RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy519
(351 letters)
>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor
acetylhydrolase IB subunit alpha {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 317
Score = 113 bits (282), Expect = 2e-29
Identities = 50/223 (22%), Positives = 92/223 (41%), Gaps = 18/223 (8%)
Query: 43 PYYTSGHDMTVWSVEACSKGLALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPK 102
+ ++ SRD T ++W ++ Y ++ F GH++ V R +
Sbjct: 95 RTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQD 154
Query: 103 ITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGG---------- 152
T I + S D+ VR+W + +H V I+++P Y +
Sbjct: 155 GTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSG 214
Query: 153 -------TGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTH 205
+GS DK +++W ++ G + H + V + F GK++ S +D +
Sbjct: 215 KPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVW 274
Query: 206 ELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFY 248
+ R + + EH VTSL + T +VTGS+ TV+ +
Sbjct: 275 DYKNKRCMKTLNAHEH-FVTSLDFHKTAPYVVTGSVDQTVKVW 316
Score = 106 bits (264), Expect = 6e-27
Identities = 41/188 (21%), Positives = 74/188 (39%), Gaps = 24/188 (12%)
Query: 36 NLQSRYLPYYTSGHDMTVWSVEACSKG-LALTGSRDTTARLWSLEQMYPLRIFVGHKQDV 94
+Q+ Y +GH V V G L + S D T R+W + H+ V
Sbjct: 129 EVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVV 188
Query: 95 TCARFHPKIT--------------------YIGTGSYDKAVRLWSITDGASVRVFSDHVS 134
C + P+ + ++ +GS DK +++W ++ G + H +
Sbjct: 189 ECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDN 248
Query: 135 PVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLA 194
V + F GK++ S + DK +R+W + ++ + H V S+ F Y+
Sbjct: 249 WVRGVLFHSGGKFILSC---ADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVV 305
Query: 195 SGGEDGLV 202
+G D V
Sbjct: 306 TGSVDQTV 313
Score = 79.0 bits (193), Expect = 3e-17
Identities = 47/214 (21%), Positives = 76/214 (35%), Gaps = 5/214 (2%)
Query: 47 SGHDMTVWSVEACSKG-LALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITY 105
SGH V V + ++ S D T ++W E R GH V F
Sbjct: 14 SGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKL 73
Query: 106 IGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSI 165
+ + S D ++LW +R H V S++ P G ++ S S DK +++W +
Sbjct: 74 LASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVS---ASRDKTIKMWEV 130
Query: 166 TDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVT 225
G V+ F+ H V + + G +AS D V + T + H V
Sbjct: 131 QTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRH-VVE 189
Query: 226 SLVWSVTGETLVTGSLTGTVQFYGWPSASKIGIG 259
+ W+ TG+ + G
Sbjct: 190 CISWAPESSYSSISEATGSETKKSGKPGPFLLSG 223
>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G
protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}
Length = 340
Score = 112 bits (279), Expect = 7e-29
Identities = 34/151 (22%), Positives = 59/151 (39%), Gaps = 5/151 (3%)
Query: 54 WSVEACSKGLALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDK 113
A L ++G+ D +A+LW + + + F GH+ D+ F P TGS D
Sbjct: 189 SLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDA 248
Query: 114 AVRL--WSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASV 171
RL + + + S++FS G+ L +G D +W
Sbjct: 249 TCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAG---YDDFNCNVWDALKADRA 305
Query: 172 RVFSDHVSPVLSIAFSPCGKYLASGGEDGLV 202
V + H + V + + G +A+G D +
Sbjct: 306 GVLAGHDNRVSCLGVTDDGMAVATGSWDSFL 336
Score = 104 bits (259), Expect = 4e-26
Identities = 50/205 (24%), Positives = 80/205 (39%), Gaps = 8/205 (3%)
Query: 47 SGHDMTVWSVEACSKGLALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYI 106
+GH + +T S DTT LW +E F GH DV P
Sbjct: 140 AGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLF 199
Query: 107 GTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRL--WS 164
+G+ D + +LW + +G + F+ H S + +I F P G A TGS D RL
Sbjct: 200 VSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA---TGSDDATCRLFDLR 256
Query: 165 ITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHE-P 223
+ + + S++FS G+ L +G +D + L H+
Sbjct: 257 ADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGV--LAGHDNR 314
Query: 224 VTSLVWSVTGETLVTGSLTGTVQFY 248
V+ L + G + TGS ++ +
Sbjct: 315 VSCLGVTDDGMAVATGSWDSFLKIW 339
Score = 87.9 bits (216), Expect = 4e-20
Identities = 26/132 (19%), Positives = 50/132 (37%), Gaps = 6/132 (4%)
Query: 36 NLQSRYLPYYTSGHDMTVWSVEACSKG-LALTGSRDTTARLWSLEQMYPLRIFVGHKQD- 93
+++ +GH+ + ++ G TGS D T RL+ L L +
Sbjct: 212 DVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIIC 271
Query: 94 -VTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGG 152
+T F + G D +W V + H + V + + G +A+
Sbjct: 272 GITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVAT-- 329
Query: 153 TGSYDKAVRLWS 164
GS+D +++W+
Sbjct: 330 -GSWDSFLKIWN 340
Score = 86.3 bits (212), Expect = 1e-19
Identities = 50/283 (17%), Positives = 95/283 (33%), Gaps = 51/283 (18%)
Query: 23 TVEDVLANLESQKNLQSRYLPYYTSGHDMTVWSVEACSKG-LALTGSRDTTARLWSLEQM 81
T+ + N++ +Q R GH ++++ + L ++ S+D +W
Sbjct: 29 TLSQITNNIDPVGRIQMR-TRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTT 87
Query: 82 YPLRIFVGHKQDVTCARFHPKITYIGTGS------------------------------- 110
+ V + P Y+ G
Sbjct: 88 NKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLS 147
Query: 111 --------------YDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSY 156
D LW I G F+ H V+S++ +P + SG +
Sbjct: 148 CCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSG---AC 204
Query: 157 DKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLV-LTHELTTGRVISR 215
D + +LW + +G + F+ H S + +I F P G A+G +D L +++
Sbjct: 205 DASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTY 264
Query: 216 FHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSASKIGI 258
H +TS+ +S +G L+ G + A + G+
Sbjct: 265 SHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGV 307
Score = 67.5 bits (163), Expect = 3e-13
Identities = 42/241 (17%), Positives = 71/241 (29%), Gaps = 45/241 (18%)
Query: 55 SVEACSKGLALTGSRDTTARLWSLE--QMYPLRIFVGHKQDVTCARFHPKITYIGTGSYD 112
+ K A T + + QM R GH + + + + S D
Sbjct: 17 QIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQD 76
Query: 113 KAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGS----------------- 155
+ +W V S V++ A++P G Y+A GG +
Sbjct: 77 GKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVS 136
Query: 156 -------------------------YDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCG 190
D LW I G F+ H V+S++ +P
Sbjct: 137 RELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDT 196
Query: 191 KYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGW 250
+ SG D ++ G F E + ++ + G TGS T + +
Sbjct: 197 RLFVSGACDASAKLWDVREGMCRQTFTGHES-DINAICFFPNGNAFATGSDDATCRLFDL 255
Query: 251 P 251
Sbjct: 256 R 256
>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 388
Score = 89.5 bits (220), Expect = 1e-20
Identities = 38/163 (23%), Positives = 60/163 (36%), Gaps = 28/163 (17%)
Query: 65 LTGSRDTTARLWSLEQMY-------PLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRL 117
GS D R+W E + GHK V F + +GS D++V+L
Sbjct: 221 AAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKL 280
Query: 118 WSITDGASVRVFSDHVS------------PVLSIAFSPCGKYLASGGTGSYDKAVRLWSI 165
W++ + + S VLS+A + +Y+ SG S D+ V W
Sbjct: 281 WNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSG---SKDRGVLFWDK 337
Query: 166 TDGASVRVFSDHVSPVLSIA------FSPCGKYLASGGEDGLV 202
G + + H + V+S+A P A+G D
Sbjct: 338 KSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKA 380
Score = 85.2 bits (209), Expect = 5e-19
Identities = 52/234 (22%), Positives = 82/234 (35%), Gaps = 31/234 (13%)
Query: 41 YLPYYTSGHDMTVWSVEACSKGLALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFH 100
+ S ++GS D T R+W L T A
Sbjct: 155 IVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSP 214
Query: 101 PKITYIGTGSYDKAVRLWSITDG-------ASVRVFSDHVSPVLSIAFSPCGKYLASGGT 153
YI GS D+AVR+W G + + H V S+ F+ G+ + SG
Sbjct: 215 GDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSG-- 272
Query: 154 GSYDKAVRLWSITDGASVRVFSDHVS------------PVLSIAFSPCGKYLASGGEDGL 201
S D++V+LW++ + + S VLS+A + +Y+ SG +D
Sbjct: 273 -SLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRG 331
Query: 202 VLTHELTTGRVISRFHLQEHE-PVTSLV------WSVTGETLVTGSLTGTVQFY 248
VL + +G + LQ H V S+ TGS + +
Sbjct: 332 VLFWDKKSGNPLLM--LQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIW 383
Score = 77.1 bits (188), Expect = 2e-16
Identities = 55/228 (24%), Positives = 88/228 (38%), Gaps = 22/228 (9%)
Query: 48 GHDMTVWSVEACSKG-LALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYI 106
D+ + SV G TG+ D R+W +E + I GH+QD+ + P +
Sbjct: 119 SSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKL 178
Query: 107 GTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSIT 166
+GS D+ VR+W + G S GKY+A+G S D+AVR+W
Sbjct: 179 VSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAG---SLDRAVRVWDSE 235
Query: 167 DG-------ASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQ 219
G + + H V S+ F+ G+ + SG D V L S
Sbjct: 236 TGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTP 295
Query: 220 EH-----------EPVTSLVWSVTGETLVTGSLTGTVQFYGWPSASKI 256
+ V S+ + E +++GS V F+ S + +
Sbjct: 296 NSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPL 343
Score = 76.0 bits (185), Expect = 6e-16
Identities = 35/138 (25%), Positives = 55/138 (39%), Gaps = 22/138 (15%)
Query: 47 SGHDMTVWSVEACSKG-LALTGSRDTTARLWSLE------------QMYPLRIFVGHKQD 93
+GH +V+SV G ++GS D + +LW+L+ ++GHK
Sbjct: 251 TGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDF 310
Query: 94 VTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIA------FSPCGKY 147
V YI +GS D+ V W G + + H + V+S+A P
Sbjct: 311 VLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNV 370
Query: 148 LASGGTGSYDKAVRLWSI 165
A+ GS D R+W
Sbjct: 371 FAT---GSGDCKARIWKY 385
Score = 71.8 bits (174), Expect = 2e-14
Identities = 54/268 (20%), Positives = 95/268 (35%), Gaps = 68/268 (25%)
Query: 64 ALTGSRDTTARLWSLEQMYPLRI----FVGHKQDVTCARFHPKITYIGTGSYDKAVRLWS 119
AL + L++ + + + H V C +F Y+ TG +K +++
Sbjct: 31 ALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYR 89
Query: 120 ITDGASVRVFSD------------------HVSPVLSIAFSPCGKYLASGGT-------- 153
++DG+ V SD + S+ FSP GK+LA+G
Sbjct: 90 VSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWD 149
Query: 154 -------------------------------GSYDKAVRLWSITDGASVRVFSDHVSPVL 182
GS D+ VR+W + G S
Sbjct: 150 IENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTT 209
Query: 183 SIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEH------EPVTSLVWSVTGETL 236
GKY+A+G D V + TG ++ R + + V S+V++ G+++
Sbjct: 210 VAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSV 269
Query: 237 VTGSLTGTVQFYGWPSASKIGIGVYPRC 264
V+GSL +V+ + +A+ P
Sbjct: 270 VSGSLDRSVKLWNLQNANNKSDSKTPNS 297
Score = 54.4 bits (129), Expect = 8e-09
Identities = 23/144 (15%), Positives = 50/144 (34%), Gaps = 22/144 (15%)
Query: 129 FSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRV----FSDHVSPVLSI 184
++H P+ + + + L++ + V DH S V +
Sbjct: 9 RANHSKPIPPFLLDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCV 68
Query: 185 AFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEH-----------------EPVTSL 227
FS G+YLA+G + + ++ G +++R + S+
Sbjct: 69 KFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSV 127
Query: 228 VWSVTGETLVTGSLTGTVQFYGWP 251
+S G+ L TG+ ++ +
Sbjct: 128 CFSPDGKFLATGAEDRLIRIWDIE 151
Score = 30.2 bits (66), Expect = 0.37
Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 7/42 (16%)
Query: 47 SGHDMTVWSVEACSKG-------LALTGSRDTTARLWSLEQM 81
GH +V SV + + TGS D AR+W +++
Sbjct: 347 QGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI 388
>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein
7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}
Length = 342
Score = 80.6 bits (197), Expect = 1e-17
Identities = 40/213 (18%), Positives = 70/213 (32%), Gaps = 12/213 (5%)
Query: 43 PYYTSGHDMTVWSVEACSKGLALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPK 102
+ + ++G+ D ++W E L GH V +F
Sbjct: 129 CLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGI 188
Query: 103 ITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRL 162
++ +GS D ++R+W + G + + H S + L SG + D V++
Sbjct: 189 --HVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD--NILVSG---NADSTVKI 241
Query: 163 WSITDGASVRVFSDHVSPV-LSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQE- 220
W I G ++ ++ + +DG V +L TG I E
Sbjct: 242 WDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLES 301
Query: 221 ---HEPVTSLVWSVTGETLVTGSLTGTVQFYGW 250
V + S T GS GT +
Sbjct: 302 GGSGGVVWRIRASNTKLVCAVGSRNGTEETKLL 334
Score = 67.1 bits (162), Expect = 4e-13
Identities = 47/240 (19%), Positives = 83/240 (34%), Gaps = 12/240 (5%)
Query: 47 SGHDMTVWSVEACSKGLALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYI 106
GHD V + ++GS D T ++WS LR VGH V ++ I
Sbjct: 13 KGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIIS 72
Query: 107 GTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSIT 166
G+ V + + H S V + +GS D +R+W I
Sbjct: 73 GSTDRTLKVWNAETGE--CIHTLYGHTSTVRCMHLHEKRVV-----SGSRDATLRVWDIE 125
Query: 167 DGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTS 226
G + V HV+ V G+ + SG D +V + T +
Sbjct: 126 TGQCLHVLMGHVAAVRC--VQYDGRRVVSGAYDFMVKVWDPETETCLHTLQ---GHTNRV 180
Query: 227 LVWSVTGETLVTGSLTGTVQFYGWPSASKIGIGVYPRCAAQPVGFEAATLAANSRVRTLR 286
G +V+GSL +++ + + + I + + + L + + T++
Sbjct: 181 YSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVK 240
Score = 59.8 bits (143), Expect = 1e-10
Identities = 45/190 (23%), Positives = 75/190 (39%), Gaps = 9/190 (4%)
Query: 67 GSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASV 126
GSRD T R+W +E L + +GH V C + +G+YD V++W +
Sbjct: 113 GSRDATLRVWDIETGQCLHVLMGHVAAVRC--VQYDGRRVVSGAYDFMVKVWDPETETCL 170
Query: 127 RVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAF 186
H + V S+ F G ++ SG S D ++R+W + G + + H S +
Sbjct: 171 HTLQGHTNRVYSLQFD--GIHVVSG---SLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL 225
Query: 187 SPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQ 246
L SG D V ++ TG+ + ++T S GTV+
Sbjct: 226 KD--NILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVK 283
Query: 247 FYGWPSASKI 256
+ + I
Sbjct: 284 LWDLKTGEFI 293
>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 393
Score = 73.3 bits (178), Expect = 4e-15
Identities = 38/251 (15%), Positives = 71/251 (28%), Gaps = 50/251 (19%)
Query: 48 GHDMTVWSVEACSKGLALTGSRDTTARLWSLEQMYPLRIFV------GHKQDVTC----- 96
HD ++SV AC+ + S D ++W + + HK +
Sbjct: 12 AHDADIFSVSACNSFTV-SCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQ 70
Query: 97 --ARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVL----------SIAFSPC 144
R ++ + T S+ + + IT + +L ++ +
Sbjct: 71 AIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGAS 130
Query: 145 GKYLASG--GTGSYDKAVRLWSITDG------------------ASVRVFSDHVSPVLSI 184
L S +W +V S+
Sbjct: 131 NDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSV 190
Query: 185 AFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQ-----EHEPVTSLVWSVTGETLVTG 239
S G +A+G +G V EL+T R + F Q + S+ +S G L
Sbjct: 191 DISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIA 249
Query: 240 SLTGTVQFYGW 250
+ +
Sbjct: 250 HDSNSFGCITL 260
Score = 58.3 bits (139), Expect = 4e-10
Identities = 15/126 (11%), Positives = 33/126 (26%), Gaps = 10/126 (7%)
Query: 76 WSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSP 135
H V F+ + + +D +R W + + + H
Sbjct: 274 VPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDD 333
Query: 136 V----LSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGK 191
+ +A G LA G + + G + +D + + +
Sbjct: 334 IEIEEDILAVDEHGDSLAEPGV------FDVKFLKKGWRSGMGADLNESLCCVCLDRSIR 387
Query: 192 YLASGG 197
+ G
Sbjct: 388 WFREAG 393
Score = 52.5 bits (124), Expect = 3e-08
Identities = 33/220 (15%), Positives = 70/220 (31%), Gaps = 25/220 (11%)
Query: 46 TSGHDMTVWSVEACSKGLALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITY 105
+ T + + + L+ + + Q T +
Sbjct: 141 ATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQG--TVESPMTPSQFATSVDISER-GL 197
Query: 106 IGTGSYDKAVRLWS------ITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKA 159
I TG + V++ + + S ++ + + S+ FSP G LA +
Sbjct: 198 IATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGC 257
Query: 160 VRLWSI-------------TDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHE 206
+ L+ + H S V+S++F+ G+ L S G DG + +
Sbjct: 258 ITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWD 317
Query: 207 LTTGRVISRFHLQEHE---PVTSLVWSVTGETLVTGSLTG 243
+ T I+ ++ + L G++L +
Sbjct: 318 VKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFD 357
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos
taurus) [TaxId: 9913]}
Length = 371
Score = 73.0 bits (177), Expect = 5e-15
Identities = 12/75 (16%), Positives = 26/75 (34%), Gaps = 5/75 (6%)
Query: 130 SDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDG--ASVRVFSDHVSPVLSIAFS 187
S V P+ A++ +A + V ++ + V +H V + ++
Sbjct: 4 SFLVEPISCHAWNKDRTQIA---ICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWA 60
Query: 188 PCGKYLASGGEDGLV 202
P + + G D
Sbjct: 61 PDSNRIVTCGTDRNA 75
Score = 65.3 bits (157), Expect = 2e-12
Identities = 15/78 (19%), Positives = 29/78 (37%), Gaps = 1/78 (1%)
Query: 175 SDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHE-PVTSLVWSVTG 233
S V P+ A++ +A + V +E + + + L+EH VT + W+
Sbjct: 4 SFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDS 63
Query: 234 ETLVTGSLTGTVQFYGWP 251
+VT +
Sbjct: 64 NRIVTCGTDRNAYVWTLK 81
Score = 51.0 bits (120), Expect = 1e-07
Identities = 9/79 (11%), Positives = 22/79 (27%), Gaps = 4/79 (5%)
Query: 44 YYTSGHDMTVWSVEACSKG-LALTGSRDTTARLWSLE--QMYPLRIFVGHKQDVTCARFH 100
Y++ + + + ++ + + H VT +
Sbjct: 2 YHSFLVE-PISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWA 60
Query: 101 PKITYIGTGSYDKAVRLWS 119
P I T D+ +W+
Sbjct: 61 PDSNRIVTCGTDRNAYVWT 79
Score = 49.1 bits (115), Expect = 3e-07
Identities = 26/213 (12%), Positives = 55/213 (25%), Gaps = 16/213 (7%)
Query: 41 YLPYYTSGHDMTVWSVEACSKGLALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFH 100
L + ++S + T + + V F
Sbjct: 155 LLAAGSCDFKCRIFSAYIKE----VEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFS 210
Query: 101 PKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAV 160
+ + S+D V L +V + P+L++ F +A+G +D
Sbjct: 211 ANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAG----HDCFP 266
Query: 161 RLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTH-ELTTGRVISRFHLQ 219
L++ A F + + D + G + H
Sbjct: 267 VLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLH-- 324
Query: 220 EHEPVTSLVWSVTGET----LVTGSLTGTVQFY 248
V+ + G+ T + G + +
Sbjct: 325 -KNSVSQISVLSGGKAKCSQFCTTGMDGGMSIW 356
Score = 47.5 bits (111), Expect = 1e-06
Identities = 19/137 (13%), Positives = 39/137 (28%), Gaps = 2/137 (1%)
Query: 36 NLQSRYLPYYTSGHDMTVWSVEACSKGLALTGSRDTTARLWSLEQMYPLRIFVGHKQDVT 95
+ + + + + +V ++ + D L++ + F G
Sbjct: 229 DADKKMAVATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPK 288
Query: 96 CARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASG-GTG 154
+ + DK A + S H + V I+ GK S T
Sbjct: 289 QSSQRGLTARERFQNLDKKASSEGSAA-AGAGLDSLHKNSVSQISVLSGGKAKCSQFCTT 347
Query: 155 SYDKAVRLWSITDGASV 171
D + +W + S
Sbjct: 348 GMDGGMSIWDVRSLESA 364
Score = 34.4 bits (77), Expect = 0.019
Identities = 6/46 (13%), Positives = 13/46 (28%)
Query: 216 FHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSASKIGIGVY 261
+H EP++ W+ + V Y + +
Sbjct: 2 YHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHEL 47
>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 337
Score = 71.0 bits (172), Expect = 2e-14
Identities = 24/123 (19%), Positives = 40/123 (32%), Gaps = 4/123 (3%)
Query: 43 PYYTSGHDMTVWSVEACSKGLALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPK 102
++S+ C G L +++ H+ V +F
Sbjct: 217 QLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYC 276
Query: 103 ITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRL 162
+ + D + W GAS+ S VLS S KY+ TGS DK +
Sbjct: 277 GKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIV---TGSGDKKATV 332
Query: 163 WSI 165
+ +
Sbjct: 333 YEV 335
Score = 69.8 bits (169), Expect = 5e-14
Identities = 27/127 (21%), Positives = 41/127 (32%), Gaps = 5/127 (3%)
Query: 76 WSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSP 135
+ + + P ++ G V + + H S
Sbjct: 209 SWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKP-DKYQLHLHESC 267
Query: 136 VLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLAS 195
VLS+ F+ CGK+ S D + W GAS+ S VLS S KY+ +
Sbjct: 268 VLSLKFAYCGKWFVST---GKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVT 323
Query: 196 GGEDGLV 202
G D
Sbjct: 324 GSGDKKA 330
Score = 66.8 bits (161), Expect = 5e-13
Identities = 48/173 (27%), Positives = 67/173 (38%), Gaps = 7/173 (4%)
Query: 76 WSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSP 135
W L +R F GH +C T + TG D VR D S
Sbjct: 168 WDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVR-SWDLREGRQLQQHDFTSQ 226
Query: 136 VLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLAS 195
+ S+ + P G++LA G S + + + H S VLS+ F+ CGK+ S
Sbjct: 227 IFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK----YQLHLHESCVLSLKFAYCGKWFVS 282
Query: 196 GGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFY 248
G+D L+ G I F +E V S SV + +VTGS Y
Sbjct: 283 TGKDNLLNAWRTPYGASI--FQSKESSSVLSCDISVDDKYIVTGSGDKKATVY 333
Score = 63.7 bits (153), Expect = 5e-12
Identities = 17/94 (18%), Positives = 32/94 (34%), Gaps = 10/94 (10%)
Query: 112 DKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGA-- 169
D + + +H V ++ S +++ +GG V++W I+
Sbjct: 31 DALIGPGIPRHARQINTL-NHGEVVCAVTISNPTRHVYTGG----KGCVKVWDISHPGNK 85
Query: 170 ---SVRVFSDHVSPVLSIAFSPCGKYLASGGEDG 200
S + + + S P G L GGE
Sbjct: 86 SPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEAS 119
Score = 56.7 bits (135), Expect = 1e-09
Identities = 16/123 (13%), Positives = 37/123 (30%), Gaps = 6/123 (4%)
Query: 132 HVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGK 191
P S + G+ D + + +H V ++ S +
Sbjct: 8 GSKPAYSFHVTADGQMQPVPFPP--DALIGPGIPRHARQINTL-NHGEVVCAVTISNPTR 64
Query: 192 YLASGGEDGLVL--THELTTGRVISRFHLQEHE-PVTSLVWSVTGETLVTGSLTGTVQFY 248
++ +GG+ + + +S+ + + S G TL+ G T+ +
Sbjct: 65 HVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIW 124
Query: 249 GWP 251
Sbjct: 125 DLA 127
Score = 54.4 bits (129), Expect = 6e-09
Identities = 14/69 (20%), Positives = 23/69 (33%), Gaps = 6/69 (8%)
Query: 89 GHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGA-----SVRVFSDHVSPVLSIAFSP 143
H + V ++ TG V++W I+ S + + + S P
Sbjct: 49 NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLP 107
Query: 144 CGKYLASGG 152
G L GG
Sbjct: 108 DGCTLIVGG 116
Score = 40.2 bits (92), Expect = 3e-04
Identities = 8/81 (9%), Positives = 20/81 (24%), Gaps = 5/81 (6%)
Query: 43 PYYTSGHDMTVWSVEACSKGLALTGSRDTTARLWSLEQMYPLR-----IFVGHKQDVTCA 97
T H V +V + + ++W + + +
Sbjct: 44 QINTLNHGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSC 103
Query: 98 RFHPKITYIGTGSYDKAVRLW 118
+ P + G + +W
Sbjct: 104 KLLPDGCTLIVGGEASTLSIW 124
Score = 35.9 bits (81), Expect = 0.005
Identities = 30/224 (13%), Positives = 55/224 (24%), Gaps = 3/224 (1%)
Query: 33 SQKNLQSRYLPYYTSGHDMTVWSVEACSKGLALTGSRDTTARLWSLEQMYPLRIFVGHKQ 92
S +S D + S + G L + + RI
Sbjct: 80 SHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTS 139
Query: 93 DVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGG 152
+ ++ D + + +
Sbjct: 140 SAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLW 199
Query: 153 TGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRV 212
TG D VR D S + S+ + P G++LA G E V +
Sbjct: 200 TGGLDNTVR-SWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK 258
Query: 213 ISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSASKI 256
+ SL ++ G+ V+ + + P + I
Sbjct: 259 YQLHLHESCVL--SLKFAYCGKWFVSTGKDNLLNAWRTPYGASI 300
>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon
Thermoplasma acidophilum [TaxId: 2303]}
Length = 360
Score = 69.5 bits (168), Expect = 8e-14
Identities = 22/199 (11%), Positives = 42/199 (21%), Gaps = 19/199 (9%)
Query: 68 SRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSIT------ 121
++ +E F + SY
Sbjct: 156 YVMQAIHVYDMEGRKI-FAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSF 214
Query: 122 -DGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLW----SITDGASVRVFSD 176
+ V P +G D R D +
Sbjct: 215 EVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLES 274
Query: 177 HVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETL 236
+ Y E G++L +++ T +V +T L S +T+
Sbjct: 275 SILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEV-----KNNLTDLRLSADRKTV 329
Query: 237 VTGSLTGTVQFYGWPSASK 255
+ G + +P
Sbjct: 330 MVRKDDGKIYT--FPLEKP 346
Score = 66.4 bits (160), Expect = 7e-13
Identities = 15/189 (7%), Positives = 37/189 (19%), Gaps = 21/189 (11%)
Query: 36 NLQSRYLPYYTSGHDMTVWSVEACSKGLALTGSRDTTARLWSLEQMYP-------LRIFV 88
+++ R + T+ + S + + +
Sbjct: 165 DMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIP 224
Query: 89 GHKQDVTCARFHPKITYIGTGSYDKAVRLW-------SITDGASVRVFSDHVSPVLSIAF 141
+ P+ G YD D + +
Sbjct: 225 LIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVH 284
Query: 142 SPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGL 201
Y + + + + + + S K + +DG
Sbjct: 285 GEFAAYYQGA---PEKGVLLKYDVKTRKVTE----VKNNLTDLRLSADRKTVMVRKDDGK 337
Query: 202 VLTHELTTG 210
+ T L
Sbjct: 338 IYTFPLEKP 346
Score = 62.2 bits (149), Expect = 2e-11
Identities = 7/148 (4%), Positives = 28/148 (18%), Gaps = 15/148 (10%)
Query: 43 PYYTSGHDMTVWSVEACSKGLALTGSRDTTARLWSLEQMYPLRI--------FVGHKQDV 94
P+ + + + + ++ +
Sbjct: 220 PFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIY 279
Query: 95 TCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTG 154
+ Y + + + + + + S K +
Sbjct: 280 SVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTE----VKNNLTDLRLSADRKTVMVR--- 332
Query: 155 SYDKAVRLWSITDGASVRVFSDHVSPVL 182
D + + + R P++
Sbjct: 333 KDDGKIYTFPLEKPEDERTVETDKRPLV 360
Score = 42.5 bits (98), Expect = 4e-05
Identities = 12/101 (11%), Positives = 29/101 (28%), Gaps = 11/101 (10%)
Query: 133 VSPVLSIAFSPC-GKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGK 191
+ + FSP G +A G + ++ ++V + + K
Sbjct: 2 IPSKFAEDFSPLDGDLIAFVSRGQ----AFIQDVSGTYVLKV--PEPLRIRYVRRGGDTK 55
Query: 192 YLASGGEDG--LVLTHELTTGRVISRFHLQEHEPVTSLVWS 230
G + ++ TG+ + V ++
Sbjct: 56 VAFIHGTREGDFLGIYDYRTGKA--EKFEENLGNVFAMGVD 94
Score = 40.2 bits (92), Expect = 2e-04
Identities = 11/89 (12%), Positives = 28/89 (31%), Gaps = 5/89 (5%)
Query: 104 TYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLW 163
I S + + ++ ++V + + K GT + ++
Sbjct: 16 DLIAFVSRGQ-AFIQDVSGTYVLKV--PEPLRIRYVRRGGDTKVAFIHGTRE-GDFLGIY 71
Query: 164 SITDGASVRVFSDHVSPVLSIAFSPCGKY 192
G F +++ V ++ GK+
Sbjct: 72 DYRTG-KAEKFEENLGNVFAMGVDRNGKF 99
Score = 34.1 bits (76), Expect = 0.025
Identities = 19/195 (9%), Positives = 47/195 (24%), Gaps = 17/195 (8%)
Query: 66 TGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYD--KAVRLWSITDG 123
SR A + + Y L++ + R + ++ G
Sbjct: 20 FVSRGQ-AFIQDVSGTYVLKV--PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTG 76
Query: 124 ASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLS 183
F +++ V ++ GK+ + + + G + + +
Sbjct: 77 -KAEKFEENLGNVFAMGVDRNGKF---AVVANDRFEIMTVDLETGKPTVIERSREAMITD 132
Query: 184 IAFSPCGKYLASGGEDGLVLTHELTTGRV--------ISRFHLQEHEPVTSLVWSVTGET 235
S +++A G T + E+ + + +
Sbjct: 133 FTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKN 192
Query: 236 LVTGSLTGTVQFYGW 250
L S
Sbjct: 193 LYYLSYRSLDPSPDR 207
>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode
(Caenorhabditis elegans) [TaxId: 6239]}
Length = 311
Score = 66.5 bits (160), Expect = 5e-13
Identities = 15/86 (17%), Positives = 28/86 (32%), Gaps = 4/86 (4%)
Query: 136 VLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLAS 195
+ + +P G + +V + ++++H SP G Y AS
Sbjct: 20 AVVLGNTPAGDKIQYCN----GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCAS 75
Query: 196 GGEDGLVLTHELTTGRVISRFHLQEH 221
G G V + T I + +
Sbjct: 76 GDVHGNVRIWDTTQTTHILKTTIPVF 101
Score = 53.0 bits (125), Expect = 1e-08
Identities = 17/101 (16%), Positives = 28/101 (27%), Gaps = 6/101 (5%)
Query: 94 VTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGT 153
P I + +V + ++++H SP G Y +
Sbjct: 20 AVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYC---AS 75
Query: 154 GSYDKAVRLWSITDG--ASVRVFSDHVSPVLSIAFSPCGKY 192
G VR+W T PV I++ K
Sbjct: 76 GDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKR 116
Score = 51.1 bits (120), Expect = 8e-08
Identities = 18/98 (18%), Positives = 29/98 (29%), Gaps = 2/98 (2%)
Query: 52 TVWSVEACSKGLALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSY 111
T + G + T+ + + I+ H T A+ P Y +G
Sbjct: 19 TAVVLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDV 78
Query: 112 DKAVRLWSITDG--ASVRVFSDHVSPVLSIAFSPCGKY 147
VR+W T PV I++ K
Sbjct: 79 HGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKR 116
Score = 49.5 bits (116), Expect = 2e-07
Identities = 13/89 (14%), Positives = 26/89 (29%), Gaps = 4/89 (4%)
Query: 76 WSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVS- 134
+ V H V + P T I + S DK +++W++ +
Sbjct: 223 KTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRI 282
Query: 135 PVLSIAFSPCGKYLASGGTGSYDKAVRLW 163
+ + L S S + +
Sbjct: 283 EDQQLGIIWTKQALVS---ISANGFINFV 308
Score = 49.5 bits (116), Expect = 2e-07
Identities = 24/135 (17%), Positives = 46/135 (34%), Gaps = 11/135 (8%)
Query: 76 WSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRV------- 128
+ F H + V R++P + + D + L++ DG V
Sbjct: 174 FEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLK 233
Query: 129 FSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVS-PVLSIAFS 187
H V + +SP G +AS S DK +++W++ + +
Sbjct: 234 NVAHSGSVFGLTWSPDGTKIASA---SADKTIKIWNVATLKVEKTIPVGTRIEDQQLGII 290
Query: 188 PCGKYLASGGEDGLV 202
+ L S +G +
Sbjct: 291 WTKQALVSISANGFI 305
Score = 45.7 bits (106), Expect = 4e-06
Identities = 15/64 (23%), Positives = 24/64 (37%)
Query: 185 AFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGT 244
+SP G +AS D + + T +V + L T + LV+ S G
Sbjct: 245 TWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGF 304
Query: 245 VQFY 248
+ F
Sbjct: 305 INFV 308
Score = 44.9 bits (104), Expect = 7e-06
Identities = 10/115 (8%), Positives = 29/115 (25%), Gaps = 2/115 (1%)
Query: 5 HLNHGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYYTSGHDMTVWSVEACSKGLA 64
+ D F V + + L + + +A
Sbjct: 195 VRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIA 254
Query: 65 LTGSRDTTARLWSLEQMYPLRIFVGHKQ-DVTCARFHPKITYIGTGSYDKAVRLW 118
+ S D T ++W++ + + + + + + S + +
Sbjct: 255 -SASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFV 308
Score = 43.0 bits (99), Expect = 3e-05
Identities = 12/71 (16%), Positives = 24/71 (33%), Gaps = 4/71 (5%)
Query: 181 VLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHE-PVTSLVWSVTGETLVTG 239
+ + +P G + V T + + + EH T S +G +G
Sbjct: 20 AVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIY--TEHSHQTTVAKTSPSGYYCASG 76
Query: 240 SLTGTVQFYGW 250
+ G V+ +
Sbjct: 77 DVHGNVRIWDT 87
>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 293
Score = 65.3 bits (157), Expect = 1e-12
Identities = 34/144 (23%), Positives = 58/144 (40%), Gaps = 18/144 (12%)
Query: 68 SRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVR 127
S D T ++W+ +R GHK+ + C ++ + + +GS D +RLW I GA +R
Sbjct: 155 SGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDR--LVVSGSSDNTIRLWDIECGACLR 212
Query: 128 VFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGAS---------VRVFSDHV 178
V H L K + SG +YD +++W + +R +H
Sbjct: 213 VLEGH--EELVRCIRFDNKRIVSG---AYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHS 267
Query: 179 SPVLSIAFSPCGKYLASGGEDGLV 202
V + F + S D +
Sbjct: 268 GRVFRLQFD--EFQIVSSSHDDTI 289
Score = 59.5 bits (142), Expect = 1e-10
Identities = 28/137 (20%), Positives = 53/137 (38%), Gaps = 17/137 (12%)
Query: 36 NLQSRYLPYYTSGHDMTVWSVEACSKGLALTGSRDTTARLWSLEQMYPLRIFVGHKQDVT 95
N + +GH + ++ + + +GS D T RLW +E LR+ GH++
Sbjct: 164 NTSTCEFVRTLNGHKRGIACLQYRDRLVV-SGSSDNTIRLWDIECGACLRVLEGHEE--L 220
Query: 96 CARFHPKITYIGTGSYDKAVRLWSITDGAS---------VRVFSDHVSPVLSIAFSPCGK 146
I +G+YD +++W + +R +H V + F
Sbjct: 221 VRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD--EF 278
Query: 147 YLASGGTGSYDKAVRLW 163
+ S S+D + +W
Sbjct: 279 QIVSS---SHDDTILIW 292
Score = 57.6 bits (137), Expect = 4e-10
Identities = 36/186 (19%), Positives = 63/186 (33%), Gaps = 18/186 (9%)
Query: 72 TARLWSLEQMYPLRIFVGHKQ-DVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFS 130
+ +W + + + YI + S D+ +++W+ + VR +
Sbjct: 116 SIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLN 175
Query: 131 DHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCG 190
H + + + +GS D +RLW I GA +RV H L
Sbjct: 176 GHKRGIACLQYRDRLVV-----SGSSDNTIRLWDIECGACLRVLEGH--EELVRCIRFDN 228
Query: 191 KYLASGGEDGLVLTHELTTGRVISRFH-------LQEHE-PVTSLVWSVTGETLVTGSLT 242
K + SG DG + +L L EH V L + +V+ S
Sbjct: 229 KRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD--EFQIVSSSHD 286
Query: 243 GTVQFY 248
T+ +
Sbjct: 287 DTILIW 292
Score = 57.6 bits (137), Expect = 5e-10
Identities = 41/272 (15%), Positives = 84/272 (30%), Gaps = 52/272 (19%)
Query: 47 SGHDMTVWSVEACSKGLALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYI 106
S V+ ++ + + +G RD T ++W + RI GH V C ++ ++
Sbjct: 12 SETSKGVYCLQYDDQKIV-SGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIIT 70
Query: 107 GTGSYD--------------------------------------KAVRLWS---ITDGAS 125
G+ +++ +W TD
Sbjct: 71 GSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITL 130
Query: 126 VRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIA 185
RV H + V + F ASG D+ +++W+ + VR + H + +
Sbjct: 131 RRVLVGHRAAVNVVDFDDKYIVSASG-----DRTIKVWNTSTCEFVRTLNGHKRGIACLQ 185
Query: 186 FSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTV 245
+ + SG D + ++ G + E + +V+G+ G +
Sbjct: 186 YRDR--LVVSGSSDNTIRLWDIECGACLRVLEGHEELVRC---IRFDNKRIVSGAYDGKI 240
Query: 246 QFYGWPSASKIGIGVYPRCAAQPVGFEAATLA 277
+ + +A C V
Sbjct: 241 KVWDLVAALDPRAPAGTLCLRTLVEHSGRVFR 272
Score = 48.7 bits (114), Expect = 4e-07
Identities = 10/64 (15%), Positives = 24/64 (37%), Gaps = 2/64 (3%)
Query: 81 MYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIA 140
+ + + V C ++ + I +G D +++W R+ + H VL +
Sbjct: 5 LQRIHCRSETSKGVYCLQYDDQ--KIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQ 62
Query: 141 FSPC 144
+
Sbjct: 63 YDER 66
>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 355
Score = 62.2 bits (149), Expect = 2e-11
Identities = 20/129 (15%), Positives = 46/129 (35%), Gaps = 4/129 (3%)
Query: 128 VFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFS 187
H++ V++ Y+ TG+ DK +R++ + + S H V ++ ++
Sbjct: 7 TLRGHMTSVIT-CLQFEDNYVI---TGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYA 62
Query: 188 PCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQF 247
G ++ + + + +V + +VTGS T+
Sbjct: 63 HGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHV 122
Query: 248 YGWPSASKI 256
+ P S +
Sbjct: 123 WKLPKESSV 131
Score = 59.5 bits (142), Expect = 1e-10
Identities = 19/143 (13%), Positives = 37/143 (25%), Gaps = 2/143 (1%)
Query: 47 SGHDMTVWSVEACSKGLALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYI 106
GH +V + +TG+ D R++ L GH V ++ +
Sbjct: 9 RGHMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILV 68
Query: 107 GTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSIT 166
+ + + + TGS D + +W +
Sbjct: 69 SGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIV--TGSRDNTLHVWKLP 126
Query: 167 DGASVRVFSDHVSPVLSIAFSPC 189
+SV + L
Sbjct: 127 KESSVPDHGEEHDYPLVFHTPEE 149
Score = 43.0 bits (99), Expect = 3e-05
Identities = 34/202 (16%), Positives = 71/202 (35%), Gaps = 9/202 (4%)
Query: 49 HDMTVWSVEACSKGLALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGT 108
H +V +V + ++GS D T +W + QM L I GH + + + +
Sbjct: 160 HMASVRTVSGHGN-IVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCIS 218
Query: 109 GSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDG 168
S D +R+W + +G + H + V + S A+ +S
Sbjct: 219 ASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRK-- 276
Query: 169 ASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLV 228
FS H + + +I + G + + L +G+++ L++ + + S+
Sbjct: 277 -----FSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVN 331
Query: 229 WSVTGETLVTGSLTGTVQFYGW 250
+ + G
Sbjct: 332 FK-GKTLVAAVEKDGQSFLEIL 352
Score = 36.0 bits (81), Expect = 0.005
Identities = 27/111 (24%), Positives = 47/111 (42%), Gaps = 2/111 (1%)
Query: 36 NLQSRYLPYYTSGHDMTVWSVEACSKGLALTGSRDTTARLWSLEQMYPLRIFVGHK--QD 93
+ ++ SGHD VW+++ G+ ++GS D T R+W +++ +F GH
Sbjct: 39 DSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVR 98
Query: 94 VTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPC 144
+ I YI TGS D + +W + +SV + L
Sbjct: 99 CLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEE 149
Score = 32.6 bits (72), Expect = 0.067
Identities = 13/50 (26%), Positives = 19/50 (38%), Gaps = 5/50 (10%)
Query: 30 NLESQKNLQSRYLPYYTSGHDMTVWSVEACSKGLALTGSRDTTARLWSLE 79
NL S K + + L +WSV K L +D + L L+
Sbjct: 309 NLRSGKLVHANIL-----KDADQIWSVNFKGKTLVAAVEKDGQSFLEILD 353
>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 342
Score = 61.4 bits (147), Expect = 3e-11
Identities = 12/86 (13%), Positives = 28/86 (32%), Gaps = 3/86 (3%)
Query: 81 MYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGA---SVRVFSDHVSPVL 137
M ++I K ++ + P + + S+D ++ ++ A + + P+L
Sbjct: 1 MQIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLL 60
Query: 138 SIAFSPCGKYLASGGTGSYDKAVRLW 163
F GT +
Sbjct: 61 CCNFIDNTDLQIYVGTVQGEILKVDL 86
Score = 61.0 bits (146), Expect = 4e-11
Identities = 11/102 (10%), Positives = 31/102 (30%), Gaps = 4/102 (3%)
Query: 66 TGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGAS 125
G +++ ++ V F P+ ++ T D + W++
Sbjct: 226 QGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKK 285
Query: 126 VRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITD 167
++ F+ + + + L + D + + D
Sbjct: 286 IKNFAKF-NEDSVVKIACSDNILCL---ATSDDTFKTNAAID 323
Score = 60.6 bits (145), Expect = 7e-11
Identities = 11/75 (14%), Positives = 22/75 (29%), Gaps = 6/75 (8%)
Query: 126 VRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGA---SVRVFSDHVSPVL 182
V++ + I P L S+D ++ ++ A + + P+L
Sbjct: 4 VQIEQAPKDYISDIKIIPSKSLLLIT---SWDGSLTVYKFDIQAKNVDLLQSLRYKHPLL 60
Query: 183 SIAFSPCGKYLASGG 197
F G
Sbjct: 61 CCNFIDNTDLQIYVG 75
Score = 47.5 bits (111), Expect = 1e-06
Identities = 7/69 (10%), Positives = 19/69 (27%), Gaps = 2/69 (2%)
Query: 171 VRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRF-HLQEHE-PVTSLV 228
V++ + I P L DG + ++ ++ P+
Sbjct: 4 VQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCN 63
Query: 229 WSVTGETLV 237
+ + +
Sbjct: 64 FIDNTDLQI 72
Score = 47.5 bits (111), Expect = 1e-06
Identities = 29/199 (14%), Positives = 51/199 (25%), Gaps = 30/199 (15%)
Query: 76 WSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSY------DKAVRLWSITDGASVRVF 129
I V + + T S + V+ + +
Sbjct: 127 IDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGT 186
Query: 130 SDHVSP----VLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFS---------- 175
+ + A S D V + D S
Sbjct: 187 IEESGLKYQIRDVALLPKEQEGYACS---SIDGRVAVEFFDDQGDDYNSSKRFAFRCHRL 243
Query: 176 -----DHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWS 230
+ PV SI FSP K+L + G DG++ L T + I F + + + +
Sbjct: 244 NLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFA--KFNEDSVVKIA 301
Query: 231 VTGETLVTGSLTGTVQFYG 249
+ L + T +
Sbjct: 302 CSDNILCLATSDDTFKTNA 320
Score = 44.5 bits (103), Expect = 1e-05
Identities = 10/77 (12%), Positives = 23/77 (29%), Gaps = 5/77 (6%)
Query: 47 SGHDMTVWSVEACSKG-LALTGSRDTTARLWSLE---QMYPLRIFVGHKQDVTCARFHP- 101
+ ++ L L S D + ++ + + L + +K + C F
Sbjct: 8 QAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDN 67
Query: 102 KITYIGTGSYDKAVRLW 118
I G+ +
Sbjct: 68 TDLQIYVGTVQGEILKV 84
Score = 32.1 bits (71), Expect = 0.095
Identities = 6/41 (14%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Query: 218 LQEHE-PVTSLVWSVTGETLVTGSLTGTVQFYGWPSASKIG 257
Q + ++ + + L+ S G++ Y + +K
Sbjct: 7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNV 47
>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain
{Pseudomonas putida [TaxId: 303]}
Length = 346
Score = 60.5 bits (145), Expect = 6e-11
Identities = 26/179 (14%), Positives = 46/179 (25%), Gaps = 9/179 (5%)
Query: 44 YYTSGHDMTVWSVEACSKGLALTGSRDTTARLWSLEQMYPLRIFVG---HKQDVTCARFH 100
Y +G D+ V+ +AL + + +Y T ARF
Sbjct: 158 LYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFK 217
Query: 101 PKITYIGTGSYDKAVRLWSI-TDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKA 159
T + T + F+D + SP G
Sbjct: 218 DDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNR---- 273
Query: 160 VRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHL 218
+ + + ++ + +AF G L GG + T + L
Sbjct: 274 LAKYDLKQRKLIKAA-NLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKL 331
Score = 49.0 bits (115), Expect = 3e-07
Identities = 14/163 (8%), Positives = 41/163 (25%), Gaps = 12/163 (7%)
Query: 99 FHPKITYIGTGSYDKAVRLWSITDGASVRVFS-DHVSPVLSIAFSPCGKYLASGGTGSYD 157
Y+ +Y + + + + + +P + ++
Sbjct: 4 LKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYV--LNNHY 61
Query: 158 KAVRLWSITDGASVRVF------SDHVSPVLSIAFSPCGKYLASGGED-GLVLTHELTTG 210
+ + + + + S A SP GK + + + H +
Sbjct: 62 GDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKP 121
Query: 211 RVISRFHLQEHEPVTSL--VWSVTGETLVTGSLTGTVQFYGWP 251
+ F + + L+ + G++ G
Sbjct: 122 PRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPD 164
Score = 42.0 bits (97), Expect = 7e-05
Identities = 11/109 (10%), Positives = 28/109 (25%), Gaps = 10/109 (9%)
Query: 139 IAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFS-DHVSPVLSIAFSPCGKYL-ASG 196
A +Y+ +Y + + + + + +P +
Sbjct: 2 PALKAGHEYMI---VTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLN 58
Query: 197 GEDGLVLTHELTTGRVISRFHLQEH-----EPVTSLVWSVTGETLVTGS 240
G + +L T + +L + S S G+ +
Sbjct: 59 NHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATV 107
Score = 41.3 bits (95), Expect = 1e-04
Identities = 6/66 (9%), Positives = 19/66 (28%), Gaps = 1/66 (1%)
Query: 184 IAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETL-VTGSLT 242
A +Y+ + ++ + V + + + + + T V +
Sbjct: 2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHY 61
Query: 243 GTVQFY 248
G +
Sbjct: 62 GDIYGI 67
Score = 35.5 bits (80), Expect = 0.008
Identities = 8/88 (9%), Positives = 21/88 (23%), Gaps = 1/88 (1%)
Query: 49 HDMTVWSVEACSKGLALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGT 108
++ K + L+Q ++ C F K +
Sbjct: 250 LTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIK-AANLDHTYYCVAFDKKGDKLYL 308
Query: 109 GSYDKAVRLWSITDGASVRVFSDHVSPV 136
G + +++ V+ +
Sbjct: 309 GGTFNDLAVFNPDTLEKVKNIKLPGGDM 336
>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode
(Caenorhabditis elegans) [TaxId: 6239]}
Length = 299
Score = 60.0 bits (143), Expect = 8e-11
Identities = 23/100 (23%), Positives = 40/100 (40%), Gaps = 4/100 (4%)
Query: 123 GASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSD-HVSPV 181
G+ +V H + +++ S GK L S + + W I+ G S RVF D H + +
Sbjct: 2 GSIDQVRYGHNKAITALSSSADGKTLFS---ADAEGHINSWDISTGISNRVFPDVHATMI 58
Query: 182 LSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEH 221
I + G +D L + +G S+ +
Sbjct: 59 TGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKL 98
Score = 56.5 bits (134), Expect = 1e-09
Identities = 13/62 (20%), Positives = 25/62 (40%), Gaps = 1/62 (1%)
Query: 84 LRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSD-HVSPVLSIAFS 142
++ GH + +T + + + + W I+ G S RVF D H + + I +
Sbjct: 5 DQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTT 64
Query: 143 PC 144
Sbjct: 65 SK 66
Score = 53.1 bits (125), Expect = 2e-08
Identities = 13/62 (20%), Positives = 27/62 (43%)
Query: 168 GASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSL 227
G+ +V H + +++ S GK L S +G + + +++TG F +T +
Sbjct: 2 GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGI 61
Query: 228 VW 229
Sbjct: 62 KT 63
Score = 51.9 bits (122), Expect = 4e-08
Identities = 14/93 (15%), Positives = 33/93 (35%), Gaps = 5/93 (5%)
Query: 76 WSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFS--DHV 133
+ ++ + H V C + P + TGS D +V +W++ + + H
Sbjct: 209 ANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHA 268
Query: 134 SPVLSIAFSPCGKYLASGGTGSYDKAVRLWSIT 166
++ + S D ++ W++
Sbjct: 269 MSSVNSVIWLNETTIVSA---GQDSNIKFWNVP 298
Score = 49.6 bits (116), Expect = 2e-07
Identities = 21/197 (10%), Positives = 57/197 (28%), Gaps = 2/197 (1%)
Query: 8 HGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYYTSGHDMTVWSVEACSKGLALTG 67
+ + + + V A + L ++ + ++ + +A+ G
Sbjct: 96 NKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGG 155
Query: 68 SRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVR 127
+ H ++T F ++ + V +S+ + +
Sbjct: 156 QDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELA 215
Query: 128 VFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRV--FSDHVSPVLSIA 185
+ +A TGS D +V +W++ + + H ++
Sbjct: 216 HTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSV 275
Query: 186 FSPCGKYLASGGEDGLV 202
+ S G+D +
Sbjct: 276 IWLNETTIVSAGQDSNI 292
Score = 45.4 bits (105), Expect = 4e-06
Identities = 13/81 (16%), Positives = 27/81 (33%), Gaps = 2/81 (2%)
Query: 43 PYYTSGHDMTVWSVEACSKGLALTGSRDTTARLWSLE--QMYPLRIFVGHKQDVTCARFH 100
+T + TGS D + +W++ +P+ I H +
Sbjct: 218 NSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIW 277
Query: 101 PKITYIGTGSYDKAVRLWSIT 121
T I + D ++ W++
Sbjct: 278 LNETTIVSAGQDSNIKFWNVP 298
Score = 43.4 bits (100), Expect = 2e-05
Identities = 11/78 (14%), Positives = 25/78 (32%), Gaps = 2/78 (2%)
Query: 48 GHDMTVWSVEACSKG-LALTGSRDTTARLWSLEQMYPLRIFV-GHKQDVTCARFHPKITY 105
GH+ + ++ + + G + + W + R+F H +T + K
Sbjct: 10 GHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDL 69
Query: 106 IGTGSYDKAVRLWSITDG 123
D + + G
Sbjct: 70 FTVSWDDHLKVVPAGGSG 87
Score = 35.3 bits (79), Expect = 0.007
Identities = 11/62 (17%), Positives = 21/62 (33%), Gaps = 1/62 (1%)
Query: 188 PCGKYLASGGEDGLVLTHELTTGRVISRFHLQEH-EPVTSLVWSVTGETLVTGSLTGTVQ 246
P LA+G D V+ + H + V + T+V+ ++
Sbjct: 234 PDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIK 293
Query: 247 FY 248
F+
Sbjct: 294 FW 295
Score = 30.7 bits (67), Expect = 0.26
Identities = 8/32 (25%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 218 LQEHE-PVTSLVWSVTGETLVTGSLTGTVQFY 248
H +T+L S G+TL + G + +
Sbjct: 8 RYGHNKAITALSSSADGKTLFSADAEGHINSW 39
Score = 30.0 bits (65), Expect = 0.36
Identities = 5/44 (11%), Positives = 17/44 (38%)
Query: 35 KNLQSRYLPYYTSGHDMTVWSVEACSKGLALTGSRDTTARLWSL 78
+ + +V SV ++ ++ +D+ + W++
Sbjct: 254 NKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNV 297
>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain
{Paracoccus denitrificans [TaxId: 266]}
Length = 337
Score = 59.0 bits (141), Expect = 2e-10
Identities = 24/189 (12%), Positives = 44/189 (23%), Gaps = 9/189 (4%)
Query: 45 YTSGHDMTVWSVEACSKGLALTGSRDTTARLWSLEQMYPLRIFVG-HKQDVTCARFHPKI 103
Y G D+ V EA + + + I
Sbjct: 150 YGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDI 209
Query: 104 TYIGTGSYDKAVRLWSITDGASVRV-FSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRL 162
+Y + + G S A +P +
Sbjct: 210 DPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFG-----AYNVLES 264
Query: 163 WSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHE 222
+ + AS++ S+ S G + GG G + ++ T + L +
Sbjct: 265 FDLEKNASIKRV-PLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLPGNA 323
Query: 223 PVTSLVWSV 231
SL
Sbjct: 324 S-MSLASVR 331
Score = 50.2 bits (118), Expect = 1e-07
Identities = 17/120 (14%), Positives = 36/120 (30%), Gaps = 9/120 (7%)
Query: 105 YIGTGSYDKAVRLWSITDGASVRVF--SDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRL 162
YI + + + A +V +D + +P G+ + T + +++
Sbjct: 3 YILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYA--TVNKSESLVK 60
Query: 163 WSITDGASVRVFSDH-----VSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFH 217
+ G ++ V + A SP GK LA + +
Sbjct: 61 IDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALY 120
>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 287
Score = 53.4 bits (126), Expect = 1e-08
Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 9/65 (13%)
Query: 83 PLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFS 142
L+ GH + +T +P + +GSYD + WS + DH + ++S+ S
Sbjct: 5 VLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSM-----HQDHSNLIVSLDNS 55
Query: 143 PCGKY 147
+Y
Sbjct: 56 KAQEY 60
Score = 53.0 bits (125), Expect = 1e-08
Identities = 9/91 (9%), Positives = 30/91 (32%), Gaps = 5/91 (5%)
Query: 76 WSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSI-TDGASVRVFSDHVS 134
+ + + + + TGS D + ++S+ ++ + H
Sbjct: 200 RWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKD 259
Query: 135 PVLSIAFSPCGKYLASGGTGSYDKAVRLWSI 165
V ++ + + + D ++ W++
Sbjct: 260 GVNNLLWETPSTLV----SSGADACIKRWNV 286
Score = 51.5 bits (121), Expect = 5e-08
Identities = 14/79 (17%), Positives = 32/79 (40%), Gaps = 2/79 (2%)
Query: 43 PYYTSGHDMTVWSVEACSKGLALTGSRDTTARLWSLEQ-MYPLRIFVGHKQDVTCARFHP 101
+ + E + L TGS DT ++S+++ M ++ HK V +
Sbjct: 209 NAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWET 268
Query: 102 KITYIGTGSYDKAVRLWSI 120
+ + + D ++ W++
Sbjct: 269 P-STLVSSGADACIKRWNV 286
Score = 48.0 bits (112), Expect = 6e-07
Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 12/67 (17%)
Query: 126 VRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIA 185
++ S H + ++ +P L SG SYD + WS + DH + ++S+
Sbjct: 6 LKTISGHNKGITALTVNP----LISG---SYDGRIMEWSSSSM-----HQDHSNLIVSLD 53
Query: 186 FSPCGKY 192
S +Y
Sbjct: 54 NSKAQEY 60
Score = 37.6 bits (85), Expect = 0.001
Identities = 13/61 (21%), Positives = 25/61 (40%), Gaps = 12/61 (19%)
Query: 171 VRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHE-PVTSLVW 229
++ S H + ++ +P L SG DG ++ ++ Q+H + SL
Sbjct: 6 LKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSM-------HQDHSNLIVSLDN 54
Query: 230 S 230
S
Sbjct: 55 S 55
Score = 35.3 bits (79), Expect = 0.008
Identities = 11/60 (18%), Positives = 19/60 (31%), Gaps = 8/60 (13%)
Query: 47 SGHDMTVWSVEACSKGLALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYI 106
SGH+ + ++ ++GS D WS M+ H + Y
Sbjct: 10 SGHNKGITALTVNP---LISGSYDGRIMEWSSSSMHQ-----DHSNLIVSLDNSKAQEYS 61
Score = 33.8 bits (75), Expect = 0.022
Identities = 26/214 (12%), Positives = 55/214 (25%), Gaps = 10/214 (4%)
Query: 43 PYYTSGHDMTVWSVEACSKGLALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPK 102
A + G + D L + V +
Sbjct: 73 GITKHEFGSQPKVASANNDGFTAVLTNDDD-LLILQSFTGDIIKSVRLNSPGSAVSLSQN 131
Query: 103 ITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRL 162
+G + S + + + I+ SP Y+A+G L
Sbjct: 132 YVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDL 191
Query: 163 WSITD--------GASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVIS 214
S + + S + + +A+G D + + + I
Sbjct: 192 QSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKII 251
Query: 215 RFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFY 248
+ + V +L+W TLV+ ++ +
Sbjct: 252 KALNAHKDGVNNLLWETPS-TLVSSGADACIKRW 284
>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 325
Score = 53.4 bits (126), Expect = 1e-08
Identities = 26/129 (20%), Positives = 42/129 (32%), Gaps = 14/129 (10%)
Query: 134 SPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDG--ASVRVFSDHVS-PVLSIAFSPC- 189
+ +++ P +A S VR D V F+ H S V ++ FSP
Sbjct: 18 NFTTHLSYDPTTNAIAYPCGKS--AFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIK 75
Query: 190 -GKYLASGGEDGLVLTHELTTGRVISRFHLQEHE-------PVTSLVWSVTGETLVTGSL 241
+YL SG E G V+ T + + + P++ + W G L
Sbjct: 76 GSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGE 135
Query: 242 TGTVQFYGW 250
Sbjct: 136 GRDNFGVFI 144
Score = 48.4 bits (113), Expect = 6e-07
Identities = 27/115 (23%), Positives = 37/115 (32%), Gaps = 17/115 (14%)
Query: 94 VTCARFHPKITYIGTGSYDKA-VRLWSITDG--ASVRVFSDHVS-PVLSIAFSPC--GKY 147
T + P I A VR D V F+ H S V ++ FSP +Y
Sbjct: 20 TTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQY 79
Query: 148 LASGGTGSYDKAVRLWSITDGASV--------RVFSDHVSPVLSIAFSPCGKYLA 194
L S G V +W T F P+ I++ G+ L
Sbjct: 80 LCS---GDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLC 131
Score = 46.4 bits (108), Expect = 2e-06
Identities = 14/93 (15%), Positives = 28/93 (30%), Gaps = 6/93 (6%)
Query: 76 WSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSP 135
S E + + Q A T D +R+W +T V+ ++
Sbjct: 236 KSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQ 295
Query: 136 V--LSIAFSPCG-KYLASGGTGSYDKAVRLWSI 165
+ + G + S S D + + +
Sbjct: 296 LGNQQVGVVATGNGRIIS---LSLDGTLNFYEL 325
Score = 45.7 bits (106), Expect = 4e-06
Identities = 10/81 (12%), Positives = 24/81 (29%), Gaps = 3/81 (3%)
Query: 43 PYYTSGHDMTVWSVEACSKGLALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTC---ARF 99
++++ T D T R+W + ++ + KQ +
Sbjct: 245 EDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVV 304
Query: 100 HPKITYIGTGSYDKAVRLWSI 120
I + S D + + +
Sbjct: 305 ATGNGRIISLSLDGTLNFYEL 325
Score = 43.4 bits (100), Expect = 2e-05
Identities = 20/100 (20%), Positives = 33/100 (33%), Gaps = 13/100 (13%)
Query: 63 LALTGSRDTTARLWSLE--QMYPLRIFVGHKQD-VTCARFHPKI--TYIGTGSYDKAVRL 117
+A + R ++ P+ F GH VT +F P Y+ +G V +
Sbjct: 32 IAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIV 91
Query: 118 WSITDGASV--------RVFSDHVSPVLSIAFSPCGKYLA 149
W T F P+ I++ G+ L
Sbjct: 92 WGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLC 131
Score = 42.6 bits (98), Expect = 4e-05
Identities = 11/63 (17%), Positives = 22/63 (34%), Gaps = 6/63 (9%)
Query: 143 PCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPV--LSIAFSPCG-KYLASGGED 199
+ A T D +R+W +T V+ ++ + + G + S D
Sbjct: 261 LDSQKFA---TVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLD 317
Query: 200 GLV 202
G +
Sbjct: 318 GTL 320
Score = 42.2 bits (97), Expect = 6e-05
Identities = 15/79 (18%), Positives = 30/79 (37%), Gaps = 5/79 (6%)
Query: 179 SPVLSIAFSPCGKYLASG-GEDGLVLTHELTTGRVISRFHLQEH--EPVTSLVWS--VTG 233
+ +++ P +A G+ V + +V H VT++ +S
Sbjct: 18 NFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGS 77
Query: 234 ETLVTGSLTGTVQFYGWPS 252
+ L +G +G V +GW
Sbjct: 78 QYLCSGDESGKVIVWGWTF 96
Score = 39.1 bits (89), Expect = 4e-04
Identities = 30/215 (13%), Positives = 59/215 (27%), Gaps = 10/215 (4%)
Query: 44 YYTSGHDMTVWSVEACSKG---LALTGSRDTTARLWSLEQMYPLRIFV----GHKQDVTC 96
+ + +G + RD S + L
Sbjct: 109 SEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLK 168
Query: 97 ARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSY 156
+ +G + AS R S V + FSP
Sbjct: 169 QSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDR 228
Query: 157 DKAV-RLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISR 215
+ S + + V + + A+ G D + ++TT + + +
Sbjct: 229 KISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQK 288
Query: 216 FHLQEHE-PVTSLVWSVTGE-TLVTGSLTGTVQFY 248
+ L + + + TG +++ SL GT+ FY
Sbjct: 289 WTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFY 323
Score = 28.0 bits (60), Expect = 1.8
Identities = 9/49 (18%), Positives = 16/49 (32%), Gaps = 2/49 (4%)
Query: 30 NLESQKNLQSRYLPYYTSGHDMTVWSVEACSKGLALTGSRDTTARLWSL 78
++ + K +Q V A G ++ S D T + L
Sbjct: 279 DVTTSKCVQK--WTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL 325
>gi|206564140|ref|YP_002234903.1|(51-382:385) putative amine
dehydrogenase [Burkholderia cenocepacia J2315]
gi|198040180|emb|CAR56163.1| putative amine
dehydrogenase [Burkholderia cenocepacia J2315]
gi|194561004|ref|YP_002096029.1| hypothetical protein
BCPG_04901 [Burkholderia cenocepacia PC184]
gi|124876520|gb|EAY66510.1| hypothetical protein
BCPG_04901 [Burkholderia cenocepacia PC184]
gi|170737581|ref|YP_001778841.1| amine dehydrogenase
[Burkholderia cenocepacia MC0-3]
gi|169819769|gb|ACA94351.1| Amine dehydrogenase
[Burkholderia cenocepacia MC0-3]
gi|78061451|ref|YP_371359.1| amine dehydrogenase
[Burkholderia sp. 383] gi|77969336|gb|ABB10715.1|
Amine dehydrogenase [Burkholderia sp. 383]
gi|107025662|ref|YP_623173.1| amine dehydrogenase
[Burkholderia cenocepacia AU 1054]
gi|116693156|ref|YP_838689.1| amine dehydrogenase
[Burkholderia cenocepacia HI2424]
gi|105895036|gb|ABF78200.1| Amine dehydrogenase
[Burkholderia cenocepacia AU 1054]
gi|116651156|gb|ABK11796.1| Amine dehydrogenase
[Burkholderia cenocepacia HI2424] E=8e-14 s/c=0.25
id=29% cov=82%
Length = 321
Score = 53.1 bits (126), Expect = 1e-08
Identities = 18/205 (8%), Positives = 43/205 (20%), Gaps = 15/205 (7%)
Query: 62 GLALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTC---ARFHPKIT---YIGTGSYDKAV 115
G+R + + V + + + A
Sbjct: 39 SRGSHGTRTDVVEIIDNTTLDHAGEIVIPAKHAQHVPSPYNTAFSADGKRLYVANITPAA 98
Query: 116 RLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRV-- 173
+ I + + + + P G + S KA+ + +G +
Sbjct: 99 SVTVIDAVSKKML--SEIDTAACVLAYPAGDDRFTALCES-GKALTVTLDANGKEAKRTM 155
Query: 174 FSDHVSPVLSIAFSPCGKY---LASGGEDGLVLTHELTTGRVISRFHLQEHE-PVTSLVW 229
+ AF +Y G V + + + + + W
Sbjct: 156 SDAFIDVDKDPAFVNASRYKGDYLFTTYGGNVRSADFSGDKPAFGKPWSLLTDAERAEGW 215
Query: 230 SVTGETLVTGSLTGTVQFYGWPSAS 254
G + +
Sbjct: 216 RPGGMQQTAVQAKQNRYYVLMHKGT 240
Score = 46.9 bits (110), Expect = 2e-06
Identities = 10/141 (7%), Positives = 23/141 (16%), Gaps = 17/141 (12%)
Query: 116 RLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGG-------TGSYDKAVRLWSITDG 168
++ + P A +P K G+ V + T
Sbjct: 1 YVYDADAKKLLGQIDGGFGP--GFAIAPDRKASVVATTYFSRGSHGTRTDVVEIIDNTTL 58
Query: 169 ASVRVFSDHVSPVLSIA---FSPCGK---YLASGGEDGLVLTHELTTGRVISRFHLQEHE 222
+ + L + +
Sbjct: 59 DHAGEIVIPAKHAQHVPSPYNTAFSADGKRLYVANITPAASVTVIDAVSKKM--LSEIDT 116
Query: 223 PVTSLVWSVTGETLVTGSLTG 243
L + + +G
Sbjct: 117 AACVLAYPAGDDRFTALCESG 137
Score = 44.6 bits (104), Expect = 1e-05
Identities = 21/225 (9%), Positives = 38/225 (16%), Gaps = 45/225 (20%)
Query: 36 NLQSRYLPYYTSGHDMTVWSVEACSKGLALTGSRD-TTARLWSLEQMYPLR--IFVGHKQ 92
+ + + + + +
Sbjct: 102 VIDAVSKKMLSEIDTAACVLAYPAGDDRFTALCESGKALTVTLDANGKEAKRTMSDAFID 161
Query: 93 DVTCARFHPKITYIG---TGSYDKAVRLWSITDG--ASVRVFSDHVSPVLSIAFSPCGKY 147
F Y G +Y VR + A + +S + + P G
Sbjct: 162 VDKDPAFVNASRYKGDYLFTTYGGNVRSADFSGDKPAFGKPWSLLTDAERAEGWRPGGMQ 221
Query: 148 LASGG---------------------------TGSYDKAVRLWSITDGASVRVFSDHVSP 180
+ K V
Sbjct: 222 QTAVQAKQNRYYVLMHKGTDGSHKDPGTQVWVYDLKSKQRVARWDLAQQKVEPLV----- 276
Query: 181 VLSIAFSPCGKYL--ASGGEDGLVLTHELTTGRVISRFHLQEHEP 223
SI S K L LV+ + TG + +
Sbjct: 277 --SIQVSEDDKPLFYGLTATSDLVV-MDARTGALQHVEKQIGNTS 318
Score = 44.2 bits (103), Expect = 1e-05
Identities = 15/164 (9%), Positives = 33/164 (20%), Gaps = 11/164 (6%)
Query: 104 TYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIA---FSPCGKYLASGGTGSYDKAV 160
+ G+ V + T + + + A
Sbjct: 39 SRGSHGTRTDVVEIIDNTTLDHAGEIVIPAKHAQHVPSPYNTAFSADGKRLYVANITPAA 98
Query: 161 RLWSITDGASVRVFSDHVSPVLSIAFSPCGKYL-ASGGEDGL-VLTHELTTGRVISRFHL 218
+ I + + + + P G + E G + G+ R
Sbjct: 99 SVTVIDAVSKKML--SEIDTAACVLAYPAGDDRFTALCESGKALTVTLDANGKEAKRTMS 156
Query: 219 QEHEPVTSLVWSVTGE----TLVTGSLTGTVQFYGWPSASKIGI 258
V V + + G V+ +
Sbjct: 157 DAFIDVDKDPAFVNASRYKGDYLFTTYGGNVRSADFSGDKPAFG 200
>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of
cytochrome cd1-nitrite reductase {Paracoccus
denitrificans [TaxId: 266]}
Length = 432
Score = 50.2 bits (119), Expect = 2e-07
Identities = 22/211 (10%), Positives = 49/211 (23%), Gaps = 20/211 (9%)
Query: 63 LALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITD 122
++T L + V +R Y+ D V + +
Sbjct: 34 FSVTLRDAGQIALIDGSTYEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWM 92
Query: 123 G-----ASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDH 177
A +++ S+ S S KY + + + ++ S
Sbjct: 93 KEPTTVAEIKIGSEARSIETSKMEGWEDKYAIA--GAYWPPQYVIMDGETLEPKKIQSTR 150
Query: 178 VSPV-----------LSIAFSPCGKYL-ASGGEDGLVLTHELTTGRVISRFHLQEHEPVT 225
+I S + E G +L + T + + +
Sbjct: 151 GMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLH 210
Query: 226 SLVWSVTGETLVTGSLTGTVQFYGWPSASKI 256
+ +T + K+
Sbjct: 211 DGGLDGSHRYFITAANARNKLVVIDTKEGKL 241
Score = 39.0 bits (90), Expect = 7e-04
Identities = 15/116 (12%), Positives = 26/116 (22%), Gaps = 6/116 (5%)
Query: 153 TGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRV 212
T + L + V + S G+YL G DG V +L
Sbjct: 37 TLRDAGQIALIDGSTYEIKTVLDTGYAVH-ISRLSASGRYLFVIGRDGKVNMIDLWMKEP 95
Query: 213 ISRFHLQEHEPVTSLVWSVT----GETL-VTGSLTGTVQFYGWPSASKIGIGVYPR 263
+ ++ S+ S + + I
Sbjct: 96 TTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRG 151
>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain
{Paracoccus denitrificans [TaxId: 266]}
Length = 368
Score = 48.4 bits (114), Expect = 5e-07
Identities = 18/226 (7%), Positives = 47/226 (20%), Gaps = 23/226 (10%)
Query: 37 LQSRYLPYYTSGHDMTVWSVEACSKGLALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTC 96
+L +GH + +++ + S + G R ++ P+
Sbjct: 62 SLGAFLSLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFS 121
Query: 97 ARFHP-KITYIGTGSY-------DKAVRLWSITDGASVRVFSDHVSPVLS-------IAF 141
I + + A S+ + ++ +
Sbjct: 122 VGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLG 181
Query: 142 SPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGEDGL 201
S AS + + + + G + + L
Sbjct: 182 SCPASLAAS---DLAAAPAAAGIVG----AQCTGAQNCSSQAAQANYPGMLVWAVASSIL 234
Query: 202 VLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQF 247
+ + E + + G +V
Sbjct: 235 QGDIPAAGATMKAAIDGNESG-RKADNFRSAGFQMVAKLKNTDGIM 279
>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain
{Paracoccus denitrificans [TaxId: 266]}
Length = 355
Score = 47.9 bits (112), Expect = 7e-07
Identities = 23/209 (11%), Positives = 52/209 (24%), Gaps = 29/209 (13%)
Query: 52 TVWSVEACSKGLALTGSRDTTARLWSLEQMYPLRI------FVGHKQDVTCARFHPKITY 105
+ + + RD + + I + + + K
Sbjct: 149 DCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGR 208
Query: 106 IGTGSYDKAVRLWSITDGA--SVRVFSDHVSPVLSIAFSPCGKYLASGG----------- 152
+ +Y + ++ G + + + P G +
Sbjct: 209 LVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVD 268
Query: 153 ------TGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYL--ASGGEDGLVLT 204
+ + V + G + F + SI S K L A D +
Sbjct: 269 QRDEWRHKTASRFVVVLDAKTGERLAKFEMG-HEIDSINVSQDEKPLLYALSTGDKTLYI 327
Query: 205 HELTTGRVISRFHLQEHEPVTSLVWSVTG 233
H+ +G + + H P + + G
Sbjct: 328 HDAESGEELRSVNQLGHGP-QVITTADMG 355
Score = 44.8 bits (104), Expect = 8e-06
Identities = 16/146 (10%), Positives = 36/146 (24%), Gaps = 20/146 (13%)
Query: 135 PVLSIAFSPCGK--YLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKY 192
P + A +P + Y+ + + G + + P + + G +
Sbjct: 3 PRILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGSF 60
Query: 193 LA----------SGGEDGLVLTHELTTGRVISRFHLQEHEP------VTSLVWSVTGETL 236
+A G V + T + L + + G+TL
Sbjct: 61 IAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTL 120
Query: 237 VTGSLTGTVQFYGWPSASKIGIGVYP 262
+ + K +
Sbjct: 121 LFYQFSPAPAVGVVDLEGKAFKRMLD 146
Score = 35.2 bits (79), Expect = 0.009
Identities = 20/189 (10%), Positives = 42/189 (22%), Gaps = 10/189 (5%)
Query: 66 TGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHP---------KITYIGTGSYDKAVR 116
G R ++ + P +P K S AV
Sbjct: 73 RGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVG 132
Query: 117 LWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSD 176
+ + A R+ + G+ + + + +
Sbjct: 133 VVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPE 192
Query: 177 HVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEP-VTSLVWSVTGET 235
+ A+S L G + +L++G ++ + W G
Sbjct: 193 DEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQ 252
Query: 236 LVTGSLTGT 244
V
Sbjct: 253 QVAYHRALD 261
>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli
[TaxId: 562]}
Length = 333
Score = 45.6 bits (106), Expect = 5e-06
Identities = 15/96 (15%), Positives = 33/96 (34%), Gaps = 8/96 (8%)
Query: 102 KITYIGTGSYDKAVRLWSITDGASVRVFS--DHVSPVLSIAFSPCGKYLASGGTGSYDKA 159
+ YI + + +W++ ++ + D V + SP +YL G +
Sbjct: 4 QTVYI-ASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVG--VRPEFR 60
Query: 160 VRLWSITDG---ASVRVFSDHVSPVLSIAFSPCGKY 192
V + I + S + I+ G++
Sbjct: 61 VLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQF 96
Score = 37.1 bits (84), Expect = 0.002
Identities = 11/74 (14%), Positives = 25/74 (33%), Gaps = 3/74 (4%)
Query: 153 TGSYDKAVRLWSITDGASVRVFS--DHVSPVLSIAFSPCGKYL-ASGGEDGLVLTHELTT 209
+ + +W++ ++ + D V + SP +YL + VL + +
Sbjct: 9 ASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAP 68
Query: 210 GRVISRFHLQEHEP 223
F + P
Sbjct: 69 DDGALTFAAESALP 82
Score = 33.7 bits (75), Expect = 0.032
Identities = 18/171 (10%), Positives = 34/171 (19%), Gaps = 8/171 (4%)
Query: 1 MDLSHLNHGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPY---YTSGHDMTVWSVE 57
D L K F ++A ++ P + E
Sbjct: 137 PDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNE 196
Query: 58 ACSKGLALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRL 117
S F + + +
Sbjct: 197 LNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITV 256
Query: 118 WSITDGASVRVFSDHVSP---VLSIAFSPCGKYLASGGTGSYDKAVRLWSI 165
+S+++ SV GKYL + G + ++ I
Sbjct: 257 FSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIA--AGQKSHHISVYEI 305
Score = 28.3 bits (61), Expect = 1.5
Identities = 8/50 (16%), Positives = 16/50 (32%), Gaps = 3/50 (6%)
Query: 154 GSYDKAVRLWSITDGASVRVFSDHVSP---VLSIAFSPCGKYLASGGEDG 200
+ ++S+++ SV GKYL + G+
Sbjct: 248 DRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKS 297
>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon
Methanosarcina mazei [TaxId: 2209]}
Length = 301
Score = 40.2 bits (92), Expect = 2e-04
Identities = 7/61 (11%), Positives = 16/61 (26%), Gaps = 3/61 (4%)
Query: 108 TGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITD 167
S + + +T +P+ SP G + ++ V +
Sbjct: 7 ANSESDNISVIDVTSNKVTATIPVGSNPM-GAVISPDGTKVYV--ANAHSNDVSIIDTAT 63
Query: 168 G 168
Sbjct: 64 N 64
Score = 38.3 bits (87), Expect = 8e-04
Identities = 10/66 (15%), Positives = 19/66 (28%), Gaps = 2/66 (3%)
Query: 153 TGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYL-ASGGEDGLVLTHELTTGR 211
S + + +T +P+ SP G + + V + T
Sbjct: 7 ANSESDNISVIDVTSNKVTATIPVGSNPM-GAVISPDGTKVYVANAHSNDVSIIDTATNN 65
Query: 212 VISRFH 217
VI+
Sbjct: 66 VIATVP 71
Score = 36.4 bits (82), Expect = 0.004
Identities = 12/105 (11%), Positives = 21/105 (20%), Gaps = 3/105 (2%)
Query: 76 WSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSP 135
+ + K Y V + P
Sbjct: 187 TVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDP 246
Query: 136 VLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSP 180
IA +P GK + S+ V + + +P
Sbjct: 247 A-GIAVTPDGKKVYV--ALSFCNTVSVIDTATNTITATMAVGKNP 288
Score = 33.7 bits (75), Expect = 0.030
Identities = 21/130 (16%), Positives = 34/130 (26%), Gaps = 2/130 (1%)
Query: 88 VGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKY 147
V + P T + ++D T SV + IA +P G
Sbjct: 154 VSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTK 213
Query: 148 LASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYL-ASGGEDGLVLTHE 206
Y V + P IA +P GK + + V +
Sbjct: 214 AYVTNVDKYFNTVSMIDTGTNKITARIPVGPDPA-GIAVTPDGKKVYVALSFCNTVSVID 272
Query: 207 LTTGRVISRF 216
T + +
Sbjct: 273 TATNTITATM 282
>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of
cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa
[TaxId: 287]}
Length = 426
Score = 39.2 bits (90), Expect = 5e-04
Identities = 18/116 (15%), Positives = 30/116 (25%), Gaps = 3/116 (2%)
Query: 118 WSITD-GASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSD 176
W + + S +V L S T + L V+V
Sbjct: 2 WGMPEMRESWKVLVKPEDRPKKQLNDLDLPNLFSV-TLRDAGQIALVDGDSKKIVKVIDT 60
Query: 177 HVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVT 232
+ S G+YL G D + +L ++ S+ S
Sbjct: 61 GYAVH-ISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKF 115
>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia
coli [TaxId: 562]}
Length = 269
Score = 38.3 bits (87), Expect = 8e-04
Identities = 15/113 (13%), Positives = 27/113 (23%), Gaps = 1/113 (0%)
Query: 76 WSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAVRLWSITDGASVRVFSDHVSP 135
++ P RI Q+ + S +
Sbjct: 156 VNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTFL 215
Query: 136 VLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSP 188
+ + +P G + + + L S DG V A+SP
Sbjct: 216 DETPSLAPNGTMVIYSSSQGMGSVLNLVST-DGRFKARLPATDGQVKFPAWSP 267
Score = 37.9 bits (86), Expect = 0.001
Identities = 29/98 (29%), Positives = 43/98 (43%), Gaps = 3/98 (3%)
Query: 99 FHPKITYIG-TGSYDKAVRLW-SITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSY 156
F +I Y+ T L S DG + V P++S A+SP G LA S
Sbjct: 2 FRTRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESG 61
Query: 157 DKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLA 194
A+ + ++ +G +VR + + AFSP G LA
Sbjct: 62 RSALVIQTLANG-AVRQVASFPRHNGAPAFSPDGSKLA 98
>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal
domain {Pseudomonas nautica [TaxId: 2743]}
Length = 441
Score = 38.0 bits (88), Expect = 0.001
Identities = 21/164 (12%), Positives = 38/164 (23%), Gaps = 23/164 (14%)
Query: 56 VEACSKGLALTGSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHPKITYIGTGSYDKAV 115
A G T + + R K +I G V
Sbjct: 223 AAAVKAGNFKTIGDSKVPVVDGRGESEFTRYIPVPKNPHGLNTSPDGKYFIANGKLSPTV 282
Query: 116 RLWSIT----------DGASVRV-FSDHVSPVLSIAFSPCGKYLASGG------TGSYDK 158
+ +I + V + L F G + +
Sbjct: 283 SVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIAD 342
Query: 159 AVRLWS------ITDGASVRVFSDHVSPVLSIAFSPCGKYLASG 196
A++ ++ I V+ H L+ + GK+L
Sbjct: 343 AIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVL 386
Score = 37.6 bits (87), Expect = 0.002
Identities = 23/145 (15%), Positives = 40/145 (27%), Gaps = 29/145 (20%)
Query: 40 RYLPYYTSGHDMTVWSVEACSKGLALTGSRDTTARLWSLEQMY--------PLRIFVGHK 91
RY+P + H + K G T + +++++ V
Sbjct: 252 RYIPVPKNPHGLNTSPDG---KYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEP 308
Query: 92 QDVTCA---RFHPKITYIGTGSYDKAVRLWSI------TDGASVRVFSD---------HV 133
+ F + T D V W+I +G V H
Sbjct: 309 ELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHN 368
Query: 134 SPVLSIAFSPCGKYLASGGTGSYDK 158
L+ + GK+L S D+
Sbjct: 369 HASLTESRDADGKWLVVLSKFSKDR 393
Score = 29.5 bits (66), Expect = 0.67
Identities = 21/135 (15%), Positives = 37/135 (27%), Gaps = 9/135 (6%)
Query: 105 YIGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSI--AFSPCGKYLASGGTGSYDKAVRL 162
++ G D+ WS VRV L F+ G G +++ +
Sbjct: 2 HVAPGELDEYYGFWSGGHQGEVRVLGVPSMRELMRIPVFNVDSAT----GWGITNESKEI 57
Query: 163 WSITDGASVRVFSDHVSPVLSIAFSPCGKYL-ASGGEDGLVLTHELTTGRVISRFHLQEH 221
H + GKYL + + V L + H+
Sbjct: 58 L--GGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNV 115
Query: 222 EPVTSLVWSVTGETL 236
+ + L +T
Sbjct: 116 QAIHGLRLQKVPKTN 130
Score = 27.2 bits (60), Expect = 3.6
Identities = 22/208 (10%), Positives = 52/208 (25%), Gaps = 32/208 (15%)
Query: 40 RYLPYYTSGHD--MTVWSVEA----------CSKGLALTGSRDTTARLWSLEQMYPLRIF 87
Y +++ GH + V V + G + + + L
Sbjct: 10 EYYGFWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEI--LGGDQQYLNG 67
Query: 88 VGHKQDVTCARFHPKITYI-GTGSYDKAVRLWSITDGASVRVFS-DHVSPVLSIAFSPCG 145
H ++ Y+ + V + + ++ +V + +
Sbjct: 68 DCHHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVP 127
Query: 146 KYL-------------ASGGTGSYDKAVRLWSITDGASVRVFSDHVSP--VLSIAFSPCG 190
K G S D + +++ D ++ V + + + G
Sbjct: 128 KTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVIVDGNLDNTDADYTG 187
Query: 191 KYLASGGEDG-LVLTHELTTGRVISRFH 217
KY S + + T
Sbjct: 188 KYATSTCYNSERAVDLAGTMRNDRDWVV 215
>d1u14a_ c.51.4.3 (A:) Hypothetical protein YjjX {Salmonella
typhimurium [TaxId: 90371]}
Length = 169
Score = 33.2 bits (76), Expect = 0.019
Identities = 21/88 (23%), Positives = 37/88 (42%), Gaps = 7/88 (7%)
Query: 256 IGIGVYPRCAAQPVGFEAATLAANSRVRTLREMHEIVGPVVVVESFIVEIRPDKWYEANL 315
+ V QP G E A +RV R +H V +E+ I D +
Sbjct: 34 TPVAVESGVPEQPFGSEETRAGARNRVDNARRLHPQADFWVAIEAGI-----DDDATFSW 88
Query: 316 IVLDDDLKECNLETYSQMIPVPSGIVEE 343
+V+D+ ++ E S +P+P+ I++
Sbjct: 89 VVIDNGVQR--GEARSATLPLPAVILDR 114
>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26,
N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}
Length = 470
Score = 33.9 bits (76), Expect = 0.028
Identities = 17/182 (9%), Positives = 45/182 (24%), Gaps = 13/182 (7%)
Query: 7 NHGDHKHFIQNSFKPETVEDVLANLESQKNLQSRYLPYYTSGHDMTVWSVEACSKGLALT 66
++ + + L ++++++ + + +
Sbjct: 280 RIQNYSVMDICDYDESSGR--WNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKII 337
Query: 67 GSRDTTARLWSLEQMYPLRIFVGHKQDVTCARFHP---KITYIGTGSYDKAVR--LWSI- 120
+ + + + F+ + YI L+ I
Sbjct: 338 SNEEGYRHICYFQIDKKDCTFITKGTWEVIGIEALTSDYLYYISNEYKGMPGGRNLYKIQ 397
Query: 121 TDGASVRV-----FSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFS 175
+ + S++FS KY +G L S + +RV
Sbjct: 398 LSDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRVLE 457
Query: 176 DH 177
D+
Sbjct: 458 DN 459
Score = 28.2 bits (61), Expect = 1.9
Identities = 21/191 (10%), Positives = 47/191 (24%), Gaps = 16/191 (8%)
Query: 33 SQKNLQSRYLPYYTSGHDMTVWSVEACSKGLALTGSRDTTARLWSLEQMYPLRIFVGHKQ 92
+Q+ + ++L + M + + +G + +E +
Sbjct: 269 TQERISLQWLRRIQNYSVMDICDYDE------SSGRWNCLVARQHIEMSTTGWVGRFRPS 322
Query: 93 DVTCARFHPKITYI-GTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASG 151
+ I + + + I + + A + Y S
Sbjct: 323 EPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFITKGTWEVIGIEALTSDYLYYISN 382
Query: 152 GTGSYDKAVRLWSI-TDGASVRV-----FSDHVSPVLSIAFSPCGKYLA---SGGEDGLV 202
L+ I + + S++FS KY SG L
Sbjct: 383 EYKGMPGGRNLYKIQLSDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLY 442
Query: 203 LTHELTTGRVI 213
H + +
Sbjct: 443 TLHSSVNDKGL 453
>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain
{Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Length = 281
Score = 31.3 bits (69), Expect = 0.16
Identities = 15/89 (16%), Positives = 29/89 (32%), Gaps = 10/89 (11%)
Query: 117 LWSI-TDGASVRVFSDHVSPVLSIAFSPCGKYLASG---GTGSYDKAVRLWSITDGASVR 172
LW S R ++ + + F P G+ +A G+ + ++ +G R
Sbjct: 23 LWEHDLKSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKR 82
Query: 173 V------FSDHVSPVLSIAFSPCGKYLAS 195
+ + F P G + S
Sbjct: 83 ITYFSGKSTGRRMFTDVAGFDPDGNLIIS 111
>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue
{Nostoc punctiforme [TaxId: 272131]}
Length = 302
Score = 29.6 bits (65), Expect = 0.50
Identities = 20/143 (13%), Positives = 42/143 (29%), Gaps = 5/143 (3%)
Query: 138 SIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGG 197
++A +P G + + SIT + ++ + V +AF+ G +A+G
Sbjct: 32 NLASAPDGTIFVTNHEVG-----EIVSITPDGNQQIHATVEGKVSGLAFTSNGDLVATGW 86
Query: 198 EDGLVLTHELTTGRVISRFHLQEHEPVTSLVWSVTGETLVTGSLTGTVQFYGWPSASKIG 257
+ L L + + + +T + + + G
Sbjct: 87 NADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSG 146
Query: 258 IGVYPRCAAQPVGFEAATLAANS 280
E+ AAN
Sbjct: 147 SIWLEHPMLARSNSESVFPAANG 169
Score = 28.9 bits (63), Expect = 0.85
Identities = 15/110 (13%), Positives = 31/110 (28%)
Query: 116 RLWSITDGASVRVFSDHVSPVLSIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFS 175
+ SIT + ++ + V +AF+ G +A+G V L +
Sbjct: 50 EIVSITPDGNQQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTL 109
Query: 176 DHVSPVLSIAFSPCGKYLASGGEDGLVLTHELTTGRVISRFHLQEHEPVT 225
+ I +YL + G + ++
Sbjct: 110 PDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSN 159
>d1zwya1 c.51.4.3 (A:9-181) Hypothetical protein VC0702 {Vibrio
cholerae [TaxId: 666]}
Length = 173
Score = 28.2 bits (63), Expect = 1.2
Identities = 22/98 (22%), Positives = 41/98 (41%), Gaps = 7/98 (7%)
Query: 246 QFYGWPSASKIGIGVYPRCAAQPVGFEAATLAANSRVRTLREMHEIVGPVVVVESFIVEI 305
+ IG+ V A QP+ E A +RVR ++ H V +E+ I E
Sbjct: 24 TVFPDQEWEFIGVSVPSEVADQPMSDEETKQGALNRVRNAKQRHPGAEYYVGLEAGIEEN 83
Query: 306 RPDKWYEANLIVLDDDLKECNLETYSQMIPVPSGIVEE 343
+ W ++++ D + E+ S + +P ++E
Sbjct: 84 KTFAW-----MIVESDQQR--GESRSACLMLPPLVLER 114
>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein
6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId:
9606]}
Length = 465
Score = 26.9 bits (58), Expect = 4.1
Identities = 7/39 (17%), Positives = 12/39 (30%)
Query: 138 SIAFSPCGKYLASGGTGSYDKAVRLWSITDGASVRVFSD 176
S +FS + G V + + TD +
Sbjct: 414 SASFSHSMDFFLLKCEGPGVPMVTVHNTTDKKKMFDLET 452
>d2d3sa1 b.29.1.1 (A:1-237) Legume lectin {Winged bean (Psophocarpus
tetragonolobus), basic agglutinin [TaxId: 3891]}
Length = 237
Score = 25.5 bits (55), Expect = 8.9
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 269 VGFEAATLAANSRVRTLREMHEIVG 293
VGF AAT + + R E H+I+
Sbjct: 204 VGFSAATGDPSGKQRNATETHDILS 228
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.134 0.411
Gapped
Lambda K H
0.267 0.0415 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,326,099
Number of extensions: 61071
Number of successful extensions: 477
Number of sequences better than 10.0: 1
Number of HSP's gapped: 291
Number of HSP's successfully gapped: 156
Length of query: 351
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 265
Effective length of database: 1,226,816
Effective search space: 325106240
Effective search space used: 325106240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)