BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy519
(351 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 102/210 (48%), Gaps = 13/210 (6%)
Query: 47 SGHDMTV----WSVEACSKGLALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPK 102
SGH + + WS ++ L ++ S D T ++W + L+ GH V C F+P+
Sbjct: 84 SGHKLGISDVAWSSDS---NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 140
Query: 103 ITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRL 162
I +GS+D++VR+W + G ++ H PV ++ F+ G + S SYD R+
Sbjct: 141 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS---SSYDGLCRI 197
Query: 163 WSITDGASVRVFSDHVSPVLS-IAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEH 221
W G ++ D +P +S + FSP GKY+ + D + + + G+ + + ++
Sbjct: 198 WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN 257
Query: 222 EPVTSLV-WSVT-GETLVTGSLTGTVQFYG 249
E +SVT G+ +V+GS V +
Sbjct: 258 EKYCIFANFSVTGGKWIVSGSEDNLVYIWN 287
Score = 68.2 bits (165), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 81/174 (46%), Gaps = 7/174 (4%)
Query: 82 YPLRI-FVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIA 140
Y L+ GH + V+ +F P ++ + S DK +++W DG + S H + +A
Sbjct: 35 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 94
Query: 141 FSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDG 200
+S L S S DK +++W ++ G ++ H + V F+P + SG D
Sbjct: 95 WSSDSNLLVS---ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 151
Query: 201 LVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSAS 254
V ++ TG+ + +PV+++ ++ G +V+ S G + W +AS
Sbjct: 152 SVRIWDVKTGKCLKTLPAHS-DPVSAVHFNRDGSLIVSSSYDGLCRI--WDTAS 202
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 67/179 (37%), Gaps = 43/179 (24%)
Query: 62 GLALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSIT 121
L ++GS D + R+W ++ L+ H V+ F+ + I + SYD R+W
Sbjct: 142 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 201
Query: 122 DGASVRVFSDHVSPVLS-IAFSPCGKYL-------------------------------- 148
G ++ D +P +S + FSP GKY+
Sbjct: 202 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYC 261
Query: 149 ------ASGG----TGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGG 197
+GG +GS D V +W++ V+ H V+S A P +AS
Sbjct: 262 IFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 320
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 48/102 (47%), Gaps = 4/102 (3%)
Query: 65 LTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKIT---YIGTGSYDKAVRLWSIT 121
L + D T +LW + L+ + GHK + C + +T +I +GS D V +W++
Sbjct: 230 LAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ 289
Query: 122 DGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLW 163
V+ H V+S A P +AS + DK ++LW
Sbjct: 290 TKEIVQKLQGHTDVVISTACHPTENIIASAALEN-DKTIKLW 330
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 90.5 bits (223), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 102/210 (48%), Gaps = 13/210 (6%)
Query: 47 SGHDMTV----WSVEACSKGLALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPK 102
SGH + + WS ++ L ++ S D T ++W + L+ GH V C F+P+
Sbjct: 62 SGHKLGISDVAWSSDS---NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 118
Query: 103 ITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRL 162
I +GS+D++VR+W + G ++ H PV ++ F+ G + S SYD R+
Sbjct: 119 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS---SSYDGLCRI 175
Query: 163 WSITDGASVRVFSDHVSPVLS-IAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEH 221
W G ++ D +P +S + FSP GKY+ + D + + + G+ + + ++
Sbjct: 176 WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN 235
Query: 222 EPVTSLV-WSVT-GETLVTGSLTGTVQFYG 249
E +SVT G+ +V+GS V +
Sbjct: 236 EKYCIFANFSVTGGKWIVSGSEDNLVYIWN 265
Score = 68.2 bits (165), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 81/174 (46%), Gaps = 7/174 (4%)
Query: 82 YPLRI-FVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIA 140
Y L+ GH + V+ +F P ++ + S DK +++W DG + S H + +A
Sbjct: 13 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 72
Query: 141 FSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDG 200
+S L S S DK +++W ++ G ++ H + V F+P + SG D
Sbjct: 73 WSSDSNLLVS---ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 129
Query: 201 LVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSAS 254
V ++ TG+ + +PV+++ ++ G +V+ S G + W +AS
Sbjct: 130 SVRIWDVKTGKCLKTLPAHS-DPVSAVHFNRDGSLIVSSSYDGLCRI--WDTAS 180
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 67/179 (37%), Gaps = 43/179 (24%)
Query: 62 GLALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSIT 121
L ++GS D + R+W ++ L+ H V+ F+ + I + SYD R+W
Sbjct: 120 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 179
Query: 122 DGASVRVFSDHVSPVLS-IAFSPCGKYL-------------------------------- 148
G ++ D +P +S + FSP GKY+
Sbjct: 180 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYC 239
Query: 149 ------ASGG----TGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGG 197
+GG +GS D V +W++ V+ H V+S A P +AS
Sbjct: 240 IFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 298
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 48/102 (47%), Gaps = 4/102 (3%)
Query: 65 LTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKIT---YIGTGSYDKAVRLWSIT 121
L + D T +LW + L+ + GHK + C + +T +I +GS D V +W++
Sbjct: 208 LAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ 267
Query: 122 DGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLW 163
V+ H V+S A P +AS + DK ++LW
Sbjct: 268 TKEIVQKLQGHTDVVISTACHPTENIIASAALEN-DKTIKLW 308
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 90.5 bits (223), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 102/210 (48%), Gaps = 13/210 (6%)
Query: 47 SGHDMTV----WSVEACSKGLALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPK 102
SGH + + WS ++ L ++ S D T ++W + L+ GH V C F+P+
Sbjct: 86 SGHKLGISDVAWSSDS---NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 142
Query: 103 ITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRL 162
I +GS+D++VR+W + G ++ H PV ++ F+ G + S SYD R+
Sbjct: 143 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS---SSYDGLCRI 199
Query: 163 WSITDGASVRVFSDHVSPVLS-IAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEH 221
W G ++ D +P +S + FSP GKY+ + D + + + G+ + + ++
Sbjct: 200 WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN 259
Query: 222 EPVTSLV-WSVT-GETLVTGSLTGTVQFYG 249
E +SVT G+ +V+GS V +
Sbjct: 260 EKYCIFANFSVTGGKWIVSGSEDNLVYIWN 289
Score = 68.2 bits (165), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 81/174 (46%), Gaps = 7/174 (4%)
Query: 82 YPLRI-FVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIA 140
Y L+ GH + V+ +F P ++ + S DK +++W DG + S H + +A
Sbjct: 37 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 96
Query: 141 FSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDG 200
+S L S S DK +++W ++ G ++ H + V F+P + SG D
Sbjct: 97 WSSDSNLLVS---ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 153
Query: 201 LVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSAS 254
V ++ TG+ + +PV+++ ++ G +V+ S G + W +AS
Sbjct: 154 SVRIWDVKTGKCLKTLPAHS-DPVSAVHFNRDGSLIVSSSYDGLCRI--WDTAS 204
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 67/179 (37%), Gaps = 43/179 (24%)
Query: 62 GLALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSIT 121
L ++GS D + R+W ++ L+ H V+ F+ + I + SYD R+W
Sbjct: 144 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 203
Query: 122 DGASVRVFSDHVSPVLS-IAFSPCGKYL-------------------------------- 148
G ++ D +P +S + FSP GKY+
Sbjct: 204 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYC 263
Query: 149 ------ASGG----TGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGG 197
+GG +GS D V +W++ V+ H V+S A P +AS
Sbjct: 264 IFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 322
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 48/102 (47%), Gaps = 4/102 (3%)
Query: 65 LTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKIT---YIGTGSYDKAVRLWSIT 121
L + D T +LW + L+ + GHK + C + +T +I +GS D V +W++
Sbjct: 232 LAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ 291
Query: 122 DGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLW 163
V+ H V+S A P +AS + DK ++LW
Sbjct: 292 TKEIVQKLQGHTDVVISTACHPTENIIASAALEN-DKTIKLW 332
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 90.5 bits (223), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 102/210 (48%), Gaps = 13/210 (6%)
Query: 47 SGHDMTV----WSVEACSKGLALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPK 102
SGH + + WS ++ L ++ S D T ++W + L+ GH V C F+P+
Sbjct: 68 SGHKLGISDVAWSSDS---NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 124
Query: 103 ITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRL 162
I +GS+D++VR+W + G ++ H PV ++ F+ G + S SYD R+
Sbjct: 125 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS---SSYDGLCRI 181
Query: 163 WSITDGASVRVFSDHVSPVLS-IAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEH 221
W G ++ D +P +S + FSP GKY+ + D + + + G+ + + ++
Sbjct: 182 WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN 241
Query: 222 EPVTSLV-WSVT-GETLVTGSLTGTVQFYG 249
E +SVT G+ +V+GS V +
Sbjct: 242 EKYCIFANFSVTGGKWIVSGSEDNLVYIWN 271
Score = 68.2 bits (165), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 88/189 (46%), Gaps = 7/189 (3%)
Query: 67 GSRDTTARLWSLEQMYPLRI-FVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGAS 125
GS + ++ ++ Y L+ GH + V+ +F P ++ + S DK +++W DG
Sbjct: 4 GSPEFQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF 63
Query: 126 VRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIA 185
+ S H + +A+S L S S DK +++W ++ G ++ H + V
Sbjct: 64 EKTISGHKLGISDVAWSSDSNLLVS---ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCN 120
Query: 186 FSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTV 245
F+P + SG D V ++ TG+ + +PV+++ ++ G +V+ S G
Sbjct: 121 FNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS-DPVSAVHFNRDGSLIVSSSYDGLC 179
Query: 246 QFYGWPSAS 254
+ W +AS
Sbjct: 180 RI--WDTAS 186
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 67/179 (37%), Gaps = 43/179 (24%)
Query: 62 GLALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSIT 121
L ++GS D + R+W ++ L+ H V+ F+ + I + SYD R+W
Sbjct: 126 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 185
Query: 122 DGASVRVFSDHVSPVLS-IAFSPCGKYL-------------------------------- 148
G ++ D +P +S + FSP GKY+
Sbjct: 186 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYC 245
Query: 149 ------ASGG----TGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGG 197
+GG +GS D V +W++ V+ H V+S A P +AS
Sbjct: 246 IFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 304
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 48/102 (47%), Gaps = 4/102 (3%)
Query: 65 LTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKIT---YIGTGSYDKAVRLWSIT 121
L + D T +LW + L+ + GHK + C + +T +I +GS D V +W++
Sbjct: 214 LAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ 273
Query: 122 DGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLW 163
V+ H V+S A P +AS + DK ++LW
Sbjct: 274 TKEIVQKLQGHTDVVISTACHPTENIIASAALEN-DKTIKLW 314
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 90.5 bits (223), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 102/210 (48%), Gaps = 13/210 (6%)
Query: 47 SGHDMTV----WSVEACSKGLALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPK 102
SGH + + WS ++ L ++ S D T ++W + L+ GH V C F+P+
Sbjct: 58 SGHKLGISDVAWSSDS---NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 114
Query: 103 ITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRL 162
I +GS+D++VR+W + G ++ H PV ++ F+ G + S SYD R+
Sbjct: 115 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS---SSYDGLCRI 171
Query: 163 WSITDGASVRVFSDHVSPVLS-IAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEH 221
W G ++ D +P +S + FSP GKY+ + D + + + G+ + + ++
Sbjct: 172 WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN 231
Query: 222 EPVTSLV-WSVT-GETLVTGSLTGTVQFYG 249
E +SVT G+ +V+GS V +
Sbjct: 232 EKYCIFANFSVTGGKWIVSGSEDNLVYIWN 261
Score = 68.2 bits (165), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 81/174 (46%), Gaps = 7/174 (4%)
Query: 82 YPLRI-FVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIA 140
Y L+ GH + V+ +F P ++ + S DK +++W DG + S H + +A
Sbjct: 9 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 68
Query: 141 FSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDG 200
+S L S S DK +++W ++ G ++ H + V F+P + SG D
Sbjct: 69 WSSDSNLLVS---ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 125
Query: 201 LVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSAS 254
V ++ TG+ + +PV+++ ++ G +V+ S G + W +AS
Sbjct: 126 SVRIWDVKTGKCLKTLPAHS-DPVSAVHFNRDGSLIVSSSYDGLCRI--WDTAS 176
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 67/179 (37%), Gaps = 43/179 (24%)
Query: 62 GLALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSIT 121
L ++GS D + R+W ++ L+ H V+ F+ + I + SYD R+W
Sbjct: 116 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 175
Query: 122 DGASVRVFSDHVSPVLS-IAFSPCGKYL-------------------------------- 148
G ++ D +P +S + FSP GKY+
Sbjct: 176 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYC 235
Query: 149 ------ASGG----TGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGG 197
+GG +GS D V +W++ V+ H V+S A P +AS
Sbjct: 236 IFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 294
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 48/102 (47%), Gaps = 4/102 (3%)
Query: 65 LTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKIT---YIGTGSYDKAVRLWSIT 121
L + D T +LW + L+ + GHK + C + +T +I +GS D V +W++
Sbjct: 204 LAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ 263
Query: 122 DGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLW 163
V+ H V+S A P +AS + DK ++LW
Sbjct: 264 TKEIVQKLQGHTDVVISTACHPTENIIASAALEN-DKTIKLW 304
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 90.5 bits (223), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 102/210 (48%), Gaps = 13/210 (6%)
Query: 47 SGHDMTV----WSVEACSKGLALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPK 102
SGH + + WS ++ L ++ S D T ++W + L+ GH V C F+P+
Sbjct: 63 SGHKLGISDVAWSSDS---NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 119
Query: 103 ITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRL 162
I +GS+D++VR+W + G ++ H PV ++ F+ G + S SYD R+
Sbjct: 120 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS---SSYDGLCRI 176
Query: 163 WSITDGASVRVFSDHVSPVLS-IAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEH 221
W G ++ D +P +S + FSP GKY+ + D + + + G+ + + ++
Sbjct: 177 WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN 236
Query: 222 EPVTSLV-WSVT-GETLVTGSLTGTVQFYG 249
E +SVT G+ +V+GS V +
Sbjct: 237 EKYCIFANFSVTGGKWIVSGSEDNLVYIWN 266
Score = 68.2 bits (165), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 81/174 (46%), Gaps = 7/174 (4%)
Query: 82 YPLRI-FVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIA 140
Y L+ GH + V+ +F P ++ + S DK +++W DG + S H + +A
Sbjct: 14 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 73
Query: 141 FSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDG 200
+S L S S DK +++W ++ G ++ H + V F+P + SG D
Sbjct: 74 WSSDSNLLVS---ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 130
Query: 201 LVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSAS 254
V ++ TG+ + +PV+++ ++ G +V+ S G + W +AS
Sbjct: 131 SVRIWDVKTGKCLKTLPAHS-DPVSAVHFNRDGSLIVSSSYDGLCRI--WDTAS 181
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 67/179 (37%), Gaps = 43/179 (24%)
Query: 62 GLALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSIT 121
L ++GS D + R+W ++ L+ H V+ F+ + I + SYD R+W
Sbjct: 121 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 180
Query: 122 DGASVRVFSDHVSPVLS-IAFSPCGKYL-------------------------------- 148
G ++ D +P +S + FSP GKY+
Sbjct: 181 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYC 240
Query: 149 ------ASGG----TGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGG 197
+GG +GS D V +W++ V+ H V+S A P +AS
Sbjct: 241 IFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 299
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 48/102 (47%), Gaps = 4/102 (3%)
Query: 65 LTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKIT---YIGTGSYDKAVRLWSIT 121
L + D T +LW + L+ + GHK + C + +T +I +GS D V +W++
Sbjct: 209 LAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ 268
Query: 122 DGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLW 163
V+ H V+S A P +AS + DK ++LW
Sbjct: 269 TKEIVQKLQGHTDVVISTACHPTENIIASAALEN-DKTIKLW 309
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 90.1 bits (222), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 56/201 (27%), Positives = 100/201 (49%), Gaps = 13/201 (6%)
Query: 47 SGHDMTV----WSVEACSKGLALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPK 102
SGH + + WS ++ L ++ S D T ++W + L+ GH V C F+P+
Sbjct: 79 SGHKLGISDVAWSSDS---NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 135
Query: 103 ITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRL 162
I +GS+D++VR+W + G ++ H PV ++ F+ G + S SYD R+
Sbjct: 136 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS---SSYDGLCRI 192
Query: 163 WSITDGASVRVFSDHVSPVLS-IAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEH 221
W G ++ D +P +S + FSP GKY+ + D + + + G+ + + ++
Sbjct: 193 WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN 252
Query: 222 EPVTSLV-WSVT-GETLVTGS 240
E +SVT G+ +V+GS
Sbjct: 253 EKYCIFANFSVTGGKWIVSGS 273
Score = 68.2 bits (165), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 81/174 (46%), Gaps = 7/174 (4%)
Query: 82 YPLRI-FVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIA 140
Y L+ GH + V+ +F P ++ + S DK +++W DG + S H + +A
Sbjct: 30 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 89
Query: 141 FSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDG 200
+S L S S DK +++W ++ G ++ H + V F+P + SG D
Sbjct: 90 WSSDSNLLVS---ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 146
Query: 201 LVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSAS 254
V ++ TG+ + +PV+++ ++ G +V+ S G + W +AS
Sbjct: 147 SVRIWDVKTGKCLKTLPAHS-DPVSAVHFNRDGSLIVSSSYDGLCRI--WDTAS 197
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 67/179 (37%), Gaps = 43/179 (24%)
Query: 62 GLALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSIT 121
L ++GS D + R+W ++ L+ H V+ F+ + I + SYD R+W
Sbjct: 137 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 196
Query: 122 DGASVRVFSDHVSPVLS-IAFSPCGKYL-------------------------------- 148
G ++ D +P +S + FSP GKY+
Sbjct: 197 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYC 256
Query: 149 ------ASGG----TGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGG 197
+GG +GS D V +W++ V+ H V+S A P +AS
Sbjct: 257 IFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 315
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 48/102 (47%), Gaps = 4/102 (3%)
Query: 65 LTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKIT---YIGTGSYDKAVRLWSIT 121
L + D T +LW + L+ + GHK + C + +T +I +GS D V +W++
Sbjct: 225 LAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ 284
Query: 122 DGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLW 163
V+ H V+S A P +AS + DK ++LW
Sbjct: 285 TKEIVQKLQGHTDVVISTACHPTENIIASAALEN-DKTIKLW 325
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 102/210 (48%), Gaps = 13/210 (6%)
Query: 47 SGHDMTV----WSVEACSKGLALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPK 102
SGH + + WS ++ L ++ S D T ++W + L+ GH V C F+P+
Sbjct: 68 SGHKLGISDVAWSSDS---NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 124
Query: 103 ITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRL 162
I +GS+D++VR+W + G ++ H PV ++ F+ G + S SYD R+
Sbjct: 125 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS---SSYDGLCRI 181
Query: 163 WSITDGASVRVFSDHVSPVLS-IAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEH 221
W G ++ D +P +S + FSP GKY+ + D + + + G+ + + ++
Sbjct: 182 WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN 241
Query: 222 EPVTSLV-WSVT-GETLVTGSLTGTVQFYG 249
E +SVT G+ +V+GS V +
Sbjct: 242 EKYCIFANFSVTGGKWIVSGSEDNLVYIWN 271
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 88/189 (46%), Gaps = 7/189 (3%)
Query: 67 GSRDTTARLWSLEQMYPLRI-FVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGAS 125
GS T ++ ++ Y L+ GH + V+ +F P ++ + S DK +++W DG
Sbjct: 4 GSSATQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF 63
Query: 126 VRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIA 185
+ S H + +A+S L S S DK +++W ++ G ++ H + V
Sbjct: 64 EKTISGHKLGISDVAWSSDSNLLVS---ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCN 120
Query: 186 FSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTV 245
F+P + SG D V ++ TG+ + +PV+++ ++ G +V+ S G
Sbjct: 121 FNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS-DPVSAVHFNRDGSLIVSSSYDGLC 179
Query: 246 QFYGWPSAS 254
+ W +AS
Sbjct: 180 RI--WDTAS 186
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 67/179 (37%), Gaps = 43/179 (24%)
Query: 62 GLALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSIT 121
L ++GS D + R+W ++ L+ H V+ F+ + I + SYD R+W
Sbjct: 126 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 185
Query: 122 DGASVRVFSDHVSPVLS-IAFSPCGKYL-------------------------------- 148
G ++ D +P +S + FSP GKY+
Sbjct: 186 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYC 245
Query: 149 ------ASGG----TGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGG 197
+GG +GS D V +W++ V+ H V+S A P +AS
Sbjct: 246 IFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 304
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 48/102 (47%), Gaps = 4/102 (3%)
Query: 65 LTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKIT---YIGTGSYDKAVRLWSIT 121
L + D T +LW + L+ + GHK + C + +T +I +GS D V +W++
Sbjct: 214 LAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ 273
Query: 122 DGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLW 163
V+ H V+S A P +AS + DK ++LW
Sbjct: 274 TKEIVQKLQGHTDVVISTACHPTENIIASAALEN-DKTIKLW 314
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/201 (27%), Positives = 100/201 (49%), Gaps = 13/201 (6%)
Query: 47 SGHDMTV----WSVEACSKGLALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPK 102
SGH + + WS ++ L ++ S D T ++W + L+ GH V C F+P+
Sbjct: 65 SGHKLGISDVAWSSDS---NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 121
Query: 103 ITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRL 162
I +GS+D++VR+W + G ++ H PV ++ F+ G + S SYD R+
Sbjct: 122 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS---SSYDGLCRI 178
Query: 163 WSITDGASVRVFSDHVSPVLS-IAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEH 221
W G ++ D +P +S + FSP GKY+ + D + + + G+ + + ++
Sbjct: 179 WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN 238
Query: 222 EPVTSLV-WSVT-GETLVTGS 240
E +SVT G+ +V+GS
Sbjct: 239 EKYCIFANFSVTGGKWIVSGS 259
Score = 68.2 bits (165), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 81/174 (46%), Gaps = 7/174 (4%)
Query: 82 YPLRI-FVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIA 140
Y L+ GH + V+ +F P ++ + S DK +++W DG + S H + +A
Sbjct: 16 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 75
Query: 141 FSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDG 200
+S L S S DK +++W ++ G ++ H + V F+P + SG D
Sbjct: 76 WSSDSNLLVS---ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 132
Query: 201 LVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSAS 254
V ++ TG+ + +PV+++ ++ G +V+ S G + W +AS
Sbjct: 133 SVRIWDVKTGKCLKTLPAHS-DPVSAVHFNRDGSLIVSSSYDGLCRI--WDTAS 183
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 67/178 (37%), Gaps = 43/178 (24%)
Query: 63 LALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITD 122
L ++GS D + R+W ++ L+ H V+ F+ + I + SYD R+W
Sbjct: 124 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 183
Query: 123 GASVRVFSDHVSPVLS-IAFSPCGKYL--------------------------------- 148
G ++ D +P +S + FSP GKY+
Sbjct: 184 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 243
Query: 149 -----ASGG----TGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGG 197
+GG +GS D V +W++ V+ H V+S A P +AS
Sbjct: 244 FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 301
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 48/102 (47%), Gaps = 4/102 (3%)
Query: 65 LTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKIT---YIGTGSYDKAVRLWSIT 121
L + D T +LW + L+ + GHK + C + +T +I +GS D V +W++
Sbjct: 211 LAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ 270
Query: 122 DGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLW 163
V+ H V+S A P +AS + DK ++L+
Sbjct: 271 TKEIVQKLQGHTDVVISTACHPTENIIASAALEN-DKTIKLY 311
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 102/210 (48%), Gaps = 13/210 (6%)
Query: 47 SGHDMTV----WSVEACSKGLALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPK 102
SGH + + WS ++ L ++ S D T ++W + L+ GH V C F+P+
Sbjct: 65 SGHKLGISDVAWSSDS---NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 121
Query: 103 ITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRL 162
I +GS+D++VR+W + G ++ H PV ++ F+ G + S SYD R+
Sbjct: 122 SNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVS---SSYDGLCRI 178
Query: 163 WSITDGASVRVFSDHVSPVLS-IAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEH 221
W G ++ D +P +S + FSP GKY+ + D + + + G+ + + ++
Sbjct: 179 WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN 238
Query: 222 EPVTSLV-WSVT-GETLVTGSLTGTVQFYG 249
E +SVT G+ +V+GS V +
Sbjct: 239 EKYCIFANFSVTGGKWIVSGSEDNMVYIWN 268
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 77/168 (45%), Gaps = 6/168 (3%)
Query: 87 FVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGK 146
GH + V+ +F P ++ + S DK +++W DG + S H + +A+S
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 81
Query: 147 YLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHE 206
L S S DK +++W ++ G ++ H + V F+P + SG D V +
Sbjct: 82 LLVS---ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 138
Query: 207 LTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSAS 254
+ TG + +PV+++ ++ G +V+ S G + W +AS
Sbjct: 139 VKTGMCLKTLPAHS-DPVSAVHFNRDGSLIVSSSYDGLCRI--WDTAS 183
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 67/179 (37%), Gaps = 43/179 (24%)
Query: 62 GLALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSIT 121
L ++GS D + R+W ++ L+ H V+ F+ + I + SYD R+W
Sbjct: 123 NLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 182
Query: 122 DGASVRVFSDHVSPVLS-IAFSPCGKYL-------------------------------- 148
G ++ D +P +S + FSP GKY+
Sbjct: 183 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYC 242
Query: 149 ------ASGG----TGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGG 197
+GG +GS D V +W++ V+ H V+S A P +AS
Sbjct: 243 IFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 301
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 48/102 (47%), Gaps = 4/102 (3%)
Query: 65 LTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKIT---YIGTGSYDKAVRLWSIT 121
L + D T +LW + L+ + GHK + C + +T +I +GS D V +W++
Sbjct: 211 LAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQ 270
Query: 122 DGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLW 163
V+ H V+S A P +AS + DK ++LW
Sbjct: 271 TKEIVQKLQGHTDVVISTACHPTENIIASAALEN-DKTIKLW 311
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 102/210 (48%), Gaps = 13/210 (6%)
Query: 47 SGHDMTV----WSVEACSKGLALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPK 102
SGH + + WS ++ L ++ S D T ++W + L+ GH V C F+P+
Sbjct: 62 SGHKLGISDVAWSSDS---NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 118
Query: 103 ITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRL 162
I +GS+D++VR+W + G ++ H PV ++ F+ G + S SYD R+
Sbjct: 119 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS---SSYDGLCRI 175
Query: 163 WSITDGASVRVFSDHVSPVLS-IAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEH 221
W G ++ D +P +S + FSP GKY+ + D + + + G+ + + ++
Sbjct: 176 WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN 235
Query: 222 EPVTSLV-WSVT-GETLVTGSLTGTVQFYG 249
E +SVT G+ +V+GS V +
Sbjct: 236 EKYCIFANFSVTGGKWIVSGSEDNLVYIWN 265
Score = 68.2 bits (165), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 81/174 (46%), Gaps = 7/174 (4%)
Query: 82 YPLRI-FVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIA 140
Y L+ GH + V+ +F P ++ + S DK +++W DG + S H + +A
Sbjct: 13 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 72
Query: 141 FSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDG 200
+S L S S DK +++W ++ G ++ H + V F+P + SG D
Sbjct: 73 WSSDSNLLVS---ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 129
Query: 201 LVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSAS 254
V ++ TG+ + +PV+++ ++ G +V+ S G + W +AS
Sbjct: 130 SVRIWDVKTGKCLKTLPAHS-DPVSAVHFNRDGSLIVSSSYDGLCRI--WDTAS 180
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 67/179 (37%), Gaps = 43/179 (24%)
Query: 62 GLALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSIT 121
L ++GS D + R+W ++ L+ H V+ F+ + I + SYD R+W
Sbjct: 120 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 179
Query: 122 DGASVRVFSDHVSPVLS-IAFSPCGKYL-------------------------------- 148
G ++ D +P +S + FSP GKY+
Sbjct: 180 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYC 239
Query: 149 ------ASGG----TGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGG 197
+GG +GS D V +W++ V+ H V+S A P +AS
Sbjct: 240 IFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 298
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 48/102 (47%), Gaps = 4/102 (3%)
Query: 65 LTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKIT---YIGTGSYDKAVRLWSIT 121
L + D T +LW + L+ + GHK + C + +T +I +GS D V +W++
Sbjct: 208 LAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ 267
Query: 122 DGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLW 163
V+ H V+S A P +AS + DK ++LW
Sbjct: 268 TKEIVQKLQGHTDVVISTACHPTENIIASAALEN-DKTIKLW 308
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 102/210 (48%), Gaps = 13/210 (6%)
Query: 47 SGHDMTV----WSVEACSKGLALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPK 102
SGH + + WS ++ L ++ S D T ++W + L+ GH V C F+P+
Sbjct: 68 SGHKLGISDVAWSSDS---NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 124
Query: 103 ITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRL 162
I +GS+D++VR+W + G ++ H PV ++ F+ G + S SYD R+
Sbjct: 125 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS---SSYDGLCRI 181
Query: 163 WSITDGASVRVFSDHVSPVLS-IAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEH 221
W G ++ D +P +S + FSP GKY+ + D + + + G+ + + ++
Sbjct: 182 WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN 241
Query: 222 EPVTSLV-WSVT-GETLVTGSLTGTVQFYG 249
E +SVT G+ +V+GS V +
Sbjct: 242 EKYCIFANFSVTGGKWIVSGSEDNLVYIWN 271
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 88/189 (46%), Gaps = 7/189 (3%)
Query: 67 GSRDTTARLWSLEQMYPLRI-FVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGAS 125
GS T ++ ++ Y L+ GH + V+ +F P ++ + S DK +++W DG
Sbjct: 4 GSSATQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF 63
Query: 126 VRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIA 185
+ S H + +A+S L S S DK +++W ++ G ++ H + V
Sbjct: 64 EKTISGHKLGISDVAWSSDSNLLVS---ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCN 120
Query: 186 FSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTV 245
F+P + SG D V ++ TG+ + +PV+++ ++ G +V+ S G
Sbjct: 121 FNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS-DPVSAVHFNRDGSLIVSSSYDGLC 179
Query: 246 QFYGWPSAS 254
+ W +AS
Sbjct: 180 RI--WDTAS 186
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 67/179 (37%), Gaps = 43/179 (24%)
Query: 62 GLALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSIT 121
L ++GS D + R+W ++ L+ H V+ F+ + I + SYD R+W
Sbjct: 126 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 185
Query: 122 DGASVRVFSDHVSPVLS-IAFSPCGKYL-------------------------------- 148
G ++ D +P +S + FSP GKY+
Sbjct: 186 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYC 245
Query: 149 ------ASGG----TGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGG 197
+GG +GS D V +W++ V+ H V+S A P +AS
Sbjct: 246 IFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 304
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 48/102 (47%), Gaps = 4/102 (3%)
Query: 65 LTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKIT---YIGTGSYDKAVRLWSIT 121
L + D T +LW + L+ + GHK + C + +T +I +GS D V +W++
Sbjct: 214 LAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ 273
Query: 122 DGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLW 163
V+ H V+S A P +AS + DK ++LW
Sbjct: 274 TKEIVQKLQGHTDVVISTACHPTENIIASAALEN-DKTIKLW 314
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 102/210 (48%), Gaps = 13/210 (6%)
Query: 47 SGHDMTV----WSVEACSKGLALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPK 102
SGH + + WS ++ L ++ S D T ++W + L+ GH V C F+P+
Sbjct: 67 SGHKLGISDVAWSSDS---NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 123
Query: 103 ITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRL 162
I +GS+D++VR+W + G ++ H PV ++ F+ G + S SYD R+
Sbjct: 124 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS---SSYDGLCRI 180
Query: 163 WSITDGASVRVFSDHVSPVLS-IAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEH 221
W G ++ D +P +S + FSP GKY+ + D + + + G+ + + ++
Sbjct: 181 WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN 240
Query: 222 EPVTSLV-WSVT-GETLVTGSLTGTVQFYG 249
E +SVT G+ +V+GS V +
Sbjct: 241 EKYCIFANFSVTGGKWIVSGSEDNLVYIWN 270
Score = 68.2 bits (165), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 81/174 (46%), Gaps = 7/174 (4%)
Query: 82 YPLRI-FVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIA 140
Y L+ GH + V+ +F P ++ + S DK +++W DG + S H + +A
Sbjct: 18 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 77
Query: 141 FSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDG 200
+S L S S DK +++W ++ G ++ H + V F+P + SG D
Sbjct: 78 WSSDSNLLVS---ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 134
Query: 201 LVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSAS 254
V ++ TG+ + +PV+++ ++ G +V+ S G + W +AS
Sbjct: 135 SVRIWDVKTGKCLKTLPAHS-DPVSAVHFNRDGSLIVSSSYDGLCRI--WDTAS 185
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 67/179 (37%), Gaps = 43/179 (24%)
Query: 62 GLALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSIT 121
L ++GS D + R+W ++ L+ H V+ F+ + I + SYD R+W
Sbjct: 125 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 184
Query: 122 DGASVRVFSDHVSPVLS-IAFSPCGKYL-------------------------------- 148
G ++ D +P +S + FSP GKY+
Sbjct: 185 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYC 244
Query: 149 ------ASGG----TGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGG 197
+GG +GS D V +W++ V+ H V+S A P +AS
Sbjct: 245 IFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 303
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 48/102 (47%), Gaps = 4/102 (3%)
Query: 65 LTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKIT---YIGTGSYDKAVRLWSIT 121
L + D T +LW + L+ + GHK + C + +T +I +GS D V +W++
Sbjct: 213 LAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ 272
Query: 122 DGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLW 163
V+ H V+S A P +AS + DK ++LW
Sbjct: 273 TKEIVQKLQGHTDVVISTACHPTENIIASAALEN-DKTIKLW 313
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/201 (27%), Positives = 100/201 (49%), Gaps = 13/201 (6%)
Query: 47 SGHDMTV----WSVEACSKGLALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPK 102
SGH + + WS ++ L ++ S D T ++W + L+ GH V C F+P+
Sbjct: 65 SGHKLGISDVAWSSDS---NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 121
Query: 103 ITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRL 162
I +GS+D++VR+W + G ++ H PV ++ F+ G + S SYD R+
Sbjct: 122 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS---SSYDGLCRI 178
Query: 163 WSITDGASVRVFSDHVSPVLS-IAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEH 221
W G ++ D +P +S + FSP GKY+ + D + + + G+ + + ++
Sbjct: 179 WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN 238
Query: 222 EPVTSLV-WSVT-GETLVTGS 240
E +SVT G+ +V+GS
Sbjct: 239 EKYCIFANFSVTGGKWIVSGS 259
Score = 68.2 bits (165), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 81/174 (46%), Gaps = 7/174 (4%)
Query: 82 YPLRI-FVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIA 140
Y L+ GH + V+ +F P ++ + S DK +++W DG + S H + +A
Sbjct: 16 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 75
Query: 141 FSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDG 200
+S L S S DK +++W ++ G ++ H + V F+P + SG D
Sbjct: 76 WSSDSNLLVS---ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 132
Query: 201 LVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSAS 254
V ++ TG+ + +PV+++ ++ G +V+ S G + W +AS
Sbjct: 133 SVRIWDVKTGKCLKTLPAHS-DPVSAVHFNRDGSLIVSSSYDGLCRI--WDTAS 183
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 67/178 (37%), Gaps = 43/178 (24%)
Query: 63 LALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITD 122
L ++GS D + R+W ++ L+ H V+ F+ + I + SYD R+W
Sbjct: 124 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 183
Query: 123 GASVRVFSDHVSPVLS-IAFSPCGKYL--------------------------------- 148
G ++ D +P +S + FSP GKY+
Sbjct: 184 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 243
Query: 149 -----ASGG----TGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGG 197
+GG +GS D V +W++ V+ H V+S A P +AS
Sbjct: 244 FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 301
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 47/101 (46%), Gaps = 4/101 (3%)
Query: 65 LTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKIT---YIGTGSYDKAVRLWSIT 121
L + D T +LW + L+ + GHK + C + +T +I +GS D V +W++
Sbjct: 211 LAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ 270
Query: 122 DGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRL 162
V+ H V+S A P +AS + DK ++L
Sbjct: 271 TKEIVQKLQGHTDVVISTACHPTENIIASAALEN-DKTIKL 310
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/209 (27%), Positives = 102/209 (48%), Gaps = 13/209 (6%)
Query: 47 SGHDMTV----WSVEACSKGLALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPK 102
SGH + + WS ++ L ++ S D T ++W + L+ GH V C F+P+
Sbjct: 61 SGHKLGISDVAWSSDS---NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 117
Query: 103 ITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRL 162
I +GS+D++VR+W + G ++ H PV ++ F+ G + S SYD R+
Sbjct: 118 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS---SSYDGLCRI 174
Query: 163 WSITDGASVRVFSDHVSPVLS-IAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEH 221
W G ++ D +P +S + FSP GKY+ + D + + + G+ + + ++
Sbjct: 175 WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN 234
Query: 222 EPVTSLV-WSVT-GETLVTGSLTGTVQFY 248
E +SVT G+ +V+GS V +
Sbjct: 235 EKYCIFANFSVTGGKWIVSGSEDNLVYIW 263
Score = 68.2 bits (165), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 81/174 (46%), Gaps = 7/174 (4%)
Query: 82 YPLRI-FVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIA 140
Y L+ GH + V+ +F P ++ + S DK +++W DG + S H + +A
Sbjct: 12 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 71
Query: 141 FSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDG 200
+S L S S DK +++W ++ G ++ H + V F+P + SG D
Sbjct: 72 WSSDSNLLVS---ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 128
Query: 201 LVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSAS 254
V ++ TG+ + +PV+++ ++ G +V+ S G + W +AS
Sbjct: 129 SVRIWDVKTGKCLKTLPAHS-DPVSAVHFNRDGSLIVSSSYDGLCRI--WDTAS 179
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 67/178 (37%), Gaps = 43/178 (24%)
Query: 63 LALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITD 122
L ++GS D + R+W ++ L+ H V+ F+ + I + SYD R+W
Sbjct: 120 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 179
Query: 123 GASVRVFSDHVSPVLS-IAFSPCGKYL--------------------------------- 148
G ++ D +P +S + FSP GKY+
Sbjct: 180 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 239
Query: 149 -----ASGG----TGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGG 197
+GG +GS D V +W++ V+ H V+S A P +AS
Sbjct: 240 FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 297
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 48/102 (47%), Gaps = 4/102 (3%)
Query: 65 LTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKIT---YIGTGSYDKAVRLWSIT 121
L + D T +LW + L+ + GHK + C + +T +I +GS D V +W++
Sbjct: 207 LAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ 266
Query: 122 DGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLW 163
V+ H V+S A P +AS + DK ++LW
Sbjct: 267 TKEIVQKLQGHTDVVISTACHPTENIIASAALEN-DKTIKLW 307
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/201 (27%), Positives = 100/201 (49%), Gaps = 13/201 (6%)
Query: 47 SGHDMTV----WSVEACSKGLALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPK 102
SGH + + WS ++ L ++ S D T ++W + L+ GH V C F+P+
Sbjct: 65 SGHKLGISDVAWSSDS---NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 121
Query: 103 ITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRL 162
I +GS+D++VR+W + G ++ H PV ++ F+ G + S SYD R+
Sbjct: 122 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS---SSYDGLCRI 178
Query: 163 WSITDGASVRVFSDHVSPVLS-IAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEH 221
W G ++ D +P +S + FSP GKY+ + D + + + G+ + + ++
Sbjct: 179 WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN 238
Query: 222 EPVTSLV-WSVT-GETLVTGS 240
E +SVT G+ +V+GS
Sbjct: 239 EKYCIFANFSVTGGKWIVSGS 259
Score = 67.8 bits (164), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 80/174 (45%), Gaps = 7/174 (4%)
Query: 82 YPLRI-FVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIA 140
Y L+ GH + V+ +F P ++ S DK +++W DG + S H + +A
Sbjct: 16 YALKFTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVA 75
Query: 141 FSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDG 200
+S L S S DK +++W ++ G ++ H + V F+P + SG D
Sbjct: 76 WSSDSNLLVS---ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 132
Query: 201 LVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSAS 254
V ++ TG+ + +PV+++ ++ G +V+ S G + W +AS
Sbjct: 133 SVRIWDVKTGKCLKTLPAHS-DPVSAVHFNRDGSLIVSSSYDGLCRI--WDTAS 183
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 67/178 (37%), Gaps = 43/178 (24%)
Query: 63 LALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITD 122
L ++GS D + R+W ++ L+ H V+ F+ + I + SYD R+W
Sbjct: 124 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 183
Query: 123 GASVRVFSDHVSPVLS-IAFSPCGKYL--------------------------------- 148
G ++ D +P +S + FSP GKY+
Sbjct: 184 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 243
Query: 149 -----ASGG----TGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGG 197
+GG +GS D V +W++ V+ H V+S A P +AS
Sbjct: 244 FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 301
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 48/102 (47%), Gaps = 4/102 (3%)
Query: 65 LTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKIT---YIGTGSYDKAVRLWSIT 121
L + D T +LW + L+ + GHK + C + +T +I +GS D V +W++
Sbjct: 211 LAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ 270
Query: 122 DGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLW 163
V+ H V+S A P +AS + DK ++LW
Sbjct: 271 TKEIVQKLQGHTDVVISTACHPTENIIASAALEN-DKTIKLW 311
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 102/210 (48%), Gaps = 13/210 (6%)
Query: 47 SGHDMTV----WSVEACSKGLALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPK 102
SGH + + WS ++ L ++ S D T ++W + L+ GH V C F+P+
Sbjct: 65 SGHKLGISDVAWSSDS---NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 121
Query: 103 ITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRL 162
I +GS+D++VR+W + G ++ H PV ++ F+ G + S SYD R+
Sbjct: 122 SNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVS---SSYDGLCRI 178
Query: 163 WSITDGASVRVFSDHVSPVLS-IAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEH 221
W G ++ D +P +S + FSP GKY+ + D + + + G+ + + ++
Sbjct: 179 WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHKN 238
Query: 222 EPVTSLV-WSVT-GETLVTGSLTGTVQFYG 249
E +SVT G+ +V+GS V +
Sbjct: 239 EKYCIFANFSVTGGKWIVSGSEDNMVYIWN 268
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 77/168 (45%), Gaps = 6/168 (3%)
Query: 87 FVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGK 146
GH + V+ +F P ++ + S DK +++W DG + S H + +A+S
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 81
Query: 147 YLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHE 206
L S S DK +++W ++ G ++ H + V F+P + SG D V +
Sbjct: 82 LLVS---ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 138
Query: 207 LTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSAS 254
+ TG + +PV+++ ++ G +V+ S G + W +AS
Sbjct: 139 VKTGMCLKTLPAHS-DPVSAVHFNRDGSLIVSSSYDGLCRI--WDTAS 183
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 67/179 (37%), Gaps = 43/179 (24%)
Query: 62 GLALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSIT 121
L ++GS D + R+W ++ L+ H V+ F+ + I + SYD R+W
Sbjct: 123 NLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 182
Query: 122 DGASVRVFSDHVSPVLS-IAFSPCGKYL-------------------------------- 148
G ++ D +P +S + FSP GKY+
Sbjct: 183 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEKYC 242
Query: 149 ------ASGG----TGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGG 197
+GG +GS D V +W++ V+ H V+S A P +AS
Sbjct: 243 IFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 301
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 4/102 (3%)
Query: 65 LTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKIT---YIGTGSYDKAVRLWSIT 121
L + D +LW + L+ + GHK + C + +T +I +GS D V +W++
Sbjct: 211 LAATLDNDLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQ 270
Query: 122 DGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLW 163
V+ H V+S A P +AS + DK ++LW
Sbjct: 271 TKEIVQKLQGHTDVVISTACHPTENIIASAALEN-DKTIKLW 311
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 66/209 (31%), Positives = 102/209 (48%), Gaps = 21/209 (10%)
Query: 47 SGHDMTVWSVEACSKGLAL-TGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITY 105
+GH +VW V G + + S D T +LW+ L+ GH V F P
Sbjct: 177 TGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQL-LQTLTGHSSSVRGVAFSPDGQT 235
Query: 106 IGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSI 165
I + S DK V+LW+ +G ++ + H S V +AF P G+ +AS S DK V+LW+
Sbjct: 236 IASASDDKTVKLWN-RNGQLLQTLTGHSSSVNGVAFRPDGQTIAS---ASDDKTVKLWN- 290
Query: 166 TDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRF--HLQEHEP 223
+G ++ + H S V +AFSP G+ +AS +D V ++ +R HLQ
Sbjct: 291 RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTV--------KLWNRNGQHLQTLTG 342
Query: 224 VTSLVWSVT----GETLVTGSLTGTVQFY 248
+S VW V G+T+ + S TV+ +
Sbjct: 343 HSSSVWGVAFSPDGQTIASASDDKTVKLW 371
Score = 84.7 bits (208), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 54/157 (34%), Positives = 81/157 (51%), Gaps = 7/157 (4%)
Query: 47 SGHDMTVWSVEACSKGLAL-TGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITY 105
+GH +VW V G + + S D T +LW+ L+ GH V F P
Sbjct: 54 TGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQL-LQTLTGHSSSVRGVAFSPDGQT 112
Query: 106 IGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSI 165
I + S DK V+LW+ +G ++ + H S V +AFSP G+ +AS S DK V+LW+
Sbjct: 113 IASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIAS---ASDDKTVKLWN- 167
Query: 166 TDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLV 202
+G ++ + H S V +AFSP G+ +AS +D V
Sbjct: 168 RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTV 204
Score = 82.4 bits (202), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 56/168 (33%), Positives = 84/168 (50%), Gaps = 8/168 (4%)
Query: 36 NLQSRYLPYYTSGHDMTVWSVEACSKGLAL-TGSRDTTARLWSLEQMYPLRIFVGHKQDV 94
N ++L T GH +VW V G + + S D T +LW+ L+ GH V
Sbjct: 331 NRNGQHLQTLT-GHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQL-LQTLTGHSSSV 388
Query: 95 TCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTG 154
F P I + S DK V+LW+ +G ++ + H S V +AFSP + +AS
Sbjct: 389 RGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDDQTIAS---A 444
Query: 155 SYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLV 202
S DK V+LW+ +G ++ + H S V +AFSP G+ +AS +D V
Sbjct: 445 SDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTV 491
Score = 78.2 bits (191), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 60/189 (31%), Positives = 93/189 (49%), Gaps = 20/189 (10%)
Query: 66 TGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGAS 125
+ S D T +LW+ L+ GH V F P I + S DK V+LW+ +G
Sbjct: 33 SASDDKTVKLWNRNGQL-LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQL 90
Query: 126 VRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIA 185
++ + H S V +AFSP G+ +AS S DK V+LW+ +G ++ + H S V +A
Sbjct: 91 LQTLTGHSSSVRGVAFSPDGQTIAS---ASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVA 146
Query: 186 FSPCGKYLASGGEDGLVLTHELTTGRVISRFH--LQEHEPVTSLVWSVT----GETLVTG 239
FSP G+ +AS +D V ++ +R LQ +S VW V G+T+ +
Sbjct: 147 FSPDGQTIASASDDKTV--------KLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASA 198
Query: 240 SLTGTVQFY 248
S TV+ +
Sbjct: 199 SDDKTVKLW 207
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 59/119 (49%), Gaps = 6/119 (5%)
Query: 47 SGHDMTVWSVEACSKGLAL-TGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITY 105
+GH +V V G + + S D T +LW+ L+ GH V F P
Sbjct: 464 TGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQL-LQTLTGHSSSVRGVAFSPDGQT 522
Query: 106 IGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWS 164
I + S DK V+LW+ +G ++ + H S V +AFSP G+ +AS S DK V+LW+
Sbjct: 523 IASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIAS---ASSDKTVKLWN 577
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 85.5 bits (210), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 65/227 (28%), Positives = 104/227 (45%), Gaps = 13/227 (5%)
Query: 30 NLESQKNLQSRYLPYYTSGHDMTVWSV-----EACSKGLALTGSRDTTARLWSL--EQMY 82
NL Q Q L HD +WSV + + +TGS D ++W E++
Sbjct: 12 NLYFQGTNQYGILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLD 71
Query: 83 PLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFS 142
GH+ V + + S D +RLW + +G ++ ++AFS
Sbjct: 72 LQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFS 131
Query: 143 PCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLV 202
P +YLA TG++ V ++ + G +LSIA+SP GKYLASG DG++
Sbjct: 132 PDSQYLA---TGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGII 188
Query: 203 LTHELTTGRVISRFHLQEHE-PVTSLVWSVTGETLVTGSLTGTVQFY 248
++ TG+++ L+ H P+ SL +S + LVT S G ++ Y
Sbjct: 189 NIFDIATGKLLHT--LEGHAMPIRSLTFSPDSQLLVTASDDGYIKIY 233
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 78/167 (46%), Gaps = 4/167 (2%)
Query: 42 LPYYTSGHDMTVWSVE-ACSKGLALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFH 100
L + GH + V SV+ + + +A + S D RLW LE ++ D F
Sbjct: 72 LQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFS 131
Query: 101 PKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAV 160
P Y+ TG++ V ++ + G +LSIA+SP GKYLAS G+ D +
Sbjct: 132 PDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLAS---GAIDGII 188
Query: 161 RLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHEL 207
++ I G + H P+ S+ FSP + L + +DG + +++
Sbjct: 189 NIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDV 235
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 55/134 (41%), Gaps = 3/134 (2%)
Query: 66 TGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGAS 125
+G+ D ++ + L GH + F P + T S D ++++ +
Sbjct: 181 SGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANL 240
Query: 126 VRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIA 185
S H S VL++AF P + S + +V++W + V F DH V +
Sbjct: 241 AGTLSGHASWVLNVAFCPDDTHFVSSSSDK---SVKVWDVGTRTCVHTFFDHQDQVWGVK 297
Query: 186 FSPCGKYLASGGED 199
++ G + S G+D
Sbjct: 298 YNGNGSKIVSVGDD 311
Score = 28.1 bits (61), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 48/112 (42%), Gaps = 1/112 (0%)
Query: 42 LPYYTSGHDMTVWSVE-ACSKGLALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFH 100
L + GH M + S+ + L +T S D +++ ++ GH V F
Sbjct: 198 LLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFC 257
Query: 101 PKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGG 152
P T+ + S DK+V++W + V F DH V + ++ G + S G
Sbjct: 258 PDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVG 309
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 81.6 bits (200), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 59/219 (26%), Positives = 100/219 (45%), Gaps = 19/219 (8%)
Query: 48 GHDMTVWSVEACSKGLAL-TGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYI 106
GHD V SV G + + SRD T ++W ++ Y ++ F GH++ V R + T I
Sbjct: 190 GHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLI 249
Query: 107 GTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKY----LASGG---------- 152
+ S D+ VR+W + +H V I+++P Y A+G
Sbjct: 250 ASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGP 309
Query: 153 ---TGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTT 209
+GS DK +++W ++ G + H + V + F GK++ S +D + +
Sbjct: 310 FLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKN 369
Query: 210 GRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFY 248
R + + EH VTSL + T +VTGS+ TV+ +
Sbjct: 370 KRCMKTLNAHEH-FVTSLDFHKTAPYVVTGSVDQTVKVW 407
Score = 64.7 bits (156), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 55/128 (42%), Gaps = 3/128 (2%)
Query: 89 GHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYL 148
GH+ VT FHP + + + S D +++W G R H V I+F GK L
Sbjct: 106 GHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLL 165
Query: 149 ASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELT 208
AS S D ++LW +R H V S++ P G ++ S D + E+
Sbjct: 166 AS---CSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQ 222
Query: 209 TGRVISRF 216
TG + F
Sbjct: 223 TGYCVKTF 230
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 67/166 (40%), Gaps = 5/166 (3%)
Query: 63 LALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITD 122
+ ++ S D T ++W E R GH V F + + S D ++LW
Sbjct: 122 VMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQG 181
Query: 123 GASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVL 182
+R H V S++ P G ++ S S DK +++W + G V+ F+ H V
Sbjct: 182 FECIRTMHGHDHNVSSVSIMPNGDHIVS---ASRDKTIKMWEVQTGYCVKTFTGHREWVR 238
Query: 183 SIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLV 228
+ + G +AS D V + T + L+EH V +
Sbjct: 239 MVRPNQDGTLIASCSNDQTVRVWVVATKEC--KAELREHRHVVECI 282
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/187 (22%), Positives = 73/187 (39%), Gaps = 24/187 (12%)
Query: 37 LQSRYLPYYTSGHDMTVWSVEACSKG-LALTGSRDTTARLWSLEQMYPLRIFVGHKQDVT 95
+Q+ Y +GH V V G L + S D T R+W + H+ V
Sbjct: 221 VQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVE 280
Query: 96 CARFHPKITY--------------------IGTGSYDKAVRLWSITDGASVRVFSDHVSP 135
C + P+ +Y + +GS DK +++W ++ G + H +
Sbjct: 281 CISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNW 340
Query: 136 VLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLAS 195
V + F GK++ S DK +R+W + ++ + H V S+ F Y+ +
Sbjct: 341 VRGVLFHSGGKFILSCAD---DKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVT 397
Query: 196 GGEDGLV 202
G D V
Sbjct: 398 GSVDQTV 404
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 77.8 bits (190), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 60/189 (31%), Positives = 93/189 (49%), Gaps = 9/189 (4%)
Query: 47 SGHDMTVWSVEACSKG-LALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITY 105
+GH V V S G AL+GS D RLW L R FVGH +DV F
Sbjct: 427 TGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQ 486
Query: 106 IGTGSYDKAVRLWSITDGASVRVFSD----HVSPVLSIAFSPCGKYLASGGTGSYDKAVR 161
I + S D+ ++LW+ T G S+ H V + FSP + + S+DK V+
Sbjct: 487 IVSASRDRTIKLWN-TLGECKYTISEGGEGHRDWVSCVRFSP-NTLQPTIVSASWDKTVK 544
Query: 162 LWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEH 221
+W++++ + H V ++A SP G ASGG+DG+VL +L G+ + + L+ +
Sbjct: 545 VWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKL--YSLEAN 602
Query: 222 EPVTSLVWS 230
+ +L +S
Sbjct: 603 SVIHALCFS 611
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 75.1 bits (183), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 80/174 (45%), Gaps = 9/174 (5%)
Query: 48 GHDMTVWSVEACSKG-LALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYI 106
GH V V + G A++ S D + RLW+L+ F+GH +DV F P I
Sbjct: 65 GHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQI 124
Query: 107 GTGSYDKAVRLWSITDGASVRVFSD--HVSPVLSIAFSPC--GKYLASGGTGSYDKAVRL 162
+G D A+R+W++ G + S H V + FSP + SGG +D V++
Sbjct: 125 VSGGRDNALRVWNVK-GECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGG---WDNLVKV 180
Query: 163 WSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRF 216
W + G V H + V S+ SP G AS +DG+ +LT G +S
Sbjct: 181 WDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEM 234
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 63/226 (27%), Positives = 98/226 (43%), Gaps = 19/226 (8%)
Query: 36 NLQSRYLPYYTSGHDMTVWSVEACSKGLAL-TGSRDTTARLWSL--EQMYPLRIFVGHKQ 92
NLQ+ Y GH V SV + +G RD R+W++ E M+ L H
Sbjct: 95 NLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNVKGECMHTLSRGA-HTD 153
Query: 93 DVTCARFHPKIT--YIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLAS 150
V+C RF P + I +G +D V++W + G V H + V S+ SP G AS
Sbjct: 154 WVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCAS 213
Query: 151 GGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTG 210
D RLW +T G ++ + +P+ I FSP ++ + E G+ + +L
Sbjct: 214 S---DKDGVARLWDLTKGEALSEMAAG-APINQICFSPNRYWMCAATEKGIRI-FDLENK 268
Query: 211 RVISRFHLQEHE-------PVTSLVWSVTGETLVTGSLTGTVQFYG 249
+I EH+ S+ WS G TL +G ++ +G
Sbjct: 269 DIIVEL-APEHQGSKKIVPECVSIAWSADGSTLYSGYTDNVIRVWG 313
Score = 68.2 bits (165), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 60/195 (30%), Positives = 88/195 (45%), Gaps = 20/195 (10%)
Query: 68 SRDTTARLW-------SLEQMY--PLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLW 118
SRD T W S E Y P R GH V+ + + S+D ++RLW
Sbjct: 35 SRDKTLLSWGPNPDRHSSECSYGLPDRRLEGHSAFVSDVALSNNGNFAVSASWDHSLRLW 94
Query: 119 SITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSD-- 176
++ +G F H VLS+AFSP + + SGG D A+R+W++ G + S
Sbjct: 95 NLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGG---RDNALRVWNVK-GECMHTLSRGA 150
Query: 177 HVSPVLSIAFSPC--GKYLASGGEDGLVLTHELTTGRVISRFHLQEHEP-VTSLVWSVTG 233
H V + FSP + SGG D LV +L TGR+++ L+ H VTS+ S G
Sbjct: 151 HTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVT--DLKGHTNYVTSVTVSPDG 208
Query: 234 ETLVTGSLTGTVQFY 248
+ G + +
Sbjct: 209 SLCASSDKDGVARLW 223
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 92/201 (45%), Gaps = 13/201 (6%)
Query: 48 GHDMTVWSVEACSKGLALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIG 107
GH VWS + + ++GS D T ++W+ E + GH V C H K +
Sbjct: 157 GHTGGVWSSQM-RDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEK--RVV 213
Query: 108 TGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITD 167
+GS D +R+W I G + V HV+ V + + G+ + S G+YD V++W
Sbjct: 214 SGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYD--GRRVVS---GAYDFMVKVWDPET 268
Query: 168 GASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSL 227
+ H + V S+ F G ++ SG D + ++ TG I L H+ +TS
Sbjct: 269 ETCLHTLQGHTNRVYSLQFD--GIHVVSGSLDTSIRVWDVETGNCIHT--LTGHQSLTSG 324
Query: 228 VWSVTGETLVTGSLTGTVQFY 248
+ + LV+G+ TV+ +
Sbjct: 325 M-ELKDNILVSGNADSTVKIW 344
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 90/203 (44%), Gaps = 14/203 (6%)
Query: 48 GHDMTVWSVEACSKGLALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIG 107
GH TV + K + ++GSRD T R+W +E L + +GH V C ++ + +
Sbjct: 197 GHTSTVRCMHLHEKRV-VSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGR--RVV 253
Query: 108 TGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITD 167
+G+YD V++W + H + V S+ F G ++ S GS D ++R+W +
Sbjct: 254 SGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFD--GIHVVS---GSLDTSIRVWDVET 308
Query: 168 GASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFH--LQEHEPVT 225
G + + H S L+ L SG D V ++ TG+ + + VT
Sbjct: 309 GNCIHTLTGHQS--LTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVT 366
Query: 226 SLVWSVTGETLVTGSLTGTVQFY 248
L ++T S GTV+ +
Sbjct: 367 CL--QFNKNFVITSSDDGTVKLW 387
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 57/208 (27%), Positives = 93/208 (44%), Gaps = 16/208 (7%)
Query: 43 PYYTSGHDMTVWSVEACSKGLALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPK 102
P GHD V + ++GS D T ++WS LR VGH V ++
Sbjct: 111 PKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN 170
Query: 103 ITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRL 162
I I +GS D+ +++W+ G + H S V + K + S GS D +R+
Sbjct: 171 I--IISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHE--KRVVS---GSRDATLRV 223
Query: 163 WSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHE 222
W I G + V HV+ V + + G+ + SG D +V + T + LQ H
Sbjct: 224 WDIETGQCLHVLMGHVAAVRCVQYD--GRRVVSGAYDFMVKVWDPETETCLHT--LQGH- 278
Query: 223 PVTSLVWSVT--GETLVTGSLTGTVQFY 248
T+ V+S+ G +V+GSL +++ +
Sbjct: 279 --TNRVYSLQFDGIHVVSGSLDTSIRVW 304
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 72.4 bits (176), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 57/169 (33%), Positives = 78/169 (46%), Gaps = 9/169 (5%)
Query: 48 GHDMTVWSVEACSKG-LALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYI 106
GH V V S G AL+GS D T RLW L R FVGH +DV F I
Sbjct: 84 GHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQI 143
Query: 107 GTGSYDKAVRLWSITDGASVRVFSD--HVSPVLSIAFSP--CGKYLASGGTGSYDKAVRL 162
+GS DK ++LW+ T G D H V + FSP + S G +DK V++
Sbjct: 144 VSGSRDKTIKLWN-TLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCG---WDKLVKV 199
Query: 163 WSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGR 211
W++ + H + ++ SP G ASGG+DG + +L G+
Sbjct: 200 WNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGK 248
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 46/101 (45%), Gaps = 6/101 (5%)
Query: 153 TGSYDKAVRLWSITD-----GASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHEL 207
+ S DK + +W +T G R H V + S G++ SG DG + +L
Sbjct: 56 SASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDL 115
Query: 208 TTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFY 248
TTG RF + + V S+ +S +V+GS T++ +
Sbjct: 116 TTGTTTRRF-VGHTKDVLSVAFSSDNRQIVSGSRDKTIKLW 155
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 72.0 bits (175), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 57/169 (33%), Positives = 78/169 (46%), Gaps = 9/169 (5%)
Query: 48 GHDMTVWSVEACSKG-LALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYI 106
GH V V S G AL+GS D T RLW L R FVGH +DV F I
Sbjct: 61 GHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQI 120
Query: 107 GTGSYDKAVRLWSITDGASVRVFSD--HVSPVLSIAFSP--CGKYLASGGTGSYDKAVRL 162
+GS DK ++LW+ T G D H V + FSP + S G +DK V++
Sbjct: 121 VSGSRDKTIKLWN-TLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCG---WDKLVKV 176
Query: 163 WSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGR 211
W++ + H + ++ SP G ASGG+DG + +L G+
Sbjct: 177 WNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGK 225
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 46/101 (45%), Gaps = 6/101 (5%)
Query: 153 TGSYDKAVRLWSITD-----GASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHEL 207
+ S DK + +W +T G R H V + S G++ SG DG + +L
Sbjct: 33 SASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDL 92
Query: 208 TTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFY 248
TTG RF + + V S+ +S +V+GS T++ +
Sbjct: 93 TTGTTTRRF-VGHTKDVLSVAFSSDNRQIVSGSRDKTIKLW 132
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 71.6 bits (174), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 82/164 (50%), Gaps = 11/164 (6%)
Query: 99 FHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDK 158
F P ++ TG+ D+ +R+W I + V + H + S+ + P G L SG S D+
Sbjct: 131 FSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSG---SGDR 187
Query: 159 AVRLWSITDGASVRVFSDHVSPVLSIAFSPC-GKYLASGGEDGLVLTHELTTGRVISRFH 217
VR+W + G S V ++A SP GKY+A+G D V + TG ++ R
Sbjct: 188 TVRIWDLRTGQCSLTLSIE-DGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLD 246
Query: 218 LQEH------EPVTSLVWSVTGETLVTGSLTGTVQFYGWPSASK 255
+ + V S+V++ G+++V+GSL +V+ + +A+
Sbjct: 247 SENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANN 290
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 88/184 (47%), Gaps = 18/184 (9%)
Query: 25 EDVLANLESQKNLQSRYLPYYTSGHDMTVWSVEACSKGLAL-TGSRDTTARLWSLEQMYP 83
+D AN + + NL + P D+ + SV G L TG+ D R+W +E
Sbjct: 103 DDSAANKDPE-NLNTSSSP----SSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKI 157
Query: 84 LRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSP 143
+ I GH+QD+ + P + +GS D+ VR+W + G S V ++A SP
Sbjct: 158 VMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIE-DGVTTVAVSP 216
Query: 144 C-GKYLASGGTGSYDKAVRLWSITDGASV-RVFSD------HVSPVLSIAFSPCGKYLAS 195
GKY+A+ GS D+AVR+W G V R+ S+ H V S+ F+ G+ + S
Sbjct: 217 GDGKYIAA---GSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVS 273
Query: 196 GGED 199
G D
Sbjct: 274 GSLD 277
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 82/180 (45%), Gaps = 25/180 (13%)
Query: 88 VGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHV-------------S 134
+ H V C +F Y+ TG +K +++ ++DG+ V SD S
Sbjct: 61 LDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSS 119
Query: 135 P-----VLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPC 189
P + S+ FSP GK+LA TG+ D+ +R+W I + V + H + S+ + P
Sbjct: 120 PSSDLYIRSVCFSPDGKFLA---TGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPS 176
Query: 190 GKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSV-TGETLVTGSLTGTVQFY 248
G L SG D V +L TG+ L + VT++ S G+ + GSL V+ +
Sbjct: 177 GDKLVSGSGDRTVRIWDLRTGQC--SLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVW 234
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 60/222 (27%), Positives = 100/222 (45%), Gaps = 27/222 (12%)
Query: 36 NLQSRYLPYYTSGHDMTVWSVEACSKGLAL-TGSRDTTARLWSLEQMYPLRIFVGHKQDV 94
++++R + GH+ ++S++ G L +GS D T R+W L + + + + V
Sbjct: 151 DIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDL-RTGQCSLTLSIEDGV 209
Query: 95 TCARFHP-KITYIGTGSYDKAVRLWSITDGASV-RVFSD------HVSPVLSIAFSPCGK 146
T P YI GS D+AVR+W G V R+ S+ H V S+ F+ G+
Sbjct: 210 TTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQ 269
Query: 147 YLASGGTGSYDKAVRLWSITD------------GASVRVFSDHVSPVLSIAFSPCGKYLA 194
+ S GS D++V+LW++ + G + H VLS+A + +Y+
Sbjct: 270 SVVS---GSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYIL 326
Query: 195 SGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETL 236
SG +D VL + +G + LQ H V G +L
Sbjct: 327 SGSKDRGVLFWDKKSGNPL--LMLQGHRNSVISVAVANGSSL 366
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 56/133 (42%), Gaps = 16/133 (12%)
Query: 47 SGHDMTVWSVEACSKGLAL-TGSRDTTARLWSLEQMYPLR------------IFVGHKQD 93
+GH +V+SV G ++ +GS D + +LW+L+ ++GHK
Sbjct: 253 TGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDF 312
Query: 94 VTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAF---SPCGKYLAS 150
V YI +GS D+ V W G + + H + V+S+A S G
Sbjct: 313 VLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNV 372
Query: 151 GGTGSYDKAVRLW 163
TGS D R+W
Sbjct: 373 FATGSGDCKARIW 385
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 84/186 (45%), Gaps = 4/186 (2%)
Query: 64 ALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDG 123
AL+ S D T RLW + + FVGHK DV K + I +GS DK +++W+I
Sbjct: 80 ALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQ 139
Query: 124 --ASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPV 181
A++ +D VS V + + + DK V+ W++ F H S +
Sbjct: 140 CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNI 199
Query: 182 LSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSL 241
++ SP G +AS G+DG ++ L + + + L + V SL +S L +
Sbjct: 200 NTLTASPDGTLIASAGKDGEIMLWNLAAKKAM--YTLSAQDEVFSLAFSPNRYWLAAATA 257
Query: 242 TGTVQF 247
TG F
Sbjct: 258 TGIKVF 263
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 59/215 (27%), Positives = 96/215 (44%), Gaps = 20/215 (9%)
Query: 48 GHDMTVWSVEACSKG-LALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPK---- 102
GH V SV+ K + ++GSRD T ++W+++ L +GH V+ R P
Sbjct: 105 GHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQC-LATLLGHNDWVSQVRVVPNEKAD 163
Query: 103 ---ITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKA 159
+T I G+ DK V+ W++ F H S + ++ SP G +AS G D
Sbjct: 164 DDSVTIISAGN-DKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGK---DGE 219
Query: 160 VRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGL---VLTHELTTGRVISRF 216
+ LW++ ++ S V S+AFSP +LA+ G+ L + + F
Sbjct: 220 IMLWNLAAKKAMYTLSAQ-DEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEF 278
Query: 217 --HLQEHEP-VTSLVWSVTGETLVTGSLTGTVQFY 248
+ + EP SL WS G+TL G ++ +
Sbjct: 279 AGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVW 313
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 84/186 (45%), Gaps = 4/186 (2%)
Query: 64 ALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDG 123
AL+ S D T RLW + + FVGHK DV K + I +GS DK +++W+I
Sbjct: 80 ALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQ 139
Query: 124 --ASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPV 181
A++ +D VS V + + + DK V+ W++ F H S +
Sbjct: 140 CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNI 199
Query: 182 LSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSL 241
++ SP G +AS G+DG ++ L + + + L + V SL +S L +
Sbjct: 200 NTLTASPDGTLIASAGKDGEIMLWNLAAKKAM--YTLSAQDEVFSLAFSPNRYWLAAATA 257
Query: 242 TGTVQF 247
TG F
Sbjct: 258 TGIKVF 263
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 59/215 (27%), Positives = 96/215 (44%), Gaps = 20/215 (9%)
Query: 48 GHDMTVWSVEACSKG-LALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPK---- 102
GH V SV+ K + ++GSRD T ++W+++ L +GH V+ R P
Sbjct: 105 GHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQC-LATLLGHNDWVSQVRVVPNEKAD 163
Query: 103 ---ITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKA 159
+T I G+ DK V+ W++ F H S + ++ SP G +AS G D
Sbjct: 164 DDSVTIISAGN-DKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGK---DGE 219
Query: 160 VRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGL---VLTHELTTGRVISRF 216
+ LW++ ++ S V S+AFSP +LA+ G+ L + + F
Sbjct: 220 IMLWNLAAKKAMYTLSAQ-DEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEF 278
Query: 217 --HLQEHEP-VTSLVWSVTGETLVTGSLTGTVQFY 248
+ + EP SL WS G+TL G ++ +
Sbjct: 279 AGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVW 313
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 84/186 (45%), Gaps = 4/186 (2%)
Query: 64 ALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDG 123
AL+ S D T RLW + + FVGHK DV K + I +GS DK +++W+I
Sbjct: 74 ALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQ 133
Query: 124 --ASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPV 181
A++ +D VS V + + + DK V+ W++ F H S +
Sbjct: 134 CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNI 193
Query: 182 LSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSL 241
++ SP G +AS G+DG ++ L + + + L + V SL +S L +
Sbjct: 194 NTLTASPDGTLIASAGKDGEIMLWNLAAKKAM--YTLSAQDEVFSLAFSPNRYWLAAATA 251
Query: 242 TGTVQF 247
TG F
Sbjct: 252 TGIKVF 257
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 59/215 (27%), Positives = 96/215 (44%), Gaps = 20/215 (9%)
Query: 48 GHDMTVWSVEACSKG-LALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPK---- 102
GH V SV+ K + ++GSRD T ++W+++ L +GH V+ R P
Sbjct: 99 GHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQC-LATLLGHNDWVSQVRVVPNEKAD 157
Query: 103 ---ITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKA 159
+T I G+ DK V+ W++ F H S + ++ SP G +AS G D
Sbjct: 158 DDSVTIISAGN-DKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGK---DGE 213
Query: 160 VRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGL---VLTHELTTGRVISRF 216
+ LW++ ++ S V S+AFSP +LA+ G+ L + + F
Sbjct: 214 IMLWNLAAKKAMYTLSAQ-DEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEF 272
Query: 217 --HLQEHEP-VTSLVWSVTGETLVTGSLTGTVQFY 248
+ + EP SL WS G+TL G ++ +
Sbjct: 273 AGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVW 307
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 84/186 (45%), Gaps = 4/186 (2%)
Query: 64 ALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDG 123
AL+ S D T RLW + + FVGHK DV K + I +GS DK +++W+I
Sbjct: 80 ALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQ 139
Query: 124 --ASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPV 181
A++ +D VS V + + + DK V+ W++ F H S +
Sbjct: 140 CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNI 199
Query: 182 LSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSL 241
++ SP G +AS G+DG ++ L + + + L + V SL +S L +
Sbjct: 200 NTLTASPDGTLIASAGKDGEIMLWNLAAKKAM--YTLSAQDEVFSLAFSPNRYWLAAATA 257
Query: 242 TGTVQF 247
TG F
Sbjct: 258 TGIKVF 263
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 59/215 (27%), Positives = 96/215 (44%), Gaps = 20/215 (9%)
Query: 48 GHDMTVWSVEACSKG-LALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPK---- 102
GH V SV+ K + ++GSRD T ++W+++ L +GH V+ R P
Sbjct: 105 GHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQC-LATLLGHNDWVSQVRVVPNEKAD 163
Query: 103 ---ITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKA 159
+T I G+ DK V+ W++ F H S + ++ SP G +AS G D
Sbjct: 164 DDSVTIISAGN-DKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGK---DGE 219
Query: 160 VRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGL---VLTHELTTGRVISRF 216
+ LW++ ++ S V S+AFSP +LA+ G+ L + + F
Sbjct: 220 IMLWNLAAKKAMYTLSAQ-DEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEF 278
Query: 217 --HLQEHEP-VTSLVWSVTGETLVTGSLTGTVQFY 248
+ + EP SL WS G+TL G ++ +
Sbjct: 279 AGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVW 313
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 84/186 (45%), Gaps = 4/186 (2%)
Query: 64 ALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDG 123
AL+ S D T RLW + + FVGHK DV K + I +GS DK +++W+I
Sbjct: 80 ALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQ 139
Query: 124 --ASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPV 181
A++ +D VS V + + + DK V+ W++ F H S +
Sbjct: 140 CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNI 199
Query: 182 LSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSL 241
++ SP G +AS G+DG ++ L + + + L + V SL +S L +
Sbjct: 200 NTLTASPDGTLIASAGKDGEIMLWNLAAKKAM--YTLSAQDEVFSLAFSPNRYWLAAATA 257
Query: 242 TGTVQF 247
TG F
Sbjct: 258 TGIKVF 263
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/231 (24%), Positives = 100/231 (43%), Gaps = 35/231 (15%)
Query: 47 SGHDMTVWSVEACSKGLALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARF--HPKIT 104
SGHD VW+++ G+ ++GS D T R+W +++ +F GH V C + I
Sbjct: 159 SGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIK 218
Query: 105 YIGTGSYDKAVRLWSITDGAS-----------------------VRVFSDHVSPVLSIAF 141
YI TGS D + +W + +S V V H++ V ++
Sbjct: 219 YIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV-- 276
Query: 142 SPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGL 201
S G + S GSYD + +W + + + S H + S + K S D
Sbjct: 277 SGHGNIVVS---GSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTT 333
Query: 202 VLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPS 252
+ +L G ++ + LQ H + L+ ++ + LV+ + G+++ GW +
Sbjct: 334 IRIWDLENGELM--YTLQGHTALVGLL-RLSDKFLVSAAADGSIR--GWDA 379
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 58/129 (44%), Gaps = 10/129 (7%)
Query: 76 WSLEQMYPLRIFV-GHKQDV-TCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHV 133
W + P R + GH V TC +F Y+ TG+ DK +R++ + + S H
Sbjct: 105 WYNPKFVPQRTTLRGHMTSVITCLQFED--NYVITGADDKMIRVYDSINKKFLLQLSGHD 162
Query: 134 SPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPV--LSIAFSPCGK 191
V ++ ++ G L SG T D+ VR+W I G VF H S V L I K
Sbjct: 163 GGVWALKYAH-GGILVSGST---DRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIK 218
Query: 192 YLASGGEDG 200
Y+ +G D
Sbjct: 219 YIVTGSRDN 227
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 83/188 (44%), Gaps = 8/188 (4%)
Query: 65 LTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKIT--YIGTGSYDKAVRLWSITD 122
LT S D T LW +E L+ F GH DV C P T +G DK +W +
Sbjct: 170 LTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRS 229
Query: 123 GASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDH--VSP 180
G V+ F H S V S+ + P G AS GS D RL+ + V ++S +
Sbjct: 230 GQCVQAFETHESDVNSVRYYPSGDAFAS---GSDDATCRLYDLRADREVAIYSKESIIFG 286
Query: 181 VLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGS 240
S+ FS G+ L +G D + ++ G +S E+ V++L S G +GS
Sbjct: 287 ASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENR-VSTLRVSPDGTAFCSGS 345
Query: 241 LTGTVQFY 248
T++ +
Sbjct: 346 WDHTLRVW 353
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/202 (25%), Positives = 83/202 (41%), Gaps = 8/202 (3%)
Query: 90 HKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPC--GKY 147
H ++ F I T S D LW + G ++ F H + VL + +P G
Sbjct: 153 HTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNT 212
Query: 148 LASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHEL 207
SGG DK +W + G V+ F H S V S+ + P G ASG +D ++L
Sbjct: 213 FVSGGC---DKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDL 269
Query: 208 TTGRVISRFHLQE-HEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSASKIGI--GVYPRC 264
R ++ + + +S+ +S++G L G T+ + S++ I G R
Sbjct: 270 RADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRV 329
Query: 265 AAQPVGFEAATLAANSRVRTLR 286
+ V + + S TLR
Sbjct: 330 STLRVSPDGTAFCSGSWDHTLR 351
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 76/176 (43%), Gaps = 10/176 (5%)
Query: 27 VLANLESQKNLQSRYLPYYTSGHDMTVWSVEACSKGLAL-TGSRDTTARLWSLEQMYPLR 85
L ++ES + LQS ++ G D+ + G +G D A +W + ++
Sbjct: 179 ALWDVESGQLLQS----FHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQ 234
Query: 86 IFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDH--VSPVLSIAFSP 143
F H+ DV R++P +GS D RL+ + V ++S + S+ FS
Sbjct: 235 AFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSL 294
Query: 144 CGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGED 199
G+ L +G D + +W + G+ V + H + V ++ SP G SG D
Sbjct: 295 SGRLLFAGYN---DYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWD 347
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 28/57 (49%)
Query: 63 LALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWS 119
L G D T +W + + + I GH+ V+ R P T +GS+D +R+W+
Sbjct: 298 LLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 68.6 bits (166), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 83/186 (44%), Gaps = 4/186 (2%)
Query: 64 ALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDG 123
AL+ S D T RLW + + FVGHK DV K + I +GS DK +++W+I
Sbjct: 80 ALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTIKVWTIKGQ 139
Query: 124 --ASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPV 181
A++ +D VS V + + + DK V+ W++ F H S +
Sbjct: 140 CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQIEADFIGHNSNI 199
Query: 182 LSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSL 241
++ SP G +AS G+DG + L + + + L + V SL +S L +
Sbjct: 200 NTLTASPDGTLIASAGKDGEIXLWNLAAKK--AXYTLSAQDEVFSLAFSPNRYWLAAATA 257
Query: 242 TGTVQF 247
TG F
Sbjct: 258 TGIKVF 263
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/215 (27%), Positives = 94/215 (43%), Gaps = 20/215 (9%)
Query: 48 GHDMTVWSVEACSKG-LALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPK---- 102
GH V SV+ K ++GSRD T ++W+++ L +GH V+ R P
Sbjct: 105 GHKSDVXSVDIDKKASXIISGSRDKTIKVWTIKGQC-LATLLGHNDWVSQVRVVPNEKAD 163
Query: 103 ---ITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKA 159
+T I G+ DK V+ W++ F H S + ++ SP G +AS G D
Sbjct: 164 DDSVTIISAGN-DKXVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGK---DGE 219
Query: 160 VRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGL---VLTHELTTGRVISRF 216
+ LW++ + S V S+AFSP +LA+ G+ L + + F
Sbjct: 220 IXLWNLAAKKAXYTLSAQ-DEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEF 278
Query: 217 --HLQEHEP-VTSLVWSVTGETLVTGSLTGTVQFY 248
+ + EP SL WS G+TL G ++ +
Sbjct: 279 AGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVW 313
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 68.6 bits (166), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 56/231 (24%), Positives = 98/231 (42%), Gaps = 35/231 (15%)
Query: 47 SGHDMTVWSVEACSKGLALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARF--HPKIT 104
SGHD VW+++ G+ ++GS D T R+W +++ +F GH V C + I
Sbjct: 159 SGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIK 218
Query: 105 YIGTGSYDKAVRLWSITDGAS-----------------------VRVFSDHVSPVLSIAF 141
YI TGS D + +W + +S V V H + V ++
Sbjct: 219 YIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASVRTV-- 276
Query: 142 SPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGL 201
S G + S GSYD + +W + + + S H + S + K S D
Sbjct: 277 SGHGNIVVS---GSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCISASXDTT 333
Query: 202 VLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPS 252
+ +L G + + LQ H + L+ ++ + LV+ + G+++ GW +
Sbjct: 334 IRIWDLENGEL--XYTLQGHTALVGLL-RLSDKFLVSAAADGSIR--GWDA 379
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 58/129 (44%), Gaps = 10/129 (7%)
Query: 76 WSLEQMYPLRIFV-GHKQDV-TCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHV 133
W + P R + GH V TC +F Y+ TG+ DK +R++ + + S H
Sbjct: 105 WYNPKFVPQRTTLRGHXTSVITCLQFED--NYVITGADDKXIRVYDSINKKFLLQLSGHD 162
Query: 134 SPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPV--LSIAFSPCGK 191
V ++ ++ G L SG T D+ VR+W I G VF H S V L I K
Sbjct: 163 GGVWALKYAH-GGILVSGST---DRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIK 218
Query: 192 YLASGGEDG 200
Y+ +G D
Sbjct: 219 YIVTGSRDN 227
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 82/172 (47%), Gaps = 15/172 (8%)
Query: 85 RIFVGHKQDVTCARFHP-KITYIGTGSYDKAVRLWSITDGASVRVF-----SDHVSPVLS 138
R+ GHK + ++ P + T + TGS D+ LW +T G + +F S H + VLS
Sbjct: 151 RVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLS 210
Query: 139 IAFSPCGKYLASGGTGSYDKAVRLWSI-TDGASVRVFSDHVSPVLSIAFSPCGKYLASGG 197
++ + + +GS D VRLW + +VR + H + S+ F P G+ +G
Sbjct: 211 LSINSLNANMFI--SGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGS 268
Query: 198 EDGLVLTHELTTGRVISRFHLQ------EHEPVTSLVWSVTGETLVTGSLTG 243
+DG ++ TG + ++ + E VTS+ +S++G L G G
Sbjct: 269 DDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNG 320
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 61/209 (29%), Positives = 94/209 (44%), Gaps = 20/209 (9%)
Query: 65 LTGSRDTTARLWSLEQMYPLRIF-----VGHKQDVTCARFHP-KITYIGTGSYDKAVRLW 118
+TGS D T LW + + IF GH DV + +GS D VRLW
Sbjct: 174 ITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLW 233
Query: 119 SI-TDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVF--- 174
+ +VR + H + S+ F P G+ GTGS D RL+ + G ++V+
Sbjct: 234 DLRITSRAVRTYHGHEGDINSVKFFPDGQRF---GTGSDDGTCRLFDMRTGHQLQVYNRE 290
Query: 175 ---SDHVSPVL-SIAFSPCGKYLASGGEDGLVLTHE-LTTGRVISRFHLQE-HE-PVTSL 227
+D+ P++ S+AFS G+ L +G +G + L V++ LQ HE ++ L
Sbjct: 291 PDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCL 350
Query: 228 VWSVTGETLVTGSLTGTVQFYGWPSASKI 256
S G L TGS ++ + + KI
Sbjct: 351 GLSSDGSALCTGSWDKNLKIWAFSGHRKI 379
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 63/117 (53%), Gaps = 10/117 (8%)
Query: 45 YTSGH--DMTVWSVEACSKGLALTGSRDTTARLWSLE-QMYPLRIFVGHKQDVTCARFHP 101
+ SGH D+ S+ + + + ++GS DTT RLW L +R + GH+ D+ +F P
Sbjct: 200 FPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFP 259
Query: 102 KITYIGTGSYDKAVRLWSITDGASVRVF------SDHVSPVL-SIAFSPCGKYLASG 151
GTGS D RL+ + G ++V+ +D+ P++ S+AFS G+ L +G
Sbjct: 260 DGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAG 316
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/218 (22%), Positives = 77/218 (35%), Gaps = 55/218 (25%)
Query: 85 RIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPC 144
R GH V + P+ +I + S D + +W+ H V+ AF+P
Sbjct: 60 RTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPN 119
Query: 145 GKYLASGG-----------------------------------------------TGSYD 157
G+ +A GG TGS D
Sbjct: 120 GQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGD 179
Query: 158 KAVRLWSITDGASVRVF-----SDHVSPVLSIAFSPC-GKYLASGGEDGLVLTHEL-TTG 210
+ LW +T G + +F S H + VLS++ + SG D V +L T
Sbjct: 180 QTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITS 239
Query: 211 RVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFY 248
R + +H E + + S+ + G+ TGS GT + +
Sbjct: 240 RAVRTYHGHEGD-INSVKFFPDGQRFGTGSDDGTCRLF 276
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 78/171 (45%), Gaps = 7/171 (4%)
Query: 70 DTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVF 129
D +W L +R F GH +C T + TG D VR W + +G ++
Sbjct: 162 DGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQH 221
Query: 130 SDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPC 189
D S + S+ + P G++LA G S + + + + D + + H S VLS+ F+ C
Sbjct: 222 -DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHV-NKPDKYQLHL---HESCVLSLKFAYC 276
Query: 190 GKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGS 240
GK+ S G+D L+ G I F +E V S SV + +VTGS
Sbjct: 277 GKWFVSTGKDNLLNAWRTPYGASI--FQSKESSSVLSCDISVDDKYIVTGS 325
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 78/165 (47%), Gaps = 19/165 (11%)
Query: 55 SVEACSKGLALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKA 114
S E C A++ S D T RLW L + FVGH+ +V F P I + ++
Sbjct: 85 SQENC---FAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAERE 141
Query: 115 VRLWSIT-----DGASVRVFSDHV-----SPVLSIA--FSPCGKYLASGGTGSYDKAVRL 162
++LW+I A SD V SP++ A P Y AS G +D +++
Sbjct: 142 IKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVG---WDGRLKV 198
Query: 163 WSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHEL 207
W+ T+ F H S V ++ SP GKY+A+GG+D +L ++
Sbjct: 199 WN-TNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDI 242
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 87/195 (44%), Gaps = 26/195 (13%)
Query: 65 LTGSRDTTARLWSL---EQM----YPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRL 117
++GSRD T +W L EQ P + GH V+ + + + S+DK +RL
Sbjct: 43 ISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRL 102
Query: 118 WSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSIT-----DGASVR 172
W + G + + F H S V S+AFSP + + S G ++ ++LW+I A
Sbjct: 103 WDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGA---EREIKLWNILGECKFSSAEKE 159
Query: 173 VFSDHV-----SPVLSIA--FSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEP-V 224
SD V SP++ A P Y AS G DG + ++ R+ + HE V
Sbjct: 160 NHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRL---KVWNTNFQIRYTFKAHESNV 216
Query: 225 TSLVWSVTGETLVTG 239
L S G+ + TG
Sbjct: 217 NHLSISPNGKYIATG 231
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 68/154 (44%), Gaps = 20/154 (12%)
Query: 70 DTTARLWSLEQMYPLR-IFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRV 128
D ++W+ + +R F H+ +V P YI TG DK + +W I + +
Sbjct: 193 DGRLKVWNTN--FQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQR 250
Query: 129 FSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPV------- 181
D S + IAF+P +++A G D+ V+++++ + V + P+
Sbjct: 251 EFDAGSTINQIAFNPKLQWVAVG----TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQK 306
Query: 182 ------LSIAFSPCGKYLASGGEDGLVLTHELTT 209
S+A++ GK L +G DG++ T T
Sbjct: 307 GKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFET 340
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 75/190 (39%), Gaps = 13/190 (6%)
Query: 70 DTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVF 129
D T +++ E L H+ +V C F +YI T S DK V++W G V +
Sbjct: 643 DKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTY 702
Query: 130 SDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPC 189
+H V F+ +L TGS D ++LW + H + V FSP
Sbjct: 703 DEHSEQVNCCHFTNKSNHLLL-ATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPD 761
Query: 190 GKYLASGGEDGLVLTHELTTGRV-----ISRFHLQEHEP-------VTSLVWSVTGETLV 237
+ LAS DG + ++ + + RF L +P V WS G+ ++
Sbjct: 762 DELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKII 821
Query: 238 TGSLTGTVQF 247
+ + F
Sbjct: 822 VAAKNKVLLF 831
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 66/150 (44%), Gaps = 15/150 (10%)
Query: 49 HDMTVWSVEACSKGLALTG-SRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIG 107
H TV S S + S D TA++WS + + PL GH V C+ F +
Sbjct: 1091 HQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLA 1150
Query: 108 TGSYDKAVRLWSITDG------ASVRV---FSDHVSPVLSIAFSPCGKYLASGGTGSYDK 158
TG + +R+W+++DG A + V + H V + FSP K L S G
Sbjct: 1151 TGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAGG----- 1205
Query: 159 AVRLWSITDGASVRVFSDHVSPVLSIAFSP 188
++ W++ G S + F + + + I SP
Sbjct: 1206 YLKWWNVATGDSSQTFYTNGTNLKKIHVSP 1235
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 76/167 (45%), Gaps = 6/167 (3%)
Query: 48 GHDMTVWSVEACSKGLAL-TGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYI 106
GH V ++ + G L + S D+ ++W+ Q H++ V R + + +
Sbjct: 1008 GHKKAVRHIQFTADGKTLISSSEDSVIQVWNW-QTGDYVFLQAHQETVKDFRL-LQDSRL 1065
Query: 107 GTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSIT 166
+ S+D V++W++ G R F+ H VLS A S +S S DK ++WS
Sbjct: 1066 LSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSST---SADKTAKIWSFD 1122
Query: 167 DGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVI 213
+ + H V AFS G LA+G ++G + ++ G+++
Sbjct: 1123 LLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLL 1169
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 64/162 (39%), Gaps = 12/162 (7%)
Query: 45 YTSGHDMTVWSVEACSKGLALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKIT 104
+ H TV L+ S D T ++W++ R F H+ V T
Sbjct: 1046 FLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDAT 1105
Query: 105 YIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWS 164
+ S DK ++WS + + H V AFS G LA TG + +R+W+
Sbjct: 1106 KFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLA---TGDDNGEIRIWN 1162
Query: 165 ITDG------ASVRV---FSDHVSPVLSIAFSPCGKYLASGG 197
++DG A + V + H V + FSP K L S G
Sbjct: 1163 VSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG 1204
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/211 (23%), Positives = 82/211 (38%), Gaps = 45/211 (21%)
Query: 85 RIFVGHKQDVTCARFHP--KITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFS 142
I GH + F P + I Y V LW+I V H+S V + FS
Sbjct: 841 EIHTGHHSTIQYCDFSPYDHLAVIALSQY--CVELWNIDSRLKVADCRGHLSWVHGVMFS 898
Query: 143 PCGKYLASGGTGSYDKAVRLW---SITDGASVR-------VFSDHVSPVLSI-------- 184
P G +S T S D+ +R+W + +++ VF ++ + VL++
Sbjct: 899 PDG---SSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQL 955
Query: 185 -------------------AFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVT 225
SP +Y+A G EDG + EL RV S + + V
Sbjct: 956 IAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSS-GVGHKKAVR 1014
Query: 226 SLVWSVTGETLVTGSLTGTVQFYGWPSASKI 256
+ ++ G+TL++ S +Q + W + +
Sbjct: 1015 HIQFTADGKTLISSSEDSVIQVWNWQTGDYV 1045
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 42/102 (41%), Gaps = 5/102 (4%)
Query: 66 TGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITY--IGTGSYDKAVRLWSITDG 123
T S D ++W + + H + V C F K + + TGS D ++LW +
Sbjct: 681 TCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQK 740
Query: 124 ASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSI 165
H + V FSP + LAS S D +RLW +
Sbjct: 741 ECRNTMFGHTNSVNHCRFSPDDELLAS---CSADGTLRLWDV 779
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 58/250 (23%), Positives = 82/250 (32%), Gaps = 71/250 (28%)
Query: 63 LALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSI-- 120
L TGS D +LW L Q GH V RF P + + S D +RLW +
Sbjct: 722 LLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRS 781
Query: 121 ---------------------------------TDGASVRV--------FSDHVSPVLS- 138
DG + V F H S +L+
Sbjct: 782 ANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAE 841
Query: 139 -----------IAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFS 187
FSP +LA Y V LW+I V H+S V + FS
Sbjct: 842 IHTGHHSTIQYCDFSP-YDHLAVIALSQY--CVELWNIDSRLKVADCRGHLSWVHGVMFS 898
Query: 188 PCGKYLASGGEDGLVLTHELTTGRVISRFHL----------QEHEPVTSLVWSVTGETLV 237
P G + +D + E T +V + QE+E + V ++ G L+
Sbjct: 899 PDGSSFLTASDDQTIRVWE--TKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLI 956
Query: 238 TGSLTGTVQF 247
G TG + +
Sbjct: 957 AGK-TGQIDY 965
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 65/168 (38%), Gaps = 6/168 (3%)
Query: 90 HKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLA 149
H V A F I + DK ++++ G + H VL AFS Y+A
Sbjct: 621 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIA 680
Query: 150 SGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKY--LASGGEDGLVLTHEL 207
T S DK V++W G V + +H V F+ + LA+G D + +L
Sbjct: 681 ---TCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDL 737
Query: 208 TTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSASK 255
+ V +S E L + S GT++ + SA++
Sbjct: 738 NQKECRNTM-FGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANE 784
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 72/170 (42%), Gaps = 13/170 (7%)
Query: 85 RIF---VGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAF 141
R+F VGHK+ V +F + + S D +++W+ G V H V
Sbjct: 1001 RVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYV-FLQAHQETVKDFRL 1059
Query: 142 SPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGL 201
+ L + S+D V++W++ G R F+ H VLS A S +S D
Sbjct: 1060 LQDSRLL----SWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADK- 1114
Query: 202 VLTHELTTGRVISRFH-LQEHE-PVTSLVWSVTGETLVTGSLTGTVQFYG 249
T ++ + ++S H L+ H V +S+ G L TG G ++ +
Sbjct: 1115 --TAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWN 1162
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 75/190 (39%), Gaps = 13/190 (6%)
Query: 70 DTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVF 129
D T +++ E L H+ +V C F +YI T S DK V++W G V +
Sbjct: 636 DKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTY 695
Query: 130 SDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPC 189
+H V F+ +L TGS D ++LW + H + V FSP
Sbjct: 696 DEHSEQVNCCHFTNKSNHLLL-ATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPD 754
Query: 190 GKYLASGGEDGLVLTHELTTGRV-----ISRFHLQEHEP-------VTSLVWSVTGETLV 237
+ LAS DG + ++ + + RF L +P V WS G+ ++
Sbjct: 755 DELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKII 814
Query: 238 TGSLTGTVQF 247
+ + F
Sbjct: 815 VAAKNKVLLF 824
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 66/150 (44%), Gaps = 15/150 (10%)
Query: 49 HDMTVWSVEACSKGLALTG-SRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIG 107
H TV S S + S D TA++WS + + PL GH V C+ F +
Sbjct: 1084 HQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLA 1143
Query: 108 TGSYDKAVRLWSITDG------ASVRV---FSDHVSPVLSIAFSPCGKYLASGGTGSYDK 158
TG + +R+W+++DG A + V + H V + FSP K L S G
Sbjct: 1144 TGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAGG----- 1198
Query: 159 AVRLWSITDGASVRVFSDHVSPVLSIAFSP 188
++ W++ G S + F + + + I SP
Sbjct: 1199 YLKWWNVATGDSSQTFYTNGTNLKKIHVSP 1228
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 76/167 (45%), Gaps = 6/167 (3%)
Query: 48 GHDMTVWSVEACSKGLAL-TGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYI 106
GH V ++ + G L + S D+ ++W+ Q H++ V R + + +
Sbjct: 1001 GHKKAVRHIQFTADGKTLISSSEDSVIQVWNW-QTGDYVFLQAHQETVKDFRL-LQDSRL 1058
Query: 107 GTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSIT 166
+ S+D V++W++ G R F+ H VLS A S +S S DK ++WS
Sbjct: 1059 LSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSST---SADKTAKIWSFD 1115
Query: 167 DGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVI 213
+ + H V AFS G LA+G ++G + ++ G+++
Sbjct: 1116 LLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLL 1162
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 64/162 (39%), Gaps = 12/162 (7%)
Query: 45 YTSGHDMTVWSVEACSKGLALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKIT 104
+ H TV L+ S D T ++W++ R F H+ V T
Sbjct: 1039 FLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDAT 1098
Query: 105 YIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWS 164
+ S DK ++WS + + H V AFS G LA TG + +R+W+
Sbjct: 1099 KFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLA---TGDDNGEIRIWN 1155
Query: 165 ITDG------ASVRV---FSDHVSPVLSIAFSPCGKYLASGG 197
++DG A + V + H V + FSP K L S G
Sbjct: 1156 VSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG 1197
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/211 (23%), Positives = 82/211 (38%), Gaps = 45/211 (21%)
Query: 85 RIFVGHKQDVTCARFHP--KITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFS 142
I GH + F P + I Y V LW+I V H+S V + FS
Sbjct: 834 EIHTGHHSTIQYCDFSPYDHLAVIALSQY--CVELWNIDSRLKVADCRGHLSWVHGVMFS 891
Query: 143 PCGKYLASGGTGSYDKAVRLW---SITDGASVR-------VFSDHVSPVLSI-------- 184
P G +S T S D+ +R+W + +++ VF ++ + VL++
Sbjct: 892 PDG---SSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQL 948
Query: 185 -------------------AFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVT 225
SP +Y+A G EDG + EL RV S + + V
Sbjct: 949 IAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSS-GVGHKKAVR 1007
Query: 226 SLVWSVTGETLVTGSLTGTVQFYGWPSASKI 256
+ ++ G+TL++ S +Q + W + +
Sbjct: 1008 HIQFTADGKTLISSSEDSVIQVWNWQTGDYV 1038
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 42/102 (41%), Gaps = 5/102 (4%)
Query: 66 TGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITY--IGTGSYDKAVRLWSITDG 123
T S D ++W + + H + V C F K + + TGS D ++LW +
Sbjct: 674 TCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQK 733
Query: 124 ASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSI 165
H + V FSP + LAS S D +RLW +
Sbjct: 734 ECRNTMFGHTNSVNHCRFSPDDELLAS---CSADGTLRLWDV 772
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 58/250 (23%), Positives = 82/250 (32%), Gaps = 71/250 (28%)
Query: 63 LALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSI-- 120
L TGS D +LW L Q GH V RF P + + S D +RLW +
Sbjct: 715 LLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRS 774
Query: 121 ---------------------------------TDGASVRV--------FSDHVSPVLS- 138
DG + V F H S +L+
Sbjct: 775 ANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAE 834
Query: 139 -----------IAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFS 187
FSP +LA Y V LW+I V H+S V + FS
Sbjct: 835 IHTGHHSTIQYCDFSP-YDHLAVIALSQY--CVELWNIDSRLKVADCRGHLSWVHGVMFS 891
Query: 188 PCGKYLASGGEDGLVLTHELTTGRVISRFHL----------QEHEPVTSLVWSVTGETLV 237
P G + +D + E T +V + QE+E + V ++ G L+
Sbjct: 892 PDGSSFLTASDDQTIRVWE--TKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLI 949
Query: 238 TGSLTGTVQF 247
G TG + +
Sbjct: 950 AGK-TGQIDY 958
Score = 41.2 bits (95), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 65/168 (38%), Gaps = 6/168 (3%)
Query: 90 HKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLA 149
H V A F I + DK ++++ G + H VL AFS Y+A
Sbjct: 614 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIA 673
Query: 150 SGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKY--LASGGEDGLVLTHEL 207
T S DK V++W G V + +H V F+ + LA+G D + +L
Sbjct: 674 ---TCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDL 730
Query: 208 TTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSASK 255
+ V +S E L + S GT++ + SA++
Sbjct: 731 NQKECRNTM-FGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANE 777
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 72/170 (42%), Gaps = 13/170 (7%)
Query: 85 RIF---VGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAF 141
R+F VGHK+ V +F + + S D +++W+ G V H V
Sbjct: 994 RVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYV-FLQAHQETVKDFRL 1052
Query: 142 SPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGL 201
+ L + S+D V++W++ G R F+ H VLS A S +S D
Sbjct: 1053 LQDSRLL----SWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADK- 1107
Query: 202 VLTHELTTGRVISRFH-LQEHE-PVTSLVWSVTGETLVTGSLTGTVQFYG 249
T ++ + ++S H L+ H V +S+ G L TG G ++ +
Sbjct: 1108 --TAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWN 1155
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 79/178 (44%), Gaps = 9/178 (5%)
Query: 28 LANLESQKNLQSR----YLPYYTSGHDMTVWSVEACSKGLALTGSRDTTARLWSLEQMYP 83
L N+ S NL++R + +GH + +T S DTT LW +E
Sbjct: 117 LDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQ 176
Query: 84 LRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSP 143
F GH DV P +G+ D + +LW + +G + F+ H S + +I F P
Sbjct: 177 TTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFP 236
Query: 144 CGKYLASGGTGSYDKAVRLWSITDGASVRVFS--DHVSPVLSIAFSPCGKYLASGGED 199
G A TGS D RL+ + + +S + + + S++FS G+ L +G +D
Sbjct: 237 NGNAFA---TGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDD 291
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 64/143 (44%), Gaps = 7/143 (4%)
Query: 63 LALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITD 122
L ++G+ D +A+LW + + + F GH+ D+ F P TGS D RL+ +
Sbjct: 198 LFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRA 257
Query: 123 GASVRVFS--DHVSPVLSIAFSPCGKYLASGGTGSYDK-AVRLWSITDGASVRVFSDHVS 179
+ +S + + + S++FS G+ L +G YD +W V + H +
Sbjct: 258 DQELMTYSHDNIICGITSVSFSKSGRLLLAG----YDDFNCNVWDALKADRAGVLAGHDN 313
Query: 180 PVLSIAFSPCGKYLASGGEDGLV 202
V + + G +A+G D +
Sbjct: 314 RVSCLGVTDDGMAVATGSWDSFL 336
Score = 35.4 bits (80), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 41/211 (19%), Positives = 67/211 (31%), Gaps = 43/211 (20%)
Query: 80 QMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSI 139
QM R GH + + + + S D + +W V S V++
Sbjct: 44 QMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTC 103
Query: 140 AFSPCGKYLASGG------------------------------------------TGSYD 157
A++P G Y+A GG T S D
Sbjct: 104 AYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGD 163
Query: 158 KAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFH 217
LW I G F+ H V+S++ +P + SG D ++ G F
Sbjct: 164 TTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFT 223
Query: 218 LQEHEPVTSLVWSVTGETLVTGSLTGTVQFY 248
E + + ++ + G TGS T + +
Sbjct: 224 GHESD-INAICFFPNGNAFATGSDDATCRLF 253
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 24/57 (42%)
Query: 63 LALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWS 119
L L G D +W + + GH V+C + TGS+D +++W+
Sbjct: 284 LLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 79/178 (44%), Gaps = 9/178 (5%)
Query: 28 LANLESQKNLQSR----YLPYYTSGHDMTVWSVEACSKGLALTGSRDTTARLWSLEQMYP 83
L N+ S NL++R + +GH + +T S DTT LW +E
Sbjct: 128 LDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQ 187
Query: 84 LRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSP 143
F GH DV P +G+ D + +LW + +G + F+ H S + +I F P
Sbjct: 188 TTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFP 247
Query: 144 CGKYLASGGTGSYDKAVRLWSITDGASVRVFS--DHVSPVLSIAFSPCGKYLASGGED 199
G A TGS D RL+ + + +S + + + S++FS G+ L +G +D
Sbjct: 248 NGNAFA---TGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDD 302
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 64/143 (44%), Gaps = 7/143 (4%)
Query: 63 LALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITD 122
L ++G+ D +A+LW + + + F GH+ D+ F P TGS D RL+ +
Sbjct: 209 LFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRA 268
Query: 123 GASVRVFS--DHVSPVLSIAFSPCGKYLASGGTGSYDK-AVRLWSITDGASVRVFSDHVS 179
+ +S + + + S++FS G+ L +G YD +W V + H +
Sbjct: 269 DQELMTYSHDNIICGITSVSFSKSGRLLLAG----YDDFNCNVWDALKADRAGVLAGHDN 324
Query: 180 PVLSIAFSPCGKYLASGGEDGLV 202
V + + G +A+G D +
Sbjct: 325 RVSCLGVTDDGMAVATGSWDSFL 347
Score = 35.0 bits (79), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 41/211 (19%), Positives = 67/211 (31%), Gaps = 43/211 (20%)
Query: 80 QMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSI 139
QM R GH + + + + S D + +W V S V++
Sbjct: 55 QMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTC 114
Query: 140 AFSPCGKYLASGG------------------------------------------TGSYD 157
A++P G Y+A GG T S D
Sbjct: 115 AYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGD 174
Query: 158 KAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFH 217
LW I G F+ H V+S++ +P + SG D ++ G F
Sbjct: 175 TTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFT 234
Query: 218 LQEHEPVTSLVWSVTGETLVTGSLTGTVQFY 248
E + + ++ + G TGS T + +
Sbjct: 235 GHESD-INAICFFPNGNAFATGSDDATCRLF 264
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 24/57 (42%)
Query: 63 LALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWS 119
L L G D +W + + GH V+C + TGS+D +++W+
Sbjct: 295 LLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 351
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 79/178 (44%), Gaps = 9/178 (5%)
Query: 28 LANLESQKNLQSR----YLPYYTSGHDMTVWSVEACSKGLALTGSRDTTARLWSLEQMYP 83
L N+ S NL++R + +GH + +T S DTT LW +E
Sbjct: 117 LDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQ 176
Query: 84 LRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSP 143
F GH DV P +G+ D + +LW + +G + F+ H S + +I F P
Sbjct: 177 TTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFP 236
Query: 144 CGKYLASGGTGSYDKAVRLWSITDGASVRVFS--DHVSPVLSIAFSPCGKYLASGGED 199
G A TGS D RL+ + + +S + + + S++FS G+ L +G +D
Sbjct: 237 NGNAFA---TGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDD 291
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 64/143 (44%), Gaps = 7/143 (4%)
Query: 63 LALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITD 122
L ++G+ D +A+LW + + + F GH+ D+ F P TGS D RL+ +
Sbjct: 198 LFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRA 257
Query: 123 GASVRVFS--DHVSPVLSIAFSPCGKYLASGGTGSYDK-AVRLWSITDGASVRVFSDHVS 179
+ +S + + + S++FS G+ L +G YD +W V + H +
Sbjct: 258 DQELMTYSHDNIICGITSVSFSKSGRLLLAG----YDDFNCNVWDALKADRAGVLAGHDN 313
Query: 180 PVLSIAFSPCGKYLASGGEDGLV 202
V + + G +A+G D +
Sbjct: 314 RVSCLGVTDDGMAVATGSWDSFL 336
Score = 35.0 bits (79), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 41/211 (19%), Positives = 67/211 (31%), Gaps = 43/211 (20%)
Query: 80 QMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSI 139
QM R GH + + + + S D + +W V S V++
Sbjct: 44 QMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTC 103
Query: 140 AFSPCGKYLASGG------------------------------------------TGSYD 157
A++P G Y+A GG T S D
Sbjct: 104 AYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGD 163
Query: 158 KAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFH 217
LW I G F+ H V+S++ +P + SG D ++ G F
Sbjct: 164 TTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFT 223
Query: 218 LQEHEPVTSLVWSVTGETLVTGSLTGTVQFY 248
E + + ++ + G TGS T + +
Sbjct: 224 GHESD-INAICFFPNGNAFATGSDDATCRLF 253
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 24/57 (42%)
Query: 63 LALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWS 119
L L G D +W + + GH V+C + TGS+D +++W+
Sbjct: 284 LLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 79/178 (44%), Gaps = 9/178 (5%)
Query: 28 LANLESQKNLQSR----YLPYYTSGHDMTVWSVEACSKGLALTGSRDTTARLWSLEQMYP 83
L N+ S NL++R + +GH + +T S DTT LW +E
Sbjct: 117 LDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQ 176
Query: 84 LRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSP 143
F GH DV P +G+ D + +LW + +G + F+ H S + +I F P
Sbjct: 177 TTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFP 236
Query: 144 CGKYLASGGTGSYDKAVRLWSITDGASVRVFS--DHVSPVLSIAFSPCGKYLASGGED 199
G A TGS D RL+ + + +S + + + S++FS G+ L +G +D
Sbjct: 237 NGNAFA---TGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDD 291
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 64/143 (44%), Gaps = 7/143 (4%)
Query: 63 LALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITD 122
L ++G+ D +A+LW + + + F GH+ D+ F P TGS D RL+ +
Sbjct: 198 LFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRA 257
Query: 123 GASVRVFS--DHVSPVLSIAFSPCGKYLASGGTGSYDK-AVRLWSITDGASVRVFSDHVS 179
+ +S + + + S++FS G+ L +G YD +W V + H +
Sbjct: 258 DQELMTYSHDNIICGITSVSFSKSGRLLLAG----YDDFNCNVWDALKADRAGVLAGHDN 313
Query: 180 PVLSIAFSPCGKYLASGGEDGLV 202
V + + G +A+G D +
Sbjct: 314 RVSCLGVTDDGMAVATGSWDSFL 336
Score = 35.4 bits (80), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 41/211 (19%), Positives = 67/211 (31%), Gaps = 43/211 (20%)
Query: 80 QMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSI 139
QM R GH + + + + S D + +W V S V++
Sbjct: 44 QMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTC 103
Query: 140 AFSPCGKYLASGG------------------------------------------TGSYD 157
A++P G Y+A GG T S D
Sbjct: 104 AYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGD 163
Query: 158 KAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFH 217
LW I G F+ H V+S++ +P + SG D ++ G F
Sbjct: 164 TTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFT 223
Query: 218 LQEHEPVTSLVWSVTGETLVTGSLTGTVQFY 248
E + + ++ + G TGS T + +
Sbjct: 224 GHESD-INAICFFPNGNAFATGSDDATCRLF 253
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 24/57 (42%)
Query: 63 LALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWS 119
L L G D +W + + GH V+C + TGS+D +++W+
Sbjct: 284 LLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 79/178 (44%), Gaps = 9/178 (5%)
Query: 28 LANLESQKNLQSR----YLPYYTSGHDMTVWSVEACSKGLALTGSRDTTARLWSLEQMYP 83
L N+ S NL++R + +GH + +T S DTT LW +E
Sbjct: 117 LDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQ 176
Query: 84 LRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSP 143
F GH DV P +G+ D + +LW + +G + F+ H S + +I F P
Sbjct: 177 TTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFP 236
Query: 144 CGKYLASGGTGSYDKAVRLWSITDGASVRVFS--DHVSPVLSIAFSPCGKYLASGGED 199
G A TGS D RL+ + + +S + + + S++FS G+ L +G +D
Sbjct: 237 NGNAFA---TGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDD 291
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 64/143 (44%), Gaps = 7/143 (4%)
Query: 63 LALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITD 122
L ++G+ D +A+LW + + + F GH+ D+ F P TGS D RL+ +
Sbjct: 198 LFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRA 257
Query: 123 GASVRVFS--DHVSPVLSIAFSPCGKYLASGGTGSYDK-AVRLWSITDGASVRVFSDHVS 179
+ +S + + + S++FS G+ L +G YD +W V + H +
Sbjct: 258 DQELMTYSHDNIICGITSVSFSKSGRLLLAG----YDDFNCNVWDALKADRAGVLAGHDN 313
Query: 180 PVLSIAFSPCGKYLASGGEDGLV 202
V + + G +A+G D +
Sbjct: 314 RVSCLGVTDDGMAVATGSWDSFL 336
Score = 35.0 bits (79), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 41/211 (19%), Positives = 67/211 (31%), Gaps = 43/211 (20%)
Query: 80 QMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSI 139
QM R GH + + + + S D + +W V S V++
Sbjct: 44 QMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTC 103
Query: 140 AFSPCGKYLASGG------------------------------------------TGSYD 157
A++P G Y+A GG T S D
Sbjct: 104 AYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGD 163
Query: 158 KAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFH 217
LW I G F+ H V+S++ +P + SG D ++ G F
Sbjct: 164 TTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFT 223
Query: 218 LQEHEPVTSLVWSVTGETLVTGSLTGTVQFY 248
E + + ++ + G TGS T + +
Sbjct: 224 GHESD-INAICFFPNGNAFATGSDDATCRLF 253
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 24/57 (42%)
Query: 63 LALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWS 119
L L G D +W + + GH V+C + TGS+D +++W+
Sbjct: 284 LLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 73/190 (38%), Gaps = 13/190 (6%)
Query: 70 DTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVF 129
D T +++ E L H+ +V C F +I T S DK V++W+ G V +
Sbjct: 642 DKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRFIATCSVDKKVKIWNSMTGELVHTY 701
Query: 130 SDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPC 189
+H V F+ +L TGS D ++LW + H + V FSP
Sbjct: 702 DEHSEQVNCCHFTNSSHHLLL-ATGSSDCFLKLWDLNQKECRNTMFGHTNSVNHCRFSPD 760
Query: 190 GKYLASGGEDGLVLTHELTTGRV-----ISRFHLQEHEP-------VTSLVWSVTGETLV 237
K LAS DG + + T+ + +F L +P V WS G ++
Sbjct: 761 DKLLASCSADGTLKLWDATSANERKSINVKQFFLNLEDPQEDMEVIVKCCSWSADGARIM 820
Query: 238 TGSLTGTVQF 247
+ F
Sbjct: 821 VAAKNKIFLF 830
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 61/129 (47%), Gaps = 13/129 (10%)
Query: 68 SRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVR 127
S D TA++WS + + PL GH V C+ F T + TG + +R+W++++G +
Sbjct: 1110 SADKTAKIWSFDLLLPLHELRGHNGCVRCSAFSVDSTLLATGDDNGEIRIWNVSNGELLH 1169
Query: 128 VF--------SDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVS 179
+ + H V + FSP GK L S G ++ W++ G S + F + +
Sbjct: 1170 LCAPLSEEGAATHGGWVTDLCFSPDGKMLISAGG-----YIKWWNVVTGESSQTFYTNGT 1224
Query: 180 PVLSIAFSP 188
+ I SP
Sbjct: 1225 NLKKIHVSP 1233
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 64/161 (39%), Gaps = 11/161 (6%)
Query: 45 YTSGHDMTVWSVEACSKGLALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKIT 104
+ GH TV L+ S D T ++W++ + FV H+ V T
Sbjct: 1045 FLRGHQETVKDFRLLKNSRLLSWSFDGTVKVWNIITGNKEKDFVCHQGTVLSCDISHDAT 1104
Query: 105 YIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWS 164
+ S DK ++WS + H V AFS LA TG + +R+W+
Sbjct: 1105 KFSSTSADKTAKIWSFDLLLPLHELRGHNGCVRCSAFSVDSTLLA---TGDDNGEIRIWN 1161
Query: 165 ITDGASVRVF--------SDHVSPVLSIAFSPCGKYLASGG 197
+++G + + + H V + FSP GK L S G
Sbjct: 1162 VSNGELLHLCAPLSEEGAATHGGWVTDLCFSPDGKMLISAG 1202
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 67/168 (39%), Gaps = 6/168 (3%)
Query: 90 HKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLA 149
H V A F I + DK ++++ G + H VL AFS +++A
Sbjct: 620 HTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRFIA 679
Query: 150 SGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKY--LASGGEDGLVLTHEL 207
T S DK V++W+ G V + +H V F+ + LA+G D + +L
Sbjct: 680 ---TCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDL 736
Query: 208 TTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSASK 255
+ V +S + L + S GT++ + SA++
Sbjct: 737 NQKECRNTM-FGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSANE 783
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/195 (23%), Positives = 61/195 (31%), Gaps = 58/195 (29%)
Query: 63 LALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSIT- 121
L TGS D +LW L Q GH V RF P + + S D ++LW T
Sbjct: 721 LLATGSSDCFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATS 780
Query: 122 ----------------------------------DGASVRV--------FSDHVSPVLS- 138
DGA + V F H S +L
Sbjct: 781 ANERKSINVKQFFLNLEDPQEDMEVIVKCCSWSADGARIMVAAKNKIFLFDIHTSGLLGE 840
Query: 139 -----------IAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFS 187
FSP +LA Y V LW+ + V H+S V + FS
Sbjct: 841 IHTGHHSTIQYCDFSP-QNHLAVVALSQY--CVELWNTDSRSKVADCRGHLSWVHGVMFS 897
Query: 188 PCGKYLASGGEDGLV 202
P G + +D +
Sbjct: 898 PDGSSFLTSSDDQTI 912
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/216 (22%), Positives = 83/216 (38%), Gaps = 32/216 (14%)
Query: 47 SGHDMTVWSVEACSKG-LALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITY 105
+GH T+ + + LA+ LW+ + + GH V F P +
Sbjct: 843 TGHHSTIQYCDFSPQNHLAVVALSQYCVELWNTDSRSKVADCRGHLSWVHGVMFSPDGSS 902
Query: 106 IGTGSYDKAVRLW---SITDGASVR-------VFSDHVSPVLSIAFSPCGKYLASGGTGS 155
T S D+ +RLW + ++V VF ++ VL++ L +G TG
Sbjct: 903 FLTSSDDQTIRLWETKKVCKNSAVMLKQEVDVVFQENEVMVLAVDHIR-RLQLINGRTGQ 961
Query: 156 YDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVI-S 214
D + V SP +Y+A G E+G + EL R+ S
Sbjct: 962 IDYLTE-----------------AQVSCCCLSPHLQYIAFGDENGAIEILELVNNRIFQS 1004
Query: 215 RFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGW 250
RF Q + V + ++ +TL++ S +Q + W
Sbjct: 1005 RF--QHKKTVWHIQFTADEKTLISSSDDAEIQVWNW 1038
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 70/154 (45%), Gaps = 12/154 (7%)
Query: 60 SKGLALTGSRDTTARLWSLEQMYPL---RIFVGHKQDVTCARFHPKITYIGTGSYDKAVR 116
+ G+ +T S+D + +W + + R+ VGH+ V F K YI + S D+ ++
Sbjct: 222 NNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDK--YIVSASGDRTIK 279
Query: 117 LWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSD 176
+W+ + VR + H + + + + + SG S D +RLW I GA +RV
Sbjct: 280 VWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSG---SSDNTIRLWDIECGACLRVLEG 334
Query: 177 HVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTG 210
H V I F K + SG DG + +L
Sbjct: 335 HEELVRCIRFD--NKRIVSGAYDGKIKVWDLVAA 366
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 63/138 (45%), Gaps = 12/138 (8%)
Query: 65 LTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGA 124
++G RD T ++W + RI GH V C ++ ++ I TGS D VR+W + G
Sbjct: 147 VSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERV--IITGSSDSTVRVWDVNTGE 204
Query: 125 SVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSI---TDGASVRVFSDHVSPV 181
+ H VL + F+ G + T S D+++ +W + TD RV H + V
Sbjct: 205 MLNTLIHHCEAVLHLRFNN-GMMV----TCSKDRSIAVWDMASPTDITLRRVLVGHRAAV 259
Query: 182 LSIAFSPCGKYLASGGED 199
+ F KY+ S D
Sbjct: 260 NVVDFD--DKYIVSASGD 275
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 72/160 (45%), Gaps = 12/160 (7%)
Query: 60 SKGLALTGSRDTTARLWSLEQMYPL-RIFVGHKQDVTCARFHPKI-TYIGTGSYDKAVRL 117
+K L+GS D T +LW+ E + L + F GH+ V C F+PK + +G D+ V++
Sbjct: 108 TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKV 167
Query: 118 WSITDGASVRVFSDHVSPVLSIAFS-----PCGKYLASGGTGSYDKAVRLWSITDGASVR 172
WS+ G S F+ + + P Y+ T S D +++W + V
Sbjct: 168 WSL--GQSTPNFTLTTGQERGVNYVDYYPLPDKPYMI---TASDDLTIKIWDYQTKSCVA 222
Query: 173 VFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRV 212
H+S V F P + SG EDG + +T +V
Sbjct: 223 TLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKV 262
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/196 (22%), Positives = 87/196 (44%), Gaps = 13/196 (6%)
Query: 61 KGLALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSI 120
K + GS D R+++ + F H + HP Y+ +GS D V+LW+
Sbjct: 67 KNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNW 126
Query: 121 TDGASV-RVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVS 179
+ ++ + F H V+ +AF+P K ++ +G D+ V++WS+ G S F+
Sbjct: 127 ENNWALEQTFEGHEHFVMCVAFNP--KDPSTFASGCLDRTVKVWSL--GQSTPNFTLTTG 182
Query: 180 PVLSIAFS-----PCGKYLASGGEDGLVLTHELTTGRVISRFHLQEH-EPVTSLVWSVTG 233
+ + P Y+ + +D + + T ++ L+ H V+ V+ T
Sbjct: 183 QERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVAT--LEGHMSNVSFAVFHPTL 240
Query: 234 ETLVTGSLTGTVQFYG 249
+++GS GT++ +
Sbjct: 241 PIIISGSEDGTLKIWN 256
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 45/93 (48%), Gaps = 2/93 (2%)
Query: 61 KGLALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSI 120
K +T S D T ++W + + GH +V+ A FHP + I +GS D +++W+
Sbjct: 198 KPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNS 257
Query: 121 TDGASVRVFSDHVSPVLSIAFSPCGK--YLASG 151
+ + + + IA P G+ Y+ASG
Sbjct: 258 STYKVEKTLNVGLERSWCIATHPTGRKNYIASG 290
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 48/118 (40%), Gaps = 9/118 (7%)
Query: 85 RIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPC 144
+ F V FHP ++ T Y V LW+ VR +PV +
Sbjct: 7 KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRA------ 60
Query: 145 GKYLASGG---TGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGED 199
GK++A GS D +R+++ G V F H + SIA P Y+ SG +D
Sbjct: 61 GKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDD 118
Score = 31.2 bits (69), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 28/124 (22%), Positives = 48/124 (38%), Gaps = 4/124 (3%)
Query: 127 RVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAF 186
+ FS+ V I F P ++ T Y V LW+ VR +PV + F
Sbjct: 7 KTFSNRSDRVKGIDFHPTEPWVL---TTLYSGRVELWNYETQVEVRSIQVTETPVRAGKF 63
Query: 187 SPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQ 246
++ G +D + TG + F + + S+ T +++GS TV+
Sbjct: 64 IARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHP-DYIRSIAVHPTKPYVLSGSDDLTVK 122
Query: 247 FYGW 250
+ W
Sbjct: 123 LWNW 126
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 72/160 (45%), Gaps = 12/160 (7%)
Query: 60 SKGLALTGSRDTTARLWSLEQMYPL-RIFVGHKQDVTCARFHPKI-TYIGTGSYDKAVRL 117
+K L+GS D T +LW+ E + L + F GH+ V C F+PK + +G D+ V++
Sbjct: 108 TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKV 167
Query: 118 WSITDGASVRVFSDHVSPVLSIAFS-----PCGKYLASGGTGSYDKAVRLWSITDGASVR 172
WS+ G S F+ + + P Y+ T S D +++W + V
Sbjct: 168 WSL--GQSTPNFTLTTGQERGVNYVDYYPLPDKPYMI---TASDDLTIKIWDYQTKSCVA 222
Query: 173 VFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRV 212
H+S V F P + SG EDG + +T +V
Sbjct: 223 TLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKV 262
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/196 (22%), Positives = 87/196 (44%), Gaps = 13/196 (6%)
Query: 61 KGLALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSI 120
K + GS D R+++ + F H + HP Y+ +GS D V+LW+
Sbjct: 67 KNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNW 126
Query: 121 TDGASV-RVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVS 179
+ ++ + F H V+ +AF+P K ++ +G D+ V++WS+ G S F+
Sbjct: 127 ENNWALEQTFEGHEHFVMCVAFNP--KDPSTFASGCLDRTVKVWSL--GQSTPNFTLTTG 182
Query: 180 PVLSIAFS-----PCGKYLASGGEDGLVLTHELTTGRVISRFHLQEH-EPVTSLVWSVTG 233
+ + P Y+ + +D + + T ++ L+ H V+ V+ T
Sbjct: 183 QERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVAT--LEGHMSNVSFAVFHPTL 240
Query: 234 ETLVTGSLTGTVQFYG 249
+++GS GT++ +
Sbjct: 241 PIIISGSEDGTLKIWN 256
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 45/93 (48%), Gaps = 2/93 (2%)
Query: 61 KGLALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSI 120
K +T S D T ++W + + GH +V+ A FHP + I +GS D +++W+
Sbjct: 198 KPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNS 257
Query: 121 TDGASVRVFSDHVSPVLSIAFSPCGK--YLASG 151
+ + + + IA P G+ Y+ASG
Sbjct: 258 STYKVEKTLNVGLERSWCIATHPTGRKNYIASG 290
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 48/118 (40%), Gaps = 9/118 (7%)
Query: 85 RIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPC 144
+ F V FHP ++ T Y V LW+ VR +PV +
Sbjct: 7 KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRA------ 60
Query: 145 GKYLASGG---TGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGED 199
GK++A GS D +R+++ G V F H + SIA P Y+ SG +D
Sbjct: 61 GKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDD 118
Score = 31.2 bits (69), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 28/124 (22%), Positives = 48/124 (38%), Gaps = 4/124 (3%)
Query: 127 RVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAF 186
+ FS+ V I F P ++ T Y V LW+ VR +PV + F
Sbjct: 7 KTFSNRSDRVKGIDFHPTEPWVL---TTLYSGRVELWNYETQVEVRSIQVTETPVRAGKF 63
Query: 187 SPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQ 246
++ G +D + TG + F + + S+ T +++GS TV+
Sbjct: 64 IARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHP-DYIRSIAVHPTKPYVLSGSDDLTVK 122
Query: 247 FYGW 250
+ W
Sbjct: 123 LWNW 126
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 72/160 (45%), Gaps = 12/160 (7%)
Query: 60 SKGLALTGSRDTTARLWSLEQMYPL-RIFVGHKQDVTCARFHPKI-TYIGTGSYDKAVRL 117
+K L+GS D T +LW+ E + L + F GH+ V C F+PK + +G D+ V++
Sbjct: 108 TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKV 167
Query: 118 WSITDGASVRVFSDHVSPVLSIAFS-----PCGKYLASGGTGSYDKAVRLWSITDGASVR 172
WS+ G S F+ + + P Y+ T S D +++W + V
Sbjct: 168 WSL--GQSTPNFTLTTGQERGVNYVDYYPLPDKPYMI---TASDDLTIKIWDYQTKSCVA 222
Query: 173 VFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRV 212
H+S V F P + SG EDG + +T +V
Sbjct: 223 TLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKV 262
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 75/167 (44%), Gaps = 20/167 (11%)
Query: 61 KGLALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSI 120
K +T S D T ++W + + GH +V+ A FHP + I +GS D +++W+
Sbjct: 198 KPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNS 257
Query: 121 TDGASVRVFSDHVSPVLSIAFSPCGK--YLASGGTGSYDKAVRLWSITDGASVRVFSDHV 178
+ + + + IA P G+ Y+ASG +D + S+ +
Sbjct: 258 STYKVEKTLNVGLERSWCIATHPTGRKNYIASG----FDNGFTVLSLGND---------- 303
Query: 179 SPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVT 225
P LS+ P GK + SGG++ ++ T + +++ EP++
Sbjct: 304 EPTLSL--DPVGKLVWSGGKNAAA--SDIFTAVIRGNEEVEQDEPLS 346
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 52/106 (49%), Gaps = 3/106 (2%)
Query: 61 KGLALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSI 120
K + GS D R+++ + F H + HP Y+ +GS D V+LW+
Sbjct: 67 KNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNW 126
Query: 121 TDGASV-RVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSI 165
+ ++ + F H V+ +AF+P K ++ +G D+ V++WS+
Sbjct: 127 ENNWALEQTFEGHEHFVMCVAFNP--KDPSTFASGCLDRTVKVWSL 170
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 48/118 (40%), Gaps = 9/118 (7%)
Query: 85 RIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPC 144
+ F V FHP ++ T Y V LW+ VR +PV +
Sbjct: 7 KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRA------ 60
Query: 145 GKYLASGG---TGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGED 199
GK++A GS D +R+++ G V F H + SIA P Y+ SG +D
Sbjct: 61 GKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDD 118
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/126 (22%), Positives = 49/126 (38%), Gaps = 4/126 (3%)
Query: 127 RVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAF 186
+ FS+ V I F P ++ T Y V LW+ VR +PV + F
Sbjct: 7 KTFSNRSDRVKGIDFHPTEPWVL---TTLYSGRVELWNYETQVEVRSIQVTETPVRAGKF 63
Query: 187 SPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQ 246
++ G +D + TG + F + + S+ T +++GS TV+
Sbjct: 64 IARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHP-DYIRSIAVHPTKPYVLSGSDDLTVK 122
Query: 247 FYGWPS 252
+ W +
Sbjct: 123 LWNWEN 128
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 72/160 (45%), Gaps = 12/160 (7%)
Query: 60 SKGLALTGSRDTTARLWSLEQMYPL-RIFVGHKQDVTCARFHPKI-TYIGTGSYDKAVRL 117
+K L+GS D T +LW+ E + L + F GH+ V C F+PK + +G D+ V++
Sbjct: 108 TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKV 167
Query: 118 WSITDGASVRVFSDHVSPVLSIAFS-----PCGKYLASGGTGSYDKAVRLWSITDGASVR 172
WS+ G S F+ + + P Y+ T S D +++W + V
Sbjct: 168 WSL--GQSTPNFTLTTGQERGVNYVDYYPLPDKPYMI---TASDDLTIKIWDYQTKSCVA 222
Query: 173 VFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRV 212
H+S V F P + SG EDG + +T +V
Sbjct: 223 TLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKV 262
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 75/167 (44%), Gaps = 20/167 (11%)
Query: 61 KGLALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSI 120
K +T S D T ++W + + GH +V+ A FHP + I +GS D +++W+
Sbjct: 198 KPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNS 257
Query: 121 TDGASVRVFSDHVSPVLSIAFSPCGK--YLASGGTGSYDKAVRLWSITDGASVRVFSDHV 178
+ + + + IA P G+ Y+ASG +D + S+ +
Sbjct: 258 STYKVEKTLNVGLERSWCIATHPTGRKNYIASG----FDNGFTVLSLGND---------- 303
Query: 179 SPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVT 225
P LS+ P GK + SGG++ ++ T + +++ EP++
Sbjct: 304 EPTLSL--DPVGKLVWSGGKNAAA--SDIFTAVIRGNEEVEQDEPLS 346
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 52/108 (48%), Gaps = 3/108 (2%)
Query: 59 CSKGLALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLW 118
K + GS D R+++ + F H + HP Y+ +GS D V+LW
Sbjct: 65 ARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLW 124
Query: 119 SITDGASV-RVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSI 165
+ + ++ + F H V+ +AF+P K ++ +G D+ V++WS+
Sbjct: 125 NWENNWALEQTFEGHEHFVMCVAFNP--KDPSTFASGCLDRTVKVWSL 170
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 47/118 (39%), Gaps = 9/118 (7%)
Query: 85 RIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPC 144
+ F V FHP ++ T Y V +W+ VR +PV
Sbjct: 7 KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPV------RA 60
Query: 145 GKYLASGG---TGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGED 199
GK++A GS D +R+++ G V F H + SIA P Y+ SG +D
Sbjct: 61 GKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDD 118
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 27/126 (21%), Positives = 49/126 (38%), Gaps = 4/126 (3%)
Query: 127 RVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAF 186
+ FS+ V I F P ++ T Y V +W+ VR +PV + F
Sbjct: 7 KTFSNRSDRVKGIDFHPTEPWVL---TTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKF 63
Query: 187 SPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQ 246
++ G +D + TG + F + + S+ T +++GS TV+
Sbjct: 64 IARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHP-DYIRSIAVHPTKPYVLSGSDDLTVK 122
Query: 247 FYGWPS 252
+ W +
Sbjct: 123 LWNWEN 128
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 57.8 bits (138), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 69/161 (42%), Gaps = 10/161 (6%)
Query: 47 SGHDMTVWSVEACSKGLAL-TGSRDTTARLWSLEQ----MYPLRIFVGHKQDVTCARFHP 101
SGH V + G L +G D +W PL+ F H+ V + P
Sbjct: 227 SGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCP 286
Query: 102 ---KITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDK 158
+ G G+ D+ +R+W++ GA + H S V SI +SP K L SG + ++
Sbjct: 287 WQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKELISGHGFAQNQ 345
Query: 159 AVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGED 199
V +W A V H S VLS+ SP G +AS D
Sbjct: 346 LV-IWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAAD 385
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 67/148 (45%), Gaps = 12/148 (8%)
Query: 60 SKGLALTGSRDTTARLWSLEQMYPLRIFVGHK--QDVTCARFHPKITYIGTGSYDKAVRL 117
S G L + D + LWS L++ + + ++ + + Y+ G+ V+L
Sbjct: 114 SSGNVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQL 173
Query: 118 WSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGS---YDKAVRLWSITDGASVRVF 174
W + +R + H + V S++++ Y+ S G+ S + VR+ V
Sbjct: 174 WDVQQQKRLRNMTSHSARVGSLSWN---SYILSSGSRSGHIHHHDVRV----AEHHVATL 226
Query: 175 SDHVSPVLSIAFSPCGKYLASGGEDGLV 202
S H V + ++P G++LASGG D LV
Sbjct: 227 SGHSQEVCGLRWAPDGRHLASGGNDNLV 254
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 69/161 (42%), Gaps = 10/161 (6%)
Query: 47 SGHDMTVWSVEACSKGLAL-TGSRDTTARLWSLEQ----MYPLRIFVGHKQDVTCARFHP 101
SGH V + G L +G D +W PL+ F H+ V + P
Sbjct: 238 SGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCP 297
Query: 102 ---KITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDK 158
+ G G+ D+ +R+W++ GA + H S V SI +SP K L SG + ++
Sbjct: 298 WQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKELISGHGFAQNQ 356
Query: 159 AVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGED 199
V +W A V H S VLS+ SP G +AS D
Sbjct: 357 LV-IWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAAD 396
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 67/148 (45%), Gaps = 12/148 (8%)
Query: 60 SKGLALTGSRDTTARLWSLEQMYPLRIFVGHK--QDVTCARFHPKITYIGTGSYDKAVRL 117
S G L + D + LWS L++ + + ++ + + Y+ G+ V+L
Sbjct: 125 SSGNVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQL 184
Query: 118 WSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGS---YDKAVRLWSITDGASVRVF 174
W + +R + H + V S++++ Y+ S G+ S + VR+ V
Sbjct: 185 WDVQQQKRLRNMTSHSARVGSLSWN---SYILSSGSRSGHIHHHDVRV----AEHHVATL 237
Query: 175 SDHVSPVLSIAFSPCGKYLASGGEDGLV 202
S H V + ++P G++LASGG D LV
Sbjct: 238 SGHSQEVCGLRWAPDGRHLASGGNDNLV 265
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 72/158 (45%), Gaps = 12/158 (7%)
Query: 99 FHPKITYIGTGSYDKAVRLWSITDGAS---VRVFSD-HVSPVLSIAFSPCGKYLASGGTG 154
++P T + + D+ +R+W T+G S V S+ H V +A+SPCG YLAS
Sbjct: 24 WNPAGTLLASCGGDRRIRIWG-TEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLAS---A 79
Query: 155 SYDKAVRLWSIT--DGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRV 212
S+D +W D V H + V S+A++P G LA+ D V E+
Sbjct: 80 SFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDE 139
Query: 213 ISRFH-LQEH-EPVTSLVWSVTGETLVTGSLTGTVQFY 248
L H + V +VW + E L + S TV+ Y
Sbjct: 140 YECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLY 177
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 71/166 (42%), Gaps = 13/166 (7%)
Query: 46 TSGHDMTVWSV--EACSKGLALTGSRDTTARLWSLEQ--MYPLRIFVGHKQDVTCARFHP 101
+ GH TV V C LA + S D T +W Q + GH+ +V + P
Sbjct: 57 SEGHQRTVRKVAWSPCGNYLA-SASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAP 115
Query: 102 KITYIGTGSYDKAVRLWSITDG---ASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDK 158
+ T S DK+V +W + + V V + H V + + P + LAS SYD
Sbjct: 116 SGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASA---SYDD 172
Query: 159 AVRLW--SITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLV 202
V+L+ D H S V S+AF P G+ LAS +D V
Sbjct: 173 TVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTV 218
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 58/122 (47%), Gaps = 9/122 (7%)
Query: 48 GHDMTVWSVE-ACSKGLALTGSRDTTARLWSLEQ---MYPLRIFVGHKQDVTCARFHPKI 103
GH+ V SV A S L T SRD + +W +++ + + H QDV +HP
Sbjct: 103 GHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQ 162
Query: 104 TYIGTGSYDKAVRLW--SITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVR 161
+ + SYD V+L+ D H S V S+AF P G+ LAS S D+ VR
Sbjct: 163 ELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLAS---CSDDRTVR 219
Query: 162 LW 163
+W
Sbjct: 220 IW 221
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 55/115 (47%), Gaps = 9/115 (7%)
Query: 139 IAFSPCGKYLASGGTGSYDKAVRLWSITDGAS---VRVFSD-HVSPVLSIAFSPCGKYLA 194
+A++P G LAS G D+ +R+W T+G S V S+ H V +A+SPCG YLA
Sbjct: 22 LAWNPAGTLLASCGG---DRRIRIWG-TEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLA 77
Query: 195 SGGEDGLVLTHELTTGRVISRFHLQEHE-PVTSLVWSVTGETLVTGSLTGTVQFY 248
S D + L+ HE V S+ W+ +G L T S +V +
Sbjct: 78 SASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVW 132
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 69/161 (42%), Gaps = 10/161 (6%)
Query: 47 SGHDMTVWSVEACSKGLAL-TGSRDTTARLWSLEQ----MYPLRIFVGHKQDVTCARFHP 101
SGH V + G L +G D +W PL+ F H+ V + P
Sbjct: 147 SGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCP 206
Query: 102 ---KITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDK 158
+ G G+ D+ +R+W++ GA + H S V SI +SP K L SG + ++
Sbjct: 207 WQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKELISGHGFAQNQ 265
Query: 159 AVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGED 199
V +W A V H S VLS+ SP G +AS D
Sbjct: 266 LV-IWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAAD 305
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 67/148 (45%), Gaps = 12/148 (8%)
Query: 60 SKGLALTGSRDTTARLWSLEQMYPLRIFVGHK--QDVTCARFHPKITYIGTGSYDKAVRL 117
S G L + D + LWS L++ + + ++ + + Y+ G+ V+L
Sbjct: 34 SSGNVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQL 93
Query: 118 WSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGS---YDKAVRLWSITDGASVRVF 174
W + +R + H + V S++++ Y+ S G+ S + VR+ V
Sbjct: 94 WDVQQQKRLRNMTSHSARVGSLSWN---SYILSSGSRSGHIHHHDVRV----AEHHVATL 146
Query: 175 SDHVSPVLSIAFSPCGKYLASGGEDGLV 202
S H V + ++P G++LASGG D LV
Sbjct: 147 SGHSQEVCGLRWAPDGRHLASGGNDNLV 174
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 74/179 (41%), Gaps = 21/179 (11%)
Query: 87 FVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGK 146
GH++ +T +++ + + + S D + +W +G + H + SI K
Sbjct: 28 LTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTK 87
Query: 147 YLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGED-----GL 201
Y TGS D +++LW +++G V + V PV + FSPCG Y + ++ G
Sbjct: 88 YCV---TGSADYSIKLWDVSNGQCVATWKSPV-PVKRVEFSPCGNYFLAILDNVMKNPGS 143
Query: 202 VLTHELTTGRVISRFHLQEHEPVTSLV------------WSVTGETLVTGSLTGTVQFY 248
+ +E+ EP+ ++ WS G+ ++ G G + Y
Sbjct: 144 INIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKY 202
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 78/179 (43%), Gaps = 17/179 (9%)
Query: 47 SGHDMTVWSVEACSKG-LALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITY 105
+GH+ + V+ +G L + S+D++A +W L GH + Y
Sbjct: 29 TGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKY 88
Query: 106 IGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLAS--GGTGSYDKAVRLW 163
TGS D +++LW +++G V + V PV + FSPCG Y + ++ ++
Sbjct: 89 CVTGSADYSIKLWDVSNGQCVATWKSPV-PVKRVEFSPCGNYFLAILDNVMKNPGSINIY 147
Query: 164 SIT-DGASVRVFSDHVSPVLSI------------AFSPCGKYLASGGEDGLVLTHELTT 209
I D A+ + P+ I +S GKY+ +G +DG + ++++
Sbjct: 148 EIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSN 206
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 61/132 (46%), Gaps = 18/132 (13%)
Query: 90 HKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVS--PVLSIAFSPCGKY 147
H++ ++ +F P +TY T S D L D ++++V + + P+ + +P ++
Sbjct: 217 HEKSISDMQFSPDLTYFITSSRDTNSFL---VDVSTLQVLKKYETDCPLNTAVITPLKEF 273
Query: 148 LASGGTGSYDKAVRLWSITDGASV-----RVFSD-------HVSPVLSIAFSPCGKYLAS 195
+ GG G K V S +G ++F + H P+ ++A SP G AS
Sbjct: 274 IILGG-GQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYAS 332
Query: 196 GGEDGLVLTHEL 207
GGEDG + H
Sbjct: 333 GGEDGFIRLHHF 344
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 50/102 (49%), Gaps = 5/102 (4%)
Query: 132 HVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGK 191
HVS + + F P G+ L S S D +++WS+ DG++ R H + V IA G+
Sbjct: 135 HVSEITKLKFFPSGEALISS---SQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGR 191
Query: 192 YLASGGEDGLVLTHELTTGRVISRFHLQE--HEPVTSLVWSV 231
+ S DG + E TG I F+ +E H+ V S+ V
Sbjct: 192 NVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFV 233
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 64/279 (22%), Positives = 110/279 (39%), Gaps = 39/279 (13%)
Query: 23 TVEDVLANLESQKNLQSRYLPYYTSGHDMTVWSVEACSKGLAL-TGSRDTTARLWSLEQM 81
T E + L+S NLQ H + ++ G AL + S+D ++WS++
Sbjct: 113 TTEGDIKVLDSNFNLQREI----DQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDG 168
Query: 82 YPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSP---VLS 138
R +GH+ VT + + + S D +RLW G ++ F+ +P V S
Sbjct: 169 SNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNS 228
Query: 139 IA-FSPCGKYLASGGT--------GSYDKAVRLWSITDGASV-RVFSDHVSPVLSIAFS- 187
IA F + L T G+Y K V ++ +V VFS + L F+
Sbjct: 229 IALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTC 288
Query: 188 PC---------GKYLASGGEDGLVLTHELTTGRV-ISRFHLQEHEPVTSLVWSVTGETLV 237
C Y+ +G E+G++ +L + + F + E P+ + V+ G V
Sbjct: 289 SCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINN-VYFAAGALFV 347
Query: 238 TGSLTGTVQFYGWPSASKIGIGVYPRCAAQPVGFEAATL 276
+ G+ ++ K+ I P + FE T
Sbjct: 348 SS---------GFDTSIKLDIISDPESERPAIEFETPTF 377
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 50/102 (49%), Gaps = 5/102 (4%)
Query: 132 HVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGK 191
HVS + + F P G+ L S S D +++WS+ DG++ R H + V IA G+
Sbjct: 138 HVSEITKLKFFPSGEALISS---SQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGR 194
Query: 192 YLASGGEDGLVLTHELTTGRVISRFHLQE--HEPVTSLVWSV 231
+ S DG + E TG I F+ +E H+ V S+ V
Sbjct: 195 NVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFV 236
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 64/279 (22%), Positives = 110/279 (39%), Gaps = 39/279 (13%)
Query: 23 TVEDVLANLESQKNLQSRYLPYYTSGHDMTVWSVEACSKGLAL-TGSRDTTARLWSLEQM 81
T E + L+S NLQ H + ++ G AL + S+D ++WS++
Sbjct: 116 TTEGDIKVLDSNFNLQREI----DQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDG 171
Query: 82 YPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSP---VLS 138
R +GH+ VT + + + S D +RLW G ++ F+ +P V S
Sbjct: 172 SNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNS 231
Query: 139 IA-FSPCGKYLASGGT--------GSYDKAVRLWSITDGASV-RVFSDHVSPVLSIAFS- 187
IA F + L T G+Y K V ++ +V VFS + L F+
Sbjct: 232 IALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTC 291
Query: 188 PC---------GKYLASGGEDGLVLTHELTTGRV-ISRFHLQEHEPVTSLVWSVTGETLV 237
C Y+ +G E+G++ +L + + F + E P+ + V+ G V
Sbjct: 292 SCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINN-VYFAAGALFV 350
Query: 238 TGSLTGTVQFYGWPSASKIGIGVYPRCAAQPVGFEAATL 276
+ G+ ++ K+ I P + FE T
Sbjct: 351 SS---------GFDTSIKLDIISDPESERPAIEFETPTF 380
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 72/165 (43%), Gaps = 19/165 (11%)
Query: 53 VWSVEACSKGLALTGSRDTTARLWSLE----QMYPLRIFVGHKQDVTCARFHPKITYIGT 108
+WS + S+G+ TGS D +L S++ + + HK+ + + P + +
Sbjct: 17 IWSFD-FSQGILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAA 75
Query: 109 GSYDKAVRLWSITDGAS-------VRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVR 161
GS+D V +W+ + A + + H + V +A+S G YLA T S DK+V
Sbjct: 76 GSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLA---TCSRDKSVW 132
Query: 162 LWSITDGAS----VRVFSDHVSPVLSIAFSPCGKYLASGGEDGLV 202
+W + + V +H V + + P LAS D V
Sbjct: 133 IWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTV 177
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 65/243 (26%), Positives = 99/243 (40%), Gaps = 23/243 (9%)
Query: 27 VLANLESQKNLQSRYLPYYTSGHDMTVWSVEACSKGLAL-TGSRDTTARLW----SLEQM 81
+ A ES L GH+ V V + G L T SRD + +W S E+
Sbjct: 84 IWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEY 143
Query: 82 YPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWS--ITDGASVRVFSDHVSPVLSI 139
+ + H QDV +HP + + SYD VR+W D V V + H V S
Sbjct: 144 ECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSS 203
Query: 140 AFSPCGKYLASGGTGSYDKAVRLWSI--------TDGASVRVFSD-HVSPVLSIAFSPCG 190
F + + +GS D VR+W + + D H V ++A+ G
Sbjct: 204 DFDKT-EGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG 262
Query: 191 KYLASGGEDGLVLTHELTTG--RVISRFHL-QEHEPVTSLVW-SVTGET-LVTGSLTGTV 245
+AS G DG++ +E G +V ++ L + + W + G+T L TG G V
Sbjct: 263 -LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIV 321
Query: 246 QFY 248
F+
Sbjct: 322 NFW 324
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 66/154 (42%), Gaps = 19/154 (12%)
Query: 61 KGLALTGSRDTTARLWSLEQ-------MYPLRIFVGHK---QDVTCARFHPKITYIGTGS 110
G L+ S D T LW + + IF GH +DV H + G+ +
Sbjct: 194 NGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESL--FGSVA 251
Query: 111 YDKAVRLWSITDGASVR---VFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITD 167
D+ + +W + + + H + V ++F+P +++ + TGS DK V LW + +
Sbjct: 252 DDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILA--TGSADKTVALWDLRN 309
Query: 168 -GASVRVFSDHVSPVLSIAFSPCGK-YLASGGED 199
+ F H + + +SP + LAS G D
Sbjct: 310 LKLKLHSFESHKDEIFQVQWSPHNETILASSGTD 343
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Query: 55 SVEACSKGLALTGSRDTTARLWSLEQM-YPLRIFVGHKQDVTCARFHP-KITYIGTGSYD 112
S S+ + TGS D T LW L + L F HK ++ ++ P T + + D
Sbjct: 284 SFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTD 343
Query: 113 KAVRLWSIT 121
+ + +W ++
Sbjct: 344 RRLHVWDLS 352
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 66/154 (42%), Gaps = 19/154 (12%)
Query: 61 KGLALTGSRDTTARLWSLEQ-------MYPLRIFVGHK---QDVTCARFHPKITYIGTGS 110
G L+ S D T LW + + IF GH +DV H + G+ +
Sbjct: 196 NGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESL--FGSVA 253
Query: 111 YDKAVRLWSITDGASVR---VFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITD 167
D+ + +W + + + H + V ++F+P +++ + TGS DK V LW + +
Sbjct: 254 DDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILA--TGSADKTVALWDLRN 311
Query: 168 -GASVRVFSDHVSPVLSIAFSPCGK-YLASGGED 199
+ F H + + +SP + LAS G D
Sbjct: 312 LKLKLHSFESHKDEIFQVQWSPHNETILASSGTD 345
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Query: 55 SVEACSKGLALTGSRDTTARLWSLEQM-YPLRIFVGHKQDVTCARFHP-KITYIGTGSYD 112
S S+ + TGS D T LW L + L F HK ++ ++ P T + + D
Sbjct: 286 SFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTD 345
Query: 113 KAVRLWSIT 121
+ + +W ++
Sbjct: 346 RRLHVWDLS 354
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 66/154 (42%), Gaps = 19/154 (12%)
Query: 61 KGLALTGSRDTTARLWSLEQ-------MYPLRIFVGHK---QDVTCARFHPKITYIGTGS 110
G L+ S D T LW + + IF GH +DV H + G+ +
Sbjct: 198 NGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESL--FGSVA 255
Query: 111 YDKAVRLWSITDGASVR---VFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITD 167
D+ + +W + + + H + V ++F+P +++ + TGS DK V LW + +
Sbjct: 256 DDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILA--TGSADKTVALWDLRN 313
Query: 168 -GASVRVFSDHVSPVLSIAFSPCGK-YLASGGED 199
+ F H + + +SP + LAS G D
Sbjct: 314 LKLKLHSFESHKDEIFQVQWSPHNETILASSGTD 347
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Query: 55 SVEACSKGLALTGSRDTTARLWSLEQM-YPLRIFVGHKQDVTCARFHP-KITYIGTGSYD 112
S S+ + TGS D T LW L + L F HK ++ ++ P T + + D
Sbjct: 288 SFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTD 347
Query: 113 KAVRLWSIT 121
+ + +W ++
Sbjct: 348 RRLHVWDLS 356
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 66/153 (43%), Gaps = 19/153 (12%)
Query: 62 GLALTGSRDTTARLWSLEQ-------MYPLRIFVGHK---QDVTCARFHPKITYIGTGSY 111
G L+ S D T LW + + IF GH +DV H + G+ +
Sbjct: 193 GHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESL--FGSVAD 250
Query: 112 DKAVRLW---SITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITD- 167
D+ + +W S T + H + V ++F+P +++ + TGS DK V LW + +
Sbjct: 251 DQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILA--TGSADKTVALWDLRNL 308
Query: 168 GASVRVFSDHVSPVLSIAFSPCGK-YLASGGED 199
+ F H + + +SP + LAS G D
Sbjct: 309 KLKLHTFESHKDEIFQVHWSPHNETILASSGTD 341
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
Query: 55 SVEACSKGLALTGSRDTTARLWSLEQM-YPLRIFVGHKQDVTCARFHP-KITYIGTGSYD 112
S S+ + TGS D T LW L + L F HK ++ + P T + + D
Sbjct: 282 SFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTD 341
Query: 113 KAVRLWSIT 121
+ + +W ++
Sbjct: 342 RRLNVWDLS 350
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 66/153 (43%), Gaps = 19/153 (12%)
Query: 62 GLALTGSRDTTARLWSLEQ-------MYPLRIFVGHK---QDVTCARFHPKITYIGTGSY 111
G L+ S D T LW + + IF GH +DV H + G+ +
Sbjct: 193 GHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESL--FGSVAD 250
Query: 112 DKAVRLW---SITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITD- 167
D+ + +W S T + H + V ++F+P +++ + TGS DK V LW + +
Sbjct: 251 DQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILA--TGSADKTVALWDLRNL 308
Query: 168 GASVRVFSDHVSPVLSIAFSPCGK-YLASGGED 199
+ F H + + +SP + LAS G D
Sbjct: 309 KLKLHTFESHKDEIFQVHWSPHNETILASSGTD 341
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
Query: 55 SVEACSKGLALTGSRDTTARLWSLEQM-YPLRIFVGHKQDVTCARFHP-KITYIGTGSYD 112
S S+ + TGS D T LW L + L F HK ++ + P T + + D
Sbjct: 282 SFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTD 341
Query: 113 KAVRLWSIT 121
+ + +W ++
Sbjct: 342 RRLNVWDLS 350
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 47/107 (43%), Gaps = 1/107 (0%)
Query: 89 GHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYL 148
GH +V + + +G D V++W ++H + V ++A+ P L
Sbjct: 215 GHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNL 274
Query: 149 ASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLAS 195
+ G G+ DK + W+ GA V D S V S+ +SP K + S
Sbjct: 275 LATGGGTMDKQIHFWNAATGARVNTV-DAGSQVTSLIWSPHSKEIMS 320
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 69/161 (42%), Gaps = 13/161 (8%)
Query: 75 LWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSI-TDGASVRVFSDHV 133
++ +E LR GH+ V C ++ + + +GS A+ + + H
Sbjct: 160 IYDVESQTKLRTMAGHQARVGCLSWNRHV--LSSGSRSGAIHHHDVRIANHQIGTLQGHS 217
Query: 134 SPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPC-GKY 192
S V +A+ G LASGG D V++W ++H + V ++A+ P
Sbjct: 218 SEVCGLAWRSDGLQLASGGN---DNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNL 274
Query: 193 LASGG---EDGLVLTHELTTGRVISRFHLQEHEPVTSLVWS 230
LA+GG + + + T RV + + VTSL+WS
Sbjct: 275 LATGGGTMDKQIHFWNAATGARVNT---VDAGSQVTSLIWS 312
Score = 28.1 bits (61), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 4/80 (5%)
Query: 177 HVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHE-PVTSLVWSV-TGE 234
H S V +A+ G LASGG D +V + + I +F H V ++ W
Sbjct: 216 HSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSS--IPKFTKTNHNAAVKAVAWCPWQSN 273
Query: 235 TLVTGSLTGTVQFYGWPSAS 254
L TG T Q + W +A+
Sbjct: 274 LLATGGGTMDKQIHFWNAAT 293
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 59/142 (41%), Gaps = 23/142 (16%)
Query: 49 HDMTVWSVEACSKGLALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYI-G 107
H M+ S + C L G+R +L L+ I GH+Q++ + P+ YI
Sbjct: 147 HHMSPVSTKHC---LVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILA 203
Query: 108 TGSYDKAVRLWSITDGASVRVFSD----------------HVSPVLSIAFSPCGKYLASG 151
T S D V+LW + + + D H V + F+ G +L +
Sbjct: 204 TASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTV 263
Query: 152 GTGSYDKAVRLWSITDGASVRV 173
GT D +RLW+ ++G + V
Sbjct: 264 GT---DNRMRLWNSSNGENTLV 282
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 53/108 (49%), Gaps = 8/108 (7%)
Query: 63 LALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKI-TYIGTGSYDKAVRLWSIT 121
LA+ GSR R+ + M ++ +VGH + +FHP+ + + S D A+RLW+I
Sbjct: 83 LAVAGSR-GIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQ 141
Query: 122 DGASVRVF---SDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSIT 166
V +F H VLS + G+ + S G D +++LW I
Sbjct: 142 TDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGM---DHSLKLWRIN 186
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 53/108 (49%), Gaps = 8/108 (7%)
Query: 63 LALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKI-TYIGTGSYDKAVRLWSIT 121
LA+ GSR R+ + M ++ +VGH + +FHP+ + + S D A+RLW+I
Sbjct: 87 LAVAGSR-GIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQ 145
Query: 122 DGASVRVF---SDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSIT 166
V +F H VLS + G+ + S G D +++LW I
Sbjct: 146 TDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGM---DHSLKLWRIN 190
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 53/108 (49%), Gaps = 8/108 (7%)
Query: 63 LALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKI-TYIGTGSYDKAVRLWSIT 121
LA+ GSR R+ + M ++ +VGH + +FHP+ + + S D A+RLW+I
Sbjct: 124 LAVAGSR-GIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQ 182
Query: 122 DGASVRVF---SDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSIT 166
V +F H VLS + G+ + S G D +++LW I
Sbjct: 183 TDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGM---DHSLKLWRIN 227
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 53/108 (49%), Gaps = 8/108 (7%)
Query: 63 LALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKI-TYIGTGSYDKAVRLWSIT 121
LA+ GSR R+ + M ++ +VGH + +FHP+ + + S D A+RLW+I
Sbjct: 88 LAVAGSR-GIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQ 146
Query: 122 DGASVRVF---SDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSIT 166
V +F H VLS + G+ + S G D +++LW I
Sbjct: 147 TDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGM---DHSLKLWRIN 191
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 53/108 (49%), Gaps = 8/108 (7%)
Query: 63 LALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKI-TYIGTGSYDKAVRLWSIT 121
LA+ GSR R+ + M ++ +VGH + +FHP+ + + S D A+RLW+I
Sbjct: 87 LAVAGSR-GIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQ 145
Query: 122 DGASVRVF---SDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSIT 166
V +F H VLS + G+ + S G D +++LW I
Sbjct: 146 TDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGM---DHSLKLWRIN 190
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 66/153 (43%), Gaps = 19/153 (12%)
Query: 62 GLALTGSRDTTARLWSLEQM-------YPLRIFVGHK---QDVTCARFHPKITYIGTGSY 111
G L+ S D T LW + + IF GH +DV+ H + G+ +
Sbjct: 191 GHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESL--FGSVAD 248
Query: 112 DKAVRLWSITDGASVR---VFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITD- 167
D+ + +W + + H + V ++F+P +++ + TGS DK V LW + +
Sbjct: 249 DQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILA--TGSADKTVALWDLRNL 306
Query: 168 GASVRVFSDHVSPVLSIAFSPCGK-YLASGGED 199
+ F H + + +SP + LAS G D
Sbjct: 307 KLKLHSFESHKDEIFQVQWSPHNETILASSGTD 339
Score = 31.2 bits (69), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Query: 55 SVEACSKGLALTGSRDTTARLWSLEQM-YPLRIFVGHKQDVTCARFHP-KITYIGTGSYD 112
S S+ + TGS D T LW L + L F HK ++ ++ P T + + D
Sbjct: 280 SFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTD 339
Query: 113 KAVRLWSIT 121
+ + +W ++
Sbjct: 340 RRLNVWDLS 348
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/141 (21%), Positives = 59/141 (41%), Gaps = 4/141 (2%)
Query: 75 LWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVS 134
++ + + P +GH ++ F+ + + S D +R+W +G S F H
Sbjct: 231 VYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQ 290
Query: 135 PVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLA 194
++S ++ K ++ S D +VRLWS+ + + P+ + S G+ A
Sbjct: 291 SIVSASWVGDDKVISC----SMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYA 346
Query: 195 SGGEDGLVLTHELTTGRVISR 215
DG V ++L SR
Sbjct: 347 VAFMDGQVNVYDLKKLNSKSR 367
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 37/199 (18%), Positives = 80/199 (40%), Gaps = 22/199 (11%)
Query: 65 LTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGA 124
+TG + RLW+ + L + H+ + +++ T+I + + LW++ G
Sbjct: 124 VTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGT 182
Query: 125 SVRVF---------------SDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGA 169
++ F S S + + + K++ G G A+ ++ IT+
Sbjct: 183 VMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKG----AIFVYQITEKT 238
Query: 170 SVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVW 229
H P+ + F+ K L S +DG + G + F+ + + S W
Sbjct: 239 PTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFY-GHSQSIVSASW 297
Query: 230 SVTGETLVTGSLTGTVQFY 248
V + +++ S+ G+V+ +
Sbjct: 298 -VGDDKVISCSMDGSVRLW 315
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 44/96 (45%), Gaps = 9/96 (9%)
Query: 94 VTCARFHPKI---TYIGTGSYDKAVRLWSITDGASV--RVFSDHVSPVLSIAFSPCGKYL 148
+ C F P ++ GS+ VR W + D + H PVL + +S G +
Sbjct: 42 IGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKV 101
Query: 149 ASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSI 184
T S DK ++W ++ ++++ + H +PV +I
Sbjct: 102 F---TASCDKTAKMWDLSSNQAIQI-AQHDAPVKTI 133
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 108 TGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLW 163
T S DK ++W ++ ++++ + H +PV +I + Y + TGS+DK ++ W
Sbjct: 103 TASCDKTAKMWDLSSNQAIQI-AQHDAPVKTIHWIKAPNY-SCVMTGSWDKTLKFW 156
Score = 32.0 bits (71), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 7/58 (12%)
Query: 65 LTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFH----PKITYIGTGSYDKAVRLW 118
T S D TA++W L ++I + D H P + + TGS+DK ++ W
Sbjct: 102 FTASCDKTAKMWDLSSNQAIQI---AQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFW 156
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 5/89 (5%)
Query: 32 ESQKNLQSRYLPYYTSGHDMTVWSVEACSKGL-ALTGSRDTTARLWSLEQMYPLRIFVGH 90
E++ + S++ Y HD V +V S G A++GS+D ++W L Q L + H
Sbjct: 112 ENETLIVSKFCKYE---HDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAH 168
Query: 91 KQDVTCARFHP-KITYIGTGSYDKAVRLW 118
VTC P K + + S D + LW
Sbjct: 169 AAQVTCVAASPHKDSVFLSCSEDNRILLW 197
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 66/154 (42%), Gaps = 16/154 (10%)
Query: 14 FIQNSFKPETVEDVLANLESQKNLQSRYLPYYTSGHDMTVWSVEACSKGLALTGSRDTTA 73
F +N F + + + ++ K +++ ++ H+ V + G ++ S D
Sbjct: 153 FSENKFLTASADKTIKLWQNDKVIKT-----FSGIHNDVVRHLAVVDDGHFISCSNDGLI 207
Query: 74 RLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHV 133
+L LR + GH+ V C + P + G D+ VR+WS +G+ +V +
Sbjct: 208 KLVDXHTGDVLRTYEGHESFVYCIKLLPNGDIVSCGE-DRTVRIWSKENGSLKQVIT--- 263
Query: 134 SPVLSIAFSPCGKYLASGG---TGSYDKAVRLWS 164
P +SI C S G GS D VR++S
Sbjct: 264 LPAISIWSVDC----XSNGDIIVGSSDNLVRIFS 293
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 47/202 (23%), Positives = 75/202 (37%), Gaps = 61/202 (30%)
Query: 68 SRDTTARLWSLEQMY--------------------------------------------- 82
SRD T RLWS + +
Sbjct: 36 SRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTXINGVPLFATSGED 95
Query: 83 PLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLS---I 139
PL +GH+ +V F + +GS+DK ++W +G+ V H + V +
Sbjct: 96 PLYTLIGHQGNVCSLSFQDGVVI--SGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVV 151
Query: 140 AFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSD-HVSPVLSIAFSPCGKYLASGGE 198
+FS K+L T S DK ++LW + ++ FS H V +A G ++ S
Sbjct: 152 SFSE-NKFL----TASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGHFI-SCSN 203
Query: 199 DGLVLTHELTTGRVISRFHLQE 220
DGL+ + TG V+ + E
Sbjct: 204 DGLIKLVDXHTGDVLRTYEGHE 225
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 36.2 bits (82), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 5/90 (5%)
Query: 31 LESQKNLQSRYLPYYTSGHDMTVWSVEACSKGL-ALTGSRDTTARLWSLEQMYPLRIFVG 89
LE + L +++ Y HD V ++ S G A++G +D + ++W L Q L+ +
Sbjct: 123 LEKESLLVNKFAKYE---HDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNA 179
Query: 90 HKQDVTCARFHP-KITYIGTGSYDKAVRLW 118
H +V C P K T + D + LW
Sbjct: 180 HSSEVNCVAACPGKDTIFLSCGEDGRILLW 209
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 35.8 bits (81), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 46/217 (21%), Positives = 76/217 (35%), Gaps = 56/217 (25%)
Query: 85 RIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITD-----GASVRVFSDHVSPVLSI 139
I+ H T A+ P Y +G VR+W T ++ VFS PV I
Sbjct: 53 EIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFS---GPVKDI 109
Query: 140 AFSPCGKYLASGGTGS--------YD-----------------------KAVRLWSITDG 168
++ K +A+ G G +D + R+ S +D
Sbjct: 110 SWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDD 169
Query: 169 ASVRVF-----------SDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRF- 216
+V +F +H V S+ ++P G AS G DG ++ + G F
Sbjct: 170 NTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFE 229
Query: 217 -----HLQEHEPVTSLVWSVTGETLVTGSLTGTVQFY 248
++ V L WS G + + S T++ +
Sbjct: 230 DDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIW 266
Score = 32.3 bits (72), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 37/166 (22%), Positives = 70/166 (42%), Gaps = 16/166 (9%)
Query: 95 TCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSP--VLSIAFSPCGKYLASGG 152
+C ++ G D V ++ ++ GASV V P + S+AFS G +L +
Sbjct: 452 SCVALSNDKQFVAVGGQDSKVHVYKLS-GASVSEVKTIVHPAEITSVAFSNNGAFLVAT- 509
Query: 153 TGSYDKAVRLWSITDG---ASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTT 209
+ V +S+ + A ++ H + V +++SP LA+G D V+ +
Sbjct: 510 --DQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNK 567
Query: 210 GR----VISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWP 251
+I H V S++W + T+V+ ++F+ P
Sbjct: 568 PSDHPIIIKGAHAM--SSVNSVIW-LNETTIVSAGQDSNIKFWNVP 610
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 35.0 bits (79), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 61/147 (41%), Gaps = 18/147 (12%)
Query: 106 IGTGSYDKAVRLWSITDGA-------SVRVFSDHVSPVLSIAFSPCGK-YLASGGTGSYD 157
I +GS D V +W I DG V H V +A+ P + L S G D
Sbjct: 97 IASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGC---D 153
Query: 158 KAVRLWSITDGASVRVFSDHVSP--VLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISR 215
+ +W + GA+V V P + S+ +S G + + D V E G V++
Sbjct: 154 NVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAE 213
Query: 216 FHLQEHE---PVTSLVWSVTGETLVTG 239
+ HE PV + V+ G+ L TG
Sbjct: 214 KD-RPHEGTRPVHA-VFVSEGKILTTG 238
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 34.7 bits (78), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 61/147 (41%), Gaps = 18/147 (12%)
Query: 106 IGTGSYDKAVRLWSITDGA-------SVRVFSDHVSPVLSIAFSPCGK-YLASGGTGSYD 157
I +GS D V +W I DG V H V +A+ P + L S G D
Sbjct: 97 IASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGX---D 153
Query: 158 KAVRLWSITDGASVRVFSDHVSP--VLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISR 215
+ +W + GA+V V P + S+ +S G + + D V E G V++
Sbjct: 154 NVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAE 213
Query: 216 FHLQEHE---PVTSLVWSVTGETLVTG 239
+ HE PV + V+ G+ L TG
Sbjct: 214 KD-RPHEGTRPVHA-VFVSEGKILTTG 238
>pdb|2I3T|A Chain A, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|C Chain C, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|E Chain E, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|G Chain G, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
Length = 341
Score = 34.7 bits (78), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 28/63 (44%)
Query: 180 PVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTG 239
PV SI FSP K+L + G DG++ L T + I F + V + S L T
Sbjct: 253 PVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLATS 312
Query: 240 SLT 242
T
Sbjct: 313 DDT 315
>pdb|2I3S|A Chain A, Bub3 Complex With Bub1 Glebs Motif
pdb|2I3S|C Chain C, Bub3 Complex With Bub1 Glebs Motif
pdb|2I3S|E Chain E, Bub3 Complex With Bub1 Glebs Motif
Length = 349
Score = 34.7 bits (78), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 28/63 (44%)
Query: 180 PVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTG 239
PV SI FSP K+L + G DG++ L T + I F + V + S L T
Sbjct: 253 PVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLATS 312
Query: 240 SLT 242
T
Sbjct: 313 DDT 315
>pdb|1YFQ|A Chain A, High Resolution S. Cerevisiae Bub3 Mitotic Checkpoint
Protein
Length = 342
Score = 34.7 bits (78), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 28/63 (44%)
Query: 180 PVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTG 239
PV SI FSP K+L + G DG++ L T + I F + V + S L T
Sbjct: 253 PVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLATS 312
Query: 240 SLT 242
T
Sbjct: 313 DDT 315
>pdb|1U4C|A Chain A, Structure Of Spindle Checkpoint Protein Bub3
pdb|1U4C|B Chain B, Structure Of Spindle Checkpoint Protein Bub3
Length = 349
Score = 34.7 bits (78), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 28/63 (44%)
Query: 180 PVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTG 239
PV SI FSP K+L + G DG++ L T + I F + V + S L T
Sbjct: 253 PVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLATS 312
Query: 240 SLT 242
T
Sbjct: 313 DDT 315
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 5/75 (6%)
Query: 122 DGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITD--GASVRVFS-DHV 178
DG + H V +A +PC + + T S D+ V++W + G + ++S H
Sbjct: 239 DGKELWNLRMHKKKVTHVALNPCCDWFLA--TASVDQTVKIWDLRQVRGKASFLYSLPHR 296
Query: 179 SPVLSIAFSPCGKYL 193
PV + FSP G L
Sbjct: 297 HPVNAACFSPDGARL 311
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 5/75 (6%)
Query: 122 DGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITD--GASVRVFS-DHV 178
DG + H V +A +PC + + T S D+ V++W + G + ++S H
Sbjct: 239 DGKELWNLRMHKKKVTHVALNPCCDWFLA--TASVDQTVKIWDLRQVRGKASFLYSLPHR 296
Query: 179 SPVLSIAFSPCGKYL 193
PV + FSP G L
Sbjct: 297 HPVNAACFSPDGARL 311
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 5/75 (6%)
Query: 122 DGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITD--GASVRVFS-DHV 178
DG + H V +A +PC + + T S D+ V++W + G + ++S H
Sbjct: 240 DGKELWNLRMHKKKVTHVALNPCCDWFLA--TASVDQTVKIWDLRQVRGKASFLYSLPHR 297
Query: 179 SPVLSIAFSPCGKYL 193
PV + FSP G L
Sbjct: 298 HPVNAACFSPDGARL 312
>pdb|3EI1|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4
Photoproduct Containing Dna-Duplex
pdb|3EI2|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Abasic Site
Containing Dna-Duplex
pdb|3EI3|B Chain B, Structure Of The Hsddb1-Drddb2 Complex
Length = 383
Score = 31.2 bits (69), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 71/167 (42%), Gaps = 23/167 (13%)
Query: 63 LALTGSRDTTARLWSLEQMYPLRIFVG---HKQDVTCARFHP-KITYIGTGSYDKAVRLW 118
L T S D T +LW L + ++ H++ V A F+P T + T +R++
Sbjct: 219 LMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVY 278
Query: 119 SITDGASV--------RVFSDHVSPVLSIAFSP------CGKYLASGGTGSYDKAVRLWS 164
S D + R F H++P+ + + P G+Y + + + ++
Sbjct: 279 SSYDWSKPDQIIIHPHRQFQ-HLTPIKA-TWHPMYDLIVAGRYPDDQLLLNDKRTIDIYD 336
Query: 165 ITDGASVRVFSD-HVSPVLSI-AFSPCGKYLASG-GEDGLVLTHELT 208
G V D + + ++S+ FSP G LASG G + L+ E T
Sbjct: 337 ANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGMGFNILIWNREDT 383
>pdb|4A08|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Duplex (
Purine At D-1 Position) At 3.0 A Resolution (Cpd 1)
pdb|4A09|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 15 Bp Cpd-Duplex
(Purine At D-1 Position) At 3.1 A Resolution (Cpd 2)
pdb|4A0A|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.6 A Resolution (Cpd 3)
pdb|4A0B|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0B|D Chain D, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0K|D Chain D, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|B Chain B, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|D Chain D, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 382
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 71/167 (42%), Gaps = 23/167 (13%)
Query: 63 LALTGSRDTTARLWSLEQMYPLRIFVG---HKQDVTCARFHP-KITYIGTGSYDKAVRLW 118
L T S D T +LW L + ++ H++ V A F+P T + T +R++
Sbjct: 218 LMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVY 277
Query: 119 SITDGASV--------RVFSDHVSPVLSIAFSP------CGKYLASGGTGSYDKAVRLWS 164
S D + R F H++P+ + + P G+Y + + + ++
Sbjct: 278 SSYDWSKPDQIIIHPHRQFQ-HLTPIKA-TWHPMYDLIVAGRYPDDQLLLNDKRTIDIYD 335
Query: 165 ITDGASVRVFSD-HVSPVLSI-AFSPCGKYLASG-GEDGLVLTHELT 208
G V D + + ++S+ FSP G LASG G + L+ E T
Sbjct: 336 ANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGMGFNILIWNREDT 382
>pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|I Chain I, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|J Chain J, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
Length = 351
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 65/150 (43%), Gaps = 33/150 (22%)
Query: 105 YIGTGSYDKAVRLWSITDGASVRVFSD----HVSPVLSIAF-SP-CGKYLASGGTGSYDK 158
++ T S D+ ++++ + S SD H S +++I + SP G+ +AS SYDK
Sbjct: 25 HVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASA---SYDK 81
Query: 159 AVRLWS---ITDGASVR------VFSDHVSPVLSIAFSPC--GKYLASGGEDGLVLTHEL 207
V+LW + S R +D + S+ F+P G LA G DG++ ++
Sbjct: 82 TVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDA 141
Query: 208 TTGRVISRFHLQEHEPVTSLVWSVTGETLV 237
EP W++T E V
Sbjct: 142 L-------------EPSDLRSWTLTSEXKV 158
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 49/119 (41%), Gaps = 5/119 (4%)
Query: 89 GHKQDVTCARFHPKI----TYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPC 144
GHK + + P I I TG D +R++ IT+ S + ++ S
Sbjct: 212 GHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNXFDNSAD 271
Query: 145 GKYLASGGTGSY-DKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLV 202
A G + S ++ L S + DH V S++++ G L+S G+DG V
Sbjct: 272 VDXDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKV 330
>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3G|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
Length = 351
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 65/150 (43%), Gaps = 33/150 (22%)
Query: 105 YIGTGSYDKAVRLWSITDGASVRVFSD----HVSPVLSIAF-SP-CGKYLASGGTGSYDK 158
++ T S D+ ++++ + S SD H S +++I + SP G+ +AS SYDK
Sbjct: 25 HVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASA---SYDK 81
Query: 159 AVRLWS---ITDGASVR------VFSDHVSPVLSIAFSPC--GKYLASGGEDGLVLTHEL 207
V+LW + S R +D + S+ F+P G LA G DG++ ++
Sbjct: 82 TVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDA 141
Query: 208 TTGRVISRFHLQEHEPVTSLVWSVTGETLV 237
EP W++T E V
Sbjct: 142 L-------------EPSDLRSWTLTSEMKV 158
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 49/119 (41%), Gaps = 5/119 (4%)
Query: 89 GHKQDVTCARFHPKI----TYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPC 144
GHK + + P I I TG D +R++ IT+ S + ++ S
Sbjct: 212 GHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSAD 271
Query: 145 GKYLASGGTGSY-DKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLV 202
A G + S ++ L S + DH V S++++ G L+S G+DG V
Sbjct: 272 VDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKV 330
>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX
pdb|3EWE|C Chain C, Crystal Structure Of The Nup85SEH1 COMPLEX
Length = 349
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 65/150 (43%), Gaps = 33/150 (22%)
Query: 105 YIGTGSYDKAVRLWSITDGASVRVFSD----HVSPVLSIAF-SP-CGKYLASGGTGSYDK 158
++ T S D+ ++++ + S SD H S +++I + SP G+ +AS SYDK
Sbjct: 23 HVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASA---SYDK 79
Query: 159 AVRLWS---ITDGASVR------VFSDHVSPVLSIAFSPC--GKYLASGGEDGLVLTHEL 207
V+LW + S R +D + S+ F+P G LA G DG++ ++
Sbjct: 80 TVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDA 139
Query: 208 TTGRVISRFHLQEHEPVTSLVWSVTGETLV 237
EP W++T E V
Sbjct: 140 L-------------EPSDLRSWTLTSEMKV 156
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 49/119 (41%), Gaps = 5/119 (4%)
Query: 89 GHKQDVTCARFHPKI----TYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPC 144
GHK + + P I I TG D +R++ IT+ S + ++ S
Sbjct: 210 GHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSAD 269
Query: 145 GKYLASGGTGSY-DKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLV 202
A G + S ++ L S + DH V S++++ G L+S G+DG V
Sbjct: 270 VDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKV 328
>pdb|1EJI|A Chain A, Recombinant Serine Hydroxymethyltransferase (Mouse)
pdb|1EJI|B Chain B, Recombinant Serine Hydroxymethyltransferase (Mouse)
pdb|1EJI|C Chain C, Recombinant Serine Hydroxymethyltransferase (Mouse)
pdb|1EJI|D Chain D, Recombinant Serine Hydroxymethyltransferase (Mouse)
Length = 478
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 6/70 (8%)
Query: 80 QMYPLRIFVGHKQ-DVTCARFHPKITYIGTGSYDKAV---RLWSITD--GASVRVFSDHV 133
++YP ++ + Q + + FHPK+ GT Y + + RL I D GA + H+
Sbjct: 167 KVYPETGYINYDQLEENASLFHPKLIIAGTSCYSRNLDYARLRKIADDNGAYLXADXAHI 226
Query: 134 SPVLSIAFSP 143
S +++ P
Sbjct: 227 SGLVAAGVVP 236
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 55/263 (20%), Positives = 105/263 (39%), Gaps = 55/263 (20%)
Query: 42 LPYYTSGHDMTVWSVEACSKGLA-------LTGSRDTTARLWSLEQMYPLRIFVGHKQDV 94
L +Y GHD + ++ +KG+ ++GS D WS M+ + D
Sbjct: 321 LNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDN 380
Query: 95 TCARFHPKITYIGTGSYDKAVRLWSITD---GASVRVFSDHVSPVLSIAFSPCGKYLASG 151
+ A+ + I S+D +++ IT G+ +V S + ++ + +
Sbjct: 381 SKAQEYSSI------SWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQS 434
Query: 152 GTGSYDKAVRLWS---------------ITDGASVRVFS--------DHVSPVLS----I 184
TG K+VRL S + +G +++VF D +P+ + I
Sbjct: 435 FTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYI 494
Query: 185 AFSPCGKYLASGGEDGLVLTHELTTGRV-ISRFHLQEHEPVTSLVWS----------VTG 233
+ SP Y+A+G G +L ++L + V SR+ + + + ++ W +
Sbjct: 495 SISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSK-INAISWKPAEKGANEEEIEE 553
Query: 234 ETLVTGSLTGTVQFYGWPSASKI 256
+ + TGSL + Y KI
Sbjct: 554 DLVATGSLDTNIFIYSVKRPMKI 576
>pdb|4A18|J Chain J, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 26s Rrna And
Proteins Of Molecule 1
pdb|4A1B|J Chain J, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 26s Rrna And
Proteins Of Molecule 3.
pdb|4A1D|J Chain J, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 26s Rrna And
Proteins Of Molecule 4.
pdb|4A19|J Chain J, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 26s Rrna And
Proteins Of Molecule 2
Length = 248
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 33/80 (41%)
Query: 240 SLTGTVQFYGWPSASKIGIGVYPRCAAQPVGFEAATLAANSRVRTLREMHEIVGPVVVVE 299
S+ GT +K G+ V C + +L N RVR + E +G VV
Sbjct: 55 SIGGTRIVGRVTCGNKNGLLVPNTCNDNELRNIRNSLPDNVRVRRIEEKLSALGNCVVAN 114
Query: 300 SFIVEIRPDKWYEANLIVLD 319
++ I PD E+ I+ D
Sbjct: 115 DYVALIHPDLDRESEEIIAD 134
>pdb|2YUE|A Chain A, Solution Structure Of The Neuz (Nhr) Domain In Neuralized
From Drosophila Melanogaster
Length = 168
Score = 28.1 bits (61), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 31 LESQKNLQSRYLPYYTSGHDMTVWSVEACSKGLALTGSRDTTARLWSLEQMY 82
L Q + L YY +G ++ + KG+ LTG DT + LW++ +Y
Sbjct: 101 LHEQYCEKDNILYYYVNGAGDVIYGINNEEKGVILTGI-DTRSLLWTVIDIY 151
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,116,876
Number of Sequences: 62578
Number of extensions: 459947
Number of successful extensions: 1693
Number of sequences better than 100.0: 99
Number of HSP's better than 100.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 930
Number of HSP's gapped (non-prelim): 348
length of query: 351
length of database: 14,973,337
effective HSP length: 100
effective length of query: 251
effective length of database: 8,715,537
effective search space: 2187599787
effective search space used: 2187599787
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)