RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5188
(109 letters)
>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken
structural genomics/proteomics initiative, RSGI, unknown
function; NMR {Mus musculus} SCOP: b.36.1.1
Length = 103
Score = 102 bits (256), Expect = 4e-30
Identities = 28/70 (40%), Positives = 42/70 (60%)
Query: 40 WGFRLTGGRDFGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGS 99
WGFRL GG+DF PLT+ + A + + +GD+++SI+G Q MTH+EAQ I
Sbjct: 17 WGFRLQGGKDFNMPLTISSLKDGGKASQAHVRIGDVVLSIDGISAQGMTHLEAQNKIKAC 76
Query: 100 GNTLTLQILR 109
+L + + R
Sbjct: 77 TGSLNMTLQR 86
>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ
domain, cytoskeleton, actin binding, structural
genomics; NMR {Mus musculus} SCOP: b.36.1.1
Length = 103
Score = 102 bits (256), Expect = 4e-30
Identities = 31/70 (44%), Positives = 44/70 (62%)
Query: 40 WGFRLTGGRDFGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGS 99
WGFRL+GG DF PL + R+T S A + GD+I++I+G T++MTH +AQ I +
Sbjct: 17 WGFRLSGGIDFNQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESMTHADAQDRIKAA 76
Query: 100 GNTLTLQILR 109
L L+I R
Sbjct: 77 SYQLCLKIDR 86
>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, unknown function; NMR {Mus musculus}
SCOP: b.36.1.1
Length = 94
Score = 100 bits (252), Expect = 1e-29
Identities = 35/70 (50%), Positives = 45/70 (64%)
Query: 40 WGFRLTGGRDFGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGS 99
WGFR++GGRDF TP+ V +VT AE + GD+IV+INGQ + M H EAQ I S
Sbjct: 18 WGFRISGGRDFHTPIIVTKVTERGKAEAADLRPGDIIVAINGQSAENMLHAEAQSKIRQS 77
Query: 100 GNTLTLQILR 109
+ L LQ+ R
Sbjct: 78 ASPLRLQLDR 87
>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog,
phosphorylation, signaling PR LIM domain, PDZ domain;
1.5A {Homo sapiens}
Length = 88
Score = 99.3 bits (248), Expect = 4e-29
Identities = 29/70 (41%), Positives = 43/70 (61%)
Query: 40 WGFRLTGGRDFGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGS 99
WGFRL GG+DF PLT+ + A + + +GD+++SI+G Q MTH+EAQ I G
Sbjct: 15 WGFRLQGGKDFNMPLTISSLKDGGKAAQANVRIGDVVLSIDGINAQGMTHLEAQNKIKGC 74
Query: 100 GNTLTLQILR 109
+L + + R
Sbjct: 75 TGSLNMTLQR 84
>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 94
Score = 99.6 bits (249), Expect = 4e-29
Identities = 35/70 (50%), Positives = 44/70 (62%)
Query: 40 WGFRLTGGRDFGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGS 99
WGFRL GGRDF PLT+ RV S A + GD+I +ING+ T+ MTH+EAQ I G
Sbjct: 20 WGFRLVGGRDFSAPLTISRVHAGSKAALAALCPGDLIQAINGESTELMTHLEAQNRIKGC 79
Query: 100 GNTLTLQILR 109
+ LTL +
Sbjct: 80 HDHLTLSVSS 89
>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics,
structural genomics consort metal binding protein; 1.70A
{Homo sapiens} PDB: 3pdv_A
Length = 87
Score = 99.3 bits (248), Expect = 5e-29
Identities = 33/70 (47%), Positives = 45/70 (64%)
Query: 40 WGFRLTGGRDFGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGS 99
WGFR+TGGRDF TP+ V +V A++ + GD+IV+ING+ + M H EAQ I S
Sbjct: 14 WGFRITGGRDFHTPIMVTKVAERGKAKDADLRPGDIIVAINGESAEGMLHAEAQSKIRQS 73
Query: 100 GNTLTLQILR 109
+ L LQ+ R
Sbjct: 74 PSPLRLQLDR 83
>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural
genomics consortium, SGC; 1.11A {Homo sapiens}
Length = 89
Score = 99.3 bits (248), Expect = 5e-29
Identities = 31/70 (44%), Positives = 46/70 (65%)
Query: 40 WGFRLTGGRDFGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGS 99
WGFRL GG+DF PL++ R+T A + G+ VGD ++SI+G+ ++TH+EAQ I
Sbjct: 15 WGFRLQGGKDFNVPLSISRLTPGGKAAQAGVAVGDWVLSIDGENAGSLTHIEAQNKIRAC 74
Query: 100 GNTLTLQILR 109
G L+L + R
Sbjct: 75 GERLSLGLSR 84
>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere,
structural protein; NMR {Homo sapiens} SCOP: b.36.1.1
PDB: 1wjl_A
Length = 85
Score = 98.5 bits (246), Expect = 8e-29
Identities = 31/70 (44%), Positives = 45/70 (64%)
Query: 40 WGFRLTGGRDFGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGS 99
WGFRL GG+DF PLT+ R+T S A + + GD++V+I+G T MTH+EAQ I +
Sbjct: 13 WGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTMTHLEAQNKIKSA 72
Query: 100 GNTLTLQILR 109
L+L + +
Sbjct: 73 SYNLSLTLQK 82
>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics,
structural genomics consort unknown function; HET: PG4;
1.50A {Homo sapiens} PDB: 2v1w_A*
Length = 91
Score = 96.3 bits (240), Expect = 9e-28
Identities = 34/70 (48%), Positives = 45/70 (64%)
Query: 40 WGFRLTGGRDFGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGS 99
WGFRL GG+DF PL + RVT S A + +GD+I +I+G+ T MTH+EAQ I G
Sbjct: 15 WGFRLVGGKDFEQPLAISRVTPGSKAALANLCIGDVITAIDGENTSNMTHLEAQNRIKGC 74
Query: 100 GNTLTLQILR 109
+ LTL + R
Sbjct: 75 TDNLTLTVAR 84
>2edp_A Fragment, shroom family member 4; APX/shroom family member,
KIAA1202 protein, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 100
Score = 88.2 bits (219), Expect = 2e-24
Identities = 26/71 (36%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Query: 40 WGFRLTGGRDFGTPLTVLRVTGTSVAEE-GGMEVGDMIVSINGQCTQAMTHVEAQQHIIG 98
WGF L GG + PLTV ++ A M GD +V+ING + EA I G
Sbjct: 23 WGFTLKGGLEHCEPLTVSKIEDGGKAALSQKMRTGDELVNINGTPLY-GSRQEALILIKG 81
Query: 99 SGNTLTLQILR 109
S L L + R
Sbjct: 82 SFRILKLIVRR 92
>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, protein binding;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 128
Score = 83.7 bits (207), Expect = 2e-22
Identities = 22/82 (26%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 28 EELKLKKLECEAWGFRLTGGRDFGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAM 87
+++ L + + G + GG ++G + + V S AE G++VGD I+ +NG+ +
Sbjct: 22 KKVNLVLGDGRSLGLTIRGGAEYGLGIYITGVDPGSEAEGSGLKVGDQILEVNGRSFLNI 81
Query: 88 THVEAQQHIIGSGNTLTLQILR 109
H EA + ++ S L L +
Sbjct: 82 LHDEAVR-LLKSSRHLILTVKD 102
>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 100
Score = 82.0 bits (203), Expect = 4e-22
Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 29 ELKLKKLECEAWGFRLTGGRDFGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMT 88
++++K GF + GG + G + V +V S AE G+ VGD I +NG ++ T
Sbjct: 13 SVRVEKSPAGRLGFSVRGGSEHGLGIFVSKVEEGSSAERAGLCVGDKITEVNGLSLESTT 72
Query: 89 HVEAQQHIIGSGNTLTLQILR 109
A + ++ S + L + + R
Sbjct: 73 MGSAVK-VLTSSSRLHMMVRR 92
>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled
coil, deafness, hearing, non-syndromic deafness,
polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A
Length = 192
Score = 84.2 bits (208), Expect = 6e-22
Identities = 30/107 (28%), Positives = 51/107 (47%), Gaps = 1/107 (0%)
Query: 3 ALRNYIWDLQFDILIQLILTKEVMCEELKLKKLECEAWGFRLTGGRDFGTPLTVLRVTGT 62
A+R I QL + +E++L +L E G + GG +FG L + +
Sbjct: 61 AIRPLIPLKHQVEYDQLTPRRSRKLKEVRLDRLHPEGLGLSVRGGLEFGCGLFISHLIKG 120
Query: 63 SVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQILR 109
A+ G++VGD IV ING + TH E +I + T+++++
Sbjct: 121 GQADSVGLQVGDEIVRINGYSISSCTHEEVIN-LIRTEKTVSIKVRH 166
>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein
1; transferase, STRU genomics, structural genomics
consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo
sapiens}
Length = 112
Score = 75.9 bits (187), Expect = 2e-19
Identities = 28/71 (39%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 40 WGFRLTGGRDFGTPLTVLRVTGTSVAEE-GGMEVGDMIVSINGQCTQAMTHVEAQQHIIG 98
+GF L GGR++ L VLR+ AE G M +GD I+ ING+ T+ M H A + I
Sbjct: 37 FGFSLRGGREYNMDLYVLRLAEDGPAERSGKMRIGDEILEINGETTKNMKHSRAIELIKN 96
Query: 99 SGNTLTLQILR 109
G + L + R
Sbjct: 97 GGRRVRLFLKR 107
>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1
interacting protein 1, activin receptor interacting
protein 1; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 74.3 bits (183), Expect = 5e-19
Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 2/88 (2%)
Query: 23 KEVMCEELKLKKLECEAWGFRLTGGRDFGTPLTVLRVTGTSVAEE-GGMEVGDMIVSING 81
++ + ++K + +GF + GGR++ L VLR+ A G M VGD I+ ING
Sbjct: 8 QDFDYFTVDMEK-GAKGFGFSIRGGREYKMDLYVLRLAEDGPAIRNGRMRVGDQIIEING 66
Query: 82 QCTQAMTHVEAQQHIIGSGNTLTLQILR 109
+ T+ MTH A + I G + L + R
Sbjct: 67 ESTRDMTHARAIELIKSGGRRVRLLLKR 94
>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain,
ptpase, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: b.36.1.1
Length = 119
Score = 73.8 bits (181), Expect = 1e-18
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
Query: 31 KLKKLECEAWGFRLTGGRDFGTPLTVLRVTGTSVAE--EGGMEVGDMIVSINGQCTQAMT 88
++K E +GF + GG D P+ V RV + A+ + GD +V ING+ T
Sbjct: 20 RMKPDENGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHT 79
Query: 89 HVEAQQHIIGSGNTLTLQI 107
H + I S + ++
Sbjct: 80 HDQVVLFIKASCERHSGEL 98
>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling
protein; 1.80A {Mus musculus}
Length = 106
Score = 72.1 bits (177), Expect = 4e-18
Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 29 ELKLKKLECEAWGFRLTGGRDFGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMT 88
E KL K E + +GF L +D L + + S AE+ G+ GD ++ ING
Sbjct: 4 ESKLSKQEGQNYGFFLRIEKDTDGHL-IRVIEEGSPAEKAGLLDGDRVLRINGVFVDKEE 62
Query: 89 HVEAQQHIIGSGNTLTLQILR 109
H + + + SGN++TL +L
Sbjct: 63 HAQVVELVRKSGNSVTLLVLD 83
>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural
genomics/proteomics initiative, RSGI, unknown function;
NMR {Mus musculus} SCOP: b.36.1.1
Length = 104
Score = 71.6 bits (176), Expect = 5e-18
Identities = 18/79 (22%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Query: 31 KLKKLECEAWGFRLTGGRDFGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHV 90
LKK GF + GG+ + + +V S A G++ GD ++++N Q + H
Sbjct: 20 TLKKPPGAQLGFNIRGGKASQLGIFISKVIPDSDAHRAGLQEGDQVLAVNDVDFQDIEHS 79
Query: 91 EAQQHIIGSGNTLTLQILR 109
+A + I+ + +++++
Sbjct: 80 KAVE-ILKTAREISMRVRF 97
>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa,
Na/PI cotransporter C- terminal-associated protein,
NAPI-CAP1; NMR {Mus musculus}
Length = 114
Score = 71.3 bits (175), Expect = 9e-18
Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 29 ELKLKKLECEAWGFRLTGGRDFGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMT 88
E KL K E + +GF L +D L + + S AE+ G+ GD ++ ING
Sbjct: 16 ECKLSKQEGQNYGFFLRIEKDTDGHL-IRVIEEGSPAEKAGLLDGDRVLRINGVFVDKEE 74
Query: 89 HVEAQQHIIGSGNTLTLQILR 109
H + + + SGN++TL +L
Sbjct: 75 HAQVVELVRKSGNSVTLLVLD 95
>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, protein binding;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 101
Score = 70.5 bits (173), Expect = 1e-17
Identities = 22/66 (33%), Positives = 35/66 (53%)
Query: 40 WGFRLTGGRDFGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGS 99
GF + GG + G + V V S+AE+ G+ VGD I+ +N + +TH EA + + GS
Sbjct: 23 LGFSIRGGSEHGVGIYVSLVEPGSLAEKEGLRVGDQILRVNDKSLARVTHAEAVKALKGS 82
Query: 100 GNTLTL 105
+
Sbjct: 83 KKLVLS 88
>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase,
protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A
Length = 125
Score = 70.9 bits (174), Expect = 2e-17
Identities = 25/101 (24%), Positives = 45/101 (44%), Gaps = 2/101 (1%)
Query: 10 DLQFDILIQLILTKEVMCEELKLKKLECEAWGFRLTGGRDFGTPLTVLRVT-GTSVAEEG 68
DL +DI + L + ++ L+K G + GG + L +++V T A +G
Sbjct: 4 DLDYDIE-EDKLGIPTVPGKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDG 62
Query: 69 GMEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQILR 109
+ GD I +NG+ + T VE + I +T+ +
Sbjct: 63 TVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNK 103
>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural
genomics, structura genomics consortium, SGC, signaling
protein; 1.12A {Homo sapiens} PDB: 2pku_A
Length = 114
Score = 70.6 bits (173), Expect = 2e-17
Identities = 21/97 (21%), Positives = 41/97 (42%), Gaps = 6/97 (6%)
Query: 14 DILIQLILTKEVMCEELKLKKLECEAWGFRLTGGRDFGTPLTVLRVTGTSVAEE-GGMEV 72
++ Q ++ +V L+K G + GG + L +++V + A G +
Sbjct: 17 NLYFQSMVPGKV-----TLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAA 71
Query: 73 GDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQILR 109
GD I +NG+ + T VE + I +T+ +
Sbjct: 72 GDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNK 108
>2ego_A General receptor for phosphoinositides 1- associated scaffold
protein; PDZ domain, ligand-free, protein binding; 1.80A
{Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A
Length = 96
Score = 69.7 bits (171), Expect = 3e-17
Identities = 26/87 (29%), Positives = 38/87 (43%), Gaps = 7/87 (8%)
Query: 30 LKLKKLECEAWGFRLTGGR-------DFGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQ 82
L L+K + + +GF + V RV +S A+ G+ GD I S+NG
Sbjct: 8 LTLEKGDNQTFGFEIQTYGLHHREEQRVEMVTFVARVHESSPAQLAGLTPGDTIASVNGL 67
Query: 83 CTQAMTHVEAQQHIIGSGNTLTLQILR 109
+ + H E I SGN L L+ L
Sbjct: 68 NVEGIRHREIVDIIKASGNVLRLETLY 94
>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding
site complex, protein binding; 1.43A {Homo sapiens} PDB:
3nfl_A 2vph_A
Length = 107
Score = 69.5 bits (170), Expect = 5e-17
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
Query: 31 KLKKLECEAWGFRLTGGRDFGTPLTVLRVTGTSVAE--EGGMEVGDMIVSINGQCTQAMT 88
++K E +GF + GG D P+ V RV + A+ + GD +V ING+ T
Sbjct: 22 RMKPDENGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHT 81
Query: 89 HVEAQQHIIGSGNTLTLQI 107
H + I S + ++
Sbjct: 82 HDQVVLFIKASCERHSGEL 100
>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 104
Score = 68.1 bits (167), Expect = 1e-16
Identities = 30/73 (41%), Positives = 41/73 (56%), Gaps = 3/73 (4%)
Query: 40 WGFRLTGGRDFG--TPLTVLRVTGTSVAEE-GGMEVGDMIVSINGQCTQAMTHVEAQQHI 96
+G L GGRD TPL V + A+ G +EVGD+++ ING+ TQ +TH +A + I
Sbjct: 24 FGLTLGGGRDVAGDTPLAVRGLLKDGPAQRCGRLEVGDLVLHINGESTQGLTHAQAVERI 83
Query: 97 IGSGNTLTLQILR 109
G L L I R
Sbjct: 84 RAGGPQLHLVIRR 96
>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3,
microtubule associated serine/threonine kinase 3, PDZ
domain, structural genomics; 1.20A {Homo sapiens} PDB:
2w7r_A 2kqf_A 2kyl_A 3ps4_A
Length = 99
Score = 67.8 bits (166), Expect = 2e-16
Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 7/79 (8%)
Query: 38 EAWGFRLTGGRD-------FGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHV 90
+ +GF L R + V V S A+E G+ GD+I ING+ + H+
Sbjct: 13 KKYGFSLRAIRVYMGDSDVYTVHHVVWSVEDGSPAQEAGLRAGDLITHINGESVLGLVHM 72
Query: 91 EAQQHIIGSGNTLTLQILR 109
+ + ++ SGN ++L+
Sbjct: 73 DVVELLLKSGNKISLRTTA 91
>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo
sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A
Length = 91
Score = 67.3 bits (165), Expect = 2e-16
Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Query: 40 WGFRLTGGRDFGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGS 99
+GF L G + + V S AE+ G+ GD +V +NG+ + TH + I +
Sbjct: 16 YGFHLHGEKG-KLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAA 74
Query: 100 GNTLTLQILR 109
N + L ++
Sbjct: 75 LNAVRLLVVD 84
>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell
projection, disease mutation, membrane, phosphoprotein,
polymorphism; NMR {Homo sapiens}
Length = 216
Score = 69.8 bits (170), Expect = 3e-16
Identities = 18/70 (25%), Positives = 28/70 (40%), Gaps = 1/70 (1%)
Query: 40 WGFRLTGGRDFGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGS 99
+GF L + + V S AE G+ D IV +NG C + H + I
Sbjct: 22 YGFNLHSDKSKP-GQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQHGDVVSAIRAG 80
Query: 100 GNTLTLQILR 109
G+ L ++
Sbjct: 81 GDETKLLVVD 90
>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein;
structural protein-hydrolase complex, peptide binding
protei; NMR {Homo sapiens}
Length = 112
Score = 66.7 bits (163), Expect = 5e-16
Identities = 21/83 (25%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 27 CEELKLKKLECEAWGFRLTGGRDFGTPLTVLRVTGTSVAE-EGGMEVGDMIVSINGQCTQ 85
++ L K + E G +TGG++ G P+ + + A+ GG+ VGD I+++NG +
Sbjct: 28 IRKVLLLKEDHEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLR 87
Query: 86 AMTHVEAQQHIIGSGNTLTLQIL 108
H EA + + +++
Sbjct: 88 DTKHKEAVTILSQQRGEIEFEVV 110
>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform
B; GOPC PDZ domain, structural protein; NMR {Homo
sapiens}
Length = 103
Score = 65.8 bits (161), Expect = 1e-15
Identities = 21/82 (25%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query: 29 ELKLKKLECEAWGFRLTGGRDFGTPLTVLRVTGTSVAE-EGGMEVGDMIVSINGQCTQAM 87
++ L K + E G +TGG++ G P+ + + A+ GG+ VGD I+++NG +
Sbjct: 12 KVLLLKEDHEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDT 71
Query: 88 THVEAQQHIIGSGNTLTLQILR 109
H EA + + +++
Sbjct: 72 KHKEAVTILSQQRGEIEFEVVY 93
>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer,
membrane protein-oxidoreductase CO; 1.90A {Mus musculus}
SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A
Length = 90
Score = 65.4 bits (160), Expect = 1e-15
Identities = 21/83 (25%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 28 EELKLKKLECEAWGFRLTGGRDFGTPLTVLRVTGTSVAEE-GGMEVGDMIVSINGQCTQA 86
+ ++K + G + GGR+ P+ + ++ A++ + VGD I+S+NG+ +
Sbjct: 6 RRVTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSS 65
Query: 87 MTHVEAQQHIIGSGNTLTLQILR 109
TH EA Q + +G + L++
Sbjct: 66 ATHDEAVQALKKTGKEVVLEVKY 88
>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ
domain, PDZ2, acetylation, cell projection, membrane,
polymorphism; NMR {Homo sapiens}
Length = 98
Score = 65.4 bits (160), Expect = 1e-15
Identities = 18/69 (26%), Positives = 27/69 (39%), Gaps = 1/69 (1%)
Query: 41 GFRLTGGRDFGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGSG 100
GF L + + V S AE G+ D IV +NG C + H + I G
Sbjct: 23 GFNLHSDKSKP-GQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQHGDVVSAIRAGG 81
Query: 101 NTLTLQILR 109
+ L ++
Sbjct: 82 DETKLLVVD 90
>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3,
human, structural genomics, structural GE consortium,
SGC, signaling protein; 2.39A {Homo sapiens} SCOP:
b.36.1.1
Length = 91
Score = 65.1 bits (159), Expect = 1e-15
Identities = 15/70 (21%), Positives = 28/70 (40%), Gaps = 4/70 (5%)
Query: 40 WGFRLTGGRDFGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGS 99
+GF + P+ V V AE G++ D ++ +N + + VE I
Sbjct: 16 FGFTICCDS----PVRVQAVDSGGPAERAGLQQLDTVLQLNERPVEHWKCVELAHEIRSC 71
Query: 100 GNTLTLQILR 109
+ + L + R
Sbjct: 72 PSEIILLVWR 81
>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus}
Length = 102
Score = 65.5 bits (160), Expect = 2e-15
Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 40 WGFRLTGGRDFGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGS 99
+GF L G + + + S AE G++ D++V++NG+ +A+ H + I
Sbjct: 19 YGFYLRAGPE-QKGQIIKDIEPGSPAEAAGLKNNDLVVAVNGKSVEALDHDGVVEMIRKG 77
Query: 100 GNTLTLQILR 109
G+ TL +L
Sbjct: 78 GDQTTLLVLD 87
>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling
protein; NMR {Homo sapiens}
Length = 83
Score = 64.6 bits (158), Expect = 2e-15
Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 4/70 (5%)
Query: 40 WGFRLTGGRDFGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGS 99
+GF L+G P + V S A+ G+ GD I+++N + +H + + I
Sbjct: 15 YGFTLSGQA----PCVLSCVMRGSPADFVGLRAGDQILAVNEINVKKASHEDVVKLIGKC 70
Query: 100 GNTLTLQILR 109
L + I
Sbjct: 71 SGVLHMVIAE 80
>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, signaling protein; NMR {Mus musculus}
SCOP: b.36.1.1
Length = 100
Score = 65.1 bits (159), Expect = 2e-15
Identities = 15/70 (21%), Positives = 29/70 (41%), Gaps = 4/70 (5%)
Query: 40 WGFRLTGGRDFGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGS 99
+GF + +P+ V V AE G++ D ++ +N + + VE I
Sbjct: 28 FGFTICCD----SPVRVQAVDSGGPAERAGLQQLDTVLQLNERPVEHWKCVELAHEIRSC 83
Query: 100 GNTLTLQILR 109
+ + L + R
Sbjct: 84 PSEIILLVWR 93
>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 93
Score = 64.2 bits (157), Expect = 3e-15
Identities = 19/71 (26%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 40 WGFRLTGGRDFGTPLTVLRVTGTSVAEE-GGMEVGDMIVSINGQCTQAMTHVEAQQHIIG 98
GF + GG++ +P+ + RV VA+ GG++ GD ++S+NG + H +A + +
Sbjct: 18 LGFNIMGGKEQNSPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEGEQHEKAVELLKA 77
Query: 99 SGNTLTLQILR 109
+ ++ L +
Sbjct: 78 AQGSVKLVVRS 88
>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding protein;
PDZ domain, cytoplasm, membrane, polymorphism, protein
binding; 2.70A {Homo sapiens}
Length = 104
Score = 64.4 bits (157), Expect = 4e-15
Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 7/87 (8%)
Query: 29 ELKLKKLECEAWGFRLTGGRDFGTPLT-------VLRVTGTSVAEEGGMEVGDMIVSING 81
+ ++K + E +GF + R + ++ S A G++ GD++ +ING
Sbjct: 18 LVTVEKQDNETFGFEIQSYRPQNQNACSSEMFTLICKIQEDSPAHCAGLQAGDVLANING 77
Query: 82 QCTQAMTHVEAQQHIIGSGNTLTLQIL 108
T+ T+ + I SGN LT++ L
Sbjct: 78 VSTEGFTYKQVVDLIRSSGNLLTIETL 104
>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune
enteropathy-related antigen AIE-75 ,antigen
NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens}
SCOP: b.36.1.1 PDB: 2kbs_A
Length = 114
Score = 64.4 bits (157), Expect = 5e-15
Identities = 20/82 (24%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Query: 28 EELKLKKLECEAWGFRLTGGRDFGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAM 87
+++ + + G ++ G + + V S++ E G+E+GD IV +NG +
Sbjct: 17 KKVFISLVGSRGLGCSISSGPIQKPGIFISHVKPGSLSAEVGLEIGDQIVEVNGVDFSNL 76
Query: 88 THVEAQQHIIGSGNTLTLQILR 109
H EA + S + LT+ I+
Sbjct: 77 DHKEAVNVLKSSRS-LTISIVA 97
>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain,
adaptor protein, SR-BI, signaling protein; 1.30A {Mus
musculus} PDB: 3r69_A*
Length = 95
Score = 63.8 bits (156), Expect = 6e-15
Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 40 WGFRLTGGRDFGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGS 99
+GF L G + + + S AE G++ D++V++NG+ +A+ H + I
Sbjct: 18 YGFYLRAGPE-QKGQIIKDIEPGSPAEAAGLKNNDLVVAVNGKSVEALDHDGVVEMIRKG 76
Query: 100 GNTLTLQILR 109
G+ TL +L
Sbjct: 77 GDQTTLLVLD 86
>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated
protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 96
Score = 63.9 bits (156), Expect = 6e-15
Identities = 17/70 (24%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Query: 40 WGFRLTGGRDFGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGS 99
+GF ++ PLTV+ VT A G + GD I+ +N + + ++ A + +
Sbjct: 23 YGFHISESL----PLTVVAVTAGGSAH-GKLFPGDQILQMNNEPAEDLSWERAVDILREA 77
Query: 100 GNTLTLQILR 109
++L++ ++R
Sbjct: 78 EDSLSITVVR 87
>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus}
Length = 263
Score = 66.7 bits (162), Expect = 9e-15
Identities = 21/79 (26%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 32 LKKLECEAWGFRLTGGRDFGTPLTVLRVTGTSVAE-EGGMEVGDMIVSINGQCTQAMTHV 90
++K + G + GGR+ P+ + ++ A+ + VGD I+S+NG+ + TH
Sbjct: 83 VRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHD 142
Query: 91 EAQQHIIGSGNTLTLQILR 109
EA Q + +G + L++
Sbjct: 143 EAVQALKKTGKEVVLEVKY 161
>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3,
DLG3-human presynaptic protein, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.36.1.1
Length = 113
Score = 63.5 bits (155), Expect = 1e-14
Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 3/83 (3%)
Query: 28 EELKLKKLECEAWGFRLTGGRDFGTPLTVLRVTGTSVAE-EGGMEVGDMIVSINGQCTQA 86
++ L K GF + GG D G + V + A+ G + GD I+S+NG +
Sbjct: 17 RKIILHK-GSTGLGFNIVGGED-GEGIFVSFILAGGPADLSGELRRGDRILSVNGVNLRN 74
Query: 87 MTHVEAQQHIIGSGNTLTLQILR 109
TH +A + +G ++T+
Sbjct: 75 ATHEQAAAALKRAGQSVTIVAQY 97
>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm,
phosphoprotein, transport protein, CAsp; 2.60A {Homo
sapiens} PDB: 2eej_A
Length = 91
Score = 63.1 bits (154), Expect = 1e-14
Identities = 17/68 (25%), Positives = 27/68 (39%), Gaps = 1/68 (1%)
Query: 41 GFRLTGGRDFGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGSG 100
GF L R + V A+ G+E D+I+ +NG + + I SG
Sbjct: 17 GFHLNAIRG-LPGSFIKEVQKGGPADLAGLEDEDVIIEVNGVNVLDEPYEKVVDRIQSSG 75
Query: 101 NTLTLQIL 108
+TL +
Sbjct: 76 KNVTLLVC 83
>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain, structural
genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 114
Score = 63.2 bits (154), Expect = 1e-14
Identities = 22/91 (24%), Positives = 44/91 (48%), Gaps = 8/91 (8%)
Query: 27 CEELKLKKLECEAWGFRLTGGRD-------FGTPLTVLRVTGTSVAEE-GGMEVGDMIVS 78
++ + + E E +GF + + P + R+ S A+ ++VGD I++
Sbjct: 11 TSDVVIHRKENEGFGFVIISSLNRPESGSTITVPHKIGRIIDGSPADRCAKLKVGDRILA 70
Query: 79 INGQCTQAMTHVEAQQHIIGSGNTLTLQILR 109
+NGQ M H + + I +G ++TL+I+
Sbjct: 71 VNGQSIINMPHADIVKLIKDAGLSVTLRIIP 101
>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A
{Homo sapiens}
Length = 96
Score = 62.4 bits (152), Expect = 2e-14
Identities = 17/71 (23%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Query: 41 GFRLTGGRDFG--TPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIG 98
GF L + + V A++ GM+ GD +V++ G+ + + H E I G
Sbjct: 17 GFLLREEKGLDGRPGQFLWEVDPGLPAKKAGMQAGDRLVAVAGESVEGLGHEETVSRIQG 76
Query: 99 SGNTLTLQILR 109
G+ ++L ++
Sbjct: 77 QGSCVSLTVVD 87
>2eei_A PDZ domain-containing protein 1; regulatory factor, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 106
Score = 62.8 bits (153), Expect = 2e-14
Identities = 14/69 (20%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Query: 41 GFRLTGGRDFGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGSG 100
GF L + + + +T VA G+ D ++ +NG+ + +H E + + SG
Sbjct: 22 GFSLKTVQG-KKGVYMTDITPQGVAMRAGVLADDHLIEVNGENVEDASHEEVVEKVKKSG 80
Query: 101 NTLTLQILR 109
+ + ++
Sbjct: 81 SRVMFLLVD 89
>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two
alpha-helices, protein binding; NMR {Rattus norvegicus}
SCOP: b.36.1.1
Length = 91
Score = 62.0 bits (151), Expect = 2e-14
Identities = 19/77 (24%), Positives = 30/77 (38%), Gaps = 1/77 (1%)
Query: 33 KKLECEAWGFRLTGGRDFGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEA 92
K E +GF + G + V + + GG++ D ++ +N T+
Sbjct: 14 KDSGMEDFGFSVADGLL-EKGVYVKNIRPAGPGDLGGLKPYDRLLQVNHVRTRDFDCCLV 72
Query: 93 QQHIIGSGNTLTLQILR 109
I SGN L L I R
Sbjct: 73 VPLIAESGNKLDLVISR 89
>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ domain,
protein, acetylation, cell projection, disease mutation,
membrane; NMR {Homo sapiens}
Length = 128
Score = 62.6 bits (152), Expect = 4e-14
Identities = 18/69 (26%), Positives = 27/69 (39%), Gaps = 1/69 (1%)
Query: 41 GFRLTGGRDFGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGSG 100
GF L + + V S AE G+ D IV +NG C + H + I G
Sbjct: 23 GFNLHSDKSKP-GQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQHGDVVSAIRAGG 81
Query: 101 NTLTLQILR 109
+ L ++
Sbjct: 82 DETKLLVVD 90
>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation,
structural genomics, structural genomics consortium,
SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A
Length = 90
Score = 61.1 bits (149), Expect = 5e-14
Identities = 15/69 (21%), Positives = 26/69 (37%), Gaps = 1/69 (1%)
Query: 41 GFRLTGGRDFGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGSG 100
GF L + + V S A G+ D ++ +NGQ + + H E I
Sbjct: 18 GFNLHSDKS-RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKARE 76
Query: 101 NTLTLQILR 109
+ L ++
Sbjct: 77 DEARLLVVG 85
>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein
1; PDZ domain, ATP-binding, cell junction, cell
membrane; NMR {Homo sapiens} PDB: 2kpl_A
Length = 129
Score = 62.1 bits (151), Expect = 5e-14
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Query: 29 ELKLKKLECEAWGFRLTGGRDFGTPLTVLRVT-GTSVAEEGGMEVGDMIVSINGQCTQAM 87
KL+K +GF + GG + L + + A +G ME GD+IVS+N C
Sbjct: 21 HTKLRK-SSRGFGFTVVGGDEPDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGH 79
Query: 88 THVEAQQHI--IGSGNTLTLQILR 109
TH + + I G ++ L++ R
Sbjct: 80 THAQVVKIFQSIPIGASVDLELCR 103
>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ domain,
arhgef11, KIAA0380, structural genomics, NPPSFA; NMR
{Homo sapiens} PDB: 2omj_A 2os6_A
Length = 93
Score = 61.2 bits (149), Expect = 6e-14
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
Query: 40 WGFRLTGGRDFGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGS 99
+GF ++G R + V V A + G++ GD I+ +NG +H+E + +I S
Sbjct: 21 FGFTVSGDR----IVLVQSVRPGGAAMKAGVKEGDRIIKVNGTMVTNSSHLEVVK-LIKS 75
Query: 100 GNTLTLQILR 109
G + L +L
Sbjct: 76 GAYVALTLLG 85
>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken
structural genomics/proteomics initiative, RSGI, protein
binding; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 61.7 bits (150), Expect = 6e-14
Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Query: 31 KLKKLECEAWGFRLTGGRDFG-TPLTVLRVTGTSVAE-EGGMEVGDMIVSINGQCTQAMT 88
++ K A G LT + +T+ R+ SV + G + GD I+SI+G + +
Sbjct: 20 EIVKTPGSALGISLTTTSLRNKSVITIDRIKPASVVDRSGALHPGDHILSIDGTSMEHCS 79
Query: 89 HVEAQQHIIGSGNTLTLQILR 109
+EA + + + L+IL
Sbjct: 80 LLEATKLLASISEKVRLEILP 100
>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus
norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A
3o5n_A*
Length = 109
Score = 61.4 bits (149), Expect = 7e-14
Identities = 22/90 (24%), Positives = 38/90 (42%), Gaps = 12/90 (13%)
Query: 32 LKKLECEAWGFRLTGGRDFG------------TPLTVLRVTGTSVAEEGGMEVGDMIVSI 79
L+K + E +GF L G + + V VA G+ +GD ++ +
Sbjct: 13 LQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAGLRMGDFLIEV 72
Query: 80 NGQCTQAMTHVEAQQHIIGSGNTLTLQILR 109
NGQ + H + I GNTL ++++
Sbjct: 73 NGQNVVKVGHRQVVNMIRQGGNTLMVKVVM 102
>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide
binding protein; 1.54A {Rattus norvegicus} SCOP:
b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A
Length = 119
Score = 61.7 bits (150), Expect = 7e-14
Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Query: 41 GFRLTGGRDFGTPLTVLRVTGTSVAE-EGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGS 99
GF + GG D G + + + A+ G + GD I+S+NG + +H +A + +
Sbjct: 28 GFNIVGGED-GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNA 86
Query: 100 GNTLTLQILR 109
G T+T+
Sbjct: 87 GQTVTIIAQY 96
>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.36.1.1
Length = 110
Score = 61.2 bits (149), Expect = 7e-14
Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 6/75 (8%)
Query: 41 GFRLTGGRDFG------TPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQ 94
G + GG+ + + RV+ A G+ VGD ++ +NG Q H EA +
Sbjct: 29 GISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAGVRVGDKLLEVNGVALQGAEHHEAVE 88
Query: 95 HIIGSGNTLTLQILR 109
+ G+G + +++ R
Sbjct: 89 ALRGAGTAVQMRVWR 103
>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain, structural
genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 123
Score = 61.3 bits (149), Expect = 9e-14
Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 4/85 (4%)
Query: 28 EELKLKKLECEAWGFRLTGGRDFGTPLTVLRVT-GTSVAEEGGMEVGDMIVSINGQCTQA 86
LKK +GF + GG + L V V A++G ME GD+IV IN C
Sbjct: 21 LSTTLKK-SNMGFGFTIIGGDEPDEFLQVKSVIPDGPAAQDGKMETGDVIVYINEVCVLG 79
Query: 87 MTHVEAQQHI--IGSGNTLTLQILR 109
TH + + + G ++ L + R
Sbjct: 80 HTHADVVKLFQSVPIGQSVNLVLCR 104
>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus
interaction, structural genomics consortium,
synaptosome, tight junction; 1.7A {Homo sapiens} PDB:
2iwp_A
Length = 120
Score = 61.2 bits (149), Expect = 9e-14
Identities = 22/94 (23%), Positives = 46/94 (48%), Gaps = 4/94 (4%)
Query: 20 ILTKEVMCEELKLKKLECEAWGFRLTGGRD---FGTPLTVLRVTGTSVAEE-GGMEVGDM 75
+ + + +++KK ++ G + GG P+ + + T VA + + VGD
Sbjct: 18 LYFQSMGLRTVEMKKGPTDSLGISIAGGVGSPLGDVPIFIAMMHPTGVAAQTQKLRVGDR 77
Query: 76 IVSINGQCTQAMTHVEAQQHIIGSGNTLTLQILR 109
IV+I G T+ MTH +A + + ++ +Q++
Sbjct: 78 IVTICGTSTEGMTHTQAVNLLKNASGSIEMQVVA 111
>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil,
PDZ, guanine-nucleotide releasing factor,
phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Length = 132
Score = 61.5 bits (149), Expect = 9e-14
Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 12/90 (13%)
Query: 32 LKKLECEAWGFRLTGGRD------------FGTPLTVLRVTGTSVAEEGGMEVGDMIVSI 79
L+K + E +GF L G + F + V VA G+ +GD ++ +
Sbjct: 33 LQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAGLRMGDFLIEV 92
Query: 80 NGQCTQAMTHVEAQQHIIGSGNTLTLQILR 109
NGQ + H + I GNTL ++++
Sbjct: 93 NGQNVVKVGHRQVVNMIRQGGNTLMVKVVM 122
>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A
{Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A
Length = 97
Score = 60.8 bits (148), Expect = 1e-13
Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 41 GFRLTGGRDFGTPLTVLRVTGTSVAE-EGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGS 99
G ++G + P+ + +T +AE G + +GD I++IN + EA + +
Sbjct: 19 GITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMA 78
Query: 100 GNTLTLQILR 109
G T+TL+I +
Sbjct: 79 GETVTLKIKK 88
>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog;
PDZ domain, cellular signaling, structural genomics; NMR
{Mus musculus} SCOP: b.36.1.1
Length = 122
Score = 61.0 bits (148), Expect = 1e-13
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 5/84 (5%)
Query: 29 ELKLKKLECEAWGFRLTGGRD----FGTPLTVLRVTGTSVAE-EGGMEVGDMIVSINGQC 83
E+ L +G +L G +P + + S AE G +++GD +++ING
Sbjct: 18 EVVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIP 77
Query: 84 TQAMTHVEAQQHIIGSGNTLTLQI 107
T+ T EA Q + S T + +
Sbjct: 78 TEDSTFEEANQLLRDSSITSKVTL 101
>2fne_A Multiple PDZ domain protein; structural protein, structural
genomics, SGC, structural genomics consortium, unknown
function; 1.83A {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 60.8 bits (148), Expect = 1e-13
Identities = 25/87 (28%), Positives = 46/87 (52%), Gaps = 5/87 (5%)
Query: 27 CEELKLKKLECEAWGFRLTGGRDFG---TPLTVLRVT-GTSVAEEGGMEVGDMIVSINGQ 82
C+ + L++ + GF + GG P+ V V + +E+G ++ GD I+++NGQ
Sbjct: 26 CKSITLER-GPDGLGFSIVGGYGSPHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQ 84
Query: 83 CTQAMTHVEAQQHIIGSGNTLTLQILR 109
+ +TH EA + + T+TL +L
Sbjct: 85 SLEGVTHEEAVAILKRTKGTVTLMVLS 111
>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ
tandem, alternative splicing, cell junction, cytoplasm;
2.30A {Rattus norvegicus}
Length = 200
Score = 62.4 bits (152), Expect = 1e-13
Identities = 19/83 (22%), Positives = 33/83 (39%), Gaps = 1/83 (1%)
Query: 28 EELKLKKLECEAWGFRLTGGRDFGTPLTVLRVTGTSVAE-EGGMEVGDMIVSINGQCTQA 86
++L K E G ++GG D V + +A ++VGD I ++NG
Sbjct: 9 TVVELMKKEGTTLGLTVSGGIDKDGKPRVSNLRQGGIAARSDQLDVGDYIKAVNGINLAK 68
Query: 87 MTHVEAQQHIIGSGNTLTLQILR 109
H E + G + L++
Sbjct: 69 FRHDEIISLLKNVGERVVLEVEY 91
Score = 60.5 bits (147), Expect = 7e-13
Identities = 24/89 (26%), Positives = 37/89 (41%), Gaps = 6/89 (6%)
Query: 26 MCEELKLKKLECEAWGFRLTGGRDF----GTPLTVLRVTGTSVAEE-GGMEVGDMIVSIN 80
E+ L K E +GF + GG P+ + V A+ G ++ GD ++S++
Sbjct: 106 RTVEVTLHK-EGNTFGFVIRGGAHDDRNKSRPVVITCVRPGGPADREGTIKPGDRLLSVD 164
Query: 81 GQCTQAMTHVEAQQHIIGSGNTLTLQILR 109
G TH EA + G TL I
Sbjct: 165 GIRLLGTTHAEAMSILKQCGQEATLLIEY 193
>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.36.1.1
Length = 117
Score = 60.6 bits (147), Expect = 2e-13
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 41 GFRLTGGRDFGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGSG 100
G + G G + V +VT S+A + G+E GD ++ NG ++ T +A+ I
Sbjct: 33 GISIVSGEKGG--IYVSKVTVGSIAHQAGLEYGDQLLEFNGINLRSATEQQARLIIGQQC 90
Query: 101 NTLTLQILR 109
+T+T+
Sbjct: 91 DTITILAQY 99
>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 116
Score = 60.5 bits (147), Expect = 2e-13
Identities = 17/71 (23%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
Query: 41 GFRLTGGRDFG-TPLTVLRVTGTSVAE-EGGMEVGDMIVSINGQCTQAMTHVEAQQHIIG 98
G + GG+D + + V A +G + GD I+ +NG + +H EA +
Sbjct: 31 GLSIVGGKDTPLNAIVIHEVYEEGAAARDGRLWAGDQILEVNGVDLRNSSHEEAITALRQ 90
Query: 99 SGNTLTLQILR 109
+ + L + R
Sbjct: 91 TPQKVRLVVYR 101
>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain, structural
genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 60.0 bits (146), Expect = 2e-13
Identities = 19/84 (22%), Positives = 36/84 (42%), Gaps = 4/84 (4%)
Query: 29 ELKLKKLECEAWGFRLTGGRDFGTPLTVLRVT-GTSVAEEGGMEVGDMIVSINGQCTQAM 87
++ L++ +GFR+ GG + G P+ + V S +G + GD +V ++G
Sbjct: 12 DVHLRR-MESGFGFRILGGDEPGQPILIGAVIAMGSADRDGRLHPGDELVYVDGIPVAGK 70
Query: 88 THVEAQQHI--IGSGNTLTLQILR 109
TH + + L + R
Sbjct: 71 THRYVIDLMHHAARNGQVNLTVRR 94
>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 126
Score = 60.3 bits (146), Expect = 2e-13
Identities = 19/84 (22%), Positives = 32/84 (38%)
Query: 26 MCEELKLKKLECEAWGFRLTGGRDFGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQ 85
+ K E G + + + V +V A E G+ GD I+ +NG+
Sbjct: 35 SAIQFSYKDEENGNRGGKQRNRLEPMDTIFVKQVKEGGPAFEAGLCTGDRIIKVNGESVI 94
Query: 86 AMTHVEAQQHIIGSGNTLTLQILR 109
T+ + I S TL L ++
Sbjct: 95 GKTYSQVIALIQNSDTTLELSVMP 118
>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation,
leucine-rich repeat, alternative splicing, cytoplasm,
circletail, coiled coil; 1.30A {Homo sapiens}
Length = 97
Score = 59.6 bits (145), Expect = 2e-13
Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 6/75 (8%)
Query: 41 GFRLTGGRDFG------TPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQ 94
G + GG+ + + RV+ A G+ VGD ++ +NG Q H EA +
Sbjct: 17 GISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAGVRVGDKLLEVNGVALQGAEHHEAVE 76
Query: 95 HIIGSGNTLTLQILR 109
+ G+G + +++ R
Sbjct: 77 ALRGAGTAVQMRVWR 91
>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 124
Score = 60.1 bits (146), Expect = 3e-13
Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
Query: 41 GFRLTGGRDFG-TPLTVLRVT-GTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIG 98
G L G +D + V+ + A +G M +GD ++ IN Q +H A I
Sbjct: 39 GLSLAGNKDRSRMSIFVVGINPEGPAAADGRMRIGDELLEINNQILYGRSHQNASAIIKT 98
Query: 99 SGNTLTLQILR 109
+ + + L +R
Sbjct: 99 APSKVKLVFIR 109
>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP:
b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A
Length = 82
Score = 58.9 bits (143), Expect = 3e-13
Identities = 16/77 (20%), Positives = 27/77 (35%), Gaps = 7/77 (9%)
Query: 32 LKKLECEAWGFRLTGGRDFGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVE 91
+ K GF G+ + + S A G+ I INGQ + +
Sbjct: 10 MHKDSTGHVGFIFKNGK-------ITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQ 62
Query: 92 AQQHIIGSGNTLTLQIL 108
+ SG +T+ I+
Sbjct: 63 IADILSTSGTVVTITIM 79
>2jil_A GRIP1 protein, glutamate receptor interacting protein-1;
endoplasmic reticulum, postsynaptic membrane, membrane,
MEMB protein; 1.5A {Homo sapiens}
Length = 97
Score = 59.2 bits (144), Expect = 4e-13
Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 6/86 (6%)
Query: 29 ELKLKKLECEAWGFRLTGGRDF----GTPLTVLRVTGTSVAE-EGGMEVGDMIVSINGQC 83
E+ L K E +GF + GG P+ + V A+ EG ++ GD ++S++G
Sbjct: 6 EVTLHK-EGNTFGFVIRGGAHDDRNKSRPVVITSVRPGGPADREGTIKPGDRLLSVDGIR 64
Query: 84 TQAMTHVEAQQHIIGSGNTLTLQILR 109
TH EA + G L I
Sbjct: 65 LLGTTHAEAMSILKQCGQEAALLIEY 90
>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural
genomics, riken structural genomics/proteomics
initiative, unknown function; NMR {Homo sapiens} SCOP:
b.36.1.1
Length = 110
Score = 59.3 bits (144), Expect = 4e-13
Identities = 16/87 (18%), Positives = 32/87 (36%), Gaps = 5/87 (5%)
Query: 27 CEELKLKKLECEAWGFRLTGGRDFG---TPLTVLRVTGTSVAEE-GGMEVGDMIVSINGQ 82
++L++ G L G L + + S A G + +GD I+ +NG
Sbjct: 9 VFTVELER-GPSGLGMGLIDGMHTHLGAPGLYIQTLLPGSPAAADGRLSLGDRILEVNGS 67
Query: 83 CTQAMTHVEAQQHIIGSGNTLTLQILR 109
+ ++ A I G + + +
Sbjct: 68 SLLGLGYLRAVDLIRHGGKKMRFLVAK 94
>2eaq_A LIM domain only protein 7; conserved hypothetical protein,
structural genomics, NPPSFA; 1.46A {Homo sapiens}
Length = 90
Score = 59.0 bits (143), Expect = 4e-13
Identities = 16/82 (19%), Positives = 31/82 (37%), Gaps = 5/82 (6%)
Query: 30 LKLKKLECEAWGFRLTGGRDFGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTH 89
+ + +GF + + V V S AE ++V D I++IN
Sbjct: 9 INQTPGKSLDFGFTIKWDIP---GIFVASVEAGSPAEFSQLQVDDEIIAINNTKFSYNDS 65
Query: 90 VEAQQHIIGSGNT--LTLQILR 109
E ++ + + T L + + R
Sbjct: 66 KEWEEAMAKAQETGHLVMDVRR 87
>3qe1_A Sorting nexin-27, G protein-activated inward RECT potassium channel
3 chimera; PDZ domain, PDZ binding, GIRK3 regulation,
early endosomes; 1.68A {Rattus norvegicus} PDB: 3qdo_A
3qgl_A
Length = 107
Score = 58.9 bits (143), Expect = 6e-13
Identities = 20/81 (24%), Positives = 28/81 (34%), Gaps = 12/81 (14%)
Query: 41 GFRLTGGRDFGTPLT------------VLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMT 88
GF + G G L V V A+ G+ GD I+ +NG + T
Sbjct: 20 GFNVRGQVSEGGQLRSINGELYAPLQHVSAVLPGGAADRAGVRKGDRILEVNGVNVEGAT 79
Query: 89 HVEAQQHIIGSGNTLTLQILR 109
H + I L L +L
Sbjct: 80 HKQVVDLIRAGEKELILTVLS 100
>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing
protein 1; PDZ, E6 binding, tumor suppressor, peptide
binding protein; 2.15A {Mus musculus}
Length = 85
Score = 58.0 bits (141), Expect = 6e-13
Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 4/84 (4%)
Query: 29 ELKLKKLECEAWGFRLTGGRDFGTPLTVLRVTGTSVAEE-GGMEVGDMIVSINGQCTQAM 87
KL+K +GF + GG + L + + A G ME GD+IVS+N C
Sbjct: 3 HTKLRK-SSRGFGFTVVGGDEPDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGH 61
Query: 88 THVEAQQHI--IGSGNTLTLQILR 109
TH + + I G ++ L++ R
Sbjct: 62 THAQVVKIFQSIPIGASVDLELCR 85
>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein
1; Cys Ser mutant, S genomics consortium, SGC,
transferase; 2.00A {Homo sapiens}
Length = 90
Score = 58.4 bits (142), Expect = 6e-13
Identities = 16/85 (18%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
Query: 28 EELKLKKLECEAWGFRLTGGRDFGTPLTVLRVT-GTSVAEEGGMEVGDMIVSINGQCTQA 86
+++ L + + +GFR+ GG + G P+ + + + +G + GD ++S++G
Sbjct: 4 QDIFLWR-KETGFGFRILGGNEPGEPIYIGHIVPLGAADTDGRLRSGDELISVDGTPVIG 62
Query: 87 MTHVEAQQHI--IGSGNTLTLQILR 109
+H Q + + L + +
Sbjct: 63 KSHQLVVQLMQQAAKQGHVNLTVRQ 87
>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding;
2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A
1u37_A 1u38_A 2yt8_A
Length = 388
Score = 61.9 bits (149), Expect = 7e-13
Identities = 20/94 (21%), Positives = 37/94 (39%), Gaps = 7/94 (7%)
Query: 16 LIQLILTKEVMCEELKLKKLECEAWGFRLTGGRDFGTPLTVLRVTGTSVAEEGGMEVGDM 75
+ I++ + L + GF + G + + +AE GG+ VG
Sbjct: 286 VKLNIVSCPPVTTVLIKRPDLKYQLGFSVQNG-------IICSLMRGGIAERGGVRVGHR 338
Query: 76 IVSINGQCTQAMTHVEAQQHIIGSGNTLTLQILR 109
I+ INGQ A H + Q + S + ++ +
Sbjct: 339 IIEINGQSVVATAHEKIVQALSNSVGEIHMKTMP 372
Score = 46.1 bits (108), Expect = 3e-07
Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 5/88 (5%)
Query: 26 MCEELKLKKLECEAWGFRLTGGRDFGTPLTVLRVT----GTSVAEEGGMEVGDMIVSING 81
C+EL+L+K + E G + +G+ L + + G A G + +GD I+SING
Sbjct: 204 NCKELQLEKHKGEILGVVVVESG-WGSILPTVILANMMNGGPAARSGKLSIGDQIMSING 262
Query: 82 QCTQAMTHVEAQQHIIGSGNTLTLQILR 109
+ Q I G N +++
Sbjct: 263 TSLVGLPLATCQGIIKGLKNQTQVKLNI 290
>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high
affinity ligand, cell adhesio; 1.60A {Homo sapiens} PDB:
2h2c_A 2h3m_A 2rrm_A
Length = 107
Score = 58.5 bits (142), Expect = 7e-13
Identities = 21/88 (23%), Positives = 35/88 (39%), Gaps = 7/88 (7%)
Query: 28 EELKLKKLECEAWGFRLTGGRDFG------TPLTVLRVTGTSVAEEGGMEVGDMIVSING 81
+ L + +G ++GGRD T + + V AE G ++ D + +NG
Sbjct: 9 HTVTLHRAPGFGFGIAISGGRDNPHFQSGETSIVISDVLKGGPAE-GQLQENDRVAMVNG 67
Query: 82 QCTQAMTHVEAQQHIIGSGNTLTLQILR 109
+ H A Q + SG + I R
Sbjct: 68 VSMDNVEHAFAVQQLRKSGKNAKITIRR 95
>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 111
Score = 58.2 bits (141), Expect = 1e-12
Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Query: 41 GFRLTGGRDFGTPLTVLRVTGTSVAE-EGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGS 99
GF + GG+ + + V + +A+ +G ++ GD I+ I G Q MT + Q +
Sbjct: 29 GFGIVGGKT--SGVVVRTIVPGGLADRDGRLQTGDHILKIGGTNVQGMTSEQVAQVLRNC 86
Query: 100 GNTLTLQILR 109
GN++ + + R
Sbjct: 87 GNSVRMLVAR 96
>3i4w_A Disks large homolog 4; alpha and beta protein, alternative
splicing, cell junction, cell membrane, lipoprotein,
membrane, palmitate, phosphoprotein; 1.35A {Homo
sapiens} PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A
Length = 104
Score = 57.7 bits (140), Expect = 2e-12
Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Query: 41 GFRLTGGRDFGTPLTVLRVTGTSVAEE-GGMEVGDMIVSINGQCTQAMTHVEAQQHIIGS 99
GF + GG G + + + A+ G + GD I+S+NG + +H +A + +
Sbjct: 25 GFNIVGGEX-GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNA 83
Query: 100 GNTLTLQILR 109
G T+T+
Sbjct: 84 GQTVTIIAQY 93
>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion;
1.99A {Homo sapiens} PDB: 3shu_A
Length = 124
Score = 57.9 bits (140), Expect = 2e-12
Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 3/83 (3%)
Query: 28 EELKLKKLE-CEAWGFRLTGGRDFGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQA 86
+KL K ++ G RL GG D G + V V S A + G+E GD I+ +N
Sbjct: 28 PSMKLVKFRKGDSVGLRLAGGNDVG--IFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTN 85
Query: 87 MTHVEAQQHIIGSGNTLTLQILR 109
+ EA ++ + IL
Sbjct: 86 IIREEAVLFLLDLPKGEEVTILA 108
>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90,
GLUR6, cell juncti membrane, lipoprotein, membrane,
palmitate, phosphoprotein; 2.05A {Rattus norvegicus}
PDB: 3zrt_A 2ka9_A
Length = 196
Score = 59.4 bits (144), Expect = 2e-12
Identities = 14/75 (18%), Positives = 35/75 (46%), Gaps = 6/75 (8%)
Query: 41 GFRLTGGRDF-----GTPLTVLRVTGTSVAEE-GGMEVGDMIVSINGQCTQAMTHVEAQQ 94
GF + GG + V ++ A + G +++GD I+++N + + H +A
Sbjct: 114 GFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVA 173
Query: 95 HIIGSGNTLTLQILR 109
+ + + + L++ +
Sbjct: 174 ALKNTYDVVYLKVAK 188
Score = 57.8 bits (140), Expect = 7e-12
Identities = 20/88 (22%), Positives = 41/88 (46%), Gaps = 7/88 (7%)
Query: 28 EELKLKKLECEAWGFRLTGGRD-----FGTPLTVLRVTGTSVAE-EGGMEVGDMIVSING 81
EE+ L++ GF + GG D + + ++ A +G + V D I+ +N
Sbjct: 7 EEITLER-GNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNE 65
Query: 82 QCTQAMTHVEAQQHIIGSGNTLTLQILR 109
+ +TH A + + +G+ + L ++R
Sbjct: 66 VDVREVTHSAAVEALKEAGSIVRLYVMR 93
>2opg_A Multiple PDZ domain protein; structural protein, structural
genomics, structural genomics consortium, SGC; 1.50A
{Homo sapiens}
Length = 98
Score = 57.3 bits (139), Expect = 2e-12
Identities = 17/71 (23%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
Query: 41 GFRLTGGRDFG-TPLTVLRVT-GTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIG 98
G + GG D + + V + ++G + GD I+ +NG + TH EA +
Sbjct: 18 GLSIVGGSDTLLGAIIIHEVYEEGAACKDGRLWAGDQILEVNGIDLRKATHDEAINVLRQ 77
Query: 99 SGNTLTLQILR 109
+ + L + R
Sbjct: 78 TPQRVRLTLYR 88
>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor
(LCF), structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: b.36.1.2
Length = 119
Score = 57.8 bits (140), Expect = 2e-12
Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 41 GFRLTGGRDF-GTPLTVLRVTGTSVAE-EGGMEVGDMIVSINGQCTQAMTHVEAQQHIIG 98
GF L GG D +TV RV +A EG ++ G+ ++SING+ + TH +A +
Sbjct: 30 GFSLAGGADLENKVITVHRVFPNGLASQEGTIQKGNEVLSINGKSLKGTTHHDALAILRQ 89
Query: 99 SGNTLTLQILR 109
+ I+
Sbjct: 90 AREPRQAVIVT 100
>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain,
intracellular signaling cascade, signal transduction;
NMR {Mus musculus} SCOP: b.36.1.1
Length = 111
Score = 57.5 bits (139), Expect = 2e-12
Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 5/71 (7%)
Query: 40 WGFRLTGGRDFGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGS 99
GF L G TP+ V + A G + GD IVSI G + +T E + +
Sbjct: 28 LGFTLRGN----TPVQVHFLDPHCSASLAGAKEGDYIVSIQGVDCKWLTVSEVMKLLKSF 83
Query: 100 G-NTLTLQILR 109
G + ++++
Sbjct: 84 GGEEVEMKVVS 94
>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger,
oxidoreductase; 1.25A {Rattus norvegicus} SCOP: b.36.1.1
PDB: 1qav_B
Length = 112
Score = 57.5 bits (139), Expect = 2e-12
Identities = 14/82 (17%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
Query: 29 ELKLKKLECEAWGFRLTGGRDFGTPLTVLRVTGTSVAEE-GGMEVGDMIVSINGQCTQAM 87
++L K + GF + P+ + + AE+ G ++ GD+I+++N + +
Sbjct: 4 SVRLFKRKVGGLGFLVKERVS-KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDL 62
Query: 88 THVEAQQHIIGSGNTLTLQILR 109
++ A + + G + + ++
Sbjct: 63 SYDSALEVLRGIASETHVVLIL 84
>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Mus musculus} SCOP: b.36.1.1
Length = 117
Score = 57.4 bits (139), Expect = 3e-12
Identities = 24/94 (25%), Positives = 42/94 (44%), Gaps = 9/94 (9%)
Query: 24 EVMCEEL--KLKKLECEAWGFRLTGGRDFG------TPLTVLRVTGTSVAEEGGMEVGDM 75
EV+ E+ L+K +G ++GGRD T + + V A+ G ++ D
Sbjct: 10 EVIWEQYTVTLQKDSKRGFGIAVSGGRDNPHFENGETSIVISDVLPGGPAD-GLLQENDR 68
Query: 76 IVSINGQCTQAMTHVEAQQHIIGSGNTLTLQILR 109
+V +NG + + H A Q + SG + + R
Sbjct: 69 VVMVNGTPMEDVLHSFAVQQLRKSGKIAAIVVKR 102
>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane,
HOST- interaction, structural genomics consortium,
synaptosome, T junction; 1.80A {Homo sapiens}
Length = 123
Score = 57.5 bits (139), Expect = 3e-12
Identities = 20/92 (21%), Positives = 40/92 (43%), Gaps = 10/92 (10%)
Query: 28 EELKLKKLECEAWGFRLTGGRDFGT---------PLTVLRVTGTSVAE-EGGMEVGDMIV 77
++L + ++ G + GGR G+ + + V S A G ++ GD IV
Sbjct: 26 RRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIV 85
Query: 78 SINGQCTQAMTHVEAQQHIIGSGNTLTLQILR 109
++G + +H +A + I +GN + +
Sbjct: 86 EVDGMDLRDASHEQAVEAIRKAGNPVVFMVQS 117
>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR
{Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A
1vj6_A 1gm1_A 1ozi_A
Length = 96
Score = 56.8 bits (138), Expect = 3e-12
Identities = 18/73 (24%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
Query: 41 GFRLTGGRDFG---TPLTVLRVTGTSVAEE-GGMEVGDMIVSINGQCTQAMTHVEAQQHI 96
G +TGG + + V V AE G + GD ++++NG + TH +A + +
Sbjct: 19 GISVTGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETL 78
Query: 97 IGSGNTLTLQILR 109
+G + L + +
Sbjct: 79 RNTGQVVHLLLEK 91
>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 114
Score = 57.0 bits (137), Expect = 4e-12
Identities = 19/90 (21%), Positives = 36/90 (40%), Gaps = 1/90 (1%)
Query: 20 ILTKEVMCEELKLKKLECEAWGFRLTGGRDFG-TPLTVLRVTGTSVAEEGGMEVGDMIVS 78
I K ++ + +GF L+ + G L V V T +A + G++ GD I+
Sbjct: 11 ICPKVTQSIHIEKSDTAADTYGFSLSSVEEDGIRRLYVNSVKETGLASKKGLKAGDEILE 70
Query: 79 INGQCTQAMTHVEAQQHIIGSGNTLTLQIL 108
IN + A+ + + L ++
Sbjct: 71 INNRAADALNSSMLKDFLSQPSLGLLVRTY 100
>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 117
Score = 57.1 bits (138), Expect = 4e-12
Identities = 17/89 (19%), Positives = 36/89 (40%), Gaps = 10/89 (11%)
Query: 31 KLKKLECEAWGFRLTGGRDFGT---------PLTVLRVTGTSVAE-EGGMEVGDMIVSIN 80
++ + + G + GG+ + + +V S A ++ GD I+ ++
Sbjct: 20 EIFREPNVSLGISIVGGQTVIKRLKNGEELKGIFIKQVLEDSPAGKTNALKTGDKILEVS 79
Query: 81 GQCTQAMTHVEAQQHIIGSGNTLTLQILR 109
G Q +H EA + I +GN + +
Sbjct: 80 GVDLQNASHSEAVEAIKNAGNPVVFIVQS 108
>2o2t_A Multiple PDZ domain protein; structural protein, structural
genomics, structural genomics consortium, SGC; 2.70A
{Homo sapiens}
Length = 117
Score = 56.6 bits (137), Expect = 5e-12
Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 5/87 (5%)
Query: 28 EELKLKKLECEAWGFRLTGGRDFGT---PLTVLRVTGTSVAEE-GGMEVGDMIVSINGQC 83
E +L K GF + G R + V + SVA G ++ D I++INGQ
Sbjct: 22 EVFELLKPPSGGLGFSVVGLRSENRGELGIFVQEIQEGSVAHRDGRLKETDQILAINGQA 81
Query: 84 -TQAMTHVEAQQHIIGSGNTLTLQILR 109
Q +TH +A + + +T+ L I R
Sbjct: 82 LDQTITHQQAISILQKAKDTVQLVIAR 108
>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction,
membrane, phosphoprot domain, tight junction,
transmembrane; 2.40A {Homo sapiens}
Length = 92
Score = 56.2 bits (136), Expect = 5e-12
Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 7/78 (8%)
Query: 33 KKLECEAWGFRLTGGRDFGTPLTVLRVTGTSVAE-EGGMEVGDMIVSINGQCTQAMTHVE 91
K + E +G RL + V ++ S+A +G ++ GD+++ ING T+ M+ +
Sbjct: 10 KSAKNEEYGLRLASH------IFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTD 63
Query: 92 AQQHIIGSGNTLTLQILR 109
A+ I S L + + R
Sbjct: 64 AKTLIERSKGKLKMVVQR 81
>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem
repeats, scaffold protein, protein binding; NMR {Rattus
norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A
Length = 196
Score = 58.2 bits (141), Expect = 5e-12
Identities = 24/97 (24%), Positives = 43/97 (44%), Gaps = 8/97 (8%)
Query: 18 QLILTKEVMCEELKLKKLECEAWGFRLTGGRDF----GTPLTVLRVTGTSVAE-EGGMEV 72
Q++ T+ E+ L +G +L G +P + + S AE G +++
Sbjct: 1 QVVHTETT---EVVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQI 57
Query: 73 GDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQILR 109
GD +++ING T+ T EA Q + S T + +
Sbjct: 58 GDRVMAINGIPTEDSTFEEANQLLRDSSITSKVTLEI 94
Score = 57.9 bits (140), Expect = 8e-12
Identities = 20/84 (23%), Positives = 39/84 (46%), Gaps = 3/84 (3%)
Query: 29 ELKLKKLECEAWGFRLTGG--RDFGTPLTVLRVTGTSVAEE-GGMEVGDMIVSINGQCTQ 85
+KL K G ++ R G PL + + SVA G +E+GD +++I+
Sbjct: 110 HVKLPKKHSVELGITISSPSSRKPGDPLVISDIKKGSVAHRTGTLELGDKLLAIDNIRLD 169
Query: 86 AMTHVEAQQHIIGSGNTLTLQILR 109
+ + +A Q + + + L+I +
Sbjct: 170 SCSMEDAVQILQQCEDLVKLKIRK 193
>2xkx_A Disks large homolog 4; structural protein, scaffold protein,
membrane associated GU kinase; 22.9A {Rattus norvegicus}
Length = 721
Score = 59.5 bits (143), Expect = 5e-12
Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
Query: 36 ECEAWGFRLTGGRDFGTPLTVLRVTGTSVAE-EGGMEVGDMIVSINGQCTQAMTHVEAQQ 94
GF + GG D G + + + A+ G + GD I+S+NG + +H +A
Sbjct: 316 GSTGLGFNIVGGED-GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAI 374
Query: 95 HIIGSGNTLTLQILR 109
+ +G T+T+
Sbjct: 375 ALKNAGQTVTIIAQY 389
Score = 59.1 bits (142), Expect = 9e-12
Identities = 21/92 (22%), Positives = 43/92 (46%), Gaps = 7/92 (7%)
Query: 24 EVMCEELKLKKLECEAWGFRLTGGRDF-----GTPLTVLRVTGTSVAE-EGGMEVGDMIV 77
E+ EE+ L++ GF + GG D + + ++ A +G + V D I+
Sbjct: 57 EMEYEEITLER-GNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSIL 115
Query: 78 SINGQCTQAMTHVEAQQHIIGSGNTLTLQILR 109
+N + +TH A + + +G+ + L ++R
Sbjct: 116 FVNEVDVREVTHSAAVEALKEAGSIVRLYVMR 147
Score = 43.0 bits (100), Expect = 4e-06
Identities = 14/78 (17%), Positives = 36/78 (46%), Gaps = 6/78 (7%)
Query: 38 EAWGFRLTGGRD-----FGTPLTVLRVTGTSVAE-EGGMEVGDMIVSINGQCTQAMTHVE 91
+ GF + GG + V ++ A +G +++GD I+++N + + H +
Sbjct: 165 KGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHED 224
Query: 92 AQQHIIGSGNTLTLQILR 109
A + + + + L++ +
Sbjct: 225 AVAALKNTYDVVYLKVAK 242
>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker,
structural genomics, struc genomics consortium, SGC,
structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 56.2 bits (136), Expect = 6e-12
Identities = 20/92 (21%), Positives = 40/92 (43%), Gaps = 10/92 (10%)
Query: 28 EELKLKKLECEAWGFRLTGGRDFGT---------PLTVLRVTGTSVAE-EGGMEVGDMIV 77
++L + ++ G + GGR G+ + + V S A G ++ GD IV
Sbjct: 6 RRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIV 65
Query: 78 SINGQCTQAMTHVEAQQHIIGSGNTLTLQILR 109
++G + +H +A + I +GN + +
Sbjct: 66 EVDGMDLRDASHEQAVEAIRKAGNPVVFMVQS 97
>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric
oxide synthase, oxidoreductase; NMR {Rattus norvegicus}
SCOP: b.36.1.1
Length = 127
Score = 56.8 bits (137), Expect = 7e-12
Identities = 14/82 (17%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
Query: 29 ELKLKKLECEAWGFRLTGGRDFGTPLTVLRVTGTSVAEE-GGMEVGDMIVSINGQCTQAM 87
++L K + GF + P+ + + AE+ G ++ GD+I+++N + +
Sbjct: 11 SVRLFKRKVGGLGFLVKERVS-KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDL 69
Query: 88 THVEAQQHIIGSGNTLTLQILR 109
++ A + + G + + ++
Sbjct: 70 SYDSALEVLRGIASETHVVLIL 91
>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane
protein 25, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 120
Score = 56.3 bits (136), Expect = 8e-12
Identities = 20/75 (26%), Positives = 38/75 (50%), Gaps = 6/75 (8%)
Query: 41 GFRLTGGRDFG-----TPLTVLRVT-GTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQ 94
GF + GG D + + V R+ + A +G ++ GD I+S+NGQ + + H +A
Sbjct: 31 GFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVD 90
Query: 95 HIIGSGNTLTLQILR 109
+G ++L++
Sbjct: 91 LFRNAGYAVSLRVQH 105
>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural
genomics, structural GEN consortium, SGC, structural
protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1
PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A
Length = 94
Score = 55.4 bits (134), Expect = 9e-12
Identities = 14/75 (18%), Positives = 36/75 (48%), Gaps = 6/75 (8%)
Query: 41 GFRLTGGRDF-----GTPLTVLRVTGTSVAEE-GGMEVGDMIVSINGQCTQAMTHVEAQQ 94
GF + GG + + ++ A++ G +++GD ++++N Q + H EA
Sbjct: 17 GFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVA 76
Query: 95 HIIGSGNTLTLQILR 109
+ + + + L++ +
Sbjct: 77 SLKNTSDMVYLKVAK 91
>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.36.1.1
Length = 105
Score = 55.4 bits (134), Expect = 1e-11
Identities = 20/76 (26%), Positives = 32/76 (42%), Gaps = 7/76 (9%)
Query: 41 GFRLTGGRDFG------TPLTVLRVTGTSVAE-EGGMEVGDMIVSINGQCTQAMTHVEAQ 93
GF + GG+ + V R+ A G ++VGD ++SING H A
Sbjct: 21 GFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGDRVLSINGVDVTEARHDHAV 80
Query: 94 QHIIGSGNTLTLQILR 109
+ + T+ L + R
Sbjct: 81 SLLTAASPTIALLLER 96
>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight
junction protein, protein associated to tight junctions,
PATJ, structural genomics; NMR {Homo sapiens}
Length = 128
Score = 55.5 bits (134), Expect = 2e-11
Identities = 19/87 (21%), Positives = 37/87 (42%), Gaps = 5/87 (5%)
Query: 28 EELKLKKLECEAWGFRLTGGRDFGT---PLTVLRVTGTSVAEE-GGMEVGDMIVSINGQC 83
E + +++ GF + R + V V SVA+ ++ D I++IN
Sbjct: 27 EYIDIERPSTGGLGFSVVALRSQNLGKVDIFVKDVQPGSVADRDQRLKENDQILAINHTP 86
Query: 84 -TQAMTHVEAQQHIIGSGNTLTLQILR 109
Q ++H +A + + +L L + R
Sbjct: 87 LDQNISHQQAIALLQQTTGSLRLIVAR 113
>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 55.2 bits (133), Expect = 2e-11
Identities = 14/75 (18%), Positives = 28/75 (37%), Gaps = 6/75 (8%)
Query: 41 GFRLTGGRDFG-----TPLTVLRVTGTSVAEE-GGMEVGDMIVSINGQCTQAMTHVEAQQ 94
G R+ GG++ + ++ AE+ G + G ++ NG + T+ E Q
Sbjct: 33 GIRIVGGKEIPGHSGEIGAYIAKILPGGSAEQTGKLMEGMQVLEWNGIPLTSKTYEEVQS 92
Query: 95 HIIGSGNTLTLQILR 109
I + +
Sbjct: 93 IISQQSGEAEICVRL 107
>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus
interaction, structural genomics consortium,
synaptosome, tight junction; 1.35A {Homo sapiens}
Length = 97
Score = 54.6 bits (132), Expect = 2e-11
Identities = 18/74 (24%), Positives = 37/74 (50%), Gaps = 5/74 (6%)
Query: 41 GFRLTGGRDFGT----PLTVLRVTGTSVAEE-GGMEVGDMIVSINGQCTQAMTHVEAQQH 95
G + G + V +T +S E G +++GD I++++G Q T+ +A +
Sbjct: 18 GITIAGYIGDKKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEV 77
Query: 96 IIGSGNTLTLQILR 109
+ +G T+ L ++R
Sbjct: 78 LRHTGQTVLLTLMR 91
>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction,
membrane, phosphorylati domain, protein binding; 1.70A
{Homo sapiens} PDB: 2jwe_A 2osg_A
Length = 81
Score = 54.2 bits (131), Expect = 2e-11
Identities = 18/79 (22%), Positives = 38/79 (48%), Gaps = 10/79 (12%)
Query: 41 GFRLTGGRD---------FGTPLTVLRVTGTSVAE-EGGMEVGDMIVSINGQCTQAMTHV 90
G ++T + + + V ++ S+A +G ++ GD+++ ING T+ M+
Sbjct: 1 GSKVTLVKSRKNEEYGLRLASHIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLT 60
Query: 91 EAQQHIIGSGNTLTLQILR 109
+A+ I S L + + R
Sbjct: 61 DAKTLIERSKGKLKMVVQR 79
>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain,
scaffolding protein signaling protein; 1.56A {Homo
sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A
1obz_A 1w9o_A 1w9q_A 1ybo_A
Length = 166
Score = 56.4 bits (136), Expect = 2e-11
Identities = 20/82 (24%), Positives = 34/82 (41%), Gaps = 4/82 (4%)
Query: 29 ELKLKKLECEAWGFRLTGGRDFGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMT 88
E+ L K + G RL + V V S A G+ GD ++ ING+ +
Sbjct: 7 EVILCKDQDGKIGLRLKSI---DNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWS 63
Query: 89 HVEAQQHIIGS-GNTLTLQILR 109
+A + + + G +T+ I
Sbjct: 64 SDKAHKVLKQAFGEKITMTIRD 85
Score = 47.1 bits (112), Expect = 6e-08
Identities = 17/92 (18%), Positives = 30/92 (32%), Gaps = 7/92 (7%)
Query: 17 IQLILTKEVMCEELKLKKLECEAWGFRLTGGRDFGTPLTVLRVTGTSVAEEGGMEVGDMI 76
I + + + + K GF G+ + S A G+ I
Sbjct: 79 ITMTIRDRPFERTITMHKDSTGHVGFIFKNGKITS-------IVKDSSAARNGLLTEHNI 131
Query: 77 VSINGQCTQAMTHVEAQQHIIGSGNTLTLQIL 108
INGQ + + + SG +T+ I+
Sbjct: 132 CEINGQNVIGLKDSQIADILSTSGTVVTITIM 163
>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding, protein-binding,
RHOB, nitration, cytoplasm, PDZ domain, CAsp8; 1.82A
{Homo sapiens}
Length = 109
Score = 54.8 bits (132), Expect = 2e-11
Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 5/69 (7%)
Query: 41 GFRLTGGRDFGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGSG 100
GF L G P+ V + A G GD IVSI + +T E + + G
Sbjct: 37 GFTLRGNA----PVQVHFLDPYCSASVAGAREGDYIVSIQLVDCKWLTLSEVMKLLKSFG 92
Query: 101 -NTLTLQIL 108
+ + ++++
Sbjct: 93 EDEIEMKVV 101
>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 129
Score = 55.5 bits (134), Expect = 2e-11
Identities = 18/94 (19%), Positives = 41/94 (43%), Gaps = 6/94 (6%)
Query: 22 TKEVMCEELKLKKLECEAWGFRLTGGRDFG-----TPLTVLRVTGTSVAEE-GGMEVGDM 75
+ ++L + + ++ G R+ G + + V V S A G ++V D
Sbjct: 11 SSLFETYNVELVRKDGQSLGIRIVGYVGTSHTGEASGIYVKSVIPGSAAYHNGHIQVNDK 70
Query: 76 IVSINGQCTQAMTHVEAQQHIIGSGNTLTLQILR 109
IV+++G Q + + + + +G + L ++R
Sbjct: 71 IVAVDGVNIQGFANHDVVEVLRNAGQVVHLTLVR 104
>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain,
structural genomics, structural genom consortium, SGC,
phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 55.1 bits (133), Expect = 2e-11
Identities = 20/96 (20%), Positives = 44/96 (45%), Gaps = 7/96 (7%)
Query: 20 ILTKEVMCEELKLKKLECEAWGFRLTGGRDF-----GTPLTVLRVTGTSVAEE-GGMEVG 73
+ + + E+KL K + GF + GG + V ++ A++ G ++VG
Sbjct: 18 LYFQSMTVVEIKLFK-GPKGLGFSIAGGVGNQHIPGDNSIYVTKIIDGGAAQKDGRLQVG 76
Query: 74 DMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQILR 109
D ++ +N + +TH EA + + + L++ +
Sbjct: 77 DRLLMVNNYSLEEVTHEEAVAILKNTSEVVYLKVGK 112
>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, protein binding;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 54.7 bits (132), Expect = 2e-11
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Query: 41 GFRLTGGRDFGTPL-TVLRVT-GTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIG 98
G + GG + PL ++ + G S G ++VG +I+ +NG + H EA + I
Sbjct: 20 GIAIEGGANTRQPLPRIVTIQRGGSAHNCGQLKVGHVILEVNGLTLRGKEHREAARIIAE 79
Query: 99 SGNTLTLQILR 109
+ T +
Sbjct: 80 AFKTKDRDYID 90
>2awx_A Synapse associated protein 97; membrane protein, synaptic
signaling, trafficking protein; HET: HIS; 1.80A {Rattus
norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A
Length = 105
Score = 54.7 bits (132), Expect = 3e-11
Identities = 15/75 (20%), Positives = 36/75 (48%), Gaps = 6/75 (8%)
Query: 41 GFRLTGGRDF-----GTPLTVLRVTGTSVAEE-GGMEVGDMIVSINGQCTQAMTHVEAQQ 94
GF + GG + V ++ A + G +++GD ++++N + +TH EA
Sbjct: 17 GFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVSLEEVTHEEAVT 76
Query: 95 HIIGSGNTLTLQILR 109
+ + + + L++ +
Sbjct: 77 ALKNTSDFVYLKVAK 91
>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor,
PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2
Length = 130
Score = 55.2 bits (133), Expect = 3e-11
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 5/74 (6%)
Query: 41 GFRLTGGRDFG---TPLTVLRVTGTSVAEE-GGMEVGDMIVSINGQCTQAMTHVEAQQHI 96
GF L GG+ PLT+ R+ + +E+ ++ GD I+ + G Q +T EA I
Sbjct: 43 GFSLEGGKGSLHGDKPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNII 102
Query: 97 IGSGN-TLTLQILR 109
+ +T+ I R
Sbjct: 103 KALPDGPVTIVIRR 116
>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter
usage, alternative splicing, cell junction, cell
membrane, disease mutation; 1.75A {Homo sapiens}
Length = 88
Score = 53.9 bits (130), Expect = 3e-11
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 51 GTPLTVLRVTGTSVAE-EGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQILR 109
G+ + V +T T +A +G + GD+I+ ING T+ M+ +A++ I S L L +LR
Sbjct: 20 GSQIFVKEMTRTGLATKDGNLHEGDIILKINGTVTENMSLTDARKLIEKSRGKLQLVVLR 79
>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 111
Score = 54.7 bits (132), Expect = 3e-11
Identities = 24/93 (25%), Positives = 41/93 (44%), Gaps = 10/93 (10%)
Query: 27 CEELKLKKLECEAWGFRLTGGRDFGT---------PLTVLRVTGTSVAE-EGGMEVGDMI 76
EL ++K E G + GG + + +V+ T A +G + VG +
Sbjct: 10 LRELCIQKAPGERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLRVGLRL 69
Query: 77 VSINGQCTQAMTHVEAQQHIIGSGNTLTLQILR 109
+ +N Q +TH EA Q + G+TLT+ +
Sbjct: 70 LEVNQQSLLGLTHGEAVQLLRSVGDTLTVLVCD 102
>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane,
mitochondria distribution, PDZ, membrane, scaffold,
mitochondrion, membrane protein; 1.35A {Homo sapiens}
PDB: 2jin_A
Length = 101
Score = 54.3 bits (131), Expect = 4e-11
Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 7/88 (7%)
Query: 28 EELKLKKLECEAWGFRLTGGRDFG-----TPLTVLRVT-GTSVAEEGGMEVGDMIVSING 81
EE+ L + GF + GG D + + V R+ + A +G ++ GD I+S+NG
Sbjct: 9 EEINLTR-GPSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNG 67
Query: 82 QCTQAMTHVEAQQHIIGSGNTLTLQILR 109
Q + + H +A +G ++L++
Sbjct: 68 QDLKNLLHQDAVDLFRNAGYAVSLRVQH 95
>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1; copper
chaperone for superoxide dismutase, neuronal adaptor,
protein transport; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 90
Score = 54.0 bits (130), Expect = 4e-11
Identities = 17/79 (21%), Positives = 31/79 (39%), Gaps = 7/79 (8%)
Query: 30 LKLKKLECEAWGFRLTGGRDFGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTH 89
L + GF + G + + +AE GG+ VG I+ INGQ A H
Sbjct: 16 LIRRPDLRYQLGFSVQNG-------IICSLMRGGIAERGGVRVGHRIIEINGQSVVATPH 68
Query: 90 VEAQQHIIGSGNTLTLQIL 108
+ + + + ++ +
Sbjct: 69 EKIVHILSNAVGEIHMKTM 87
>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction,
structural genom structural genomics consortium, SGC,
signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A
3rl7_B 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A
Length = 102
Score = 54.3 bits (131), Expect = 4e-11
Identities = 15/75 (20%), Positives = 31/75 (41%), Gaps = 6/75 (8%)
Query: 41 GFRLTGGRDF-----GTPLTVLRVTGTSVA-EEGGMEVGDMIVSINGQCTQAMTHVEAQQ 94
GF + GG D + + ++ A +G + V D ++ +N + H A +
Sbjct: 18 GFSIAGGIDNPHVPDDPGIFITKIIPGGAAAMDGRLGVNDCVLRVNEVDVSEVVHSRAVE 77
Query: 95 HIIGSGNTLTLQILR 109
+ +G + L + R
Sbjct: 78 ALKEAGPVVRLVVRR 92
>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics,
PDZ domain, riken structural genomics/proteomics
initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB:
2koh_A 2k1z_A 2k20_A
Length = 127
Score = 54.4 bits (131), Expect = 5e-11
Identities = 19/100 (19%), Positives = 42/100 (42%), Gaps = 12/100 (12%)
Query: 22 TKEVMCEELKLKKLECEAWGFRLTGGRDFGT----PLTVLRVT-GTSVAEEGGMEVGDMI 76
+ E + E+ L G L G + T + + + G + ++G + + D +
Sbjct: 21 SSEQLTLEIPLNDSGSAGLGVSLKGNKSRETGTDLGIFIKSIIHGGAAFKDGRLRMNDQL 80
Query: 77 VSINGQCTQAMTHVEAQQHIIGSGN-------TLTLQILR 109
+++NG+ ++ EA + + S + + L ILR
Sbjct: 81 IAVNGETLLGKSNHEAMETLRRSMSMEGNIRGMIQLVILR 120
>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic
domain associated protein, structural genomics; NMR
{Homo sapiens} SCOP: b.36.1.1
Length = 107
Score = 53.6 bits (129), Expect = 6e-11
Identities = 22/90 (24%), Positives = 43/90 (47%), Gaps = 10/90 (11%)
Query: 29 ELKLKKLECEAWGFRLTGGRDFG--------TPLTVLRVTGTSVA-EEGGMEVGDMIVSI 79
L L + + + GF + GGR + V ++ + A +EGG+++ D I+ +
Sbjct: 11 TLVLHR-DSGSLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRIIEV 69
Query: 80 NGQCTQAMTHVEAQQHIIGSGNTLTLQILR 109
NG+ TH +A + + + +Q+LR
Sbjct: 70 NGRDLSRATHDQAVEAFKTAKEPIVVQVLR 99
>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti
density, glutametergic receptors, carbohydrate
metabolism, cycle, cell division; HET: MES; 1.85A
{Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A
Length = 170
Score = 55.0 bits (132), Expect = 7e-11
Identities = 15/76 (19%), Positives = 29/76 (38%), Gaps = 7/76 (9%)
Query: 41 GFRLTGGRDFG------TPLTVLRVT-GTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQ 93
G + G + V VT G + +G ++V D++V ++G +T A
Sbjct: 94 GISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAA 153
Query: 94 QHIIGSGNTLTLQILR 109
+ + + I R
Sbjct: 154 SVLRNTKGRVRFMIGR 169
>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1
protein, structural genomics, riken structural
genomics/proteomics initiative; NMR {Mus musculus} SCOP:
b.36.1.1
Length = 113
Score = 53.6 bits (129), Expect = 7e-11
Identities = 16/84 (19%), Positives = 33/84 (39%), Gaps = 4/84 (4%)
Query: 27 CEELKLKKLECEAWGFRLTGGRDFGTPLTVLRVTGTSVAEE-GGMEVGDMIVSINGQCTQ 85
+ ++++K G + D + + R+ AE+ G + GD ++ ING +
Sbjct: 26 VKIVRIEKARDIPLGATVRNEMD---SVIISRIVKGGAAEKSGLLHEGDEVLEINGIEIR 82
Query: 86 AMTHVEAQQHIIGSGNTLTLQILR 109
E + TLT ++
Sbjct: 83 GKDVNEVFDLLSDMHGTLTFVLIP 106
>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding,
nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens}
PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A
Length = 139
Score = 54.3 bits (130), Expect = 8e-11
Identities = 25/104 (24%), Positives = 44/104 (42%), Gaps = 13/104 (12%)
Query: 19 LILTKEVMCEEL-KLKKLECEAWGFRLTGGRDFG------------TPLTVLRVTGTSVA 65
L V E+ KL++ E GF + GG D + V RV+ A
Sbjct: 18 LYFQSMVQRVEIHKLRQGENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPA 77
Query: 66 EEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQILR 109
E G+++GD I+ +NG +TH +A++ + + ++
Sbjct: 78 EIAGLQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLLVT 121
>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein;
1.80A {Drosophila melanogaster} SCOP: b.36.1.1
Length = 98
Score = 53.1 bits (128), Expect = 9e-11
Identities = 20/86 (23%), Positives = 36/86 (41%), Gaps = 7/86 (8%)
Query: 31 KLKKLECEAWGFRLTGGRDFGTPLT------VLRVTGTSVAEE-GGMEVGDMIVSINGQC 83
L K +++G + G +P T + + S A G ++VGD I+S+NG+
Sbjct: 10 TLDKTGKKSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKD 69
Query: 84 TQAMTHVEAQQHIIGSGNTLTLQILR 109
+ T I + + L+I
Sbjct: 70 VRNSTEQAVIDLIKEADFKIELEIQT 95
>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ,
cell junction, cell adhesion, signaling protein,
nucleotide exchange factor; 1.30A {Homo sapiens} PDB:
3kze_A
Length = 94
Score = 52.7 bits (126), Expect = 1e-10
Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Query: 38 EAWGFRLTGGRDFG-TPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHI 96
+ +GF L+ + G L V V T +A + G++ GD I+ IN + A+ + +
Sbjct: 20 DTYGFSLSSVEEDGIRRLYVNSVKETGLASKKGLKAGDEILEINNRAADALNSSMLKDFL 79
Query: 97 IGSGNTLTL 105
L +
Sbjct: 80 SQPSLGLLV 88
>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic}
Length = 108
Score = 52.7 bits (127), Expect = 1e-10
Identities = 21/92 (22%), Positives = 43/92 (46%), Gaps = 7/92 (7%)
Query: 24 EVMCEELKLKKLECEAWGFRLTGGRD-----FGTPLTVLRVT-GTSVAEEGGMEVGDMIV 77
+ EL +K + + G ++G RD T + V + G++ A +G +E D I+
Sbjct: 12 SLYSVELFREK-DTSSLGISISGMRDQSTTGEATGIYVKSLIPGSAAALDGRIEPNDKIL 70
Query: 78 SINGQCTQAMTHVEAQQHIIGSGNTLTLQILR 109
++ Q M + + + +GN + L ++R
Sbjct: 71 RVDDVNVQGMAQSDVVEVLRNAGNPVRLLLIR 102
>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane
protein; NMR {Homo sapiens} PDB: 2ev8_A
Length = 97
Score = 52.4 bits (126), Expect = 1e-10
Identities = 17/84 (20%), Positives = 36/84 (42%), Gaps = 3/84 (3%)
Query: 27 CEELKLKKLECEAWGFRLTGGRDFGTPLTVLRVTGTSVAE-EGGMEVGDMIVSINGQCTQ 85
++ +K+ E G L TV R+ + +G + VGD I+ ING
Sbjct: 13 VRLIQFEKVTEEPMGICLKLNEK--QSCTVARILHGGMIHRQGSLHVGDEILEINGTNVT 70
Query: 86 AMTHVEAQQHIIGSGNTLTLQILR 109
+ + Q+ + + ++L+++
Sbjct: 71 NHSVDQLQKAMKETKGMISLKVIP 94
>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain,
RAB3-interacting molecule, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.36.1.1 PDB: 2css_A 1zub_A
Length = 131
Score = 53.3 bits (128), Expect = 2e-10
Identities = 18/95 (18%), Positives = 43/95 (45%), Gaps = 6/95 (6%)
Query: 18 QLILTKEVMCEELKLKKLECEAWGFRLTGGRDFGT---PLTVLRVTGTSVAEE-GGMEVG 73
+++L K + ++ + + G ++ GG+ + + +V S+A+ G + G
Sbjct: 30 RILLNKRL--KDGSVPRDSGAMLGLKVVGGKMTESGRLCAFITKVKKGSLADTVGHLRPG 87
Query: 74 DMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQIL 108
D ++ NG+ Q T E I+ S ++++
Sbjct: 88 DEVLEWNGRLLQGATFEEVYNIILESKPEPQVELV 122
>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics,
structural genomics consortium, SGC, signaling protein;
1.40A {Homo sapiens}
Length = 92
Score = 52.2 bits (126), Expect = 2e-10
Identities = 20/82 (24%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
Query: 29 ELKLKKLECEAWGFRLTGGRDFGTPLTVLRVT-GTSVAEEGGMEVGDMIVSINGQCTQAM 87
+ L+K + G + G R+ T + V + G +G + GD I+ +NG+ +
Sbjct: 7 TIGLQKKPGKGLGLSIVGKRN-DTGVFVSDIVKGGIADADGRLMQGDQILMVNGEDVRNA 65
Query: 88 THVEAQQHIIGSGNTLTLQILR 109
T + S T+TL++ R
Sbjct: 66 TQEAVAALLKCSLGTVTLEVGR 87
>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural
genomics, structural genomics consortium, SGC,
metal-binding; 1.75A {Homo sapiens}
Length = 118
Score = 52.8 bits (127), Expect = 2e-10
Identities = 17/86 (19%), Positives = 44/86 (51%), Gaps = 4/86 (4%)
Query: 28 EELKLKKLECEAWGFRLTGGRDFG---TPLTVLRVT-GTSVAEEGGMEVGDMIVSINGQC 83
+ + ++K E+ G + GG P+ V+ V G ++ +G ++ GD++++++G
Sbjct: 26 KVVNIQKDPGESLGMTVAGGASHREWDLPIYVISVEPGGVISRDGRIKTGDILLNVDGVE 85
Query: 84 TQAMTHVEAQQHIIGSGNTLTLQILR 109
++ EA + + +++ L+ L
Sbjct: 86 LTEVSRSEAVALLKRTSSSIVLKALE 111
>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics
consortium, SGC, protein BIN; 1.30A {Homo sapiens}
Length = 93
Score = 52.0 bits (125), Expect = 2e-10
Identities = 17/72 (23%), Positives = 29/72 (40%), Gaps = 2/72 (2%)
Query: 38 EAWGFRLTGGRDFGTPLTVLRVTGTSVAEE-GGMEVGDMIVSINGQCTQAMTHVEAQQHI 96
E G + G + V R+ A+ G + VGD + +NG + E Q +
Sbjct: 15 EPLGATIKKDEQTG-AIIVARIMRGGAADRSGLIHVGDELREVNGIPVEDKRPEEIIQIL 73
Query: 97 IGSGNTLTLQIL 108
S +T +I+
Sbjct: 74 AQSQGAITFKII 85
>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal
peptide complex, high affnity ligand, signaling protein;
NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A
Length = 103
Score = 52.0 bits (125), Expect = 3e-10
Identities = 22/97 (22%), Positives = 41/97 (42%), Gaps = 9/97 (9%)
Query: 21 LTKEVMCEELKLKKLECEAWGFRLTGGRDFG--------TPLTVLRVTGTSVAEEGGMEV 72
+ E+ +E++++ + GF ++GG + V RV A ++
Sbjct: 4 MGHELAKQEIRVRVEKDPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPAS-KLLQP 62
Query: 73 GDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQILR 109
GD I+ NG + H +A + NT+ L I+R
Sbjct: 63 GDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIVR 99
>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3;
neuron-specific X11L2 protein, neuronal
MUNC18-1-interacting protein 3, MINT-3; NMR {Homo
sapiens}
Length = 101
Score = 51.7 bits (124), Expect = 3e-10
Identities = 20/88 (22%), Positives = 33/88 (37%), Gaps = 5/88 (5%)
Query: 27 CEELKLKKLECEAWGFRLTGGRD--FGTPLTVLRVTGTSVAE-EGGMEVGDMIVSINGQC 83
C E+ L+K E G L + + AE G + +GD + +ING
Sbjct: 10 CREVHLEKRRGEGLGVALVESGWGSLLPTAVIANLLHGGPAERSGALSIGDRLTAINGTS 69
Query: 84 TQAMTHVEAQQHI--IGSGNTLTLQILR 109
+ Q + S ++TL I+
Sbjct: 70 LVGLPLAACQAAVRETKSQTSVTLSIVH 97
>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1,
riken structural genomics/proteomics initiative, RSGI,
protein binding; NMR {Mus musculus} SCOP: b.36.1.1
Length = 118
Score = 51.7 bits (124), Expect = 4e-10
Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 6/75 (8%)
Query: 41 GFRLTGGRDFGT-PLTVLRVT-GTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHI-- 96
L GG D + V V G + GG+ GD I++ING+ T EA+ +
Sbjct: 31 DLALEGGVDSPVGKVVVSAVYEGGAAERHGGVVKGDEIMAINGKIVTDYTLAEAEAALQK 90
Query: 97 --IGSGNTLTLQILR 109
G+ + L +
Sbjct: 91 AWNQGGDWIDLVVAV 105
>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex,
erbin., signaling protein; 1.25A {Homo sapiens} SCOP:
b.36.1.1 PDB: 1mfl_A
Length = 95
Score = 51.2 bits (123), Expect = 4e-10
Identities = 21/90 (23%), Positives = 37/90 (41%), Gaps = 9/90 (10%)
Query: 28 EELKLKKLECEAWGFRLTGGRDF--------GTPLTVLRVTGTSVAEEGGMEVGDMIVSI 79
E++++ + GF ++GG + V RV A ++ GD I+
Sbjct: 3 MEIRVRVEKDPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPAS-KLLQPGDKIIQA 61
Query: 80 NGQCTQAMTHVEAQQHIIGSGNTLTLQILR 109
NG + H +A + NT+ L I+R
Sbjct: 62 NGYSFINIEHGQAVSLLKTFQNTVELIIVR 91
>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics,
alternative splicing, cell cycle, cell division, cell
junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A
Length = 111
Score = 51.5 bits (124), Expect = 5e-10
Identities = 14/76 (18%), Positives = 30/76 (39%), Gaps = 6/76 (7%)
Query: 40 WGFRLTGGRDFG---TPLTVLRVT-GTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQH 95
GF +T P+ V + + ++G ++ GD ++ +NG + E
Sbjct: 24 LGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLAGKSQEEVVSL 83
Query: 96 I--IGSGNTLTLQILR 109
+ T++L + R
Sbjct: 84 LRSTKMEGTVSLLVFR 99
>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural
proteomics in europe, spine, structural genomics,
hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 108
Score = 51.6 bits (124), Expect = 5e-10
Identities = 16/78 (20%), Positives = 33/78 (42%), Gaps = 9/78 (11%)
Query: 41 GFRLTGGRDFG--------TPLTVLRVT-GTSVAEEGGMEVGDMIVSINGQCTQAMTHVE 91
G +T D G + V V + +G + GD ++++NG + TH +
Sbjct: 23 GISVTVLFDKGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQ 82
Query: 92 AQQHIIGSGNTLTLQILR 109
A + + +G + L + +
Sbjct: 83 AVETLRNTGQVVHLLLEK 100
>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing protein
1; structural genomi consortium, SGC, ATP-binding, cell
junction; 1.60A {Homo sapiens}
Length = 88
Score = 50.7 bits (122), Expect = 5e-10
Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 5/71 (7%)
Query: 41 GFRLTGGRDFGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHI--IG 98
GF + G V ++ + G++ GD+IV +N + QA+TH + +
Sbjct: 17 GFTIADSPG-GGGQRVKQIVDS--PRSRGLKEGDLIVEVNKKNVQALTHNQVVDMLVESP 73
Query: 99 SGNTLTLQILR 109
G+ +TL + R
Sbjct: 74 KGSEVTLLVQR 84
>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI,
structural genomics, alternative splicing, cell cycle,
cell division, cell junction; NMR {Homo sapiens}
Length = 121
Score = 51.6 bits (124), Expect = 5e-10
Identities = 14/75 (18%), Positives = 30/75 (40%), Gaps = 6/75 (8%)
Query: 41 GFRLTGGRDFG---TPLTVLRVT-GTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHI 96
GF +T P+ V + + ++G ++ GD ++ +NG + E +
Sbjct: 44 GFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLVGKSQEEVVSLL 103
Query: 97 --IGSGNTLTLQILR 109
T++L + R
Sbjct: 104 RSTKMEGTVSLLVFR 118
>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc,
LNX2_human, zinc-finger, polymorphism, ring finger
protein 1; 1.3A {Homo sapiens}
Length = 95
Score = 50.8 bits (122), Expect = 5e-10
Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 3/89 (3%)
Query: 22 TKEVMCEELKLKKLECEAWGFRLTGGRDFGTPLTVLRVTGTSVAEE-GGMEVGDMIVSIN 80
+ E++ L K+ E G +L D + +L + +A + G + D +++IN
Sbjct: 1 SMEILQVALH-KRDSGEQLGIKLVRRTD-EPGVFILDLLEGGLAAQDGRLSSNDRVLAIN 58
Query: 81 GQCTQAMTHVEAQQHIIGSGNTLTLQILR 109
G + T A Q I SG + L I R
Sbjct: 59 GHDLKYGTPELAAQIIQASGERVNLTIAR 87
>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein
complex, PDZ domain, peptide binding protein; 2.60A
{Drosophila melanogaster}
Length = 206
Score = 53.0 bits (127), Expect = 6e-10
Identities = 14/87 (16%), Positives = 31/87 (35%), Gaps = 4/87 (4%)
Query: 24 EVMCEELKLKKLECEAWGFRLTGGRDFGTPLTVLRVTGTSVAEEGG-MEVGDMIVSINGQ 82
E+ + L K + G L+ T+ + E ++ GD+I NG
Sbjct: 111 ELEKFNVDLMKKAGKELGLSLSPNE---IGCTIADLIQGQYPEIDSKLQRGDIITKFNGD 167
Query: 83 CTQAMTHVEAQQHIIGSGNTLTLQILR 109
+ + G+ +++++ R
Sbjct: 168 ALEGLPFQVCYALFKGANGKVSMEVTR 194
Score = 40.3 bits (94), Expect = 3e-05
Identities = 16/71 (22%), Positives = 30/71 (42%), Gaps = 6/71 (8%)
Query: 29 ELKLKKLECEAWGFRLTGGRD--FGTPLTVLRVTGTSVAE-EGGMEVGDMIVSINGQC-- 83
++LK E + G + GG++ T + V + +++ D I ING
Sbjct: 21 LIELKV-EKKPMGVIVCGGKNNHVTTGCVITHVYPEGQVAADKRLKIFDHICDINGTPIH 79
Query: 84 TQAMTHVEAQQ 94
+MT ++ Q
Sbjct: 80 VGSMTTLKVHQ 90
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell
adhesion; 2.90A {Homo sapiens}
Length = 468
Score = 53.0 bits (126), Expect = 1e-09
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Query: 38 EAWGFRLTGGRDFGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHII 97
++ G RL GG D G + V V S A + G+E GD I+ +N + EA ++
Sbjct: 11 DSVGLRLAGGNDVG--IFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIREEAVLFLL 68
Query: 98 GSGNTLTLQIL 108
+ IL
Sbjct: 69 DLPKGEEVTIL 79
>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 107
Score = 50.4 bits (121), Expect = 1e-09
Identities = 16/76 (21%), Positives = 28/76 (36%), Gaps = 7/76 (9%)
Query: 41 GFRLTGGRD------FGTPLTVLRVT-GTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQ 93
G + G + V VT G + +G ++V D IV ++G +T A
Sbjct: 23 GISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQNFAA 82
Query: 94 QHIIGSGNTLTLQILR 109
+ + + I R
Sbjct: 83 TVLRNTKGNVRFVIGR 98
>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural
genomics, mouse cDNA, riken structural
genomics/proteomics initiative; NMR {Mus musculus} SCOP:
b.36.1.1
Length = 126
Score = 50.6 bits (121), Expect = 1e-09
Identities = 13/72 (18%), Positives = 27/72 (37%), Gaps = 6/72 (8%)
Query: 41 GFRLTGGRDFGTPLTVLRVTGTSVAEE-GGMEVGDMIVSINGQCTQAMTHVEAQQHI--I 97
G + + L + + A G ++ GD+++S+ T E + + I
Sbjct: 41 GLVVIQNGPY---LQISHLINKGAAASDGILQPGDVLISVGHANVLGYTLREFLKLLQNI 97
Query: 98 GSGNTLTLQILR 109
G L ++ R
Sbjct: 98 TIGTVLQIKAYR 109
>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission,
protein binding; NMR {Rattus norvegicus}
Length = 113
Score = 50.5 bits (121), Expect = 1e-09
Identities = 15/76 (19%), Positives = 27/76 (35%), Gaps = 7/76 (9%)
Query: 41 GFRLTGGRDFG------TPLTVLRVTGTSVAEE-GGMEVGDMIVSINGQCTQAMTHVEAQ 93
G + G + V VT A G ++V D++V ++G +T A
Sbjct: 18 GISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAA 77
Query: 94 QHIIGSGNTLTLQILR 109
+ + + I R
Sbjct: 78 SVLRNTKGRVRFMIGR 93
>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell
adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A*
1t2m_A 2ain_A
Length = 106
Score = 50.0 bits (120), Expect = 1e-09
Identities = 18/92 (19%), Positives = 40/92 (43%), Gaps = 6/92 (6%)
Query: 22 TKEVMCEELKLKKLECEAWGFRLTGGRDFG---TPLTVLRVT-GTSVAEEGGMEVGDMIV 77
KE + LKK G + + G + V V G + +G + GD ++
Sbjct: 7 HKEPEIITVTLKKQN--GMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLL 64
Query: 78 SINGQCTQAMTHVEAQQHIIGSGNTLTLQILR 109
S++G+ ++ A + + + + +TL++ +
Sbjct: 65 SVDGRSLVGLSQERAAELMTRTSSVVTLEVAK 96
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight
junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A
3lh5_A
Length = 391
Score = 52.5 bits (125), Expect = 2e-09
Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 3/88 (3%)
Query: 22 TKEVMCEELKLKKLE-CEAWGFRLTGGRDFGTPLTVLRVTGTSVAEEGGMEVGDMIVSIN 80
+ ++ +KL K ++ G RL GG D G + V V S A + G+E GD I+ +N
Sbjct: 2 SHMILRPSMKLVKFRKGDSVGLRLAGGNDVG--IFVAGVLEDSPAAKEGLEEGDQILRVN 59
Query: 81 GQCTQAMTHVEAQQHIIGSGNTLTLQIL 108
+ EA ++ + IL
Sbjct: 60 NVDFTNIIREEAVLFLLDLPKGEEVTIL 87
>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding
protein, membrane, sensory transduction, vision; 1.55A
{Drosophila melanogaster} PDB: 2qkt_A 2qku_A
Length = 96
Score = 49.6 bits (119), Expect = 2e-09
Identities = 13/82 (15%), Positives = 30/82 (36%), Gaps = 4/82 (4%)
Query: 29 ELKLKKLECEAWGFRLTGGRDFGTPLTVLRVTGTSVAEE-GGMEVGDMIVSINGQCTQAM 87
+ L K + G L+ T+ + E ++ GD+I NG + +
Sbjct: 11 NVDLMKKAGKELGLSLSPNE---IGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGL 67
Query: 88 THVEAQQHIIGSGNTLTLQILR 109
+ G+ +++++ R
Sbjct: 68 PFQVSYALFKGANGKVSMEVTR 89
>3gge_A PDZ domain-containing protein GIPC2; structural genomics,
structural genomics consort protein binding; 2.60A {Homo
sapiens}
Length = 95
Score = 49.3 bits (118), Expect = 2e-09
Identities = 17/84 (20%), Positives = 35/84 (41%), Gaps = 6/84 (7%)
Query: 29 ELKLKKLECEAWGFRLTGGRDFGTPLTVLRVTGTSVAEE-GGMEVGDMIVSINGQCTQAM 87
E+ + K E ++ G +T + R+ V + + VGD I SING+
Sbjct: 8 EVNVYKSE-DSLGLTITDNGV--GYAFIKRIKDGGVIDSVKTICVGDHIESINGENIVGW 64
Query: 88 THVEAQQHI--IGSGNTLTLQILR 109
H + + + + T++++
Sbjct: 65 RHYDVAKKLKELKKEELFTMKLIE 88
>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide
binding protein; NMR {Drosophila melanogaster}
Length = 106
Score = 49.7 bits (119), Expect = 2e-09
Identities = 13/82 (15%), Positives = 29/82 (35%), Gaps = 4/82 (4%)
Query: 29 ELKLKKLECEAWGFRLTGGRDFGTPLTVLRVTGTSVAEE-GGMEVGDMIVSINGQCTQAM 87
+ L K + G L+ T+ + E ++ GD+I NG + +
Sbjct: 5 NVDLMKKAGKELGLSLSPNE---IGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGL 61
Query: 88 THVEAQQHIIGSGNTLTLQILR 109
G+ +++++ R
Sbjct: 62 PFQVCYALFKGANGKVSMEVTR 83
>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, unknown function;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 124
Score = 49.1 bits (117), Expect = 5e-09
Identities = 21/91 (23%), Positives = 37/91 (40%), Gaps = 5/91 (5%)
Query: 23 KEVMCEELKLKKLE-CEAWGFRLTGGRDF--GTPLTVLRVTGTSVAEE-GGMEVGDMIVS 78
+E+ EE+ L ++ + G + D + + + S+A + G + GD I+
Sbjct: 16 EELELEEVDLYRMNSQDKLGLTVCYRTDDEDDIGIYISEIDPNSIAAKDGRIREGDRIIQ 75
Query: 79 INGQCTQAMTHVEAQQHIIGSGNTLTLQILR 109
ING Q A + N +L I R
Sbjct: 76 INGIEVQNREEAVALLTSEENKNF-SLLIAR 105
>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase
binding domain, signaling protein; HET: GNP; 2.10A {Mus
musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A
2lc7_A 1rzx_A
Length = 128
Score = 49.1 bits (117), Expect = 6e-09
Identities = 12/79 (15%), Positives = 28/79 (35%), Gaps = 10/79 (12%)
Query: 41 GFRLTGGRDFGT---------PLTVLRVTGTSVAE-EGGMEVGDMIVSINGQCTQAMTHV 90
GF + G + + R+ +A+ G + V D ++ +NG +
Sbjct: 45 GFYIRDGSSVRVTPHGLEKVPGIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLD 104
Query: 91 EAQQHIIGSGNTLTLQILR 109
+ +I + L + +
Sbjct: 105 QVTDMMIANSRNLIITVRP 123
>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain, structural
genomics, KIAA0705 protein; NMR {Homo sapiens} SCOP:
b.36.1.1
Length = 96
Score = 48.2 bits (115), Expect = 7e-09
Identities = 19/71 (26%), Positives = 29/71 (40%), Gaps = 7/71 (9%)
Query: 41 GFRLTGGRDFGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHI--IG 98
GF + +L + G G+ GD+IV IN Q Q ++H E +
Sbjct: 24 GFTIADSPTGQRVKQILDIQGC-----PGLCEGDLIVEINQQNVQNLSHTEVVDILKDCP 78
Query: 99 SGNTLTLQILR 109
G+ +L I R
Sbjct: 79 IGSETSLIIHR 89
>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein,
STXBP4 protein, structural genomics, NPPSFA; NMR {Mus
musculus} SCOP: b.36.1.1
Length = 109
Score = 47.0 bits (112), Expect = 2e-08
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 41 GFRLTGGRDF--GTPLTVLRVT-GTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHII 97
G ++ GG + G + + V G ++G ++ GD +VSIN + ++ EA+ I
Sbjct: 28 GLKILGGINRNEGPLVYIHEVIPGGDCYKDGRLKPGDQLVSINKESMIGVSFEEAKSIIT 87
Query: 98 GSGN 101
+
Sbjct: 88 RAKL 91
>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 108
Score = 47.0 bits (112), Expect = 3e-08
Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 6/75 (8%)
Query: 41 GFRLTGGRD----FGTPLTVLRVTGTSVAEE-GGMEVGDMIVSINGQCTQAMTHVEAQQH 95
GF + +D + + + + VAE GG+ GD +VS+N C + EA +
Sbjct: 29 GFSILDYQDPLDPTRSVIVIRSLVADGVAERSGGLLPGDRLVSVNEYCLDNTSLAEAVEI 88
Query: 96 IIGSGN-TLTLQILR 109
+ + L I
Sbjct: 89 LKAVPPGLVHLGICS 103
>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor
clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1
Length = 88
Score = 46.2 bits (110), Expect = 4e-08
Identities = 18/83 (21%), Positives = 32/83 (38%), Gaps = 3/83 (3%)
Query: 27 CEELKLKKLECEAWGFRLTGGRDFGTPLTVLRVTGTSVAE-EGGMEVGDMIVSINGQCTQ 85
++ +K E G L V R+ + +G + VGD I ING
Sbjct: 2 SRLVQFQKNTDEPMGITLKMNEL--NHCIVARIMHGGMIHRQGTLHVGDEIREINGISVA 59
Query: 86 AMTHVEAQQHIIGSGNTLTLQIL 108
T + Q+ + ++T +I+
Sbjct: 60 NQTVEQLQKMLREMRGSITFKIV 82
>2pzd_A Serine protease HTRA2; PDZ domain, apoptosis, mitochondria, peptid
module, hydrolase; 2.75A {Homo sapiens} SCOP: b.36.1.4
Length = 113
Score = 44.6 bits (106), Expect = 2e-07
Identities = 14/54 (25%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Query: 56 VLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQILR 109
+ +V S A G+ GD+I++I Q + + E + + + L +QI R
Sbjct: 39 IHKVILGSPAHRAGLRPGDVILAIGE---QMVQNAEDVYEAVRTQSQLAVQIRR 89
>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB:
3nzi_A 3nwu_A 2ytw_A 2joa_A
Length = 332
Score = 45.7 bits (109), Expect = 4e-07
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 56 VLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQILR 109
++ V + AE GG++ D+I+SINGQ + V +I +TL + + R
Sbjct: 258 IIEVIPDTPAEAGGLKENDVIISINGQSVVSANDV---SDVIKRESTLNMVVRR 308
>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing protein
3; structural genomics consortium, SGC, PDZ domain,
signaling P; 1.60A {Homo sapiens}
Length = 113
Score = 44.1 bits (104), Expect = 4e-07
Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 7/71 (9%)
Query: 41 GFRLTGGRDFGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHI--IG 98
GF + +L G++ GD+I I Q Q +TH++ + +
Sbjct: 26 GFAIADSPTGQKVKMIL-----DSQWCQGLQKGDIIKEIYHQNVQNLTHLQVVEVLKQFP 80
Query: 99 SGNTLTLQILR 109
G + L ILR
Sbjct: 81 VGADVPLLILR 91
>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function;
1.80A {Homo sapiens} PDB: 3ch8_A
Length = 195
Score = 44.9 bits (105), Expect = 4e-07
Identities = 20/77 (25%), Positives = 31/77 (40%), Gaps = 9/77 (11%)
Query: 41 GFRLTGGRDFG--------TPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEA 92
GF ++GG + V RV A ++ GD I+ NG + H +A
Sbjct: 5 GFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPAS-KLLQPGDKIIQANGYSFINIEHGQA 63
Query: 93 QQHIIGSGNTLTLQILR 109
+ NT+ L I+R
Sbjct: 64 VSLLKTFQNTVELIIVR 80
>2yub_A LIMK-2, LIM domain kinase 2; PDZ domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 118
Score = 43.3 bits (101), Expect = 8e-07
Identities = 18/89 (20%), Positives = 29/89 (32%), Gaps = 5/89 (5%)
Query: 26 MCEELKLKKLECEAWGFRLTGGRDFGTPLTVLRVTG-----TSVAEEGGMEVGDMIVSIN 80
+ + GF +T T ++V S + GD I+ IN
Sbjct: 15 SVTLISMPATTECRRGFSVTVESASSNYATTVQVKEVNRMHISPNNRNAIHPGDRILEIN 74
Query: 81 GQCTQAMTHVEAQQHIIGSGNTLTLQILR 109
G + + E + I + TL L I
Sbjct: 75 GTPVRTLRVEEVEDAIKQTSQTLQLLIEH 103
>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand,
cytoplasm, developmental protein, phosphoprotein, WNT
signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A
3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A
Length = 108
Score = 42.8 bits (101), Expect = 9e-07
Identities = 16/87 (18%), Positives = 38/87 (43%), Gaps = 6/87 (6%)
Query: 29 ELKLKKLECEAWGFRLTGGRDF--GTPLTVLRVT-GTSVAEEGGMEVGDMIVSINGQCTQ 85
+ L + G + G + + + + G +VA +G +E GDM++ +N +
Sbjct: 8 TVTLNMEKYNFLGISIVGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFE 67
Query: 86 AMTHVEAQQ---HIIGSGNTLTLQILR 109
M++ +A + I+ + L + +
Sbjct: 68 NMSNDDAVRVLRDIVHKPGPIVLTVAK 94
>2p3w_A Probable serine protease HTRA3; PDZ domain, phage derived high
affinity ligand, protein BIND; 1.70A {Homo sapiens}
Length = 112
Score = 43.1 bits (102), Expect = 9e-07
Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 56 VLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQILR 109
V V S ++ GG++ GD+IV +NG+ + + Q + + + L L++ R
Sbjct: 39 VQEVAPNSPSQRGGIQDGDIIVKVNGRPLVDSSEL---QEAVLTESPLLLEVRR 89
>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation,
binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4
b.47.1.1
Length = 325
Score = 44.2 bits (105), Expect = 1e-06
Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Query: 56 VLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQILR 109
+ +V S A G+ GD+I++I Q Q V + + + L +QI R
Sbjct: 260 IHKVILGSPAHRAGLRPGDVILAIGEQMVQNAEDV---YEAVRTQSQLAVQIRR 310
>1fc6_A Photosystem II D1 protease; D1 C-terminal processing protease,
serine protease, serine- lysine catalytic DYAD, PDZ
domain, photosynthesis; 1.80A {Scenedesmus obliquus}
SCOP: b.36.1.3 c.14.1.2 PDB: 1fc9_A 1fc7_A 1fcf_A
Length = 388
Score = 40.7 bits (96), Expect = 2e-05
Identities = 15/70 (21%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Query: 41 GFRLTGGRDFGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIG-S 99
G +T G + VL AE+ G GD+IV+++G + M+ + + G +
Sbjct: 88 GLEITYDGGSGKDVVVLTPAPGGPAEKAGARAGDVIVTVDGTAVKGMSLYDVSDLLQGEA 147
Query: 100 GNTLTLQILR 109
+ + + +
Sbjct: 148 DSQVEVVLHA 157
>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs large
homolog 2, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 91
Score = 38.6 bits (90), Expect = 3e-05
Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 5/80 (6%)
Query: 31 KLKKLECEAWGFRLTGGRDFGTPLTVLRVTGTSVAE-EGGMEVGDMIVSINGQCTQAMTH 89
++K E G R G L + R+ + +G + VGD+I +NGQ
Sbjct: 11 GIRKTAGEHLGVTF---RVEGGELVIARILHGGMVAQQGLLHVGDIIKEVNGQ-PVGSDP 66
Query: 90 VEAQQHIIGSGNTLTLQILR 109
Q+ + + ++ L+IL
Sbjct: 67 RALQELLRNASGSVILKILS 86
>2i4s_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2
secretion system, protein transport, membrane protein;
1.92A {Vibrio cholerae} SCOP: b.36.1.5
Length = 105
Score = 38.8 bits (90), Expect = 3e-05
Identities = 11/54 (20%), Positives = 21/54 (38%)
Query: 56 VLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQILR 109
V + E G++ GDM V++NG + + ++L + R
Sbjct: 41 VSPGKDPVLFESIGLQDGDMAVALNGLDLTDPNVMNTLFQSMNEMTEMSLTVER 94
>2i6v_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2
secretion system, protein transport, membrane protein;
1.63A {Vibrio cholerae} SCOP: b.36.1.5
Length = 87
Score = 37.5 bits (87), Expect = 8e-05
Identities = 14/72 (19%), Positives = 29/72 (40%), Gaps = 12/72 (16%)
Query: 38 EAWGFRLTGGRDFGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHII 97
+ G+R++ G+D + E G++ GDM V++NG + +
Sbjct: 17 KVLGYRVSPGKD------------PVLFESIGLQDGDMAVALNGLDLTDPNVMNTLFQSM 64
Query: 98 GSGNTLTLQILR 109
++L + R
Sbjct: 65 NEMTEMSLTVER 76
>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta
protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4
b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A*
1sot_A 1soz_A 1vcw_A 2r3y_A
Length = 318
Score = 38.3 bits (90), Expect = 1e-04
Identities = 12/54 (22%), Positives = 26/54 (48%)
Query: 56 VLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQILR 109
V V+ A G++V D+I+S++ + + Q I G+ + + ++R
Sbjct: 248 VNEVSPDGPAANAGIQVNDLIISVDNKPAISALETMDQVAEIRPGSVIPVVVMR 301
>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone,
hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A
4a9g_A
Length = 436
Score = 38.4 bits (90), Expect = 1e-04
Identities = 14/54 (25%), Positives = 27/54 (50%)
Query: 56 VLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQILR 109
V V S + + G++ GD+I S+NG+ + + ++ G + L +LR
Sbjct: 267 VSEVLPGSGSAKAGVKAGDIITSLNGKPLNSFAELRSRIATTEPGTKVKLGLLR 320
Score = 34.2 bits (79), Expect = 0.004
Identities = 11/56 (19%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Query: 54 LTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQILR 109
+ + V S A + G++ D+I+ +N ++ + + + LQI+R
Sbjct: 365 IKIDEVVKGSPAAQAGLQKDDVIIGVNRDRVNSIAEMRKV--LAAKPAIIALQIVR 418
>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase;
2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A
Length = 451
Score = 38.1 bits (89), Expect = 2e-04
Identities = 16/54 (29%), Positives = 27/54 (50%)
Query: 56 VLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQILR 109
V +V S AE G++ GD+I IN T V+ ++ G+T+ + + R
Sbjct: 286 VSQVNPNSPAELAGLKAGDIITQINDTKITQATQVKTTISLLRVGSTVKIIVER 339
Score = 33.8 bits (78), Expect = 0.005
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 54 LTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGS-GNTLTLQILR 109
+ V+ + S G+ GD+I+S N + +T V++ Q I L +Q+LR
Sbjct: 388 VQVVGASENSAGWRAGIRPGDIIISANK---KPVTDVKSLQTIAQEKKKELLVQVLR 441
>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone,
DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}
Length = 345
Score = 38.0 bits (89), Expect = 2e-04
Identities = 14/54 (25%), Positives = 27/54 (50%)
Query: 56 VLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQILR 109
V V S + + G++ GD+I S+NG+ + + ++ G + L +LR
Sbjct: 267 VSEVLPGSGSAKAGVKAGDIITSLNGKPLNSFAELRSRIATTEPGTKVKLGLLR 320
>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease,
trypsin, chaperone, PDZ, ATP-independent,
temperature-regulated, periplasm; 2.80A {Escherichia
coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A
3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A
Length = 448
Score = 38.1 bits (89), Expect = 2e-04
Identities = 19/54 (35%), Positives = 31/54 (57%)
Query: 56 VLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQILR 109
V +V S A + G++ GD+I S+NG+ + + AQ + G+ LTL +LR
Sbjct: 290 VSQVLPNSSAAKAGIKAGDVITSLNGKPISSFAALRAQVGTMPVGSKLTLGLLR 343
Score = 35.4 bits (82), Expect = 0.002
Identities = 13/56 (23%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Query: 54 LTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQILR 109
+ V V + A + G++ GD+I+ N Q + + + + + L L I R
Sbjct: 385 VVVNNVKTGTPAAQIGLKKGDVIIGANQQAVKNIAELRKV--LDSKPSVLALNIQR 438
>3id1_A Regulator of sigma E protease; hydrolase, cell inner membrane, cell
membrane, membrane, metal-binding, metalloprotease,
transmembrane; 1.67A {Escherichia coli k-12} PDB: 2zpl_A
Length = 95
Score = 35.3 bits (81), Expect = 5e-04
Identities = 11/53 (20%), Positives = 20/53 (37%), Gaps = 2/53 (3%)
Query: 59 VTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQ--QHIIGSGNTLTLQILR 109
+ S+A E + G + +++G T V Q I T+T+
Sbjct: 9 IAANSIAAEAQIAPGTELKAVDGIETPDWDAVRLQLVDKIGDESTTITVAPFG 61
>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics,
PSI, protein structure initiative; 2.00A {Mycobacterium
tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A
Length = 324
Score = 36.5 bits (85), Expect = 6e-04
Identities = 9/57 (15%), Positives = 21/57 (36%), Gaps = 6/57 (10%)
Query: 56 VLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGS---GNTLTLQILR 109
++ V A G+ G ++ ++ + + +A + S G T+ L
Sbjct: 246 IVEVVAGGAAANAGVPKGVVVTKVDD---RPINSADALVAAVRSKAPGATVALTFQD 299
>2kjp_A Uncharacterized protein YLBL; mixed alpha-beta protein, cell
membrane, hydrolase, membrane, protease, serine
protease, transmembrane; NMR {Bacillus subtilis}
Length = 91
Score = 34.9 bits (81), Expect = 7e-04
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 7/57 (12%)
Query: 56 VLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGS---GNTLTLQILR 109
V A+ G +EVGD I+S +G + E I S G+ +TL+I R
Sbjct: 5 ASSVVENMPAK-GKIEVGDKIISADG---KNYQSAEKLIDYISSKKAGDKVTLKIER 57
>2hga_A Conserved protein MTH1368; GFT structural genomics, PSI, protein
structure initiative; NMR
{Methanothermobacterthermautotrophicus} SCOP: b.36.1.6
Length = 125
Score = 35.2 bits (81), Expect = 0.001
Identities = 14/54 (25%), Positives = 21/54 (38%), Gaps = 1/54 (1%)
Query: 56 VLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQILR 109
+ V S A + G +I SING T +T A I G + + +
Sbjct: 29 IDSVVPGSPAS-KVLTPGLVIESINGMPTSNLTTYSAALKTISVGEVINITTDQ 81
>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane
protein; 1.65A {Homo sapiens}
Length = 209
Score = 35.4 bits (81), Expect = 0.001
Identities = 18/67 (26%), Positives = 22/67 (32%), Gaps = 3/67 (4%)
Query: 44 LTGGRDFGTPLTVLRVTGTSVAEEGGME-VGDMIVSINGQCTQAMTHVEAQQHIIGSGNT 102
+ GG G VLRV S G+E D IVSING
Sbjct: 10 IPGGGTEG--YHVLRVQENSPGHRAGLEPFFDFIVSINGSRLNKDNDTLKDLLKANVEKP 67
Query: 103 LTLQILR 109
+ + I
Sbjct: 68 VKMLIYS 74
>2kl1_A YLBL protein; structure genomics, structural genomics, PSI-2,
protein STRU initiative, northeast structural genomics
consortium; NMR {Geobacillus thermodenitrificans}
Length = 94
Score = 33.8 bits (78), Expect = 0.002
Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 7/57 (12%)
Query: 56 VLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGS---GNTLTLQILR 109
V+ V A G +E GD I +I+G Q + E + G+ + + +R
Sbjct: 9 VMSVLPNMPAA-GRLEAGDRIAAIDG---QPINTSEQIVSYVREKQAGDRVRVTFIR 61
>3k50_A Putative S41 protease; structural genomics, joint center for
structural genomics, JCSG, protein structure initiative;
2.00A {Bacteroides fragilis nctc 9343}
Length = 403
Score = 33.6 bits (77), Expect = 0.006
Identities = 10/45 (22%), Positives = 16/45 (35%)
Query: 65 AEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQILR 109
AEE G++ G I+ +NG E Q + +
Sbjct: 103 AEEAGLQRGHWIMMMNGDYITKKVESELLQGSTRQLQIGVYKEVV 147
>4fgm_A Aminopeptidase N family protein; structural genomics, PSI-biology,
northeast structural genom consortium, NESG,
peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis L2TR}
Length = 597
Score = 33.1 bits (74), Expect = 0.013
Identities = 18/82 (21%), Positives = 30/82 (36%), Gaps = 5/82 (6%)
Query: 30 LKLKKLECEAWGFRLTGGRDFGTPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTH 89
+ K E A + L VL V A G+ GD I++I+ T
Sbjct: 474 VGGKASEQPARVNFGAKYKASPQGLDVLNVYHDESAYHAGLSAGDKIIAIDH---LQATE 530
Query: 90 VEAQQHI--IGSGNTLTLQILR 109
++ + G+T+T+ R
Sbjct: 531 QSVKRILERYIPGDTVTIHAFR 552
>2l97_A HTRA, putative serine protease; HTRA-PDZ, protein binding; NMR
{Streptococcus pneumoniae}
Length = 134
Score = 31.8 bits (73), Expect = 0.019
Identities = 12/57 (21%), Positives = 24/57 (42%), Gaps = 7/57 (12%)
Query: 56 VLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGS---GNTLTLQILR 109
V V A G +E D+I ++ + + T + Q + + G+T+ + R
Sbjct: 61 VRSVQSNMPAN-GHLEKYDVITKVDDKEIASSTDL---QSALYNHSIGDTIKITYYR 113
>3i18_A LMO2051 protein; alpha-beta protein, structural genomics, PSI-2,
protein structure initiative, northeast structural
genomics consortium; 1.70A {Listeria monocytogenes} PDB:
2kjk_A 3i1e_A
Length = 100
Score = 31.1 bits (71), Expect = 0.021
Identities = 12/57 (21%), Positives = 21/57 (36%), Gaps = 7/57 (12%)
Query: 56 VLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGS---GNTLTLQILR 109
V+ V A + GD+I I+G ++ I S G+T+ +
Sbjct: 11 VMSVKDDVPAA-DVLHAGDLITEIDGNAFKSSQEF---IDYIHSKKVGDTVKINYKH 63
>2zpm_A Regulator of sigma E protease; metalloproteinase, membrane protein,
PDZ domain, hydrolase, inner membrane, membrane,
metal-binding; HET: MLY MSE; 0.98A {Escherichia coli}
PDB: 3id2_A 3id3_A 3id4_A
Length = 91
Score = 30.9 bits (70), Expect = 0.025
Identities = 15/58 (25%), Positives = 22/58 (37%), Gaps = 1/58 (1%)
Query: 52 TPLTVLRVTGTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTLQILR 109
+ V S A G++ GD IV ++GQ G +L L+I R
Sbjct: 4 IEPVLENVQPNSAASXAGLQAGDRIVXVDGQPLTQWVTFVMLVR-DNPGXSLALEIER 60
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.9 bits (66), Expect = 0.099
Identities = 12/44 (27%), Positives = 16/44 (36%), Gaps = 14/44 (31%)
Query: 28 EELKLKKLECEAWGFRLTGGRDFGTPLTVLRVTGTSVAEEGGME 71
E+ LKKL+ +L D P L + T ME
Sbjct: 18 EKQALKKLQAS---LKLYAD-D-SAP--ALAIKAT-------ME 47
>3qo6_A Protease DO-like 1, chloroplastic; protease, HTRA, PH-sensor,
hydrolase, photosynthesis; 2.50A {Arabidopsis thaliana}
Length = 348
Score = 29.9 bits (68), Expect = 0.11
Identities = 14/65 (21%), Positives = 28/65 (43%), Gaps = 11/65 (16%)
Query: 56 VLRVTGTSVAEEGGME-----------VGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLT 104
VL + A + G++ +GD+I S+NG + + G+ +T
Sbjct: 255 VLDAPPSGPAGKAGLQSTKRDGYGRLVLGDIITSVNGTKVSNGSDLYRILDQCKVGDEVT 314
Query: 105 LQILR 109
+++LR
Sbjct: 315 VEVLR 319
>1k32_A Tricorn protease; protein degradation, substrate gating, serine
protease, beta propeller, proteasome, hydrolase; 2.00A
{Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1
b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Length = 1045
Score = 29.8 bits (66), Expect = 0.14
Identities = 8/45 (17%), Positives = 16/45 (35%), Gaps = 2/45 (4%)
Query: 61 GTSVAEEGGMEVGDMIVSINGQCTQAMTHVEAQQHIIGSGNTLTL 105
+ + E G G +I I+G+ A + + + T
Sbjct: 766 KSPIFEYGIDPTGYLIEDIDGETVGAGS--NIYRVLSEKAGTSAR 808
>3qik_A Phosphatidylinositol 3,4,5-trisphosphate-dependen exchanger 1
protein; PDZ domain, structural genomics consortium,
SGC, hydrolase R; 2.29A {Homo sapiens}
Length = 101
Score = 25.9 bits (56), Expect = 1.6
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Query: 21 LTKEVMCEELKLKKLECEAWGFRLTGGRDFGTPLTVLRVTGTSVAEEGGMEVGDMIVSIN 80
L + ++ + L + E E +GF + + + V V S+AE G++VG I SIN
Sbjct: 12 LVENILAKRLLILPQE-EDYGFDI---EEKNKAVVVKSVQRGSLAEVAGLQVGRKIYSIN 67
Query: 81 G 81
Sbjct: 68 E 68
>2kc5_A Hydrogenase-2 operon protein HYBE; chaperone; NMR {Escherichia
coli}
Length = 162
Score = 26.1 bits (57), Expect = 2.1
Identities = 5/23 (21%), Positives = 8/23 (34%)
Query: 33 KKLECEAWGFRLTGGRDFGTPLT 55
+ F L G+ G +T
Sbjct: 36 PSMPVYVSDFTLFEGQWTGCVIT 58
>1rl1_A Suppressor of G2 allele of SKP1 homolog; beta sandwich, 7 beta
strands, similar to P23, lacking LAST beta strand SEEN
in P23, protein degradation; NMR {Homo sapiens} SCOP:
b.15.1.3
Length = 114
Score = 24.5 bits (53), Expect = 7.2
Identities = 12/28 (42%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 29 ELKLKKLECEAWGFRLTGGRDFGTPLTV 56
E+KLKK E W +L G D TP
Sbjct: 81 EIKLKKPEAVRWE-KLEGQGDVPTPKQF 107
>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody,
virus/viral protein/antibiotic complex; 2.30A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.1
Length = 247
Score = 24.6 bits (54), Expect = 7.4
Identities = 6/10 (60%), Positives = 6/10 (60%)
Query: 98 GSGNTLTLQI 107
GSG TL I
Sbjct: 200 GSGTDFTLTI 209
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA
synthetase, tRNA ligase, AARS, translation,
ATP-binding, nucleotide-binding; HET: 4AD; 2.83A
{Entamoeba histolytica} PDB: 3m4q_A
Length = 456
Score = 24.9 bits (55), Expect = 7.5
Identities = 12/54 (22%), Positives = 18/54 (33%), Gaps = 16/54 (29%)
Query: 16 LIQLILTKEVMCEELKLKKLECEAWGFRLTGGRDFGTPLTVLRVTGTSVAEEGG 69
Q ++ + +CE K+K L E L +TG A G
Sbjct: 60 YCQCVIFGKELCEPEKVKLLTREC----------------SLEITGRLNAYAGK 97
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.139 0.413
Gapped
Lambda K H
0.267 0.0425 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,695,470
Number of extensions: 91140
Number of successful extensions: 433
Number of sequences better than 10.0: 1
Number of HSP's gapped: 379
Number of HSP's successfully gapped: 203
Length of query: 109
Length of database: 6,701,793
Length adjustment: 73
Effective length of query: 36
Effective length of database: 4,663,560
Effective search space: 167888160
Effective search space used: 167888160
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (24.2 bits)