BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5190
(292 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1I49|A Chain A, Crystal Structure Analysis Of Arfaptin
pdb|1I49|B Chain B, Crystal Structure Analysis Of Arfaptin
pdb|1I4D|A Chain A, Crystal Structure Analysis Of Rac1-Gdp Complexed With
Arfaptin (P21)
pdb|1I4D|B Chain B, Crystal Structure Analysis Of Rac1-Gdp Complexed With
Arfaptin (P21)
pdb|1I4L|A Chain A, Crystal Structure Analysis Of Rac1-Gdp In Complex With
Arfaptin (P41)
pdb|1I4L|B Chain B, Crystal Structure Analysis Of Rac1-Gdp In Complex With
Arfaptin (P41)
pdb|1I4T|A Chain A, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With
Arfaptin
pdb|1I4T|B Chain B, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With
Arfaptin
Length = 224
Score = 219 bits (557), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 107/167 (64%), Positives = 131/167 (78%), Gaps = 1/167 (0%)
Query: 110 QQTLGEAFADLAQKSPELQEEFLCNSETQRNLTGTGEILLNALNLFVSSVNTLCNKTIED 169
Q LG+AFADL+QKSPELQEEF N+ETQ+ L GE LL A+N FVSS+NTL KT+ED
Sbjct: 44 QHALGDAFADLSQKSPELQEEFGYNAETQKLLCKNGETLLGAVNFFVSSINTLVTKTMED 103
Query: 170 TLVTVRQYENARVEYDAYRTDLELLLQVTSNVDSNCSHLDEAQRNFQTHRENFEKLRNDV 229
TL+TV+QYE AR+EYDAYRTDLE L + + L+ AQ FQ HR+ +EKLR DV
Sbjct: 104 TLMTVKQYEAARLEYDAYRTDLEELSLGPRDAGTR-GRLESAQATFQAHRDKYEKLRGDV 162
Query: 230 VVKLRFLDENRIKVMHKQLLLFHNAISAYFSGNEPGLQATLKQFNIK 276
+KL+FL+EN+IKVMHKQLLLFHNA+SAYF+GN+ L+ TL+QFNIK
Sbjct: 163 AIKLKFLEENKIKVMHKQLLLFHNAVSAYFAGNQKQLEQTLQQFNIK 209
>pdb|4DCN|C Chain C, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In
Complex With Arl1
pdb|4DCN|D Chain D, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In
Complex With Arl1
Length = 198
Score = 204 bits (520), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 99/155 (63%), Positives = 121/155 (78%), Gaps = 1/155 (0%)
Query: 110 QQTLGEAFADLAQKSPELQEEFLCNSETQRNLTGTGEILLNALNLFVSSVNTLCNKTIED 169
Q LG+AFADL+QKSPELQEEF N+ETQ+ L GE LL A+N FVSS+NTL KT+ED
Sbjct: 44 QHALGDAFADLSQKSPELQEEFGYNAETQKLLCKNGETLLGAVNFFVSSINTLVTKTMED 103
Query: 170 TLVTVRQYENARVEYDAYRTDLELLLQVTSNVDSNCSHLDEAQRNFQTHRENFEKLRNDV 229
TL+TV+QYE AR+EYDAYRTDLE L + + L+ AQ FQ HR+ +EKLR DV
Sbjct: 104 TLMTVKQYEAARLEYDAYRTDLEELSLGPRDAGTR-GRLESAQATFQAHRDKYEKLRGDV 162
Query: 230 VVKLRFLDENRIKVMHKQLLLFHNAISAYFSGNEP 264
+KL+FL+EN+IKVMHKQLLLFHNA+SAYF+GN+
Sbjct: 163 AIKLKFLEENKIKVMHKQLLLFHNAVSAYFAGNQK 197
>pdb|1PBX|A Chain A, Haemoglobin Of The Antarctic Fish Pagothenia Bernacchii:
Amino Acid Sequence, Oxygen Equilibria And Crystal
Structure Of Its Carbonmonoxy Derivative
pdb|3GKV|A Chain A, X-Ray Structure Of An Intermediate Along The Oxidation
Pathway Of Trematomus Bernacchii Hemoglobin
pdb|3GQG|A Chain A, Crystal Structure At Acidic Ph Of The Ferric Form Of The
Root Effect Hemoglobin From Trematomus Bernacchii.
pdb|3GQG|C Chain C, Crystal Structure At Acidic Ph Of The Ferric Form Of The
Root Effect Hemoglobin From Trematomus Bernacchii.
pdb|1HBH|A Chain A, Structure Of Deoxyhaemoglobin Of The Antarctic Fish
Pagothenia Bernacchii And Structural Basis Of The Root
Effect
pdb|1HBH|C Chain C, Structure Of Deoxyhaemoglobin Of The Antarctic Fish
Pagothenia Bernacchii And Structural Basis Of The Root
Effect
pdb|1S5X|A Chain A, The Crystal Structure Of Trematomus Bernacchii Hemoglobin
Oxidized By Air
pdb|2PEG|A Chain A, Crystal Structure Of Trematomus Bernacchii Hemoglobin In A
Partial Hemichrome State
pdb|2H8D|A Chain A, Crystal Structure Of Deoxy Hemoglobin From Trematomus
Bernacchii At Ph 8.4
pdb|2H8D|C Chain C, Crystal Structure Of Deoxy Hemoglobin From Trematomus
Bernacchii At Ph 8.4
pdb|2H8F|A Chain A, Crystal Structure Of Deoxy Hemoglobin From Trematomus
Bernacchii At Ph 6.2
pdb|2H8F|C Chain C, Crystal Structure Of Deoxy Hemoglobin From Trematomus
Bernacchii At Ph 6.2
pdb|1S5Y|A Chain A, The Crystal Structure Of Trematomus Bernacchii Hemoglobin
Oxidized By Ferricyanide
pdb|1S5Y|C Chain C, The Crystal Structure Of Trematomus Bernacchii Hemoglobin
Oxidized By Ferricyanide
pdb|4G51|A Chain A, Crystallographic Analysis Of The Interaction Of Nitric
Oxide With Hemoglobin From Trematomus Bernacchii In The
T Quaternary Structure (fully Ligated State).
pdb|4G51|C Chain C, Crystallographic Analysis Of The Interaction Of Nitric
Oxide With Hemoglobin From Trematomus Bernacchii In The
T Quaternary Structure (fully Ligated State).
pdb|4IRO|A Chain A, Crystal Structure Of T-state Carbonmonoxy Hemoglobin From
Trematomus Bernacchii At Ph 8.4
pdb|4IRO|C Chain C, Crystal Structure Of T-state Carbonmonoxy Hemoglobin From
Trematomus Bernacchii At Ph 8.4
Length = 143
Score = 32.0 bits (71), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 19/91 (20%), Positives = 41/91 (45%), Gaps = 14/91 (15%)
Query: 78 KCTRQIMYEKLGKSTRTVDSDLKSRVLVIFFLQQTLGEAFADLAQKSPELQEEFLCNSET 137
K + ++ K+GKS + +D SR++V++ +T + D+ SP ++
Sbjct: 8 KAAVRALWSKIGKSADAIGNDALSRMIVVYPQTKTYFSHWPDVTPGSPHIKAH------- 60
Query: 138 QRNLTGTGEILLNALNLFVSSVNTLCNKTIE 168
G+ ++ + L VS ++ L +E
Sbjct: 61 -------GKKVMGGIALAVSKIDDLKTGLME 84
>pdb|4ESA|A Chain A, X-Ray Structure Of Carbonmonoxy Hemoglobin Of Eleginops
Maclovinus
pdb|4ESA|C Chain C, X-Ray Structure Of Carbonmonoxy Hemoglobin Of Eleginops
Maclovinus
Length = 143
Score = 32.0 bits (71), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 18/85 (21%), Positives = 41/85 (48%), Gaps = 14/85 (16%)
Query: 78 KCTRQIMYEKLGKSTRTVDSDLKSRVLVIFFLQQTLGEAFADLAQKSPELQEEFLCNSET 137
K ++++ K+ KS+ + +D SR++V++ +T + DL+ SP ++
Sbjct: 8 KAAVKLLWSKISKSSDAIGNDALSRMIVVYPQTKTYFAHWPDLSPGSPHVKAH------- 60
Query: 138 QRNLTGTGEILLNALNLFVSSVNTL 162
G+ ++ + L VS ++ L
Sbjct: 61 -------GKTVMGGIALAVSKIDDL 78
>pdb|3NFE|A Chain A, The Crystal Structure Of Hemoglobin I From Trematomus
Newnesi In Deoxygenated State
pdb|3NFE|C Chain C, The Crystal Structure Of Hemoglobin I From Trematomus
Newnesi In Deoxygenated State
pdb|3NG6|A Chain A, The Crystal Structure Of Hemoglobin I From Trematomus
Newnesi In Deoxygenated State Obtained Through An
OxidationREDUCTION CYCLE IN Which Potassium
Hexacyanoferrate And Sodium Dithionite Were
Alternatively Added
pdb|3NG6|C Chain C, The Crystal Structure Of Hemoglobin I From Trematomus
Newnesi In Deoxygenated State Obtained Through An
OxidationREDUCTION CYCLE IN Which Potassium
Hexacyanoferrate And Sodium Dithionite Were
Alternatively Added
pdb|2AA1|A Chain A, Crystal Structure Of The Cathodic Hemoglobin Isolated From
The Antarctic Fish Trematomus Newnesi
pdb|2AA1|C Chain C, Crystal Structure Of The Cathodic Hemoglobin Isolated From
The Antarctic Fish Trematomus Newnesi
pdb|1T1N|A Chain A, Crystal Structure Of Carbonmonoxy Hemoglobin
pdb|1LA6|A Chain A, The Crystal Structure Of Trematomus Newnesi Hemoglobin In
A Partial Hemichrome State
Length = 143
Score = 31.2 bits (69), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 19/91 (20%), Positives = 41/91 (45%), Gaps = 14/91 (15%)
Query: 78 KCTRQIMYEKLGKSTRTVDSDLKSRVLVIFFLQQTLGEAFADLAQKSPELQEEFLCNSET 137
K + ++ K+GKS+ + +D SR++V++ + + D+ SP
Sbjct: 8 KAAVRALWSKIGKSSDAIGNDALSRMIVVYPQTKIYFSHWPDVTPGSP------------ 55
Query: 138 QRNLTGTGEILLNALNLFVSSVNTLCNKTIE 168
N+ G+ ++ + L VS ++ L +E
Sbjct: 56 --NIKAHGKKVMGGIALAVSKIDDLKTGLME 84
>pdb|3D1K|A Chain A, RT INTERMEDIATE QUATERNARY STRUCTURE OF AN ANTARCTIC FISH
Hemoglobin In An Alpha(Co)-Beta(Pentacoordinate) State
Length = 142
Score = 31.2 bits (69), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 19/91 (20%), Positives = 41/91 (45%), Gaps = 14/91 (15%)
Query: 78 KCTRQIMYEKLGKSTRTVDSDLKSRVLVIFFLQQTLGEAFADLAQKSPELQEEFLCNSET 137
K + ++ K+GKS+ + +D SR++V++ + + D+ SP
Sbjct: 7 KAAVRALWSKIGKSSDAIGNDALSRMIVVYPQTKIYFSHWPDVTPGSP------------ 54
Query: 138 QRNLTGTGEILLNALNLFVSSVNTLCNKTIE 168
N+ G+ ++ + L VS ++ L +E
Sbjct: 55 --NIKAHGKKVMGGIALAVSKIDDLKTGLME 83
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.130 0.367
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,118,348
Number of Sequences: 62578
Number of extensions: 317656
Number of successful extensions: 686
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 678
Number of HSP's gapped (non-prelim): 26
length of query: 292
length of database: 14,973,337
effective HSP length: 98
effective length of query: 194
effective length of database: 8,840,693
effective search space: 1715094442
effective search space used: 1715094442
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 51 (24.3 bits)