~R 308 (332)
T 3num_A 254 SGAYIIEVIPDTPAEAGGLKENDVIISINGQSVVSANDV--SDVIKR-ESTLNMVVRR 308 (332)
T ss_dssp ----------------------------------------------------------
T ss_pred CceEEEEeccCCChHHcCCCCCCEEEEECCEECCCHHHH--HHHHhC-CCeEEEEEEE
Confidence 367889999999999999999999999999999865433 233333 5667777655
No 198
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=98.03 E-value=2.4e-05 Score=59.62 Aligned_cols=66 Identities=15% Similarity=0.136 Sum_probs=51.0
Q ss_pred CCccEEEecccCCCCCeEEEEECCC--------ChhhhCC--CCCCCEEEEECCEeCCCCCHHHHHHHHh-CCCCeEEEE
Q psy5188 38 EAWGFRLTGGRDFGTPLTVLRVTGT--------SVAEEGG--MEVGDMIVSINGQCTQAMTHVEAQQHII-GSGNTLTLQ 106 (109)
Q Consensus 38 ~~~G~~~~~~~~~~~~~~V~~v~~~--------~~a~~~G--l~~gD~I~~vng~~v~~~~~~~~~~~~~-~~~~~v~l~ 106 (109)
.++|+.+.... ..+.|..+.++ +||+++| ++ ||+|++|||.++.++. +...+++ ..+..+.++
T Consensus 737 ~g~G~~~~~~~---~~~~v~~v~~~~~~~~~~~spa~~ag~~l~-GD~I~~i~g~~~~~~~--~~~~~~~~~~g~~v~l~ 810 (1045)
T 1k32_A 737 GRIACDFKLDG---DHYVVAKAYAGDYSNEGEKSPIFEYGIDPT-GYLIEDIDGETVGAGS--NIYRVLSEKAGTSARIR 810 (1045)
T ss_dssp CBCSEEEEEET---TEEEEEEECBSCTTSTTCBCGGGGGTCCCT-TCEEEEETTEECBTTB--CHHHHHHTTTTSEEEEE
T ss_pred ceecEEEEEeC---CEEEEEEecCCCcccccCCChHHHCCCCcC-CCEEEEECCEEccchh--hHHHhhcCCCCCEEEEE
Confidence 57887765322 25788899887 9999999 99 9999999999999775 3344454 458888888
Q ss_pred EEC
Q psy5188 107 ILR 109 (109)
Q Consensus 107 v~r 109 (109)
+.|
T Consensus 811 v~r 813 (1045)
T 1k32_A 811 LSG 813 (1045)
T ss_dssp EEC
T ss_pred EEC
Confidence 875
No 199
>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A
Probab=97.92 E-value=1.4e-06 Score=61.47 Aligned_cols=56 Identities=25% Similarity=0.352 Sum_probs=0.0
Q ss_pred CCeEEEEECCCChhhhCCCCCCCEEEEECCEeCCCCCHHHHHHHHhCCCCeEEEEEEC
Q psy5188 52 TPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQILR 109 (109)
Q Consensus 52 ~~~~V~~v~~~~~a~~~Gl~~gD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~r 109 (109)
.++.|..|.+++||+++||++||.|+++||.++.++. +....++.....+.+++.|
T Consensus 383 ~gv~V~~V~~gspA~~aGL~~GDiI~~vng~~v~~~~--~l~~~l~~~~~~v~l~v~R 438 (448)
T 1ky9_A 383 QGVVVNNVKTGTPAAQIGLKKGDVIIGANQQAVKNIA--ELRKVLDSKPSVLALNIQR 438 (448)
T ss_dssp ----------------------------------------------------------
T ss_pred CeEEEEEecCCCHHHHcCCCCCCEEEEECCEECCCHH--HHHHHHHcCCCeEEEEEEE
Confidence 3578899999999999999999999999999998653 3344455444466666654
No 200
>4fln_A Protease DO-like 2, chloroplastic; protease, DEG, PDZ, hydrolase; 2.80A {Arabidopsis thaliana}
Probab=97.89 E-value=3.4e-05 Score=55.57 Aligned_cols=57 Identities=26% Similarity=0.274 Sum_probs=43.6
Q ss_pred CCeEEEEECCCChhhhCCCCCCCEEEEECCEeCCCCCH--------HHHHHHH--hCCCCeEEEEEEC
Q psy5188 52 TPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTH--------VEAQQHI--IGSGNTLTLQILR 109 (109)
Q Consensus 52 ~~~~V~~v~~~~~a~~~Gl~~gD~I~~vng~~v~~~~~--------~~~~~~~--~~~~~~v~l~v~r 109 (109)
.++.|..|.+++||+++ |++||.|+++||.++.+... ......+ ...|..+.++|.|
T Consensus 277 ~Gv~V~~V~~~spA~~a-l~~GDvI~~idg~~V~~~g~~~~~~~~~~~l~~~v~~~~~Gd~v~l~v~R 343 (539)
T 4fln_A 277 EGVLVRRVEPTSDASKV-LKEGDVIVSFDDLHVGCEGTVPFRSSERIAFRYLISQKFAGDIAEIGIIR 343 (539)
T ss_dssp BCEEEEEECTTSGGGGT-CCTTCEEEEETTEECBSSSEEECSTTCEEETHHHHHTSCTTCEEEEEEEE
T ss_pred CceeeecccCCChHHhC-ccCCCEEEEECCEEeCcCCeeccccchhHHHHHHHHcCCCCCEEEEEEEE
Confidence 47999999999999876 99999999999999975321 0111223 3458999999876
No 201
>4fln_A Protease DO-like 2, chloroplastic; protease, DEG, PDZ, hydrolase; 2.80A {Arabidopsis thaliana}
Probab=97.88 E-value=0.00019 Score=51.72 Aligned_cols=102 Identities=10% Similarity=-0.019 Sum_probs=72.0
Q ss_pred eeeeeeeeeeeeeeeeecccceeeEEEEEEecCCC----------------CccEEEecc--------------------
Q psy5188 4 LRNYIWDLQFDILIQLILTKEVMCEELKLKKLECE----------------AWGFRLTGG-------------------- 47 (109)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~G~~~~~~-------------------- 47 (109)
|++++....++-++.+.+-+.....++++++.... ..|+.+..-
T Consensus 324 l~~~v~~~~~Gd~v~l~v~R~Gk~~~v~Vtl~~~~~~~~~~~~~~~p~~~~~~Gl~f~~Lt~~~~~~~~~~~~~~~l~~~ 403 (539)
T 4fln_A 324 FRYLISQKFAGDIAEIGIIRAGEHKKVQVVLRPRVHLVPYHIDGGQPSYIIVAGLVFTPLSEPLIEEECEDTIGLKLLTK 403 (539)
T ss_dssp THHHHHTSCTTCEEEEEEEETTEEEEEEEECBCCCCSSCSCTTSSCCCCCCSTTEEEEECCHHHHTTSCSSSSCHHHHHH
T ss_pred HHHHHHcCCCCCEEEEEEEECCEEEEEEEEEccCccccccccccCCCccccccceEEeeCCHHHHHhhcccccCceeeeh
Confidence 55566666777788888888888888888776421 135554310
Q ss_pred -------cCCCCCeEEEEECCCChhhhCCCCCCCEEEEECCEeCCCCCHHHHHHHHhCC-CCeEEEEE
Q psy5188 48 -------RDFGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGS-GNTLTLQI 107 (109)
Q Consensus 48 -------~~~~~~~~V~~v~~~~~a~~~Gl~~gD~I~~vng~~v~~~~~~~~~~~~~~~-~~~v~l~v 107 (109)
......+.|..|.+++++...|+++||.|++|||.+|.+.. +....++++ +..+.+.+
T Consensus 404 ~~~~~~~~~~~~gVvvs~V~~~s~a~~~g~~~gdiI~~vNg~~V~s~~--~l~~~l~~~k~~~l~~~~ 469 (539)
T 4fln_A 404 ARYSVARFRGEQIVILSQVLANEVNIGYEDMNNQQVLKFNGIPIRNIH--HLAHLIDMCKDKYLVFEF 469 (539)
T ss_dssp HHHCCCSSTTCCCEEEEEECCCGGGTTCSSCCSEEEEEETTEECCSHH--HHHHHHHTCCSSEEEEEE
T ss_pred hhhhhhccCCceEEEEEEecCCchhhhcCCCCCCEEEeECCEEcCCHH--HHHHHHHHcCCCeEEEEE
Confidence 01123688899999999999999999999999999999764 445666665 55555543
No 202
>3dor_A Protein CT_858, CPAF; mature CPAF, dimer, transferase; 2.20A {Chlamydia trachomatis} PDB: 3dpm_A* 3dpn_A 3dja_A
Probab=57.64 E-value=26 Score=25.72 Aligned_cols=30 Identities=20% Similarity=0.370 Sum_probs=21.2
Q ss_pred CeEEEEECCCChhhhCCCCCCCEEEEECCEeCCC
Q psy5188 53 PLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQA 86 (109)
Q Consensus 53 ~~~V~~v~~~~~a~~~Gl~~gD~I~~vng~~v~~ 86 (109)
.+.|..+.... +++..||+|++|||.++..
T Consensus 97 ~i~V~dv~~~~----s~I~vGdEIlsING~pv~e 126 (583)
T 3dor_A 97 RFYFVDIMTFS----SEIRVGDELLEVDGAPVQD 126 (583)
T ss_dssp CEEEEEECSSC----CSSCTTCEEEEETTEEHHH
T ss_pred cEEEEeccccc----cCCCCCCEEEEECCccHHH
Confidence 35665542221 2699999999999999963
No 203
>2j3t_D Trafficking protein particle complex subunit 4; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Homo sapiens} PDB: 2zmv_A 2jsn_A
Probab=24.35 E-value=60 Score=20.69 Aligned_cols=22 Identities=27% Similarity=0.563 Sum_probs=18.8
Q ss_pred hhCCCCCCCEEEEECCEeCCCC
Q psy5188 66 EEGGMEVGDMIVSINGQCTQAM 87 (109)
Q Consensus 66 ~~~Gl~~gD~I~~vng~~v~~~ 87 (109)
.+.|...|..++++||.++.+.
T Consensus 53 ~~d~~~~~~~~~~~ng~~~~~~ 74 (219)
T 2j3t_D 53 QRDGIRVGHAVLAINGMDVNGR 74 (219)
T ss_dssp CCTTCCTTCEEEEETTEECBTT
T ss_pred ccCCccccceeeecCCccCCCc
Confidence 3567999999999999999864
Done!