Query psy5190
Match_columns 292
No_of_seqs 110 out of 139
Neff 4.4
Searched_HMMs 46136
Date Fri Aug 16 19:39:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5190.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5190hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3876|consensus 100.0 3.4E-82 7.3E-87 584.8 25.6 265 25-291 50-341 (341)
2 PF06456 Arfaptin: Arfaptin-li 100.0 1.2E-64 2.6E-69 460.9 19.2 192 75-266 7-229 (229)
3 cd07660 BAR_Arfaptin The Bin/A 100.0 3.5E-64 7.6E-69 450.7 20.0 177 96-273 1-201 (201)
4 cd00011 BAR_Arfaptin_like The 100.0 1.9E-62 4.2E-67 440.2 20.1 176 96-271 1-202 (203)
5 cd07659 BAR_PICK1 The Bin/Amph 100.0 5.9E-62 1.3E-66 437.2 18.2 170 105-275 34-215 (215)
6 cd07661 BAR_ICA69 The Bin/Amph 100.0 6.3E-52 1.4E-56 370.0 18.4 176 96-273 1-204 (204)
7 KOG3651|consensus 100.0 1.5E-48 3.2E-53 367.7 14.3 173 105-278 164-348 (429)
8 KOG3891|consensus 100.0 2.2E-45 4.7E-50 349.5 19.8 209 68-276 17-255 (436)
9 smart00721 BAR BAR domain. 99.7 8.1E-15 1.8E-19 129.3 20.5 195 75-272 4-236 (239)
10 cd07307 BAR The Bin/Amphiphysi 99.6 5.1E-14 1.1E-18 116.9 18.8 161 105-269 25-191 (194)
11 PF03114 BAR: BAR domain; Int 99.5 7.6E-12 1.6E-16 107.5 19.2 189 75-272 3-227 (229)
12 cd07616 BAR_Endophilin_B1 The 98.9 1.8E-07 3.8E-12 86.4 17.2 154 109-271 70-227 (229)
13 cd07617 BAR_Endophilin_B2 The 98.7 1.1E-06 2.5E-11 80.7 16.7 144 110-271 71-218 (220)
14 cd07594 BAR_Endophilin_B The B 98.7 3.5E-06 7.7E-11 77.8 19.1 152 111-271 72-227 (229)
15 cd07588 BAR_Amphiphysin The Bi 98.6 6.6E-06 1.4E-10 75.1 19.1 176 86-268 1-201 (211)
16 cd07591 BAR_Rvs161p The Bin/Am 98.4 3.4E-05 7.5E-10 70.6 18.5 118 156-277 98-215 (224)
17 cd07637 BAR_ACAP3 The Bin/Amph 98.4 6.5E-05 1.4E-09 68.0 19.2 166 97-268 12-195 (200)
18 cd07600 BAR_Gvp36 The Bin/Amph 98.4 3.2E-05 6.9E-10 72.0 17.5 189 66-272 36-241 (242)
19 cd07590 BAR_Bin3 The Bin/Amphi 98.4 7.8E-05 1.7E-09 68.7 19.8 182 90-275 4-214 (225)
20 cd07639 BAR_ACAP1 The Bin/Amph 98.3 0.0001 2.3E-09 67.0 18.5 158 105-268 34-195 (200)
21 cd07603 BAR_ACAPs The Bin/Amph 98.2 0.00023 5E-09 64.3 19.2 158 105-268 34-195 (200)
22 cd07606 BAR_SFC_plant The Bin/ 98.2 0.00023 4.9E-09 64.7 19.0 159 105-268 33-198 (202)
23 PF09325 Vps5: Vps5 C terminal 98.2 0.00033 7.2E-09 62.4 19.0 163 105-271 56-235 (236)
24 cd07612 BAR_Bin2 The Bin/Amphi 98.1 0.00031 6.6E-09 64.5 18.4 171 87-268 2-201 (211)
25 cd07601 BAR_APPL The Bin/Amphi 98.1 0.00054 1.2E-08 62.9 19.7 166 97-267 12-200 (215)
26 cd07595 BAR_RhoGAP_Rich-like T 98.1 0.0003 6.5E-09 65.5 18.3 207 62-279 20-230 (244)
27 cd07611 BAR_Amphiphysin_I_II T 98.1 0.00035 7.6E-09 64.1 18.2 169 87-264 2-197 (211)
28 cd07604 BAR_ASAPs The Bin/Amph 98.1 0.0003 6.6E-09 64.4 17.8 163 105-268 34-207 (215)
29 cd07593 BAR_MUG137_fungi The B 98.1 0.00033 7.1E-09 64.3 17.6 191 65-275 15-210 (215)
30 cd07624 BAR_SNX7_30 The Bin/Am 98.1 0.00052 1.1E-08 61.5 18.5 151 105-269 46-197 (200)
31 cd07638 BAR_ACAP2 The Bin/Amph 98.1 0.00065 1.4E-08 61.8 18.8 166 97-268 12-195 (200)
32 cd07623 BAR_SNX1_2 The Bin/Amp 98.1 0.00098 2.1E-08 60.7 19.9 165 105-270 44-220 (224)
33 cd07592 BAR_Endophilin_A The B 98.0 0.00043 9.4E-09 63.8 16.1 193 63-277 13-220 (223)
34 cd07627 BAR_Vps5p The Bin/Amph 98.0 0.001 2.2E-08 60.2 18.1 163 105-268 36-212 (216)
35 cd07602 BAR_RhoGAP_OPHN1-like 97.9 0.0023 5.1E-08 58.6 19.8 159 105-268 34-202 (207)
36 cd07642 BAR_ASAP2 The Bin/Amph 97.9 0.0018 3.9E-08 59.8 18.4 163 105-268 34-207 (215)
37 cd07618 BAR_Rich1 The Bin/Amph 97.9 0.0014 3.1E-08 61.3 18.1 199 63-274 21-227 (246)
38 cd07614 BAR_Endophilin_A2 The 97.9 0.00062 1.3E-08 62.9 15.1 192 63-277 13-220 (223)
39 cd07636 BAR_GRAF The Bin/Amphi 97.8 0.0021 4.5E-08 59.0 18.0 159 105-268 34-202 (207)
40 cd07613 BAR_Endophilin_A1 The 97.8 0.00076 1.6E-08 62.4 14.7 152 109-277 65-220 (223)
41 cd07634 BAR_GAP10-like The Bin 97.8 0.0021 4.5E-08 58.9 17.3 159 105-268 34-202 (207)
42 cd07596 BAR_SNX The Bin/Amphip 97.7 0.0041 8.9E-08 53.9 17.5 158 105-270 36-216 (218)
43 cd07635 BAR_GRAF2 The Bin/Amph 97.7 0.005 1.1E-07 56.5 18.7 159 105-268 34-202 (207)
44 cd07663 BAR_SNX5 The Bin/Amphi 97.7 0.0069 1.5E-07 56.0 19.5 154 105-273 48-217 (218)
45 cd07628 BAR_Atg24p The Bin/Amp 97.6 0.0086 1.9E-07 53.3 18.2 145 105-269 36-182 (185)
46 cd07641 BAR_ASAP1 The Bin/Amph 97.6 0.012 2.5E-07 54.5 18.9 163 105-268 34-207 (215)
47 cd07648 F-BAR_FCHO The F-BAR ( 97.6 0.0091 2E-07 55.0 18.3 171 105-276 30-237 (261)
48 KOG3771|consensus 97.6 0.0065 1.4E-07 61.4 18.0 182 77-262 10-213 (460)
49 cd07674 F-BAR_FCHO1 The F-BAR 97.5 0.0083 1.8E-07 55.8 17.6 171 105-276 30-237 (261)
50 cd07615 BAR_Endophilin_A3 The 97.5 0.0025 5.5E-08 58.9 14.0 193 63-277 13-220 (223)
51 cd07664 BAR_SNX2 The Bin/Amphi 97.5 0.019 4E-07 53.3 19.7 163 105-268 54-228 (234)
52 cd07619 BAR_Rich2 The Bin/Amph 97.5 0.015 3.3E-07 54.6 19.1 198 63-273 21-228 (248)
53 cd07621 BAR_SNX5_6 The Bin/Amp 97.4 0.063 1.4E-06 49.7 21.7 171 87-272 14-217 (219)
54 cd07665 BAR_SNX1 The Bin/Amphi 97.4 0.02 4.4E-07 53.3 18.5 163 105-268 54-228 (234)
55 cd07662 BAR_SNX6 The Bin/Amphi 97.4 0.031 6.7E-07 51.8 19.4 154 105-273 55-217 (218)
56 cd07599 BAR_Rvs167p The Bin/Am 97.4 0.025 5.3E-07 50.9 18.0 163 105-268 34-211 (216)
57 cd07630 BAR_SNX_like The Bin/A 97.4 0.043 9.4E-07 49.7 19.3 148 106-270 37-196 (198)
58 cd07651 F-BAR_PombeCdc15_like 97.4 0.033 7.1E-07 50.7 18.6 164 105-268 30-233 (236)
59 cd07633 BAR_OPHN1 The Bin/Amph 97.3 0.038 8.3E-07 50.9 18.9 159 105-268 34-202 (207)
60 cd07598 BAR_FAM92 The Bin/Amph 97.3 0.057 1.2E-06 49.4 20.1 158 105-269 36-198 (211)
61 cd07631 BAR_APPL1 The Bin/Amph 97.3 0.037 7.9E-07 51.3 18.6 158 105-267 34-200 (215)
62 PF08397 IMD: IRSp53/MIM homol 97.2 0.056 1.2E-06 49.0 18.8 168 105-275 28-210 (219)
63 cd07673 F-BAR_FCHO2 The F-BAR 97.2 0.037 8.1E-07 52.0 18.2 169 105-277 37-245 (269)
64 cd07672 F-BAR_PSTPIP2 The F-BA 97.1 0.074 1.6E-06 49.4 18.9 165 105-269 30-238 (240)
65 PF10455 BAR_2: Bin/amphiphysi 97.1 0.047 1E-06 52.4 17.9 159 105-273 125-287 (289)
66 cd07655 F-BAR_PACSIN The F-BAR 97.1 0.036 7.8E-07 51.5 16.5 180 72-256 2-239 (258)
67 cd07640 BAR_ASAP3 The Bin/Amph 97.1 0.025 5.5E-07 52.1 14.5 161 107-268 36-205 (213)
68 cd07622 BAR_SNX4 The Bin/Amphi 97.0 0.1 2.2E-06 47.4 18.0 150 105-269 46-196 (201)
69 cd07647 F-BAR_PSTPIP The F-BAR 97.0 0.13 2.7E-06 47.2 18.4 165 105-269 30-237 (239)
70 cd07626 BAR_SNX9_like The Bin/ 96.9 0.06 1.3E-06 49.1 15.9 147 109-273 41-199 (199)
71 cd07625 BAR_Vps17p The Bin/Amp 96.9 0.084 1.8E-06 49.1 17.0 163 105-268 50-226 (230)
72 cd07649 F-BAR_GAS7 The F-BAR ( 96.8 0.044 9.6E-07 50.7 14.1 175 83-258 9-220 (233)
73 KOG1118|consensus 96.8 0.074 1.6E-06 52.0 15.9 187 75-278 3-240 (366)
74 cd07632 BAR_APPL2 The Bin/Amph 96.6 0.14 3E-06 47.5 15.6 151 120-275 56-208 (215)
75 cd07629 BAR_Atg20p The Bin/Amp 96.5 0.37 8E-06 43.1 17.3 144 105-269 37-184 (187)
76 cd07671 F-BAR_PSTPIP1 The F-BA 96.4 0.43 9.3E-06 44.4 18.0 165 105-269 30-237 (242)
77 KOG0521|consensus 96.4 0.14 2.9E-06 55.3 16.4 159 105-268 53-215 (785)
78 cd07667 BAR_SNX30 The Bin/Amph 96.4 0.31 6.8E-06 45.8 16.9 155 105-270 83-238 (240)
79 cd07650 F-BAR_Syp1p_like The F 96.3 0.46 1E-05 43.6 17.1 61 212-272 145-205 (228)
80 KOG3725|consensus 95.9 1.2 2.6E-05 43.0 18.6 96 177-273 162-262 (375)
81 cd07680 F-BAR_PACSIN1 The F-BA 95.9 0.91 2E-05 42.9 17.8 180 72-256 2-239 (258)
82 cd07646 I-BAR_IMD_IRSp53 Inver 95.5 2.3 5E-05 40.0 18.2 171 96-270 21-219 (232)
83 cd07666 BAR_SNX7 The Bin/Amphi 95.4 2.4 5.3E-05 39.9 18.3 152 105-270 86-241 (243)
84 cd07620 BAR_SH3BP1 The Bin/Amp 95.4 1.4 3.1E-05 41.9 16.8 119 153-272 106-236 (257)
85 cd07681 F-BAR_PACSIN3 The F-BA 94.7 4.1 8.8E-05 38.7 19.3 184 72-260 2-243 (258)
86 cd07653 F-BAR_CIP4-like The F- 94.6 2.7 5.9E-05 38.2 16.0 165 105-269 30-246 (251)
87 cd07685 F-BAR_Fes The F-BAR (F 94.5 4.2 9.2E-05 38.4 17.0 90 138-243 100-196 (237)
88 cd07679 F-BAR_PACSIN2 The F-BA 94.1 5 0.00011 38.2 16.9 179 72-256 2-239 (258)
89 PF10456 BAR_3_WASP_bdg: WASP- 94.0 1.1 2.4E-05 41.9 12.3 151 106-273 75-236 (237)
90 cd07605 I-BAR_IMD Inverse (I)- 93.9 5.5 0.00012 37.0 18.4 165 105-272 38-218 (223)
91 cd07676 F-BAR_FBP17 The F-BAR 92.6 9.1 0.0002 35.9 18.3 135 135-269 80-248 (253)
92 cd07637 BAR_ACAP3 The Bin/Amph 92.1 1.5 3.3E-05 39.9 9.9 132 127-260 14-158 (200)
93 cd07589 BAR_DNMBP The Bin/Amph 92.1 8.6 0.00019 34.5 17.2 87 166-266 100-186 (195)
94 cd07645 I-BAR_IMD_BAIAP2L1 Inv 91.5 12 0.00027 35.1 18.1 159 105-270 38-217 (226)
95 cd07668 BAR_SNX9 The Bin/Amphi 91.2 10 0.00022 35.4 14.2 150 108-274 48-208 (210)
96 cd07610 FCH_F-BAR The Extended 91.0 9.4 0.0002 32.8 16.6 156 105-269 25-189 (191)
97 KOG2273|consensus 90.8 16 0.00035 36.8 16.8 164 105-270 306-495 (503)
98 cd07607 BAR_SH3P_plant The Bin 90.6 14 0.00031 34.1 17.0 165 105-269 33-206 (209)
99 cd07669 BAR_SNX33 The Bin/Amph 89.8 17 0.00036 33.9 14.4 149 108-273 48-207 (207)
100 cd07686 F-BAR_Fer The F-BAR (F 89.6 18 0.00039 33.9 15.5 112 160-271 111-223 (234)
101 cd07670 BAR_SNX18 The Bin/Amph 88.6 21 0.00045 33.2 14.2 150 107-273 47-207 (207)
102 cd07661 BAR_ICA69 The Bin/Amph 87.8 1.5 3.3E-05 40.5 6.3 147 108-261 23-185 (204)
103 cd07657 F-BAR_Fes_Fer The F-BA 87.6 24 0.00051 32.8 15.7 85 150-234 94-189 (237)
104 cd07602 BAR_RhoGAP_OPHN1-like 86.4 11 0.00025 34.7 11.2 122 138-261 25-166 (207)
105 cd07636 BAR_GRAF The Bin/Amphi 86.3 4 8.7E-05 37.7 8.2 96 137-234 24-128 (207)
106 PF13805 Pil1: Eisosome compon 85.2 31 0.00068 33.2 13.8 44 94-137 50-93 (271)
107 cd07633 BAR_OPHN1 The Bin/Amph 85.0 3.6 7.9E-05 38.1 7.2 95 138-234 25-128 (207)
108 cd07658 F-BAR_NOSTRIN The F-BA 84.3 34 0.00075 31.6 18.5 176 72-252 2-238 (239)
109 cd07604 BAR_ASAPs The Bin/Amph 83.9 23 0.0005 32.6 12.0 114 127-242 14-133 (215)
110 cd07675 F-BAR_FNBP1L The F-BAR 83.0 16 0.00034 34.7 10.8 108 147-254 92-232 (252)
111 cd07639 BAR_ACAP1 The Bin/Amph 80.3 28 0.00061 31.9 11.1 98 138-237 25-125 (200)
112 cd07634 BAR_GAP10-like The Bin 79.3 18 0.00039 33.5 9.5 92 139-235 26-129 (207)
113 cd07601 BAR_APPL The Bin/Amphi 78.5 57 0.0012 30.3 12.7 123 137-261 24-165 (215)
114 PF06456 Arfaptin: Arfaptin-li 78.5 29 0.00063 32.2 10.8 42 111-152 57-104 (229)
115 cd07609 BAR_SIP3_fungi The Bin 78.4 39 0.00084 31.2 11.5 151 63-237 7-167 (214)
116 cd07606 BAR_SFC_plant The Bin/ 77.5 58 0.0013 29.8 12.2 137 97-260 11-161 (202)
117 cd07652 F-BAR_Rgd1 The F-BAR ( 76.4 64 0.0014 29.8 17.2 126 127-252 63-226 (234)
118 KOG2398|consensus 75.4 1.2E+02 0.0026 32.4 18.2 144 112-269 58-216 (611)
119 KOG1660|consensus 70.0 1.3E+02 0.0028 30.5 14.1 102 166-274 296-397 (399)
120 cd07635 BAR_GRAF2 The Bin/Amph 69.1 42 0.00091 31.1 9.3 120 138-260 25-165 (207)
121 cd07603 BAR_ACAPs The Bin/Amph 69.1 91 0.002 28.3 12.2 123 137-261 24-159 (200)
122 cd07643 I-BAR_IMD_MIM Inverse 67.8 1.1E+02 0.0024 28.9 13.6 89 105-196 40-136 (231)
123 cd07638 BAR_ACAP2 The Bin/Amph 65.6 1.1E+02 0.0024 28.1 12.3 132 127-260 14-158 (200)
124 PF10455 BAR_2: Bin/amphiphysi 64.2 1.4E+02 0.003 29.0 12.1 56 173-231 160-217 (289)
125 cd07660 BAR_Arfaptin The Bin/A 60.3 1.4E+02 0.0031 27.6 13.7 35 105-139 20-54 (201)
126 KOG2856|consensus 58.7 94 0.002 31.8 10.1 84 171-254 138-246 (472)
127 cd00011 BAR_Arfaptin_like The 55.9 1.7E+02 0.0037 27.1 14.1 46 107-152 22-72 (203)
128 PF10191 COG7: Golgi complex c 54.4 3.2E+02 0.007 29.8 14.3 115 141-258 32-163 (766)
129 TIGR00634 recN DNA repair prot 52.5 2.9E+02 0.0062 28.6 13.5 75 106-188 224-302 (563)
130 cd07596 BAR_SNX The Bin/Amphip 52.2 1.5E+02 0.0033 25.4 15.6 42 182-226 96-137 (218)
131 PRK10869 recombination and rep 48.7 3.4E+02 0.0073 28.3 13.9 78 105-188 219-297 (553)
132 cd07653 F-BAR_CIP4-like The F- 48.5 2.1E+02 0.0045 25.9 15.3 53 108-160 19-75 (251)
133 PF06730 FAM92: FAM92 protein; 46.9 2.5E+02 0.0055 26.4 17.2 151 117-271 55-207 (219)
134 PF04782 DUF632: Protein of un 44.0 1.9E+02 0.0041 28.3 9.5 83 174-274 101-200 (312)
135 PF10158 LOH1CR12: Tumour supp 34.9 1.9E+02 0.0042 24.8 7.2 43 206-257 63-105 (131)
136 cd07631 BAR_APPL1 The Bin/Amph 34.9 2.9E+02 0.0062 26.0 8.8 31 203-233 94-125 (215)
137 KOG0979|consensus 34.8 4.9E+02 0.011 29.8 11.8 122 70-198 115-264 (1072)
138 cd07644 I-BAR_IMD_BAIAP2L2 Inv 34.1 4.1E+02 0.0088 25.1 16.3 153 105-269 38-207 (215)
139 cd07307 BAR The Bin/Amphiphysi 33.9 2.6E+02 0.0056 22.7 17.0 32 105-136 11-42 (194)
140 PLN02939 transferase, transfer 32.7 1.1E+02 0.0023 34.7 6.5 32 231-262 358-392 (977)
141 PF05384 DegS: Sensor protein 32.3 1.2E+02 0.0026 27.0 5.6 26 247-272 126-151 (159)
142 PF06810 Phage_GP20: Phage min 30.8 2.4E+02 0.0052 24.6 7.3 24 175-198 20-43 (155)
143 KOG3156|consensus 27.4 5.4E+02 0.012 24.4 9.2 23 139-161 58-80 (220)
144 TIGR03185 DNA_S_dndD DNA sulfu 27.1 7.6E+02 0.016 26.0 11.9 79 150-231 182-262 (650)
145 cd07595 BAR_RhoGAP_Rich-like T 24.3 6E+02 0.013 23.8 9.2 83 76-158 136-226 (244)
146 cd07658 F-BAR_NOSTRIN The F-BA 23.2 6E+02 0.013 23.4 12.7 17 110-126 21-37 (239)
147 PF06160 EzrA: Septation ring 22.0 9.2E+02 0.02 25.2 12.8 33 213-245 407-439 (560)
148 cd07632 BAR_APPL2 The Bin/Amph 21.6 6.9E+02 0.015 23.6 11.3 58 203-260 94-164 (215)
149 KOG0933|consensus 21.5 3.9E+02 0.0085 30.7 8.2 87 168-268 670-759 (1174)
150 PF12128 DUF3584: Protein of u 20.5 6.7E+02 0.014 28.7 10.0 77 164-240 777-857 (1201)
151 KOG2629|consensus 20.3 8.4E+02 0.018 24.1 10.4 95 66-160 80-192 (300)
No 1
>KOG3876|consensus
Probab=100.00 E-value=3.4e-82 Score=584.77 Aligned_cols=265 Identities=53% Similarity=0.786 Sum_probs=246.1
Q ss_pred ccCCCCCCCCcccccCCCCCCCCCCCCCC---CCCCCCCCchhhhhhhhhcccchhHHHHHHHHHHhCCCCccCchhhhH
Q psy5190 25 GVNIPPPHPTSLDLSHTMAPMSFPTSPSG---NSEGNPKSPVSKIESIKNWGISTYKCTRQIMYEKLGKSTRTVDSDLKS 101 (292)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~k~~~~k~W~~~tyk~TKQ~l~EklGk~~~TvD~ELea 101 (292)
+.|.+-+.+..++.++...|.++|++.++ .++-.+.+..+|+|++|+|||+|||||||+|.|+|||++||||+|||+
T Consensus 50 s~G~~~~k~s~~~~r~~r~p~tt~t~s~P~~~~~~I~~~~aa~K~es~kkWsi~TyKctkQillEklGk~~rTVD~ElEa 129 (341)
T KOG3876|consen 50 SMGLLSKKNSIIPYRQNRQPLTTPTPSGPLEKCDEIDRAQAAEKVESVKKWSINTYKCTKQILLEKLGKGSRTVDLELEA 129 (341)
T ss_pred ecccCCCCCceeecccCCCCCCCCCCCCCcccCchhhhhHHHHHHHHHHhccccchhhHHHHHHHHhcCCccccCHHHHH
Confidence 34457778888999998777776544333 244555689999999999999999999999999999999999999999
Q ss_pred HH-------------------H-----HHHHHHHHHHHHHHHHhhcChhhHHHHhhchhhhhhhhHhhHHHHHhHHHHHH
Q psy5190 102 RV-------------------L-----VIFFLQQTLGEAFADLAQKSPELQEEFLCNSETQRNLTGTGEILLNALNLFVS 157 (292)
Q Consensus 102 kI-------------------l-----~l~qtq~~lgd~F~~Ls~kEpeL~~eF~~naetqr~m~k~G~~Ll~aL~~f~s 157 (292)
|| | +++++|++|||.|++||+++|||+++|++|+|+||.+++||++|+++|+||++
T Consensus 130 Qie~Lrd~~rkY~~vl~lar~fS~~l~qmv~tq~~L~dsFadLs~K~~elq~eft~nseTqr~l~kngetLl~alnfFIs 209 (341)
T KOG3876|consen 130 QIEVLRDTKRKYESVLALARAFSHHLTQMVETQHALGDSFADLSQKSPELQEEFTYNSETQRLLGKNGETLLGALNFFIS 209 (341)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHhCcCHHHHHHHhhhHHHHHHHHHHHHH
Confidence 99 1 79999999999999999999999999999999999999999999999999999
Q ss_pred hHHHhhhhhhhhHHHHHHHHHHhhHhHHHHHhhHHHhhccccCcccccchHHHHHHHHHHHHHHHHhHHhHHHHHHhhhc
Q psy5190 158 SVNTLCNKTIEDTLVTVRQYENARVEYDAYRTDLELLLQVTSNVDSNCSHLDEAQRNFQTHRENFEKLRNDVVVKLRFLD 237 (292)
Q Consensus 158 dl~Tf~~KAI~DTllTIkkYE~AR~EYdAyrl~leem~~e~~~~~~~l~r~etaqr~~q~aK~rFdKLR~DV~vKLdLLd 237 (292)
+|||+|||+|+||++||++||.||+||||||+|++++...|++ +....+++.+|+.|+++|++|+|||+||.+||+||+
T Consensus 210 SvnTl~nkTi~DTL~Ti~qyEsARiEyDayR~Dle~~~l~P~~-~~t~~~le~aq~~~q~hkekYeKlrnDvaiKmkfLe 288 (341)
T KOG3876|consen 210 SVNTLVNKTIEDTLMTIKQYESARIEYDAYRTDLEELTLGPRD-ALTKNLLEGAQEKFQAHKEKYEKLRNDVAIKMKFLE 288 (341)
T ss_pred HHHHHHhhhhHHHHHHHHHhhhhhhhhhhhhhhHHHhcCCccc-cccccccHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999887 346788999999999999999999999999999999
Q ss_pred ccchhHHHHHHHHHHHHHHHHHhcCHHHHHHHhhhcccccccCCCCCCCccccc
Q psy5190 238 ENRIKVMHKQLLLFHNAISAYFSGNEPGLQATLKQFNIKTNKIPSQNSMLYSAE 291 (292)
Q Consensus 238 enRvkvm~~QL~~~~nAl~ay~sgn~~~Le~tl~~F~i~~~~~~~~~~~~~~~~ 291 (292)
|||++|||+||.+||||++|||+||+.+|+++++||+|+++ -|+...|+|++|
T Consensus 289 ENrIkVmh~QL~llhnAiaAYfsGNak~LE~tlkqf~iklk-pp~a~~pswlee 341 (341)
T KOG3876|consen 289 ENRIKVMHKQLELLHNAIAAYFSGNAKQLEQTLKQFNIKLK-PPGAFIPSWLEE 341 (341)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHhceecC-CCCCCcchhccC
Confidence 99999999999999999999999999999999999999999 578899999987
No 2
>PF06456 Arfaptin: Arfaptin-like domain; InterPro: IPR010504 Arfaptin interacts with ARF1, a small GTPase involved in vesicle budding at the Golgi complex and immature secretory granules. The structure of arfaptin shows that upon binding to a small GTPase, arfaptin forms a an elongated, crescent-shaped dimer of three-helix coiled-coils []. The N-terminal region of ICA69 is similar to arfaptin [].; PDB: 1I4D_B 1I4L_B 1I49_B 1I4T_A 4DCN_D.
Probab=100.00 E-value=1.2e-64 Score=460.87 Aligned_cols=192 Identities=51% Similarity=0.768 Sum_probs=164.0
Q ss_pred chhHHHHHHHHHHhCCCCc----cCchhhhHHH--H----------------------HHHHHHHHHHHHHHHHhh--cC
Q psy5190 75 STYKCTRQIMYEKLGKSTR----TVDSDLKSRV--L----------------------VIFFLQQTLGEAFADLAQ--KS 124 (292)
Q Consensus 75 ~tyk~TKQ~l~EklGk~~~----TvD~ELeakI--l----------------------~l~qtq~~lgd~F~~Ls~--kE 124 (292)
+|||||||+++|++|++++ |||+|||+|| | .++++|++||++|+++|+ ++
T Consensus 7 ~~~~~tkq~~~e~~g~~~~~~~it~D~eL~~kle~l~~~~~~y~~L~~~~~~~~~~l~~l~q~q~~lg~~f~~~~~~e~~ 86 (229)
T PF06456_consen 7 STYKCTKQMVSEKLGKKEDSRAITVDDELDAKLELLRDTQRTYRGLLKHARAYQNRLQALSQTQKELGDFFAELGVREKS 86 (229)
T ss_dssp -----------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H-
T ss_pred hhHHHHHHHHHHHcCcccccchhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 8999999999999999998 9999999999 1 799999999999999999 66
Q ss_pred hhhHHHHhhchhhhhhhhHhhHHHHHhHHHHHHhHHHhhhhhhhhHHHHHHHHHHhhHhHHHHHhhHHHhhccccCc-cc
Q psy5190 125 PELQEEFLCNSETQRNLTGTGEILLNALNLFVSSVNTLCNKTIEDTLVTVRQYENARVEYDAYRTDLELLLQVTSNV-DS 203 (292)
Q Consensus 125 peL~~eF~~naetqr~m~k~G~~Ll~aL~~f~sdl~Tf~~KAI~DTllTIkkYE~AR~EYdAyrl~leem~~e~~~~-~~ 203 (292)
|+|+++|+.||++|+.++++|++|+++|+||++||+||++||||||++||++||+||+||||||+|||+|++|.++. +.
T Consensus 87 ~~l~~~f~~~~~~~~~~~~~~~~L~~~l~~~~~~l~Tf~~kaI~DT~~Tik~ye~aR~EY~ay~~~lke~~~e~~~~~~~ 166 (229)
T PF06456_consen 87 PALGEEFSANGEAQRSLAKQGETLLKALKRFLSDLNTFRNKAIPDTLLTIKKYEDARFEYDAYRLWLKEMSDELDPDTAK 166 (229)
T ss_dssp CCGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--TSTSSTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCchhhc
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999888764 45
Q ss_pred ccchHHHHHHHHHHHHHHHHhHHhHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHhcCHHHH
Q psy5190 204 NCSHLDEAQRNFQTHRENFEKLRNDVVVKLRFLDENRIKVMHKQLLLFHNAISAYFSGNEPGL 266 (292)
Q Consensus 204 ~l~r~etaqr~~q~aK~rFdKLR~DV~vKLdLLdenRvkvm~~QL~~~~nAl~ay~sgn~~~L 266 (292)
++++++.+|.+++.+|+||++||+||++||+|||+||||||++||.+|||||++||+||+++|
T Consensus 167 ~~~~~r~~q~~~~~~k~rf~kLr~Dv~~Kl~LL~~~rv~~~~~qL~~~~~al~~y~~~~~~~l 229 (229)
T PF06456_consen 167 QEPKFRVAQGNYQEAKERFDKLRSDVLVKLDLLDENRVNVMSHQLVLFQNALAAYFSGNAQAL 229 (229)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHhhC
Confidence 889999999999999999999999999999999999999999999999999999999999986
No 3
>cd07660 BAR_Arfaptin The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin. The BAR domain of Arfaptin-like proteins, also called the Arfaptin domain, is a dimerization and lipid binding module that can detect and drive membrane curvature. Arfaptins are ubiquitously expressed proteins implicated in mediating cross-talk between Rac, a member of the Rho family GTPases, and Arf (ADP-ribosylation factor) small GTPases. Arfaptins bind to GTP-bound Arf1, Arf5, and Arf6, with strongest binding to GTP-Arf1. Arfaptins also bind to Rac-GTP and Rac-GDP with similar affinities. The Arfs are thought to bind to the same surface as Rac, and their binding is mutually exclusive. Mammals contain at least two isoforms of Arfaptin. Arfaptin 1 has been shown to inhibit the activation of Arf-dependent phospholipase D (PLD) and the secretion of matrix metalloproteinase-9 (MMP-9), an enzyme implicated in cancer invasiveness and metastasis. Arfaptin 2 regulates the aggregation of the protein huntingtin, which is im
Probab=100.00 E-value=3.5e-64 Score=450.66 Aligned_cols=177 Identities=63% Similarity=0.946 Sum_probs=173.1
Q ss_pred chhhhHHH------------------------HHHHHHHHHHHHHHHHHhhcChhhHHHHhhchhhhhhhhHhhHHHHHh
Q psy5190 96 DSDLKSRV------------------------LVIFFLQQTLGEAFADLAQKSPELQEEFLCNSETQRNLTGTGEILLNA 151 (292)
Q Consensus 96 D~ELeakI------------------------l~l~qtq~~lgd~F~~Ls~kEpeL~~eF~~naetqr~m~k~G~~Ll~a 151 (292)
|+|||+|| .+++++|++||++|++||++||+++++|++|+++||.+++||+.|++|
T Consensus 1 D~eLeaklE~L~~~q~~Y~~ll~~~~~l~~~~~~l~qtq~~Lg~~f~~l~~k~p~l~~af~~~aet~k~l~kng~~Ll~a 80 (201)
T cd07660 1 DLELEAQIEVLRDTQRKYESVLRLARALASQFYQMLQTQKALGDAFADLSQKSPELQEEFTYNAETQKLLCKNGETLLGA 80 (201)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 89999999 179999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHHHhhhhhhhhHHHHHHHHHHhhHhHHHHHhhHHHhhccccCcccccchHHHHHHHHHHHHHHHHhHHhHHHH
Q psy5190 152 LNLFVSSVNTLCNKTIEDTLVTVRQYENARVEYDAYRTDLELLLQVTSNVDSNCSHLDEAQRNFQTHRENFEKLRNDVVV 231 (292)
Q Consensus 152 L~~f~sdl~Tf~~KAI~DTllTIkkYE~AR~EYdAyrl~leem~~e~~~~~~~l~r~etaqr~~q~aK~rFdKLR~DV~v 231 (292)
|+||++|||||++||||||++||++||+|||||||||+|+|+++.++++ ..+++||+++|.+|+.+|+||+|||+||++
T Consensus 81 l~~f~s~l~T~~~kai~DT~lTI~~ye~aR~EYdayr~D~ee~~~~~~~-~~~l~r~~~~q~~~~~~k~kf~KLR~DV~~ 159 (201)
T cd07660 81 LNFFVSSLNTLVNKTMEDTLMTVKQYESARIEYDAYRNDLEALNLGPRD-AATSARLEEAQRRFQAHKDKYEKLRNDVSV 159 (201)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHhhhHhHHHHhccHHHcccCCCc-cchHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999987 569999999999999999999999999999
Q ss_pred HHhhhcccchhHHHHHHHHHHHHHHHHHhcCHHHHHHHhhhc
Q psy5190 232 KLRFLDENRIKVMHKQLLLFHNAISAYFSGNEPGLQATLKQF 273 (292)
Q Consensus 232 KLdLLdenRvkvm~~QL~~~~nAl~ay~sgn~~~Le~tl~~F 273 (292)
||+|||+||||||+|||++|||||++||+||+++|+++++||
T Consensus 160 Kl~lLeenrv~vm~~QL~~f~~a~~ay~sgn~~~L~~~~~~~ 201 (201)
T cd07660 160 KLKFLEENKVKVMHKQLLLFHNAISAYFSGNQKQLEQTLKQF 201 (201)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999997
No 4
>cd00011 BAR_Arfaptin_like The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin-like proteins, a dimerization module that binds and bends membranes. The BAR domain of Arfaptin-like proteins, also called the Arfaptin domain, is a dimerization, lipid binding and curvature sensing module present in Arfaptins, PICK1, ICA69, and similar proteins. Arfaptins are ubiquitously expressed proteins implicated in mediating cross-talk between Rac, a member of the Rho family GTPases, and Arf (ADP-ribosylation factor) small GTPases. Arfaptins bind to GTP-bound Arf1, Arf5, and Arf6, with strongest binding to GTP-Arf1. Arfaptins also binds to Rac-GTP and Rac-GDP with similar affinities. The Arfs are thought to bind to the same surface as Rac, and their binding is mutually exclusive. Protein Interacting with C Kinase 1 (PICK1) plays a key role in the trafficking of AMPA receptors, which are critical for regulating synaptic strength and may be important in cellular processes involved in learning and memory. Is
Probab=100.00 E-value=1.9e-62 Score=440.16 Aligned_cols=176 Identities=56% Similarity=0.836 Sum_probs=170.4
Q ss_pred chhhhHHH------------------------HHHHHHHHHHHHHHHHHhhcChhh-HHHHhhchhhhhhhhHhhHHHHH
Q psy5190 96 DSDLKSRV------------------------LVIFFLQQTLGEAFADLAQKSPEL-QEEFLCNSETQRNLTGTGEILLN 150 (292)
Q Consensus 96 D~ELeakI------------------------l~l~qtq~~lgd~F~~Ls~kEpeL-~~eF~~naetqr~m~k~G~~Ll~ 150 (292)
|.|||+|| .+++|+|++||+.|++||++||++ +++|++||++||.+++||+.|++
T Consensus 1 D~eL~akle~l~~~~~~y~~Ll~~~~~~~~~~~~l~q~q~~lG~~f~~l~~~~~~~a~~~f~~~~~a~r~~~k~g~~ll~ 80 (203)
T cd00011 1 DLELELQLELLRETKRKYESVLQLGRALTAHLYSLSQTQHALGDAFADLSQKDPELAGEEFGYNAEAQKLLCKNGETLLG 80 (203)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 88999999 179999999999999999999998 79999999999999999999999
Q ss_pred hHHHHHHhHHHhhhhhhhhHHHHHHHHHHhhHhHHHHHhhHHHhhccccC-cccccchHHHHHHHHHHHHHHHHhHHhHH
Q psy5190 151 ALNLFVSSVNTLCNKTIEDTLVTVRQYENARVEYDAYRTDLELLLQVTSN-VDSNCSHLDEAQRNFQTHRENFEKLRNDV 229 (292)
Q Consensus 151 aL~~f~sdl~Tf~~KAI~DTllTIkkYE~AR~EYdAyrl~leem~~e~~~-~~~~l~r~etaqr~~q~aK~rFdKLR~DV 229 (292)
||+||++||+||++||||||++||++||+|||||||||+|||+|++++++ +...+|+++.+|+||+.+|+||+|||+||
T Consensus 81 ~l~~~~~~l~T~~~kai~DT~lTI~~ye~aR~EY~a~~l~~ke~~~e~~~~~~~~~~k~r~~q~~~~~~k~kf~kLr~Dv 160 (203)
T cd00011 81 AVNFFVSSINTLVTKAIEDTLLTVKQYEAARLEYDAYRLDLKELSLEPRDDTAGTRGRLRSAQATFQEHRDKFEKLRGDV 160 (203)
T ss_pred HHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHhHHHHHHHHHHhcccCCcccccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999986 45689999999999999999999999999
Q ss_pred HHHHhhhcccchhHHHHHHHHHHHHHHHHHhcCHHHHHHHhh
Q psy5190 230 VVKLRFLDENRIKVMHKQLLLFHNAISAYFSGNEPGLQATLK 271 (292)
Q Consensus 230 ~vKLdLLdenRvkvm~~QL~~~~nAl~ay~sgn~~~Le~tl~ 271 (292)
++|||||++||||||+|||++|||||++||+||+++|++++.
T Consensus 161 ~~Kl~lL~~~r~~~l~~qL~~~~~al~~y~~~~~~~l~~~~~ 202 (203)
T cd00011 161 AIKLKFLEENKIKVMHKQLLLFHNTVSAYFAGNQKVLEQTLQ 202 (203)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhc
Confidence 999999999999999999999999999999999999999864
No 5
>cd07659 BAR_PICK1 The Bin/Amphiphysin/Rvs (BAR) domain of Protein Interacting with C Kinase 1. The BAR domain of Arfaptin-like proteins, also called the Arfaptin domain, is a dimerization and lipid binding module that can detect and drive membrane curvature. Protein Interacting with C Kinase 1 (PICK1), also called Protein kinase C-alpha-binding protein, is highly expressed in brain and testes. PICK1 plays a key role in the trafficking of AMPA receptors, which are critical for regulating synaptic strength and may be important in cellular processes involved in learning and memory. PICK1 is also critical in the early stages of spermiogenesis. Mice deficient in PICK1 are infertile and show characteristics of the human disease globozoospermia such as round-headed sperm, reduced sperm count, and severely impaired sperm motility. PICK1 may also be involved in the neuropathogenesis of schizophrenia. PICK1 contains an N-terminal PDZ domain and a C-terminal BAR domain. BAR domains form dimers th
Probab=100.00 E-value=5.9e-62 Score=437.16 Aligned_cols=170 Identities=28% Similarity=0.408 Sum_probs=163.9
Q ss_pred HHHHHHHHHHHHHHHHhhcCh--hhHHHHhhchhhhhhhhHhhHHHHHhHHHHHHhHHHhhhhhhhhHHHHHHHHHHhhH
Q psy5190 105 VIFFLQQTLGEAFADLAQKSP--ELQEEFLCNSETQRNLTGTGEILLNALNLFVSSVNTLCNKTIEDTLVTVRQYENARV 182 (292)
Q Consensus 105 ~l~qtq~~lgd~F~~Ls~kEp--eL~~eF~~naetqr~m~k~G~~Ll~aL~~f~sdl~Tf~~KAI~DTllTIkkYE~AR~ 182 (292)
++++||++|||+||+||++|| +++++|++||++||+|++||++|+++|+||++||+||+|||||||++|||+|++|||
T Consensus 34 ~l~qtqk~~Gd~Fa~l~~re~~p~l~eeF~~~ae~hR~l~k~G~~ll~ai~~~~s~l~T~l~KaipDT~lTikkY~~ar~ 113 (215)
T cd07659 34 ALSQTHKEFGDLFANIGVREPQPAASEAFTKFGEAHRSIEKFGIELLKTLKPMLSDLGTYLNKAIPDTKLTIKKYADVKF 113 (215)
T ss_pred HHHHHHHHHHHHHHHHHccCCChhHHHHHHHhHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHhhCchHHHHHHHHHHHHH
Confidence 899999999999999999977 799999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhhHHHhhccccCccc---ccchHHHHH-------HHHHHHHHHHHhHHhHHHHHHhhhcccchhHHHHHHHHHH
Q psy5190 183 EYDAYRTDLELLLQVTSNVDS---NCSHLDEAQ-------RNFQTHRENFEKLRNDVVVKLRFLDENRIKVMHKQLLLFH 252 (292)
Q Consensus 183 EYdAyrl~leem~~e~~~~~~---~l~r~etaq-------r~~q~aK~rFdKLR~DV~vKLdLLdenRvkvm~~QL~~~~ 252 (292)
||||||+++|||++|+.++++ ++|||++|+ ||+|.+|+||+|||+||++||+|||+|||+||++||++||
T Consensus 114 EY~ayc~kvkEmd~ee~~~~~~~e~l~rvetgnyeyrl~lRcrq~~r~kf~kLR~DV~vKlelLe~k~vk~i~~QL~~f~ 193 (215)
T cd07659 114 EYLSYCLKVKEMDDEEYSYAALDEPLYRVETGNYEYRLILRCRQEARARFAKLRQDVLEKLELLDQKHVQDIVFQLQRFV 193 (215)
T ss_pred HHHHHHHHHHHhcccccccccccCcHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 999999999999999988553 999999984 7999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCHHHHHHHhhhccc
Q psy5190 253 NAISAYFSGNEPGLQATLKQFNI 275 (292)
Q Consensus 253 nAl~ay~sgn~~~Le~tl~~F~i 275 (292)
|||++||+||+++|+. .+.|||
T Consensus 194 ~aisay~~~~~~~~~~-~~~~pi 215 (215)
T cd07659 194 SALSEYHSDCHELLKE-PDLFPI 215 (215)
T ss_pred HHHHHHHHHHHHHhcC-CCcCCC
Confidence 9999999999999996 488886
No 6
>cd07661 BAR_ICA69 The Bin/Amphiphysin/Rvs (BAR) domain of Islet Cell Autoantigen 69-kDa. The BAR domain of Arfaptin-like proteins, also called the Arfaptin domain, is a dimerization and lipid binding module that can detect and drive membrane curvature. Islet cell autoantigen 69-kDa (ICA69) is a diabetes-associated autoantigen that is highly expressed in brain and beta cells. It is involved in membrane trafficking at the Golgi complex in neurosecretory cells. It is coexpressed with Protein Interacting with C Kinase 1 (PICK1), also a the BAR domain containing protein, in many tissues at different developmental stages. In neurons, ICA69 colocalizes with PICK1 in cell bodies and dendrites but is absent in synapses where PICK1 is enriched. ICA69 contains an N-terminal BAR domain and a conserved C-terminal domain of unknown function. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. ICA69 associate
Probab=100.00 E-value=6.3e-52 Score=370.02 Aligned_cols=176 Identities=20% Similarity=0.312 Sum_probs=166.8
Q ss_pred chhhhHHH--H----------------------HHHHHHHHHHHHHHHHhhcChhhHHHHhhchhhhhhhhHhhHHHHHh
Q psy5190 96 DSDLKSRV--L----------------------VIFFLQQTLGEAFADLAQKSPELQEEFLCNSETQRNLTGTGEILLNA 151 (292)
Q Consensus 96 D~ELeakI--l----------------------~l~qtq~~lgd~F~~Ls~kEpeL~~eF~~naetqr~m~k~G~~Ll~a 151 (292)
|+|||+|| | .++|+|+.||+.|.++|.++|+++ |..+++++|.++++|++++.+
T Consensus 1 D~ELdakielfrsvq~t~~~Llk~i~~yq~~l~~lsq~e~~LG~fl~e~~~~d~t~a--g~~m~~t~KaL~~sg~qrl~~ 78 (204)
T cd07661 1 DAELDAKLELFRSVQDTCLELLKIIDNYQERLCILSQEENVLGKFLKEQGKIDKTTA--GKMMAATGKALSFSSQQRLAL 78 (204)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhh--ccHHHHHHHHHHHhHHHHHHH
Confidence 89999999 1 699999999999999999999988 999999999999999998877
Q ss_pred ---HHHHHHhHHHhhhhhhhhHHHHHHHHHHhhHhHHHHHhhHHHhhccccC-cccccchHHHHHHHHHHHHHHHHhHHh
Q psy5190 152 ---LNLFVSSVNTLCNKTIEDTLVTVRQYENARVEYDAYRTDLELLLQVTSN-VDSNCSHLDEAQRNFQTHRENFEKLRN 227 (292)
Q Consensus 152 ---L~~f~sdl~Tf~~KAI~DTllTIkkYE~AR~EYdAyrl~leem~~e~~~-~~~~l~r~etaqr~~q~aK~rFdKLR~ 227 (292)
|+||+++|+||++|||+||++||++||.||+||||||+|||+.+.+.++ ++..++||+++|++|+.+|++|||||+
T Consensus 79 r~pl~~f~~~v~Tf~~rai~Dtl~Ti~~~E~aR~EY~a~~~~mk~~s~eldP~~~~~l~kfr~aQ~qvr~~K~kfdkLk~ 158 (204)
T cd07661 79 RVPLLRLYQEVETFRERAIADTLQTIQRMEKCRTEYRAALLWMKSVSQELDPDTYKQLEKFRKAQAQVRSAKERFDKLKM 158 (204)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhhcCCccchhHHHHHHHHHHHHHHHHHHHHHhH
Confidence 9999999999999999999999999999999999999999999977643 466999999999999999999999999
Q ss_pred HHHHHHhhhcccchhHHHHHHHHHHHHHHHHHhcCHHHHHHHhhhc
Q psy5190 228 DVVVKLRFLDENRIKVMHKQLLLFHNAISAYFSGNEPGLQATLKQF 273 (292)
Q Consensus 228 DV~vKLdLLdenRvkvm~~QL~~~~nAl~ay~sgn~~~Le~tl~~F 273 (292)
||+||||||++||||||||||++|||||.+||++++.+|+.+.+.|
T Consensus 159 Dv~qKvdlL~asR~n~ls~~L~~yqnal~~y~~kt~~~~~~i~~~~ 204 (204)
T cd07661 159 DVCQKVDLLGASRCNLLSHALVTYQNTLLQFWEKTSRTMATIHEAF 204 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999999999999999987765
No 7
>KOG3651|consensus
Probab=100.00 E-value=1.5e-48 Score=367.67 Aligned_cols=173 Identities=22% Similarity=0.372 Sum_probs=168.5
Q ss_pred HHHHHHHHHHHHHHHHhhcChh--hHHHHhhchhhhhhhhHhhHHHHHhHHHHHHhHHHhhhhhhhhHHHHHHHHHHhhH
Q psy5190 105 VIFFLQQTLGEAFADLAQKSPE--LQEEFLCNSETQRNLTGTGEILLNALNLFVSSVNTLCNKTIEDTLVTVRQYENARV 182 (292)
Q Consensus 105 ~l~qtq~~lgd~F~~Ls~kEpe--L~~eF~~naetqr~m~k~G~~Ll~aL~~f~sdl~Tf~~KAI~DTllTIkkYE~AR~ 182 (292)
+++|||++|||+||+||++||+ ++++|+.||+.||+++|.|..++++++++++||+||+|||||||++|||+|.+++|
T Consensus 164 ~lsqt~k~FGd~F~~i~vhEpQq~AsEAF~~Fgd~HR~ieK~g~~~~k~ikpmlsDL~tYlnkaiPDTrLTikkYlDvKf 243 (429)
T KOG3651|consen 164 KLSQTQKEFGDIFCDIAVHEPQQTASEAFSSFGDKHRMIEKKGSESAKPIKPMLSDLQTYLNKAIPDTRLTIKKYLDVKF 243 (429)
T ss_pred HHHHHHHHhhhhhhhhhccCcchhHHHHHHHHHHHHHHHHHhccchhhhhhHHHHHHHHHHhccCCcchhhhHHhhhhhH
Confidence 7999999999999999999998 99999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhhHHHhhccccCccc---ccchHHHH-------HHHHHHHHHHHHhHHhHHHHHHhhhcccchhHHHHHHHHHH
Q psy5190 183 EYDAYRTDLELLLQVTSNVDS---NCSHLDEA-------QRNFQTHRENFEKLRNDVVVKLRFLDENRIKVMHKQLLLFH 252 (292)
Q Consensus 183 EYdAyrl~leem~~e~~~~~~---~l~r~eta-------qr~~q~aK~rFdKLR~DV~vKLdLLdenRvkvm~~QL~~~~ 252 (292)
||++||+++|||++|+.++.+ |||||+|| +||+|++|+||.|||.||++||+|||++||+++.+||..|.
T Consensus 244 eYLSYCLKvKEMDDEE~~f~AlqEPLYRVeTGNYEYRliLRCRQeaRarF~kmR~DVleKmELLdqKHv~Di~~qL~~l~ 323 (429)
T KOG3651|consen 244 EYLSYCLKVKEMDDEEVEFVALQEPLYRVETGNYEYRLILRCRQEARARFMKMRDDVLEKMELLDQKHVRDIAQQLAILA 323 (429)
T ss_pred HHHHHHHhhhhccchhhceeeecCceeEeecCCeeeehhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 999999999999999988654 99999998 79999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCHHHHHHHhhhcccccc
Q psy5190 253 NAISAYFSGNEPGLQATLKQFNIKTN 278 (292)
Q Consensus 253 nAl~ay~sgn~~~Le~tl~~F~i~~~ 278 (292)
.+|+.|+..|++.|.... .|||+||
T Consensus 324 ~tmak~~~~c~~~L~~~~-~fPIEvD 348 (429)
T KOG3651|consen 324 KTMAKCQQECAEILKERI-DFPIEVD 348 (429)
T ss_pred HHHHHHHHHHHHHHhcCC-CCceEee
Confidence 999999999999999975 9999998
No 8
>KOG3891|consensus
Probab=100.00 E-value=2.2e-45 Score=349.45 Aligned_cols=209 Identities=22% Similarity=0.296 Sum_probs=189.9
Q ss_pred hhhhcccchhHHHHHHHHHHhCCCC----ccCchhhhHHH----------HHHHHHHHHHHHHHHHHhhcChhhHHHHhh
Q psy5190 68 SIKNWGISTYKCTRQIMYEKLGKST----RTVDSDLKSRV----------LVIFFLQQTLGEAFADLAQKSPELQEEFLC 133 (292)
Q Consensus 68 ~~k~W~~~tyk~TKQ~l~EklGk~~----~TvD~ELeakI----------l~l~qtq~~lgd~F~~Ls~kEpeL~~eF~~ 133 (292)
++++=-..+||.|||+|++++||++ +++|+|||++| |+|++....|+.++|.|+++|++|+..+..
T Consensus 17 svvn~mQ~kyW~tkqv~~k~~GkKEDeHlvaSDaeLDaklelf~Si~~T~l~L~kiId~Yq~rl~~lSqeenvlGkfLke 96 (436)
T KOG3891|consen 17 SVVNKMQQKYWETKQVFIKATGKKEDEHLVASDAELDAKLELFHSIQRTCLDLLKIIDLYQKRLCDLSQEENVLGKFLKE 96 (436)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCccchhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455899999999999999999 59999999999 489999999999999999999999974443
Q ss_pred ch-----hhhhhhhHhh----------HHHHHhHHHHHHhHHHhhhhhhhhHHHHHHHHHHhhHhHHHHHhhHHHhhccc
Q psy5190 134 NS-----ETQRNLTGTG----------EILLNALNLFVSSVNTLCNKTIEDTLVTVRQYENARVEYDAYRTDLELLLQVT 198 (292)
Q Consensus 134 na-----etqr~m~k~G----------~~Ll~aL~~f~sdl~Tf~~KAI~DTllTIkkYE~AR~EYdAyrl~leem~~e~ 198 (292)
.| ++.++|.+.| ..|+.||.+|+++|.||+.|||.||++||++||++|+||||+++|||.+++|.
T Consensus 97 qgkrdkT~agkmm~atgkal~fssqqrla~r~pl~r~~~ev~vF~~RAI~Dt~qTi~~meq~RTEYRgaLlWMK~~SqEL 176 (436)
T KOG3891|consen 97 QGKRDKTEAGKMMIATGKALCFSSQQRLALRIPLSRFYQEVSVFRERAISDTSQTINRMEQCRTEYRGALLWMKDVSQEL 176 (436)
T ss_pred hccchhhhhhhHHHHHhHHhhhhHHHHHHHhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhHhhc
Confidence 33 3457777655 57779999999999999999999999999999999999999999999999998
Q ss_pred cC-cccccchHHHHHHHHHHHHHHHHhHHhHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHhcCHHHHHHHhhhcccc
Q psy5190 199 SN-VDSNCSHLDEAQRNFQTHRENFEKLRNDVVVKLRFLDENRIKVMHKQLLLFHNAISAYFSGNEPGLQATLKQFNIK 276 (292)
Q Consensus 199 ~~-~~~~l~r~etaqr~~q~aK~rFdKLR~DV~vKLdLLdenRvkvm~~QL~~~~nAl~ay~sgn~~~Le~tl~~F~i~ 276 (292)
++ +..+++|||+||.+|+.+|++||+|+.|||||||||.++|||+++|.|..||+.+..||++++.+++++.+-+.+.
T Consensus 177 DPdt~k~meKFRkaQt~Vr~aK~nfDklkmD~~QKVDLL~AsRcNllSh~Lt~YqteL~~f~~Kta~tf~ti~ea~~~y 255 (436)
T KOG3891|consen 177 DPDTDKQMEKFRKAQTQVRSAKENFDKLKMDVCQKVDLLGASRCNLLSHVLTTYQTELLEFWSKTARTFETIHEACIGY 255 (436)
T ss_pred CcchhhHHHHHHHHHHHHHHHHhccchhhhHHHHHHhHhhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 64 5679999999999999999999999999999999999999999999999999999999999999999998877665
No 9
>smart00721 BAR BAR domain.
Probab=99.68 E-value=8.1e-15 Score=129.34 Aligned_cols=195 Identities=18% Similarity=0.247 Sum_probs=157.6
Q ss_pred chhHHHHHHHHHHhCCCCccC-chhhhHHH--H-------------------------HHHHHHHHHHHHHHHHhhcChh
Q psy5190 75 STYKCTRQIMYEKLGKSTRTV-DSDLKSRV--L-------------------------VIFFLQQTLGEAFADLAQKSPE 126 (292)
Q Consensus 75 ~tyk~TKQ~l~EklGk~~~Tv-D~ELeakI--l-------------------------~l~qtq~~lgd~F~~Ls~kEpe 126 (292)
+++.-++|.+.+++|++++|. |.|++.-. | ....++..+++.++++.... +
T Consensus 4 K~~~R~~q~~~ek~G~~e~T~~D~~f~~le~~~~~~~~~~~kl~k~~~~y~q~~~~~~~~~~~~~~~~~~l~~~~~~~-~ 82 (239)
T smart00721 4 KQFNRAKQKVGEKVGKAEKTKLDEDFEELERRFDTTEAEIEKLQKDTKLYLQPNPAVRAKLASQKKLSKSLGEVYEGG-D 82 (239)
T ss_pred chhHHHHHHHHHHhCCCCcCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHhcCC-C
Confidence 458889999999999999999 98887666 1 35556667777777774321 1
Q ss_pred hHHHHhhchhhhhhhhHhhHHHHHh----------HHHHHHhHHHhhhhhhhhHHHHHHHHHHhhHhHHHHHhhHHHhhc
Q psy5190 127 LQEEFLCNSETQRNLTGTGEILLNA----------LNLFVSSVNTLCNKTIEDTLVTVRQYENARVEYDAYRTDLELLLQ 196 (292)
Q Consensus 127 L~~eF~~naetqr~m~k~G~~Ll~a----------L~~f~sdl~Tf~~KAI~DTllTIkkYE~AR~EYdAyrl~leem~~ 196 (292)
.+..|..+...+..|...|..+..- ...|+..+.++++..|++...+|++++.+|++||+++..++.+..
T Consensus 83 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~kk~~~~~lDyD~~~~kl~~~~~ 162 (239)
T smart00721 83 DGEGLGADSSYGKALDKLGEALKKLLQVEESLSQVKRTFILPLLNFLLGEFKEIKKARKKLERKLLDYDSARHKLKKAKK 162 (239)
T ss_pred CccccCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 2334444444555555555544433 448899999999999999999999999999999999999998875
Q ss_pred cccCcccccchHHHHHHHHHHHHHHHHhHHhHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHhcCHHHHHHHhhh
Q psy5190 197 VTSNVDSNCSHLDEAQRNFQTHRENFEKLRNDVVVKLRFLDENRIKVMHKQLLLFHNAISAYFSGNEPGLQATLKQ 272 (292)
Q Consensus 197 e~~~~~~~l~r~etaqr~~q~aK~rFdKLR~DV~vKLdLLdenRvkvm~~QL~~~~nAl~ay~sgn~~~Le~tl~~ 272 (292)
...... . .++..+...++.||.+|+.++.++...|--|.+++...+...|..|..|-..||..+++.|++...+
T Consensus 163 ~~~~~~-~-~kl~~~e~el~~ak~~fe~~~~~l~~~l~~l~~~~~~~~~~~l~~~~~aq~~y~~~~~~~l~~l~~~ 236 (239)
T smart00721 163 SKEKKK-D-EKLAKAEEELRKAKQEFEESNAQLVEELPQLVASRVDFFVNCLQALIEAQLNFHRESYKLLQQLQQQ 236 (239)
T ss_pred hccCCh-h-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 543211 2 2889999999999999999999999999999999999999999999999999999999999987654
No 10
>cd07307 BAR The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Mutations in BAR containing proteins have been linked to diseases and their inactivation in cells leads to altered membrane dynamics. A BAR domain with an additional N-terminal amphipathic helix (an N-BAR) can drive membrane curvature. These N-BAR domains are found in amphiphysins and endophilins, among others. BAR domains are also frequently found alongside domains that determine lipid specificity, such as the Pleckstrin Homology (PH) and Phox Homology (PX) domains which are present in beta centaurins (ACAPs and ASAPs) and sorting nexins, respectively. A FES-CIP4 Homology (FCH) domain together with a coiled coil region is called the F-
Probab=99.63 E-value=5.1e-14 Score=116.87 Aligned_cols=161 Identities=25% Similarity=0.377 Sum_probs=146.3
Q ss_pred HHHHHHHHHHHHHHHHhhcChh-----hHHHHhhchhhhhhhhHhhHHHHHhH-HHHHHhHHHhhhhhhhhHHHHHHHHH
Q psy5190 105 VIFFLQQTLGEAFADLAQKSPE-----LQEEFLCNSETQRNLTGTGEILLNAL-NLFVSSVNTLCNKTIEDTLVTVRQYE 178 (292)
Q Consensus 105 ~l~qtq~~lgd~F~~Ls~kEpe-----L~~eF~~naetqr~m~k~G~~Ll~aL-~~f~sdl~Tf~~KAI~DTllTIkkYE 178 (292)
++...+..||+.|..+|...+. ++..+..++++++.+......+...+ ..|+.-|..|++..|.+...++++|+
T Consensus 25 ~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~v~~pL~~~~~~~~~~~~~~~k~~~ 104 (194)
T cd07307 25 ELPAAAEKLSEALQELGKELPDLSNTDLGEALEKFGKIQKELEEFRDQLEQKLENKVIEPLKEYLKKDLKEIKKRRKKLD 104 (194)
T ss_pred HHHHHHHHHHHHHHHHhccCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667899999999999998875 57899999999999999999999876 55789999999999999999999999
Q ss_pred HhhHhHHHHHhhHHHhhccccCcccccchHHHHHHHHHHHHHHHHhHHhHHHHHHhhhcccchhHHHHHHHHHHHHHHHH
Q psy5190 179 NARVEYDAYRTDLELLLQVTSNVDSNCSHLDEAQRNFQTHRENFEKLRNDVVVKLRFLDENRIKVMHKQLLLFHNAISAY 258 (292)
Q Consensus 179 ~AR~EYdAyrl~leem~~e~~~~~~~l~r~etaqr~~q~aK~rFdKLR~DV~vKLdLLdenRvkvm~~QL~~~~nAl~ay 258 (292)
++|.+|++++.+++.+..... ...++..++.+++.+|.+|+.++.|++..|..|.+.+...+...|..|.++...|
T Consensus 105 ~~~~~yd~~~~k~~~~~~~~~----~~~~l~~~~~~~~~ar~~y~~~~~~~~~~l~~~~~~~~~~~~~~L~~~~~~q~~~ 180 (194)
T cd07307 105 KARLDYDAAREKLKKLRKKKK----DSSKLAEAEEELQEAKEKYEELREELIEDLNKLEEKRKELFLSLLLSFIEAQSEF 180 (194)
T ss_pred HHHHHHHHHHHHHHHHhhccC----ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 999999999999999875542 2257788999999999999999999999999999999999999999999999999
Q ss_pred HhcCHHHHHHH
Q psy5190 259 FSGNEPGLQAT 269 (292)
Q Consensus 259 ~sgn~~~Le~t 269 (292)
|..+.+.++..
T Consensus 181 ~~~~~~~~~~l 191 (194)
T cd07307 181 FKEVLKILEQL 191 (194)
T ss_pred HHhHHHHHHhh
Confidence 99999987764
No 11
>PF03114 BAR: BAR domain; InterPro: IPR004148 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. ; GO: 0005515 protein binding, 0005737 cytoplasm; PDB: 4AVM_A 2D4C_C 1X03_A 1X04_A 2RND_A 2RMY_A 2FIC_A 2C08_A 2Z0V_A 3SOG_A ....
Probab=99.47 E-value=7.6e-12 Score=107.52 Aligned_cols=189 Identities=21% Similarity=0.296 Sum_probs=158.1
Q ss_pred chhHHHHHHHHHHhCCCCccC-chhhhHHH------------H------------HHHHHHH-------HHHHHHHHHhh
Q psy5190 75 STYKCTRQIMYEKLGKSTRTV-DSDLKSRV------------L------------VIFFLQQ-------TLGEAFADLAQ 122 (292)
Q Consensus 75 ~tyk~TKQ~l~EklGk~~~Tv-D~ELeakI------------l------------~l~qtq~-------~lgd~F~~Ls~ 122 (292)
+.+.-++|.+.+++|.++.|. |.+++.-. | .+...+. .||++|.+++.
T Consensus 3 K~~~R~~q~~~~k~g~~~~t~~D~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 82 (229)
T PF03114_consen 3 KKINRAKQRVKQKLGKSEKTEIDEEFEELEEKFKQLEESIKKLQKSLKKYLDSIKKLSASQKNMKSPFEELADALIELGS 82 (229)
T ss_dssp HHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhHHHHHHHHHHHHHhc
Confidence 346778999999999999998 99988776 1 4666666 89999999988
Q ss_pred cChh---hHHHHhhchhhhhhhhHhhHHHHHhHHH-HHHhHHHhhhhhhhhHHHHHHHHHHhhHhHHHHHhhHHHhhccc
Q psy5190 123 KSPE---LQEEFLCNSETQRNLTGTGEILLNALNL-FVSSVNTLCNKTIEDTLVTVRQYENARVEYDAYRTDLELLLQVT 198 (292)
Q Consensus 123 kEpe---L~~eF~~naetqr~m~k~G~~Ll~aL~~-f~sdl~Tf~~KAI~DTllTIkkYE~AR~EYdAyrl~leem~~e~ 198 (292)
..+. ++..+..+++++..+...-..+...+.. ++.-|..|+ .-+++...-++++++.|.+||+|+..++.+....
T Consensus 83 ~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~vi~pl~~~~-~~~~~i~~~~kkr~~~~ldyd~~~~k~~k~~~~~ 161 (229)
T PF03114_consen 83 EFSDDSSLGNALEKFGEAMQEIEEARKELESQIESTVIDPLKEFL-KEFKEIKKLIKKREKKRLDYDSARSKLEKLRKKK 161 (229)
T ss_dssp CTSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTS
T ss_pred cccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 6543 6677888888888776665566665544 778888888 8899999999999999999999999999987544
Q ss_pred cCcccccchHHHHHHHHHHHHHHHHhHHhHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHhcCHHHHHHHhhh
Q psy5190 199 SNVDSNCSHLDEAQRNFQTHRENFEKLRNDVVVKLRFLDENRIKVMHKQLLLFHNAISAYFSGNEPGLQATLKQ 272 (292)
Q Consensus 199 ~~~~~~l~r~etaqr~~q~aK~rFdKLR~DV~vKLdLLdenRvkvm~~QL~~~~nAl~ay~sgn~~~Le~tl~~ 272 (292)
.... + .+.++.++..|+.+..++...|..|-+.+...+...|..|..+-..||..+++.|+....+
T Consensus 162 ~~~~----~----~~~l~~a~~~f~~~~~~l~~~l~~l~~~~~~~l~~~l~~~i~~q~~~~~~~~~~l~~l~~~ 227 (229)
T PF03114_consen 162 SKSS----K----EEKLEEAKEEFEALNEELKEELPKLFAKRQDILEPCLQSFIEAQLQYFQQLYQILEELQPQ 227 (229)
T ss_dssp SBTH----H----HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccc----c----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3211 1 7889999999999999999999999999999999999999999999999999999987544
No 12
>cd07616 BAR_Endophilin_B1 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle. Endophilin-B1, also called Bax-interacting factor 1 (Bif-1) or SH3GLB1 (SH3-domain GRB2-like endophilin B1), is localized mainly to the Golgi apparatus. It is involved in the regulation of many biological events including autophagy, tumorigenesis, nerve growth fact
Probab=98.85 E-value=1.8e-07 Score=86.44 Aligned_cols=154 Identities=14% Similarity=0.182 Sum_probs=118.7
Q ss_pred HHHHHHHHHHHHhhcCh---hhHHHHhhchhhhhhhhHhhHHHHHhHH-HHHHhHHHhhhhhhhhHHHHHHHHHHhhHhH
Q psy5190 109 LQQTLGEAFADLAQKSP---ELQEEFLCNSETQRNLTGTGEILLNALN-LFVSSVNTLCNKTIEDTLVTVRQYENARVEY 184 (292)
Q Consensus 109 tq~~lgd~F~~Ls~kEp---eL~~eF~~naetqr~m~k~G~~Ll~aL~-~f~sdl~Tf~~KAI~DTllTIkkYE~AR~EY 184 (292)
....||+++-..|..=. .++..+...|++++-|..-...+...++ .|+.-|.++++.-|.+...-=|+-|..|+.|
T Consensus 70 ~~~~Lg~~M~~~g~~~g~~S~~G~aL~~~g~a~~kia~~~~~~i~~~~~~Fl~PL~~~le~dik~i~k~RKkLe~rRLdy 149 (229)
T cd07616 70 NPELLGQYMIDAGNEFGPGTAYGNALIKCGETQKQIGTADRELIQTSAINFLTPLRNFIEGDYKTITKERKLLQNKRLDL 149 (229)
T ss_pred hHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34568888887777322 3888888999998888887777776544 5999999999999999999999999999999
Q ss_pred HHHHhhHHHhhccccCcccccchHHHHHHHHHHHHHHHHhHHhHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHhcCHH
Q psy5190 185 DAYRTDLELLLQVTSNVDSNCSHLDEAQRNFQTHRENFEKLRNDVVVKLRFLDENRIKVMHKQLLLFHNAISAYFSGNEP 264 (292)
Q Consensus 185 dAyrl~leem~~e~~~~~~~l~r~etaqr~~q~aK~rFdKLR~DV~vKLdLLdenRvkvm~~QL~~~~nAl~ay~sgn~~ 264 (292)
|+.+..++..+.+... .. +...++.++++|+.=..|+..-++-+.++.++- ..+|..|..|-+.||..|++
T Consensus 150 D~~K~r~~kAk~~~~~-~~-------~e~elr~ae~efees~E~a~~~m~~i~~~~~e~-~~~L~~lv~AQl~Yh~~~~e 220 (229)
T cd07616 150 DAAKTRLKKAKVAEAR-AA-------AEQELRITQSEFDRQAEITRLLLEGISSTHAHH-LRCLNDFVEAQMTYYAQCYQ 220 (229)
T ss_pred HHHHHHHhcCCcchhh-cc-------hHHHHHHHHHHHHHHHHHHHHHHHhhhhcChHH-HHHHHHHHHHHHHHHHHHHH
Confidence 9999998765432221 00 244566677777777777777776666666644 46899999999999999999
Q ss_pred HHHHHhh
Q psy5190 265 GLQATLK 271 (292)
Q Consensus 265 ~Le~tl~ 271 (292)
.|+...+
T Consensus 221 ~L~~L~~ 227 (229)
T cd07616 221 YMLDLQK 227 (229)
T ss_pred HHHHHHh
Confidence 9988644
No 13
>cd07617 BAR_Endophilin_B2 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain two endophilin-B isoforms. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle. Endophilin-B2, also called SH3GLB2 (SH3-domain GRB2-like endophilin B2), is a cytoplasmic protein that interacts with the apoptosis inducer Bax. It is overexpressed in prostate cancer metastasis and has been identified
Probab=98.68 E-value=1.1e-06 Score=80.75 Aligned_cols=144 Identities=15% Similarity=0.224 Sum_probs=107.8
Q ss_pred HHHHHHHHHHHhhcCh---hhHHHHhhchhhhhhhhHhhHHHH-HhHHHHHHhHHHhhhhhhhhHHHHHHHHHHhhHhHH
Q psy5190 110 QQTLGEAFADLAQKSP---ELQEEFLCNSETQRNLTGTGEILL-NALNLFVSSVNTLCNKTIEDTLVTVRQYENARVEYD 185 (292)
Q Consensus 110 q~~lgd~F~~Ls~kEp---eL~~eF~~naetqr~m~k~G~~Ll-~aL~~f~sdl~Tf~~KAI~DTllTIkkYE~AR~EYd 185 (292)
...||+++-..|..=. .++.++...|++++-|......+. ..=..|+.-+++|+++-|.+...--|+.|..|+.||
T Consensus 71 ~~~Lg~~M~~~g~~~g~~s~~G~aL~~~g~a~~~ia~~~~~~~~~v~~~fl~pL~~~l~~dlk~i~k~RKkLe~rRLd~D 150 (220)
T cd07617 71 AELLGQYMTEAANDFGPGTPYGKTLIKVGETQKRLGAAERDFIHTSSINFLTPLRNFLEGDWKTISKERRLLQNRRLDLD 150 (220)
T ss_pred HHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4568887777766322 388888888888888877666655 344679999999999999999999999999999999
Q ss_pred HHHhhHHHhhccccCcccccchHHHHHHHHHHHHHHHHhHHhHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHhcCHHH
Q psy5190 186 AYRTDLELLLQVTSNVDSNCSHLDEAQRNFQTHRENFEKLRNDVVVKLRFLDENRIKVMHKQLLLFHNAISAYFSGNEPG 265 (292)
Q Consensus 186 Ayrl~leem~~e~~~~~~~l~r~etaqr~~q~aK~rFdKLR~DV~vKLdLLdenRvkvm~~QL~~~~nAl~ay~sgn~~~ 265 (292)
+.+..++.. ...++.|+++|+.=....-.-|+=+-++.+.-+ .+|..|..|-+.||..|++.
T Consensus 151 ~~K~r~~ka-----------------e~elr~A~~kf~~~~E~a~~~M~~il~~~~e~l-~~L~~lv~AQl~Yh~q~~e~ 212 (220)
T cd07617 151 ACKARLKKA-----------------EHELRVAQTEFDRQAEVTRLLLEGISSTHVNHL-RCLHEFVEAQATYYAQCYRH 212 (220)
T ss_pred HHHHHHhcc-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 999987652 124555566666654433333555555655444 57999999999999999999
Q ss_pred HHHHhh
Q psy5190 266 LQATLK 271 (292)
Q Consensus 266 Le~tl~ 271 (292)
|+....
T Consensus 213 L~~l~~ 218 (220)
T cd07617 213 MLDLQK 218 (220)
T ss_pred HHHHHh
Confidence 988643
No 14
>cd07594 BAR_Endophilin_B The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain two endophilin-B isoforms. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle.
Probab=98.66 E-value=3.5e-06 Score=77.76 Aligned_cols=152 Identities=13% Similarity=0.226 Sum_probs=119.9
Q ss_pred HHHHHHHHHHhhcCh---hhHHHHhhchhhhhhhhHhhHHHH-HhHHHHHHhHHHhhhhhhhhHHHHHHHHHHhhHhHHH
Q psy5190 111 QTLGEAFADLAQKSP---ELQEEFLCNSETQRNLTGTGEILL-NALNLFVSSVNTLCNKTIEDTLVTVRQYENARVEYDA 186 (292)
Q Consensus 111 ~~lgd~F~~Ls~kEp---eL~~eF~~naetqr~m~k~G~~Ll-~aL~~f~sdl~Tf~~KAI~DTllTIkkYE~AR~EYdA 186 (292)
..||++|-+.|..=. .++..+..+|++++-+..-...+. ..-..|+.-|++|++.-|.+...-=|+.|+.|+.||+
T Consensus 72 e~Lg~~M~~~g~~lg~~S~~g~aL~~~g~a~~kia~~~~~~~~~i~~~fl~pL~~~l~~dik~i~k~RKkLe~rRLd~D~ 151 (229)
T cd07594 72 EQLGQAMIEAGNDFGPGTAYGSALIKVGQAQKKLGQAEREFIQTSSSNFLQPLRNFLEGDMKTISKERKLLENKRLDLDA 151 (229)
T ss_pred HHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367888877776332 388888888888877776665555 4466799999999999999999999999999999999
Q ss_pred HHhhHHHhhccccCcccccchHHHHHHHHHHHHHHHHhHHhHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHhcCHHHH
Q psy5190 187 YRTDLELLLQVTSNVDSNCSHLDEAQRNFQTHRENFEKLRNDVVVKLRFLDENRIKVMHKQLLLFHNAISAYFSGNEPGL 266 (292)
Q Consensus 187 yrl~leem~~e~~~~~~~l~r~etaqr~~q~aK~rFdKLR~DV~vKLdLLdenRvkvm~~QL~~~~nAl~ay~sgn~~~L 266 (292)
.+..++..+.+. +...+...++.|+++|++=..|+..-|.=+-++.+.-+ .+|.-|..|-+.||..|++.|
T Consensus 152 ~k~r~~kAk~~~--------~~~~~e~elr~Ae~kF~~~~E~a~~~M~~i~~~~~~~~-~~L~~lv~AQl~Yh~q~~e~L 222 (229)
T cd07594 152 CKTRVKKAKSAE--------AIEQAEQDLRVAQSEFDRQAEITKLLLEGISSTHANHL-RCLRDFVEAQMTYYAQCYQYM 222 (229)
T ss_pred HHHHHhhcCCcc--------chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 999987653221 22345667888999999999999888886666665443 579999999999999999999
Q ss_pred HHHhh
Q psy5190 267 QATLK 271 (292)
Q Consensus 267 e~tl~ 271 (292)
+....
T Consensus 223 ~~l~~ 227 (229)
T cd07594 223 DDLQR 227 (229)
T ss_pred HHHHh
Confidence 98644
No 15
>cd07588 BAR_Amphiphysin The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Amphiphysins function primarily in endocytosis and other membrane remodeling events. They contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. This subfamily is composed of different isoforms of amphiphysin and Bridging integrator 2 (Bin2). Amphiphysin I proteins, enriched in the brain and nervous system, contain domains that bind clathrin, Adaptor Protein complex 2 (AP2), dynamin and synaptojanin. They function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (Bin1), are localized in many different tissues and may function in intracellular vesicle trafficking. In skeletal muscle, Bin1 plays a role in the organization and maintenance of th
Probab=98.60 E-value=6.6e-06 Score=75.07 Aligned_cols=176 Identities=20% Similarity=0.210 Sum_probs=130.9
Q ss_pred HHhCCCCccCchhhhHHH------------H------------HHHHHHHHHHHHHHHHhhcChhhHHHHhhchhhhhhh
Q psy5190 86 EKLGKSTRTVDSDLKSRV------------L------------VIFFLQQTLGEAFADLAQKSPELQEEFLCNSETQRNL 141 (292)
Q Consensus 86 EklGk~~~TvD~ELeakI------------l------------~l~qtq~~lgd~F~~Ls~kEpeL~~eF~~naetqr~m 141 (292)
+|+|+++.|+|.+.|.-. | .+...|..++++|++|=.......+.+..-. ..+
T Consensus 1 ~k~g~~~~T~D~~Fe~~e~~f~~~e~~~~kL~k~~K~Y~~av~~m~~~q~~~~e~l~~lY~p~~~~~~~~~~v~---e~~ 77 (211)
T cd07588 1 QKLGKADETRDEVFDEHVNNFNKQQASANRLQKDLKNYLNSVRAMKQASKTLSETLKELYEPDWPGREHLASIF---EQL 77 (211)
T ss_pred CCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccHHHHHHHH---HHH
Confidence 379999999999887766 1 5788888888888877654332333222211 112
Q ss_pred hHhhHHHHHhHH-HHHHhHHHhhhhhhhhHHHHHHHHHHhhHhHHHHHhhHHHhhccccCcccccchHHHHHHHHHHHHH
Q psy5190 142 TGTGEILLNALN-LFVSSVNTLCNKTIEDTLVTVRQYENARVEYDAYRTDLELLLQVTSNVDSNCSHLDEAQRNFQTHRE 220 (292)
Q Consensus 142 ~k~G~~Ll~aL~-~f~sdl~Tf~~KAI~DTllTIkkYE~AR~EYdAyrl~leem~~e~~~~~~~l~r~etaqr~~q~aK~ 220 (292)
......|-.+|. .++.=++.|+. -|++..-.|++=+..++.||+++..++.+.+-+.. -..++..|++.++.||.
T Consensus 78 d~~~~~l~~~l~~~Vl~Pl~~~~s-~f~~i~k~I~KR~~KllDYDr~r~~~~kL~~K~~k---de~KL~kae~el~~Ak~ 153 (211)
T cd07588 78 DLLWNDLEEKLSDQVLGPLTAYQS-QFPEVKKRIAKRGRKLVDYDSARHNLEALKAKKKV---DDQKLTKAEEELQQAKK 153 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhHHHhHHHHHHHHHHHHhcccc---cHhhHHHHHHHHHHHHH
Confidence 222222223332 44455555544 78899999999999999999999999999876652 23678889999999999
Q ss_pred HHHhHHhHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHhcCHHHHHH
Q psy5190 221 NFEKLRNDVVVKLRFLDENRIKVMHKQLLLFHNAISAYFSGNEPGLQA 268 (292)
Q Consensus 221 rFdKLR~DV~vKLdLLdenRvkvm~~QL~~~~nAl~ay~sgn~~~Le~ 268 (292)
.|+.|......=|=-|=..|+--+.--+..|.++=..||.........
T Consensus 154 ~Ye~lN~~L~~ELP~L~~~ri~f~~p~F~sl~~~q~~F~~e~~~~~~~ 201 (211)
T cd07588 154 VYEELNTELHEELPALYDSRIAFYVDTLQSIFAAESVFHKEIGKVNTK 201 (211)
T ss_pred HHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998888999999999999999999999999887775544
No 16
>cd07591 BAR_Rvs161p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 161 and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 161 (Rvs161p) and Schizosaccharomyces pombe Hob3 (homolog of Bin3). S. cerevisiae Rvs161p plays a role in regulating cell polarity, actin cytoskeleton polarization, vesicle trafficking, endocytosis, bud formation, and the mating response. It forms a heterodimer with another BAR domain protein Rvs167p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. S. pombe Hob3 is important in regulating filamentous actin localization an
Probab=98.41 E-value=3.4e-05 Score=70.60 Aligned_cols=118 Identities=16% Similarity=0.284 Sum_probs=102.6
Q ss_pred HHhHHHhhhhhhhhHHHHHHHHHHhhHhHHHHHhhHHHhhccccCcccccchHHHHHHHHHHHHHHHHhHHhHHHHHHhh
Q psy5190 156 VSSVNTLCNKTIEDTLVTVRQYENARVEYDAYRTDLELLLQVTSNVDSNCSHLDEAQRNFQTHRENFEKLRNDVVVKLRF 235 (292)
Q Consensus 156 ~sdl~Tf~~KAI~DTllTIkkYE~AR~EYdAyrl~leem~~e~~~~~~~l~r~etaqr~~q~aK~rFdKLR~DV~vKLdL 235 (292)
+.=+++|+ .-+++...+|++=+..+++||.++..++.+.+-+... -.++..+++.++.|++.|+.|=..+..=|=-
T Consensus 98 ~~Pl~~~~-~~~~~i~k~IkKR~~KllDYD~~~~k~~kl~~K~~kd---~~kL~kae~el~~a~~~Ye~lN~~Lk~ELP~ 173 (224)
T cd07591 98 LDPIGRFN-SYFPEINEAIKKRNHKLLDYDAARAKVRKLIDKPSED---PTKLPRAEKELDEAKEVYETLNDQLKTELPQ 173 (224)
T ss_pred HHHHHHHH-HHhhhHHHHHHHHHhhHhhHHHHHHHHHHHHhcccCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 33445554 4789999999999999999999999999987655431 2678889999999999999999999999999
Q ss_pred hcccchhHHHHHHHHHHHHHHHHHhcCHHHHHHHhhhccccc
Q psy5190 236 LDENRIKVMHKQLLLFHNAISAYFSGNEPGLQATLKQFNIKT 277 (292)
Q Consensus 236 LdenRvkvm~~QL~~~~nAl~ay~sgn~~~Le~tl~~F~i~~ 277 (292)
|-+.|+..+..-+..|...-..||...+..|.....-|+-.+
T Consensus 174 l~~~r~~~l~~~f~s~~~iQ~~~~~~~y~~l~~~~~~~~~~~ 215 (224)
T cd07591 174 LVDLRIPYLDPSFEAFVKIQLRFFTEGYERLAQVQRYLDAQT 215 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhh
Confidence 999999999999999999999999999999999988887544
No 17
>cd07637 BAR_ACAP3 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP3 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3), also called centaurin beta-5, is presumed to be an Arf GTPase activating protein (GAP) based on its similarity to the Arf6-specific GAPs ACAP1 and ACAP2. The specific function of ACAP3 is still unknown. ACAP3 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=98.37 E-value=6.5e-05 Score=68.04 Aligned_cols=166 Identities=14% Similarity=0.216 Sum_probs=139.4
Q ss_pred hhhhHHH--H------------HHHHHHHHHHHHHHHHhh---cChhhHHHHhhchhhhhhhhHhhHHHHHhHHH-HHHh
Q psy5190 97 SDLKSRV--L------------VIFFLQQTLGEAFADLAQ---KSPELQEEFLCNSETQRNLTGTGEILLNALNL-FVSS 158 (292)
Q Consensus 97 ~ELeakI--l------------~l~qtq~~lgd~F~~Ls~---kEpeL~~eF~~naetqr~m~k~G~~Ll~aL~~-f~sd 158 (292)
.|||.+| + ....+++.|+..+.+++. .+|.+.+.+..|+++-+-+......|+..+.. ++.-
T Consensus 12 ~~le~~l~kl~K~~~~~~d~g~~~~~a~~~F~~~l~d~~~~~~gd~~i~~~L~kF~~~l~ei~~~~~~l~~q~e~~l~~p 91 (200)
T cd07637 12 VEIEAKLDKLVKLCSGMIEAGKAYATTNKLFVSGIRDLSQQCKKDEMISECLDKFGDSLQEMVNYHMILFDQAQRSVRQQ 91 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788888 1 577788899988888776 44558889999999999888888888866655 4456
Q ss_pred HHHhhhhhhhhHHHHHHHHHHhhHhHHHHHhhHHHhhccccCcccccchHHHHHHHHHHHHHHHHhHHhHHHHHHhhhcc
Q psy5190 159 VNTLCNKTIEDTLVTVRQYENARVEYDAYRTDLELLLQVTSNVDSNCSHLDEAQRNFQTHRENFEKLRNDVVVKLRFLDE 238 (292)
Q Consensus 159 l~Tf~~KAI~DTllTIkkYE~AR~EYdAyrl~leem~~e~~~~~~~l~r~etaqr~~q~aK~rFdKLR~DV~vKLdLLde 238 (292)
|..|+..-|...+.+=|+|+.+.-.||+++.....++.. .| .-++++-..+..+|..|.+.+.|.+.++.-+.+
T Consensus 92 L~~F~k~dL~~~KE~rK~Fdk~se~yd~al~k~~~~k~k-----k~-~~l~Ea~~~L~~~Rk~f~~asLdyv~~ln~iq~ 165 (200)
T cd07637 92 LHSFVKEDVRKFKETKKQFDKVREDLEIALVKNAQAPRH-----KP-HEVEEATSTLTITRKCFRHLALDYVLQINVLQA 165 (200)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-----Ch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888999999999999999999999999999875443311 11 356888899999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHHHHHHHhcCHHHHHH
Q psy5190 239 NRIKVMHKQLLLFHNAISAYFSGNEPGLQA 268 (292)
Q Consensus 239 nRvkvm~~QL~~~~nAl~ay~sgn~~~Le~ 268 (292)
.|==.|..-|+.|..|...||..-++.+++
T Consensus 166 kKk~e~le~ll~~~~a~~tff~qG~el~~~ 195 (200)
T cd07637 166 KKKFEILDSMLSFMHAQYTFFQQGYSLLHE 195 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHh
Confidence 999999999999999999999988887766
No 18
>cd07600 BAR_Gvp36 The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Golgi vesicle protein of 36 kDa and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Proteomic analysis shows that Golgi vesicle protein of 36 kDa (Gvp36) may be involved in vesicular trafficking and nutritional adaptation. A Saccharomyces cerevisiae strain deficient in Gvp36 shows defects in growth, in actin cytoskeleton polarization, in endocytosis, in vacuolar biogenesis, and in the cell cycle. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=98.37 E-value=3.2e-05 Score=71.97 Aligned_cols=189 Identities=15% Similarity=0.142 Sum_probs=127.1
Q ss_pred hhhhhhcccchhHHHHHHHHHHhC-CCCccCchhhhHHH------------H--HHHHHHHHHHHHHHHHhh-cChhhHH
Q psy5190 66 IESIKNWGISTYKCTRQIMYEKLG-KSTRTVDSDLKSRV------------L--VIFFLQQTLGEAFADLAQ-KSPELQE 129 (292)
Q Consensus 66 ~~~~k~W~~~tyk~TKQ~l~EklG-k~~~TvD~ELeakI------------l--~l~qtq~~lgd~F~~Ls~-kEpeL~~ 129 (292)
-++|..||-+ |..|++ =+..|.-.|++.-+ | .|.++=..-|..|..+.. .+..|+.
T Consensus 36 ~es~~~~~~~--------~~~k~~~l~~~t~~~e~~~~l~~~~~~~~~pkTl~~aLs~~m~~~~~~l~~~~~~~~s~lg~ 107 (242)
T cd07600 36 TESISDFSKT--------IGSKVSELSKATSPTEAQKVLLGTPAPAKLPKTLNHALSRAALASSLELKSLEPEDEDPLSK 107 (242)
T ss_pred hHHHHHHHHh--------hHHHHHHHhhcCChhhhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHHhCccCCCCCCHHHH
Confidence 4677777754 444431 12345556666555 4 344444444444444322 1345999
Q ss_pred HHhhchhhhhhhhHhhHHHH-HhHHHHHHhHHHhhhhhhhhHHHHHHHHHHhhHhHHHHHhhHHHhhccccCcccccchH
Q psy5190 130 EFLCNSETQRNLTGTGEILL-NALNLFVSSVNTLCNKTIEDTLVTVRQYENARVEYDAYRTDLELLLQVTSNVDSNCSHL 208 (292)
Q Consensus 130 eF~~naetqr~m~k~G~~Ll-~aL~~f~sdl~Tf~~KAI~DTllTIkkYE~AR~EYdAyrl~leem~~e~~~~~~~l~r~ 208 (292)
.|...|+++.-|..-...+- ..-..|+.-|.+++++-|.....-=|+-|+.|+.||+.+..++........
T Consensus 108 aL~~~g~a~~kIa~ar~~~D~~I~~~Fl~pL~~~L~~d~k~i~k~RKkle~~RLd~D~~K~~~~ka~~~~k~-------- 179 (242)
T cd07600 108 ALGKYSDAEEKIAEARLEQDQLIQKEFNAKLRETLNTSFQKAHKARKKVEDKRLQLDTARAELKSAEPAEKQ-------- 179 (242)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc--------
Confidence 99999999887776433332 333889999999999999999999999999999999999998776432111
Q ss_pred HHHHHHHHHHHHHHHhHHhHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHhcCHHHHHHHhhh
Q psy5190 209 DEAQRNFQTHRENFEKLRNDVVVKLRFLDENRIKVMHKQLLLFHNAISAYFSGNEPGLQATLKQ 272 (292)
Q Consensus 209 etaqr~~q~aK~rFdKLR~DV~vKLdLLdenRvkvm~~QL~~~~nAl~ay~sgn~~~Le~tl~~ 272 (292)
+.....+..+..+|..=+.++..-|.-+-.+ -....+|..|.+|-+.||..|++.|+..+.+
T Consensus 180 ~~~~~e~E~aEdef~~a~E~a~~~M~~il~~--~e~i~~L~~fv~AQl~Yh~~~~e~L~~l~~~ 241 (242)
T cd07600 180 EAARVEVETAEDEFVSATEEAVELMKEVLDN--PEPLQLLKELVKAQLAYHKTAAELLEELLSV 241 (242)
T ss_pred cchHHHHHHHHHHHHHhHHHHHHHHHHHHhh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 1123334445555555555665555555333 3478899999999999999999999987654
No 19
>cd07590 BAR_Bin3 The Bin/Amphiphysin/Rvs (BAR) domain of Bridging integrator 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Bridging integrator 3 (Bin3) is widely expressed in many tissues except in the brain. It plays roles in regulating filamentous actin localization and in cell division. In humans, the Bin3 gene is located in chromosome 8p21.3, a region that is implicated in cancer suppression. Homozygous inactivation of the Bin3 gene in mice led to the development of cataracts and an increased likelihood of lymphomas during aging, suggesting a role for Bin3 in lens development and cancer suppression. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=98.36 E-value=7.8e-05 Score=68.75 Aligned_cols=182 Identities=18% Similarity=0.240 Sum_probs=134.7
Q ss_pred CCCccCchhhhHHH--H----------------------HHHHHHHHHHHHHHHHhhcChhhHHHHhhchhh-hhhhhHh
Q psy5190 90 KSTRTVDSDLKSRV--L----------------------VIFFLQQTLGEAFADLAQKSPELQEEFLCNSET-QRNLTGT 144 (292)
Q Consensus 90 k~~~TvD~ELeakI--l----------------------~l~qtq~~lgd~F~~Ls~kEpeL~~eF~~naet-qr~m~k~ 144 (292)
.+++|+|.++|... | .+...++.++++++++..-++ ..++...++. +..+..-
T Consensus 4 ~~~~T~D~~fe~~~~rf~~lE~~~~kL~Ke~K~Y~dav~~m~~a~~~is~~l~~~~~~~~--~~~~~~~~e~y~~~~~~l 81 (225)
T cd07590 4 ILSKTVDRELEREVQKLQQLESTTKKLYKDMKKYIEAVLALSKAEQRLSQDLASGPLCED--NDELRNLVEALDSVTTQL 81 (225)
T ss_pred ccccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcccCCC--ChHHHHHHHHHHHHHHHH
Confidence 36789999998877 1 466777777777777543332 1222222221 2222222
Q ss_pred hH---HHHHhH-HHHHHhHHHhhhhhhhhHHHHHHHHHHhhHhHHHHHhhHHHhhccccCcccccchHHHHHHHHHHHHH
Q psy5190 145 GE---ILLNAL-NLFVSSVNTLCNKTIEDTLVTVRQYENARVEYDAYRTDLELLLQVTSNVDSNCSHLDEAQRNFQTHRE 220 (292)
Q Consensus 145 G~---~Ll~aL-~~f~sdl~Tf~~KAI~DTllTIkkYE~AR~EYdAyrl~leem~~e~~~~~~~l~r~etaqr~~q~aK~ 220 (292)
.+ .++.++ ..++.=++.|+. -|++....|++-+.-.++||+++..++.+.+.+.... ...|+..|+..++.|+.
T Consensus 82 ~~~~~~~~~~~~~~vl~Pl~~~~s-~f~~I~~~I~KR~~Kl~DYD~~r~~~~kl~~K~~k~~-~~~KL~kae~el~~Ak~ 159 (225)
T cd07590 82 DKTVQELVNLIQKTFIEPLKRLRS-VFPSVNAAIKRREQSLQEYERLQAKVEKLAEKEKTGP-NLAKLEQAEKALAAARA 159 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccCCh-hHHHHHHHHHHHHHHHH
Confidence 22 222221 234555666665 7889999999999999999999999999997765433 26899999999999999
Q ss_pred HHHhHHhHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHhcCHHHHHHHhhhccc
Q psy5190 221 NFEKLRNDVVVKLRFLDENRIKVMHKQLLLFHNAISAYFSGNEPGLQATLKQFNI 275 (292)
Q Consensus 221 rFdKLR~DV~vKLdLLdenRvkvm~~QL~~~~nAl~ay~sgn~~~Le~tl~~F~i 275 (292)
-|+.+=..+..=|=.|=+.|+--+.-.+..|..+=+.||..+...+.+....|.-
T Consensus 160 ~ye~~N~~L~~ELP~l~~~r~~f~~p~Fqsl~~~Ql~f~~e~~k~~~~l~~~~d~ 214 (225)
T cd07590 160 DFEKQNIKLLEELPKFYNGRTDYFQPCFEALIKSQVLYYSQSTKIFTQLAPNLDN 214 (225)
T ss_pred HHHHHHHHHHHHhHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 9999999999999999999999999999999999999999999998887655543
No 20
>cd07639 BAR_ACAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP1 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1), also called centaurin beta-1, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP1 also participates in the cargo sorting and recycling of the transferrin receptor and integrin beta1. It may also play a role in innate immune responses. ACAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=98.29 E-value=0.0001 Score=66.96 Aligned_cols=158 Identities=15% Similarity=0.209 Sum_probs=137.6
Q ss_pred HHHHHHHHHHHHHHHHhh---cChhhHHHHhhchhhhhhhhHhhHHHHHhHH-HHHHhHHHhhhhhhhhHHHHHHHHHHh
Q psy5190 105 VIFFLQQTLGEAFADLAQ---KSPELQEEFLCNSETQRNLTGTGEILLNALN-LFVSSVNTLCNKTIEDTLVTVRQYENA 180 (292)
Q Consensus 105 ~l~qtq~~lgd~F~~Ls~---kEpeL~~eF~~naetqr~m~k~G~~Ll~aL~-~f~sdl~Tf~~KAI~DTllTIkkYE~A 180 (292)
+.+.+++.|.+.+.+++. .+|.+++.|..|+.+-+-|+.....|+.... -++.-|..|+.--|.+.+.+=|+|+.+
T Consensus 34 ~~~~a~~~F~~~L~~f~~~~~~D~~i~~~l~kFs~~l~ei~~~~~~Ll~~~~~~l~~~L~~F~k~dl~~vKe~kK~FdK~ 113 (200)
T cd07639 34 HYCAASRAFVDGLCDLAHHGPKDPMMAECLEKFSDGLNHILDSHAELLEATQFSFKQQLQLLVKEDLRGFRDARKEFERG 113 (200)
T ss_pred HHHHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhHhhc
Confidence 788999999999999985 5566999999999999999888777777775 467789999999999999999999999
Q ss_pred hHhHHHHHhhHHHhhccccCcccccchHHHHHHHHHHHHHHHHhHHhHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHh
Q psy5190 181 RVEYDAYRTDLELLLQVTSNVDSNCSHLDEAQRNFQTHRENFEKLRNDVVVKLRFLDENRIKVMHKQLLLFHNAISAYFS 260 (292)
Q Consensus 181 R~EYdAyrl~leem~~e~~~~~~~l~r~etaqr~~q~aK~rFdKLR~DV~vKLdLLdenRvkvm~~QL~~~~nAl~ay~s 260 (292)
.-.|++.+.+-..++ +. .-.-+++|-..+..+|..|...+-|.+-+|.-+.++|==.+...|+.|..|...||.
T Consensus 114 s~~~d~al~K~~~~~---k~---k~~e~~Ea~~~l~~~R~~F~~~~ldYV~~in~iq~kKkfefle~ll~~m~a~~tfF~ 187 (200)
T cd07639 114 AESLEAALQHNAETP---RR---KAQEVEEAAAALLGARATFRDRALDYALQINVIEDKKKFDILEFMLQLMEAQASFFQ 187 (200)
T ss_pred chhHHHHHHHHhhcc---cc---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999987766654 21 112567788899999999999999999999999999999999999999999999999
Q ss_pred cCHHHHHH
Q psy5190 261 GNEPGLQA 268 (292)
Q Consensus 261 gn~~~Le~ 268 (292)
.-++.+++
T Consensus 188 qG~ell~~ 195 (200)
T cd07639 188 QGHEALSA 195 (200)
T ss_pred HHHHHHHh
Confidence 88888876
No 21
>cd07603 BAR_ACAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) containing an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. Vertebrates contain at least three members, ACAP1, ACAP2, and ACAP3. ACAP1 and ACAP2 are Arf6-specific GAPs, involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration, by mediating Arf6 signaling. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=98.22 E-value=0.00023 Score=64.34 Aligned_cols=158 Identities=14% Similarity=0.173 Sum_probs=135.4
Q ss_pred HHHHHHHHHHHHHHHHhh---cChhhHHHHhhchhhhhhhhHhhHHHHHhHHHHH-HhHHHhhhhhhhhHHHHHHHHHHh
Q psy5190 105 VIFFLQQTLGEAFADLAQ---KSPELQEEFLCNSETQRNLTGTGEILLNALNLFV-SSVNTLCNKTIEDTLVTVRQYENA 180 (292)
Q Consensus 105 ~l~qtq~~lgd~F~~Ls~---kEpeL~~eF~~naetqr~m~k~G~~Ll~aL~~f~-sdl~Tf~~KAI~DTllTIkkYE~A 180 (292)
..+..++.|.+.+.+++. .++.++..|..|+++-+-|......|+.-+...+ .-|..|+..-|.+.+.+=|+|+.+
T Consensus 34 ~~~~a~~~F~~~L~~~~~~~~~d~~i~~~l~kF~~~l~el~~~~~~L~~q~~~~i~~pL~~F~k~dL~~vKE~kk~Fdk~ 113 (200)
T cd07603 34 TYVNANSLFVNSLNDLSDYFRDDSLVQNCLNKFIQALQEMNNFHTILLDQAQRTVSTQLQNFVKEDIKKVKESKKHFEKI 113 (200)
T ss_pred HHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 577788999999999986 4445889999999999999988888887776655 457999999999999999999999
Q ss_pred hHhHHHHHhhHHHhhccccCcccccchHHHHHHHHHHHHHHHHhHHhHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHh
Q psy5190 181 RVEYDAYRTDLELLLQVTSNVDSNCSHLDEAQRNFQTHRENFEKLRNDVVVKLRFLDENRIKVMHKQLLLFHNAISAYFS 260 (292)
Q Consensus 181 R~EYdAyrl~leem~~e~~~~~~~l~r~etaqr~~q~aK~rFdKLR~DV~vKLdLLdenRvkvm~~QL~~~~nAl~ay~s 260 (292)
--+||+++.+.-.++..- + .-++++-..+..+|..|.+...|.+.++.-+.+++==.+-..|+.|..|-..||-
T Consensus 114 s~~yd~al~k~~~~~K~K-~-----~~~~Ea~~~L~~~Rk~f~~~sldyv~~in~iq~kKk~e~le~ll~~~~A~~tff~ 187 (200)
T cd07603 114 SDDLDNALVKNAQAPRSK-P-----QEAEEATNILTATRSCFRHTALDYVLQINVLQAKKRHEILSTLLSYMHAQFTFFH 187 (200)
T ss_pred HHHHHHHHHHHhccCCCC-H-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999988765555322 1 3567788899999999999999999999999999998999999999999999998
Q ss_pred cCHHHHHH
Q psy5190 261 GNEPGLQA 268 (292)
Q Consensus 261 gn~~~Le~ 268 (292)
.-.+.++.
T Consensus 188 qG~el~~d 195 (200)
T cd07603 188 QGYDLLED 195 (200)
T ss_pred hHHHHHHh
Confidence 87777765
No 22
>cd07606 BAR_SFC_plant The Bin/Amphiphysin/Rvs (BAR) domain of the plant protein SCARFACE (SFC). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. The plant protein SCARFACE (SFC), also called VAscular Network 3 (VAN3), is a plant ACAP (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein), an Arf GTPase Activating Protein (GAP) that plays a role in the trafficking of auxin efflux regulators from the plasma membrane to the endosome. It is required for the normal vein patterning in leaves. SCF contains an N-terminal BAR domain, followed by a Pleckstrin Homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=98.22 E-value=0.00023 Score=64.71 Aligned_cols=159 Identities=16% Similarity=0.233 Sum_probs=133.8
Q ss_pred HHHHHHHHHHHHHHHHhhcC--hhhH----HHHhhchhhhhhhhHhhHHHHHhHH-HHHHhHHHhhhhhhhhHHHHHHHH
Q psy5190 105 VIFFLQQTLGEAFADLAQKS--PELQ----EEFLCNSETQRNLTGTGEILLNALN-LFVSSVNTLCNKTIEDTLVTVRQY 177 (292)
Q Consensus 105 ~l~qtq~~lgd~F~~Ls~kE--peL~----~eF~~naetqr~m~k~G~~Ll~aL~-~f~sdl~Tf~~KAI~DTllTIkkY 177 (292)
++...++.|...+.+++... |.+. ..|..|+.+-+-|+.....|+.-+. -++.-|..|+..-|.+.+.+=|+|
T Consensus 33 ~~~~a~~~Fa~~L~~f~~~~dD~~~~a~gg~~l~kF~~~l~ei~~~~~~L~~q~~~~l~~pL~~F~k~Dl~~vKe~kK~F 112 (202)
T cd07606 33 EAYDGDSAFAESLEEFGGGHDDPISVAVGGPVMTKFTSALREIGSYKEVLRSQVEHMLNDRLAQFADTDLQEVKDARRRF 112 (202)
T ss_pred HHHHHHHHHHHHHHHhcCCCCChHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677778888888886532 2232 4799999999999988888888886 456679999999999999999999
Q ss_pred HHhhHhHHHHHhhHHHhhccccCcccccchHHHHHHHHHHHHHHHHhHHhHHHHHHhhhcccchhHHHHHHHHHHHHHHH
Q psy5190 178 ENARVEYDAYRTDLELLLQVTSNVDSNCSHLDEAQRNFQTHRENFEKLRNDVVVKLRFLDENRIKVMHKQLLLFHNAISA 257 (292)
Q Consensus 178 E~AR~EYdAyrl~leem~~e~~~~~~~l~r~etaqr~~q~aK~rFdKLR~DV~vKLdLLdenRvkvm~~QL~~~~nAl~a 257 (292)
+.+.-+|++.+.+.-.++....+ ..++++...+..+|..|...+.|.+.+|.-+.++|==.+-.-|..|..|...
T Consensus 113 dK~s~~yd~al~K~~~l~k~~k~-----~~~~ea~~~l~~~R~~F~~~~ldyv~~ln~~q~kKk~e~le~ll~~m~A~~t 187 (202)
T cd07606 113 DKASLDYEQARSKFLSLTKDAKP-----EILAAAEEDLGTTRSAFETARFDLMNRLHAADARKRVEFLERLSGSMDAHLA 187 (202)
T ss_pred HHHHHHHHHHHHHHHhccccCch-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999887776543322 4577888999999999999999999999999999988999999999999999
Q ss_pred HHhcCHHHHHH
Q psy5190 258 YFSGNEPGLQA 268 (292)
Q Consensus 258 y~sgn~~~Le~ 268 (292)
||..-++.+.+
T Consensus 188 FF~qG~ell~~ 198 (202)
T cd07606 188 FFKSGYELLRQ 198 (202)
T ss_pred HHHHHHHHHHh
Confidence 99988887765
No 23
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=98.17 E-value=0.00033 Score=62.36 Aligned_cols=163 Identities=17% Similarity=0.267 Sum_probs=111.2
Q ss_pred HHHHHHHHHHHHHHHHhhcChh--hHHHHhhchhhhhhhhHhhH--------HHHHhHHHHHHhHHHhhhhhhhhHHHHH
Q psy5190 105 VIFFLQQTLGEAFADLAQKSPE--LQEEFLCNSETQRNLTGTGE--------ILLNALNLFVSSVNTLCNKTIEDTLVTV 174 (292)
Q Consensus 105 ~l~qtq~~lgd~F~~Ls~kEpe--L~~eF~~naetqr~m~k~G~--------~Ll~aL~~f~sdl~Tf~~KAI~DTllTI 174 (292)
++......||.+|..||.-|++ ++..|..+|++...+...-. .|..+|..++..+.-... ++..-..-.
T Consensus 56 ~l~~~~~e~~~~~~~la~~E~~~~l~~~l~~l~~~~~~~~~~~~~~a~~~~~~l~~~L~ey~~~~~svk~-~l~~R~~~~ 134 (236)
T PF09325_consen 56 ELASALAEFGSSFSQLAKSEEEKSLSEALSQLAEAFEKISELLEEQANQEEETLGEPLREYLRYIESVKE-ALNRRDKKL 134 (236)
T ss_pred HHHHHHHHHHHHHHHhhcccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 6788888999999999998888 99999999988766655433 233444444333332222 222222233
Q ss_pred HHHHHhhHhHHHHHhhHHHhhccccCcccccch-------HHHHHHHHHHHHHHHHhHHhHHHHHHhhhcccchhHHHHH
Q psy5190 175 RQYENARVEYDAYRTDLELLLQVTSNVDSNCSH-------LDEAQRNFQTHRENFEKLRNDVVVKLRFLDENRIKVMHKQ 247 (292)
Q Consensus 175 kkYE~AR~EYdAyrl~leem~~e~~~~~~~l~r-------~etaqr~~q~aK~rFdKLR~DV~vKLdLLdenRvkvm~~Q 247 (292)
..|+.|.-++..-+...+.+...+. ....| +..+++++..++.+|+..-..+..=++-++..|+.+|...
T Consensus 135 ~~~~~a~~~l~kkk~~~~kl~~~~~---~~~~k~~~~~~ei~~~~~~~~~~~~~~~~is~~~k~E~~rf~~~k~~d~k~~ 211 (236)
T PF09325_consen 135 IEYQNAEKELQKKKAQLEKLKASGK---NRQDKVEQAENEIEEAERRVEQAKDEFEEISENIKKELERFEKEKVKDFKSM 211 (236)
T ss_pred HHHHHHHHHHHHHHHHHhcccccch---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444333221 12234 4455778888889999998888888999999999999999
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHhh
Q psy5190 248 LLLFHNAISAYFSGNEPGLQATLK 271 (292)
Q Consensus 248 L~~~~nAl~ay~sgn~~~Le~tl~ 271 (292)
|..|......|+..+.+..+..+.
T Consensus 212 l~~~~~~~i~~~~~~~~~We~~~~ 235 (236)
T PF09325_consen 212 LEEYAESQIEYQKKMLEAWETFLP 235 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHcc
Confidence 999999999999999988887654
No 24
>cd07612 BAR_Bin2 The Bin/Amphiphysin/Rvs (BAR) domain of Bridging integrator 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Bridging integrator 2 (Bin2) is a BAR domain containing protein that is mainly expressed in hematopoietic cells. It is upregulated during granulocyte differentiation and is thought to function primarily in this lineage. The BAR domain of Bin2 is closely related to the BAR domains of amphiphysins, which function primarily in endocytosis and other membrane remodeling events. Amphiphysins contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. Unlike amphiphysins, Bin2 does not appear to contain a C-terminal SH3 domain. Amphiphysin I proteins, enriched in the brain and nervous system, function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (
Probab=98.14 E-value=0.00031 Score=64.51 Aligned_cols=171 Identities=18% Similarity=0.215 Sum_probs=126.4
Q ss_pred HhCCCCccCchhhhHHH--H----------------------HHHHHHHHHHHHHHHHhhcChh----hHHHHhhchhhh
Q psy5190 87 KLGKSTRTVDSDLKSRV--L----------------------VIFFLQQTLGEAFADLAQKSPE----LQEEFLCNSETQ 138 (292)
Q Consensus 87 klGk~~~TvD~ELeakI--l----------------------~l~qtq~~lgd~F~~Ls~kEpe----L~~eF~~naetq 138 (292)
|||++++|.|.+.|-.. | .+...|..+++++.++=..... +..-...+.++-
T Consensus 2 K~g~~e~T~D~~Fe~~e~rf~~le~~~~kL~Ke~K~Y~~av~~M~~~q~~~se~l~e~Y~~~~~~~~~~~~v~e~~d~~~ 81 (211)
T cd07612 2 KLGKTVETKDEQFEQCAMNLNMQQSDGNRLYKDLKAYLNAVKVMHESSKRLSQTLQDIYEPDWDGHEDLGAIVEGEDLLW 81 (211)
T ss_pred CCCCCcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCcccHHHHHHhccHHHH
Confidence 79999999999988776 1 4777777788887776533222 111111111111
Q ss_pred h-hhhHhhHHHHHhHHHHHHhHHHhhhhhhhhHHHHHHHHHHhhHhHHHHHhhHHHhhccccCcccccchHHHHHHHHHH
Q psy5190 139 R-NLTGTGEILLNALNLFVSSVNTLCNKTIEDTLVTVRQYENARVEYDAYRTDLELLLQVTSNVDSNCSHLDEAQRNFQT 217 (292)
Q Consensus 139 r-~m~k~G~~Ll~aL~~f~sdl~Tf~~KAI~DTllTIkkYE~AR~EYdAyrl~leem~~e~~~~~~~l~r~etaqr~~q~ 217 (292)
. .-...+.+.+.||.. |+. -|||....|++=+.-.++||++|..++.+.+.+.. -..|+..|+..++.
T Consensus 82 ~~~~~~~~~~vL~pi~~-------~~s-~f~~i~~~i~KR~~KllDYD~~R~~~~kl~~k~~k---D~~KL~kAe~el~~ 150 (211)
T cd07612 82 NDYEAKLHDQALRTMES-------YMA-QFPDVKERVAKRGRKLVDYDSARHHLEALQNAKKK---DDAKIAKAEEEFNR 150 (211)
T ss_pred HHHHHHHHHHHHHHHHH-------HHH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccc---cHHHHHHHHHHHHH
Confidence 1 111233444555544 443 88999999999999999999999999999876653 24688889999999
Q ss_pred HHHHHHhHHhHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHhcCHHHHHH
Q psy5190 218 HRENFEKLRNDVVVKLRFLDENRIKVMHKQLLLFHNAISAYFSGNEPGLQA 268 (292)
Q Consensus 218 aK~rFdKLR~DV~vKLdLLdenRvkvm~~QL~~~~nAl~ay~sgn~~~Le~ 268 (292)
|+.-|+.|=.....=|=-|=..||--+.-.+..+.++=..||.........
T Consensus 151 Ak~~ye~lN~~L~~ELP~L~~~Ri~f~~psFeal~~~q~~F~~E~~k~~~~ 201 (211)
T cd07612 151 AQVVFEDINRELREELPILYDSRIGCYVTVFQNISNLRDTFYKEMSKLNHD 201 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999888888999999999999998888888888877664433
No 25
>cd07601 BAR_APPL The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains, and are localized to cytoplasmic membranes. Vertebrates contain two APPL proteins, APPL1 and APPL2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=98.13 E-value=0.00054 Score=62.95 Aligned_cols=166 Identities=12% Similarity=0.150 Sum_probs=140.7
Q ss_pred hhhhHHH--H------------HHHHHHHHHHHHHHHH-------hhcChhhHHHHhhchhhhhhhhHhhHHHHHhHH-H
Q psy5190 97 SDLKSRV--L------------VIFFLQQTLGEAFADL-------AQKSPELQEEFLCNSETQRNLTGTGEILLNALN-L 154 (292)
Q Consensus 97 ~ELeakI--l------------~l~qtq~~lgd~F~~L-------s~kEpeL~~eF~~naetqr~m~k~G~~Ll~aL~-~ 154 (292)
.+|+.+| | ++..+++.|...+.++ +..+|.....|..|+.+-+-|+.....|+..+. -
T Consensus 12 ~~L~~~~~kL~K~c~~~~~a~~~~~~A~~~F~~~L~ef~~~~f~~~~dDe~~~~~l~kFs~~l~El~~~~~~L~~q~~~~ 91 (215)
T cd07601 12 LQLSSYMNQLLQACKRVYDAQNELKSATQALSKKLGEYEKQKFELGRDDEILVSTLKQFSKVVDELSTMHSTLSSQLADT 91 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777 1 6888888899888888 656666778899999999999988888887775 5
Q ss_pred HHHhHHHhhhhhhhhHHHHHHHHHHhhHhHHHHHhhHHHhhccccCcccccchH-HHHHHHHHHHHHHHHhHHhHHHHHH
Q psy5190 155 FVSSVNTLCNKTIEDTLVTVRQYENARVEYDAYRTDLELLLQVTSNVDSNCSHL-DEAQRNFQTHRENFEKLRNDVVVKL 233 (292)
Q Consensus 155 f~sdl~Tf~~KAI~DTllTIkkYE~AR~EYdAyrl~leem~~e~~~~~~~l~r~-etaqr~~q~aK~rFdKLR~DV~vKL 233 (292)
++.-|.+|+..-|.+.+.+=|+|+.+.-+|++.+.+.-.++..- +-+.+ .+|-..+..+|..|...+-|.+-+|
T Consensus 92 l~~pL~~F~k~Dl~~vKe~kK~FdK~s~~~d~al~K~~~l~k~k-----~~~~~~~Ea~~~l~~~R~~F~~~~ldYv~~l 166 (215)
T cd07601 92 VLHPISQFMESDLAEIMTLKELFKAASNDHDGVLSKYSRLSKKR-----ENTKVKIEVNDEVYACRKKQHQTAMNYYCAL 166 (215)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHhhCCcCC-----CchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56779999999999999999999999999999998877765321 22344 3788899999999999999999999
Q ss_pred hhhcccchhHHHHHHHHHHHHHHHHHhcCHHHHH
Q psy5190 234 RFLDENRIKVMHKQLLLFHNAISAYFSGNEPGLQ 267 (292)
Q Consensus 234 dLLdenRvkvm~~QL~~~~nAl~ay~sgn~~~Le 267 (292)
..+.++|==.+-.-|..|..|...||-.-++.+.
T Consensus 167 n~iq~kKk~e~Le~ll~~m~A~~tff~qG~ell~ 200 (215)
T cd07601 167 NLLQYKKTTALLEPMIGYLQAQIAFFKMGPEMFT 200 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999988888776
No 26
>cd07595 BAR_RhoGAP_Rich-like The Bin/Amphiphysin/Rvs (BAR) domain of Rich-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to GAP interacting with CIP4 homologs proteins (Rich). Members contain an N-terminal BAR domain, followed by a Rho GAP domain, and a C-terminal prolin-rich region. Vertebrates harbor at least three Rho GAPs in this subfamily including Rich1, Rich2, and SH3-domain binding protein 1 (SH3BP1). Rich1 and Rich2 play complementary roles in the establishment and maintenance of cell polarity. Rich1 is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. Rich2 is a Rac GAP that interacts with CD317 and plays a role in actin cytoskeleton organization and
Probab=98.12 E-value=0.0003 Score=65.47 Aligned_cols=207 Identities=12% Similarity=0.124 Sum_probs=144.8
Q ss_pred chhhhhhhhhcccchhHHHHHHHHHHhCCCCccCchhhhHHHHHHHHHHHHHHHHHHHHhhc---ChhhHHHHhhchhhh
Q psy5190 62 PVSKIESIKNWGISTYKCTRQIMYEKLGKSTRTVDSDLKSRVLVIFFLQQTLGEAFADLAQK---SPELQEEFLCNSETQ 138 (292)
Q Consensus 62 ~~~k~~~~k~W~~~tyk~TKQ~l~EklGk~~~TvD~ELeakIl~l~qtq~~lgd~F~~Ls~k---EpeL~~eF~~naetq 138 (292)
.-.++|.+|+|.-+..+.| +-++.+..++|.|.--+-+ ....||+++-+-|.. +..++..+...|+++
T Consensus 20 lE~~~d~~k~~~~~~~k~~-----~~~lq~n~~~~~ekr~rk~----p~~~Lg~~M~~~g~~l~~~s~lg~~L~~~g~a~ 90 (244)
T cd07595 20 IEKRVEAVKDACQNIHKKL-----ISCLQGQSGEDKDKRLKKL----PEYGLAQSMLESSKELPDDSLLGKVLKLCGEAQ 90 (244)
T ss_pred HHHHHHHHHHHHHHHHHhh-----HHhcCCCcHHHHhhhhccC----cHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 3567788888876655542 2345555677766422212 123344444444432 233888888999998
Q ss_pred hhhhHhhHHHH-HhHHHHHHhHHHhhhhhhhhHHHHHHHHHHhhHhHHHHHhhHHHhhccccCcccccchHHHHHHHHHH
Q psy5190 139 RNLTGTGEILL-NALNLFVSSVNTLCNKTIEDTLVTVRQYENARVEYDAYRTDLELLLQVTSNVDSNCSHLDEAQRNFQT 217 (292)
Q Consensus 139 r~m~k~G~~Ll-~aL~~f~sdl~Tf~~KAI~DTllTIkkYE~AR~EYdAyrl~leem~~e~~~~~~~l~r~etaqr~~q~ 217 (292)
+.+..-..... ..=..|+.-|+++++.-|++...-=|+.+..|+.||+.+..++........ ..+..|+..++...+.
T Consensus 91 ~~ia~~~~~~d~~i~~~fl~pL~~~le~dik~i~k~RKkLe~~RLd~D~~k~r~~ka~k~~~~-~~~~~K~~~l~eE~e~ 169 (244)
T cd07595 91 NTLARELVDHEMNVEEDVLSPLQNILEVEIPNIQKQKKRLSKLVLDMDSARSRYNAAHKSSGG-QGAAAKVDALKDEYEE 169 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccccccc-cccccccchHHHHHHH
Confidence 87776555444 455678999999999999999999999999999999999998765322111 1234566677788889
Q ss_pred HHHHHHhHHhHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHhcCHHHHHHHhhhccccccc
Q psy5190 218 HRENFEKLRNDVVVKLRFLDENRIKVMHKQLLLFHNAISAYFSGNEPGLQATLKQFNIKTNK 279 (292)
Q Consensus 218 aK~rFdKLR~DV~vKLdLLdenRvkvm~~QL~~~~nAl~ay~sgn~~~Le~tl~~F~i~~~~ 279 (292)
+..+|+.-|.++..=|-=|=++- .....+|..|..|-+.||..+.+.|+..+..+.=.+..
T Consensus 170 ae~k~e~~~e~~~~~M~~~l~~E-~e~~~~l~~lv~aQl~YH~~a~e~L~~l~~~l~~~~~~ 230 (244)
T cd07595 170 AELKLEQCRDALATDMYEFLAKE-AEIASYLIDLIEAQREYHRTALSVLEAVLPELQEQIEQ 230 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999988866554333332 34667899999999999999999999988766544443
No 27
>cd07611 BAR_Amphiphysin_I_II The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysin I and II. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Amphiphysins function primarily in endocytosis and other membrane remodeling events. They contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. Amphiphysin I proteins, enriched in the brain and nervous system, contain domains that bind clathrin, Adaptor Protein complex 2 (AP2), dynamin and synaptojanin. They function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (Bin1), are localized in many different tissues and may function in intracellular vesicle trafficking. In skeletal muscle, Bin1 plays a role in the organization and maintenance of the T-tubule network. The N-BAR domain of amphiphysin forms a curved dimer with a posit
Probab=98.12 E-value=0.00035 Score=64.12 Aligned_cols=169 Identities=17% Similarity=0.195 Sum_probs=125.9
Q ss_pred HhCCCCccCchhhhHHH------------H------------HHHHHHHHHHHHHHHHhhcChhhHHH---Hhhchhhhh
Q psy5190 87 KLGKSTRTVDSDLKSRV------------L------------VIFFLQQTLGEAFADLAQKSPELQEE---FLCNSETQR 139 (292)
Q Consensus 87 klGk~~~TvD~ELeakI------------l------------~l~qtq~~lgd~F~~Ls~kEpeL~~e---F~~naetqr 139 (292)
|+|++++|+|.+.|-.. | .+...|..|++++.+|=.-.....+. ...+- ..
T Consensus 2 K~g~~e~T~D~~Fe~~errf~~lE~~~~kL~Ke~K~Y~dav~~m~~sq~~~se~l~e~Y~p~~~g~~~~~~~~~~~--d~ 79 (211)
T cd07611 2 KLGKADETKDEQFEEYVQNFKRQETEGTRLQRELRAYLAAIKGMQEASKKLTESLHEVYEPDWYGRDDVKTIGEKC--DL 79 (211)
T ss_pred CCCCccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccchHHHHHhhH--HH
Confidence 79999999999888766 1 57788888888888776433211111 11111 11
Q ss_pred hhhHhhHHHHHhHHHHHHhHHHhhhhhhhhHHHHHHHHHHhhHhHHHHHhhHHHhhccccCcccccchHHHHHHHHHHHH
Q psy5190 140 NLTGTGEILLNALNLFVSSVNTLCNKTIEDTLVTVRQYENARVEYDAYRTDLELLLQVTSNVDSNCSHLDEAQRNFQTHR 219 (292)
Q Consensus 140 ~m~k~G~~Ll~aL~~f~sdl~Tf~~KAI~DTllTIkkYE~AR~EYdAyrl~leem~~e~~~~~~~l~r~etaqr~~q~aK 219 (292)
.+...-.+|+.. .+.-+++|+. -|+|....|++=+.-.++||+.|..++.+.+.+. .-..|+..|+..++.|+
T Consensus 80 ~~~dl~~~lv~~---vl~P~~~~~s-~f~~I~~~I~KR~hKllDYD~~r~~~~kL~~k~~---kDe~KL~kAe~el~~Ak 152 (211)
T cd07611 80 LWEDFHQKLVDG---ALLTLDTYLG-QFPDIKNRIAKRSRKLVDYDSARHHLEALQTSKR---KDEGRIAKAEEEFQKAQ 152 (211)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcccc---ccHHHHHHHHHHHHHHH
Confidence 222222233222 4555566665 8999999999999999999999999999987663 23468888999999999
Q ss_pred HHHHhHHhHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHhcCHH
Q psy5190 220 ENFEKLRNDVVVKLRFLDENRIKVMHKQLLLFHNAISAYFSGNEP 264 (292)
Q Consensus 220 ~rFdKLR~DV~vKLdLLdenRvkvm~~QL~~~~nAl~ay~sgn~~ 264 (292)
.-|+.|=.....=|=-|=..||--+.-.+..|.++=..||.....
T Consensus 153 ~~ye~lN~~Lk~ELP~L~~~Ri~f~~psFeal~~~q~~f~~E~~k 197 (211)
T cd07611 153 KVFEEFNVDLQEELPSLWSRRVGFYVNTFKNVSSLEAKFHKEISV 197 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHhhhhHHHHHHHHHHHHHHHHH
Confidence 999999999988888888999999999999988888888887654
No 28
>cd07604 BAR_ASAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ASAPs (ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) with similarity to ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins) in that they contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and ankyrin (ANK) repeats. However, ASAPs contain an additional C-terminal SH3 domain. ASAPs function in regulating cell growth, migration, and invasion. Vertebrates contain at least three members, ASAP1, ASAP2, and ASAP3. ASAP1 and ASAP2 shows GTPase activating protein (GAP) activity towards Arf1 and Arf5. They do not show GAP activity towards Arf6, but is able to mediate
Probab=98.11 E-value=0.0003 Score=64.39 Aligned_cols=163 Identities=15% Similarity=0.232 Sum_probs=133.1
Q ss_pred HHHHHHHHHHHHHHHHhhc-----ChhhHHHHhhchhhhhhhhHhhHHHHHhHH-HHHHhHHHhhhhhhhhHH-HHHHHH
Q psy5190 105 VIFFLQQTLGEAFADLAQK-----SPELQEEFLCNSETQRNLTGTGEILLNALN-LFVSSVNTLCNKTIEDTL-VTVRQY 177 (292)
Q Consensus 105 ~l~qtq~~lgd~F~~Ls~k-----EpeL~~eF~~naetqr~m~k~G~~Ll~aL~-~f~sdl~Tf~~KAI~DTl-lTIkkY 177 (292)
..+..+++|++++.++|.. +|+++..|..|+.+++-|+.....|+.-+. -+..-+.+|+..-|.+.+ ..=|+|
T Consensus 34 ~~~~~~~~F~~aL~~~g~~~~~~~~~~i~~~l~kF~~~l~El~~~~~~L~~~~~~~i~~pL~~f~k~dL~~~k~e~KK~f 113 (215)
T cd07604 34 AHVENELQFAEALEKLGSKALSREEEDLGAAFLKFSVFTKELAALFKNLMQNLNNIIMFPLDSLLKGDLKGSKGDLKKPF 113 (215)
T ss_pred HHHHHHHHHHHHHHHHhccccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 4667778888888887753 345899999999999999999988887775 455678999998888877 777799
Q ss_pred HHhhHhHHHHHhhHHHhhccccCcccccchHH----HHHHHHHHHHHHHHhHHhHHHHHHhhhcccchhHHHHHHHHHHH
Q psy5190 178 ENARVEYDAYRTDLELLLQVTSNVDSNCSHLD----EAQRNFQTHRENFEKLRNDVVVKLRFLDENRIKVMHKQLLLFHN 253 (292)
Q Consensus 178 E~AR~EYdAyrl~leem~~e~~~~~~~l~r~e----taqr~~q~aK~rFdKLR~DV~vKLdLLdenRvkvm~~QL~~~~n 253 (292)
+.++-+|+.++..++........ .+.+.|-+ .+-..+..+|..|...+-|.+-||.-+.+.+=-.+-.+|..|+.
T Consensus 114 dK~s~~ye~~~~k~~k~Kk~~~~-~~~~~r~e~~~~e~~~~l~~~R~~F~~~~~~yv~~l~~lq~kKk~e~Le~ll~~~~ 192 (215)
T cd07604 114 DKAWKDYETKASKIEKEKKQLAK-EAGMIRTEITGAEIAEEMEKERRMFQLQMCEYLIKVNEIKTKKGVDLLQHLVEYYH 192 (215)
T ss_pred HHHHHHHHHHHHHHHhccchhhh-hhhhcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999877665433211 11233433 35788999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCHHHHHH
Q psy5190 254 AISAYFSGNEPGLQA 268 (292)
Q Consensus 254 Al~ay~sgn~~~Le~ 268 (292)
|-..||-.-.+.+++
T Consensus 193 Aq~~fF~~G~~ll~~ 207 (215)
T cd07604 193 AQNSYFQDGLKVIEH 207 (215)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999998888876
No 29
>cd07593 BAR_MUG137_fungi The Bin/Amphiphysin/Rvs (BAR) domain of Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This subfamily is composed predominantly of uncharacterized fungal proteins with similarity to Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein (MUG137), which may play a role in meiosis and sporulation in fission yeast. MUG137 contains an N-terminal BAR domain and a C-terminal SH3 domain, similar to endophilins. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be invol
Probab=98.09 E-value=0.00033 Score=64.26 Aligned_cols=191 Identities=16% Similarity=0.180 Sum_probs=121.5
Q ss_pred hhhhhhhcccchhHHHHHHHHHHhCCCC-ccCchhhhHHHHHHHHHHHHHHHHHHHHhhcCh---hhHHHHhhchhhhhh
Q psy5190 65 KIESIKNWGISTYKCTRQIMYEKLGKST-RTVDSDLKSRVLVIFFLQQTLGEAFADLAQKSP---ELQEEFLCNSETQRN 140 (292)
Q Consensus 65 k~~~~k~W~~~tyk~TKQ~l~EklGk~~-~TvD~ELeakIl~l~qtq~~lgd~F~~Ls~kEp---eL~~eF~~naetqr~ 140 (292)
+++..+.|.-.-++.|..-+. .++|.. ...|.+ +.+ ....||+++-+.|..=+ .++..+..+|+++.-
T Consensus 15 ~~d~~~~~~~~l~~~~~~y~~-~l~k~~~~g~~k~---k~~----p~~~Lg~~M~~~g~~lg~dS~~G~aL~~~G~a~~k 86 (215)
T cd07593 15 EIELRKEGMERLHRSTEAYVE-YLSKKKPLLDDKD---KCL----PVEALGLVMINHGEEFPQDSEYGSCLSKLGRAHCK 86 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHhccCccccccc---cCC----hHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHH
Confidence 445555555555555555444 343332 122222 222 24456666655555332 378888888888766
Q ss_pred hhHhhHHHHHhHH-HHHHhHHHhhhhhhhhHHHHHHHHHHhhHhHHHHHhhHHHhhccccCcccccchHHHHHHHHHHHH
Q psy5190 141 LTGTGEILLNALN-LFVSSVNTLCNKTIEDTLVTVRQYENARVEYDAYRTDLELLLQVTSNVDSNCSHLDEAQRNFQTHR 219 (292)
Q Consensus 141 m~k~G~~Ll~aL~-~f~sdl~Tf~~KAI~DTllTIkkYE~AR~EYdAyrl~leem~~e~~~~~~~l~r~etaqr~~q~aK 219 (292)
|..--..+...++ -|+..|..++. -|.+...-=|+.|..|+.||+.+..++....+. ..+...++.|+
T Consensus 87 ia~~q~~f~~~~~~~~l~pL~~~l~-~~k~i~k~RKkLe~rRLdyD~~ksk~~kak~~~----------~~~eeElr~Ae 155 (215)
T cd07593 87 IGTLQEEFADRLSDTFLANIERSLA-EMKEYHSARKKLESRRLAYDAALTKSQKAKKED----------SRLEEELRRAK 155 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc----------hhHHHHHHHHH
Confidence 6653333332222 33333333332 344444557889999999999999988764321 23566788888
Q ss_pred HHHHhHHhHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHhcCHHHHHHHhhhccc
Q psy5190 220 ENFEKLRNDVVVKLRFLDENRIKVMHKQLLLFHNAISAYFSGNEPGLQATLKQFNI 275 (292)
Q Consensus 220 ~rFdKLR~DV~vKLdLLdenRvkvm~~QL~~~~nAl~ay~sgn~~~Le~tl~~F~i 275 (292)
.+|+.=+.|+..-|.=+-++.+.-+ .+|..|..|-+.||..|.+.|+.....+|-
T Consensus 156 ~kfees~E~a~~~M~~i~~~e~e~~-~~L~~lv~AQl~Yh~q~~e~L~~l~~~~~~ 210 (215)
T cd07593 156 AKYEESSEDVEARMVAIKESEADQY-RDLTDLLDAELDYHQQSLDVLREVRQSWPS 210 (215)
T ss_pred HHHHHHHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 8888888888888877777666544 579999999999999999999998776553
No 30
>cd07624 BAR_SNX7_30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 7 and 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX7, SNX30, and similar proteins. The specific functions of SNX7 and SNX30 have not been elucidated. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=98.09 E-value=0.00052 Score=61.48 Aligned_cols=151 Identities=14% Similarity=0.146 Sum_probs=115.0
Q ss_pred HHHHHHHHHHHHHHHHhhcChhhHHHHhhchhhhhhhhHhhHHHHHhHH-HHHHhHHHhhhhhhhhHHHHHHHHHHhhHh
Q psy5190 105 VIFFLQQTLGEAFADLAQKSPELQEEFLCNSETQRNLTGTGEILLNALN-LFVSSVNTLCNKTIEDTLVTVRQYENARVE 183 (292)
Q Consensus 105 ~l~qtq~~lgd~F~~Ls~kEpeL~~eF~~naetqr~m~k~G~~Ll~aL~-~f~sdl~Tf~~KAI~DTllTIkkYE~AR~E 183 (292)
++......||.+|..||.-|++|+..+..+|.+-..++..-..|...+. .|...|.-|+. -|.=.+.+++.=...+.+
T Consensus 46 el~~~~~efg~~~~~ls~~E~~L~~~L~~~~~~~~~~~~~~~~l~~~~~~~f~e~Lkey~~-y~~svk~~l~~R~~~q~~ 124 (200)
T cd07624 46 EYFDELKEYSPIFQLWSASETELAPLLEGVSSAVERCTAALEVLLSDHEFVFLPPLREYLL-YSDAVKDVLKRRDQFQIE 124 (200)
T ss_pred HHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 6888889999999999999999999999998776555554444444333 34444444443 455556677777777777
Q ss_pred HHHHHhhHHHhhccccCcccccchHHHHHHHHHHHHHHHHhHHhHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHhcCH
Q psy5190 184 YDAYRTDLELLLQVTSNVDSNCSHLDEAQRNFQTHRENFEKLRNDVVVKLRFLDENRIKVMHKQLLLFHNAISAYFSGNE 263 (292)
Q Consensus 184 YdAyrl~leem~~e~~~~~~~l~r~etaqr~~q~aK~rFdKLR~DV~vKLdLLdenRvkvm~~QL~~~~nAl~ay~sgn~ 263 (292)
|....-.+..-..+ .+..+.+++.+|+....++..=++-++..|..+|...|..|..+-..|+.++.
T Consensus 125 ~e~~~e~L~~k~~~-------------l~~ev~~a~~~~e~~~~~~~~E~~rF~~~K~~d~k~~l~~~a~~qi~~~~~~~ 191 (200)
T cd07624 125 YELSVEELNKKRLE-------------LLKEVEKLQDKLECANADLKADLERWKQNKRQDLKKILLDMAEKQIQYYEQCL 191 (200)
T ss_pred HHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77765444333221 67778889999999999999999999999999999999999999999999887
Q ss_pred HHHHHH
Q psy5190 264 PGLQAT 269 (292)
Q Consensus 264 ~~Le~t 269 (292)
++-+..
T Consensus 192 ~~We~~ 197 (200)
T cd07624 192 AAWEEV 197 (200)
T ss_pred HHHHhh
Confidence 665554
No 31
>cd07638 BAR_ACAP2 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP2 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2), also called centaurin beta-2, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=98.07 E-value=0.00065 Score=61.83 Aligned_cols=166 Identities=17% Similarity=0.243 Sum_probs=139.4
Q ss_pred hhhhHHH--H------------HHHHHHHHHHHHHHHHhh---cChhhHHHHhhchhhhhhhhHhhHHHHHhHH-HHHHh
Q psy5190 97 SDLKSRV--L------------VIFFLQQTLGEAFADLAQ---KSPELQEEFLCNSETQRNLTGTGEILLNALN-LFVSS 158 (292)
Q Consensus 97 ~ELeakI--l------------~l~qtq~~lgd~F~~Ls~---kEpeL~~eF~~naetqr~m~k~G~~Ll~aL~-~f~sd 158 (292)
.+|+.++ | +++.+++.|+..+.+++. .++-.++-+..|+.+-+-|+.....|+..+. -++.-
T Consensus 12 ~~Le~~l~Kl~K~~~~~~dag~~~~~a~~~F~~~l~d~~~~~~~De~i~~~l~kF~~~l~ei~~~~~~L~~q~~~~l~~~ 91 (200)
T cd07638 12 AELELKLDKLVKLCIGMIDAGKAFCQANKQFMNGIRDLAQYSSKDAVIETSLTKFSDTLQEMINYHTILFDQAQRSIKAQ 91 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777 1 678888899998888864 3334778899999999999988888888775 56778
Q ss_pred HHHhhhhhhhhHHHHHHHHHHhhHhHHHHHhhHHHhhccccCcccccchHHHHHHHHHHHHHHHHhHHhHHHHHHhhhcc
Q psy5190 159 VNTLCNKTIEDTLVTVRQYENARVEYDAYRTDLELLLQVTSNVDSNCSHLDEAQRNFQTHRENFEKLRNDVVVKLRFLDE 238 (292)
Q Consensus 159 l~Tf~~KAI~DTllTIkkYE~AR~EYdAyrl~leem~~e~~~~~~~l~r~etaqr~~q~aK~rFdKLR~DV~vKLdLLde 238 (292)
|..|+..-|.+.+.+=|+|+.+.-+|++.+.+--.++ .. --..+++|-..+..+|..|...+.|.+-+|.-+.+
T Consensus 92 L~~F~k~dl~~vke~kk~FdK~s~~~~~aL~K~~~~~---k~---k~~e~eEa~~~l~~~r~~F~~~~ldYv~~ln~vq~ 165 (200)
T cd07638 92 LQTFVKEDLRKFKDAKKQFDKVSEEKENALVKNAQVQ---RN---KQHEVEEATNILTATRKCFRHIALDYVLQINVLQS 165 (200)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHhccCC---cC---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999977654443 11 11345778889999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHHHHHHHhcCHHHHHH
Q psy5190 239 NRIKVMHKQLLLFHNAISAYFSGNEPGLQA 268 (292)
Q Consensus 239 nRvkvm~~QL~~~~nAl~ay~sgn~~~Le~ 268 (292)
.|==.|-.-|+.|..|...||..-++.+.+
T Consensus 166 kKkfe~le~ll~~m~a~~tff~qG~el~~d 195 (200)
T cd07638 166 KRRSEILKSMLSFMYAHLTFFHQGYDLFSE 195 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 999999999999999999999988888766
No 32
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=98.05 E-value=0.00098 Score=60.70 Aligned_cols=165 Identities=12% Similarity=0.154 Sum_probs=120.2
Q ss_pred HHHHHHHHHHHHHHHHhhcC--hhhHHHHhhchhhhhhhhHh--------hHHHHHhHHHHHHhHHHhhhhhhhhHHHHH
Q psy5190 105 VIFFLQQTLGEAFADLAQKS--PELQEEFLCNSETQRNLTGT--------GEILLNALNLFVSSVNTLCNKTIEDTLVTV 174 (292)
Q Consensus 105 ~l~qtq~~lgd~F~~Ls~kE--peL~~eF~~naetqr~m~k~--------G~~Ll~aL~~f~sdl~Tf~~KAI~DTllTI 174 (292)
++..+...||.+|..||.-| +.|+..|+..|+++..+... -..|..+|...+..+.-+.+ ++.+=.--.
T Consensus 44 ela~~~~~f~~s~~~L~~~E~~~~Ls~al~~la~~~~ki~~~~~~qa~~d~~~l~e~L~eY~r~i~svk~-~f~~R~~a~ 122 (224)
T cd07623 44 ELALNTGSFAKSAAMLSNCEEHTSLSRALSQLAEVEEKIEQLHGEQADTDFYILAELLKDYIGLIGAIKD-VFHERVKVW 122 (224)
T ss_pred HHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 57777778999999999844 55999999999987555432 24666777777766665554 555555556
Q ss_pred HHHHHhhHhHHHHHhhHHHhhccccCc--ccccchHHHHHHHHHHHHHHHHhHHhHHHHHHhhhcccchhHHHHHHHHHH
Q psy5190 175 RQYENARVEYDAYRTDLELLLQVTSNV--DSNCSHLDEAQRNFQTHRENFEKLRNDVVVKLRFLDENRIKVMHKQLLLFH 252 (292)
Q Consensus 175 kkYE~AR~EYdAyrl~leem~~e~~~~--~~~l~r~etaqr~~q~aK~rFdKLR~DV~vKLdLLdenRvkvm~~QL~~~~ 252 (292)
..|..|.-+...-+..++.+.....+. .....-|..+++.+..++.+|+.+..-+..=|.=++..|+.+|...|..|.
T Consensus 123 ~~~q~a~~~l~kkr~~~~Kl~~~~~~~K~~~~~~ev~~~e~~~~~a~~~fe~is~~~k~El~rF~~erv~dfk~~l~~~l 202 (224)
T cd07623 123 QNWQNAQQTLTKKREAKAKLELSGRTDKLDQAQQEIKEWEAKVDRGQKEFEEISKTIKKEIERFEKNRVKDFKDIIIKYL 202 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777766666666655554332210 001122445577888899999999999999999999999999999999999
Q ss_pred HHHHHHHhcCHHHHHHHh
Q psy5190 253 NAISAYFSGNEPGLQATL 270 (292)
Q Consensus 253 nAl~ay~sgn~~~Le~tl 270 (292)
.....|...+.+..+.-+
T Consensus 203 e~~i~~q~~~~~~We~~~ 220 (224)
T cd07623 203 ESLLNTQQQLIKYWEAFL 220 (224)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 999999888877776654
No 33
>cd07592 BAR_Endophilin_A The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins, localized at synapses, which interact with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain three endophilin-A isoforms. Endophilin-A proteins are enriched in the bra
Probab=97.97 E-value=0.00043 Score=63.76 Aligned_cols=193 Identities=15% Similarity=0.170 Sum_probs=133.2
Q ss_pred hhhhhhhhhcccchhHHHHHHHHHHhCCCCccCchhhhH-----HH------HHHHHHHHHHHHHHHHHhhcCh---hhH
Q psy5190 63 VSKIESIKNWGISTYKCTRQIMYEKLGKSTRTVDSDLKS-----RV------LVIFFLQQTLGEAFADLAQKSP---ELQ 128 (292)
Q Consensus 63 ~~k~~~~k~W~~~tyk~TKQ~l~EklGk~~~TvD~ELea-----kI------l~l~qtq~~lgd~F~~Ls~kEp---eL~ 128 (292)
-.++|..+.|.-+-.+.|...|. +..+++.++-. || -..-++...||+++-..|..=+ .++
T Consensus 13 e~~~d~~~~~~~~l~~~~~~~lq-----pNP~~r~~~~~~~~~~K~~g~~~~~~~p~~~~~Lg~~M~~~g~elg~~S~~G 87 (223)
T cd07592 13 ERKTDATSKLVEDLIPKTKEYLQ-----PNPAARAKLAMQNTYSKIRGQAKSTKYPQPEGLLGEVMLKYGRELGEDSNFG 87 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC-----CCchHhHHHHHHHHHHHHhccCcccCCCCcccHHHHHHHHHHhhcCCCChHH
Confidence 35778888888887777777762 11122222111 01 0112233567888877776332 388
Q ss_pred HHHhhchhhhhhhhHhhHHHH-HhHHHHHHhHHHhhhhhhhhHHHHHHHHHHhhHhHHHHHhhHHHhhccccCcccccch
Q psy5190 129 EEFLCNSETQRNLTGTGEILL-NALNLFVSSVNTLCNKTIEDTLVTVRQYENARVEYDAYRTDLELLLQVTSNVDSNCSH 207 (292)
Q Consensus 129 ~eF~~naetqr~m~k~G~~Ll-~aL~~f~sdl~Tf~~KAI~DTllTIkkYE~AR~EYdAyrl~leem~~e~~~~~~~l~r 207 (292)
..+..+|+++.-+..-...+. ..-.-|+.-|.++++.-|.+...-=|+-+..|+.||+.+..+. ..
T Consensus 88 ~aL~~~g~a~~kIa~~~~~~d~~v~~~fl~pL~~~l~~dik~i~k~RKkLe~rRLdyD~~k~k~~---k~---------- 154 (223)
T cd07592 88 QALVEVGEALKQLAEVKDSLDDNVKQNFLDPLQQLQDKDLKEINHHRKKLEGRRLDYDYKKRKQG---KG---------- 154 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---cC----------
Confidence 999999999888777666555 4556788999999999999999999999999999998776532 11
Q ss_pred HHHHHHHHHHHHHHHHhHHhHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHhcCHHHHHHHhhhccccc
Q psy5190 208 LDEAQRNFQTHRENFEKLRNDVVVKLRFLDENRIKVMHKQLLLFHNAISAYFSGNEPGLQATLKQFNIKT 277 (292)
Q Consensus 208 ~etaqr~~q~aK~rFdKLR~DV~vKLdLLdenRvkvm~~QL~~~~nAl~ay~sgn~~~Le~tl~~F~i~~ 277 (292)
....++.+..+|+.=+.++..-|.=+=++.++ ...+|..|..|-+.||..|.+.|+....++.-.+
T Consensus 155 ---~eeEl~~Ae~kfe~s~E~a~~~M~~il~~e~e-~~~~L~~lveAQl~Yh~~~~e~L~~l~~~L~~~~ 220 (223)
T cd07592 155 ---PDEELKQAEEKFEESKELAENSMFNLLENDVE-QVSQLSALVEAQLDYHRQSAEILEELQSKLQERI 220 (223)
T ss_pred ---chHHHHHHHHHHHHHHHHHHHHHHHHHhCchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 12445566666666666676666544444443 3468999999999999999999999887765444
No 34
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=97.96 E-value=0.001 Score=60.16 Aligned_cols=163 Identities=14% Similarity=0.189 Sum_probs=111.3
Q ss_pred HHHHHHHHHHHHHHHHhhcC--hhhHHHHhhchhhhhhhhHh----h----HHHHHhHHHHHHhHHHhhhhhhhhHHHHH
Q psy5190 105 VIFFLQQTLGEAFADLAQKS--PELQEEFLCNSETQRNLTGT----G----EILLNALNLFVSSVNTLCNKTIEDTLVTV 174 (292)
Q Consensus 105 ~l~qtq~~lgd~F~~Ls~kE--peL~~eF~~naetqr~m~k~----G----~~Ll~aL~~f~sdl~Tf~~KAI~DTllTI 174 (292)
++..+...||.+|..||.-| |.|+..|..+|+++..+... . ..|..+|...+..+.-..+ ++.+=..-.
T Consensus 36 ela~~~~efa~~~~~L~~~E~~~~l~~~l~~~a~~~~~~~~~~~~~a~~e~~~l~~~L~ey~r~~~Svk~-~~~~R~~~~ 114 (216)
T cd07627 36 ELASATEEFAETLEALSSLELSKSLSDLLAALAEVQKRIKESLERQALQDVLTLGVTLDEYIRSIGSVRA-AFAQRQKLW 114 (216)
T ss_pred HHHHHHHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 68888889999999999976 67999999999887555532 2 2333455555555444333 333333334
Q ss_pred HHHHHhhHhHHHHHhhHHHhhccccCcc----cccchHHHHHHHHHHHHHHHHhHHhHHHHHHhhhcccchhHHHHHHHH
Q psy5190 175 RQYENARVEYDAYRTDLELLLQVTSNVD----SNCSHLDEAQRNFQTHRENFEKLRNDVVVKLRFLDENRIKVMHKQLLL 250 (292)
Q Consensus 175 kkYE~AR~EYdAyrl~leem~~e~~~~~----~~l~r~etaqr~~q~aK~rFdKLR~DV~vKLdLLdenRvkvm~~QL~~ 250 (292)
..|+.+--+...-+..++.+.....+-. .....++.+++.++.++.+|+.+..-+..=|.-++..|+.+|...|..
T Consensus 115 ~~~~~~~~~L~k~~~~~~Kl~~~~~s~~~K~~~~~~ei~~~e~~~~~a~~~~e~is~~~k~El~rF~~~r~~dfk~~l~~ 194 (216)
T cd07627 115 QYWQSAESELSKKKAQLEKLKRQGKTQQEKLNSLLSELEEAERRASELKKEFEEVSELIKSELERFERERVEDFRNSVEI 194 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555543211000 011234556888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCHHHHHH
Q psy5190 251 FHNAISAYFSGNEPGLQA 268 (292)
Q Consensus 251 ~~nAl~ay~sgn~~~Le~ 268 (292)
|..+...++.++.+.-+.
T Consensus 195 ~~e~~ie~~k~~ie~We~ 212 (216)
T cd07627 195 YLESAIESQKELIELWET 212 (216)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999998776555444
No 35
>cd07602 BAR_RhoGAP_OPHN1-like The Bin/Amphiphysin/Rvs (BAR) domain of Oligophrenin1-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to oligophrenin1 (OPHN1). Members contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, and a Rho GAP domain. Some members contain a C-terminal SH3 domain. Vertebrates harbor at least three Rho GAPs in this subfamily including OPHN1, GTPase Regulator Associated with Focal adhesion kinase (GRAF), GRAF2, and an uncharacterized protein called GAP10-like. OPHN1, GRAF and GRAF2 show GAP activity towards RhoA and Cdc42. In addition, OPHN1 is active towards Rac. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domains of OPHN1
Probab=97.92 E-value=0.0023 Score=58.57 Aligned_cols=159 Identities=12% Similarity=0.175 Sum_probs=134.8
Q ss_pred HHHHHHHHHHHHHHHHhhc---Ch------hhHHHHhhchhhhhhhhHhhHHHHHhH-HHHHHhHHHhhhhhhhhHHHHH
Q psy5190 105 VIFFLQQTLGEAFADLAQK---SP------ELQEEFLCNSETQRNLTGTGEILLNAL-NLFVSSVNTLCNKTIEDTLVTV 174 (292)
Q Consensus 105 ~l~qtq~~lgd~F~~Ls~k---Ep------eL~~eF~~naetqr~m~k~G~~Ll~aL-~~f~sdl~Tf~~KAI~DTllTI 174 (292)
++..+++.|.+.+.+++.. ++ .+++.+..|+.+-.-|+.....|+... .-++.-|..|+..-|.+.+.+=
T Consensus 34 ~~~~a~~~F~~~L~~f~~~~~g~~~tDDe~~i~~~L~kF~~~l~ei~~~r~~L~~q~~~~l~~pL~~F~k~dl~~~ke~k 113 (207)
T cd07602 34 NLSKAQRSFAQTLQNFKFECIGETQTDDEIEIAESLKEFGRLIETVEDERDRMLENAEEQLIEPLEKFRKEQIGGAKEEK 113 (207)
T ss_pred HHHHHHHHHHHHHHHHHhhccCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7889999999999999843 22 267889999998888887777777554 5678889999999999999999
Q ss_pred HHHHHhhHhHHHHHhhHHHhhccccCcccccchHHHHHHHHHHHHHHHHhHHhHHHHHHhhhcccchhHHHHHHHHHHHH
Q psy5190 175 RQYENARVEYDAYRTDLELLLQVTSNVDSNCSHLDEAQRNFQTHRENFEKLRNDVVVKLRFLDENRIKVMHKQLLLFHNA 254 (292)
Q Consensus 175 kkYE~AR~EYdAyrl~leem~~e~~~~~~~l~r~etaqr~~q~aK~rFdKLR~DV~vKLdLLdenRvkvm~~QL~~~~nA 254 (292)
|+|+.+.-+|++.+.+.-.++.... -.-+++|...+..+|..|...+.|.+-+|.-+.+.|==.|..-|..|..|
T Consensus 114 k~FdK~se~~~~al~k~~~lsk~kk-----~~~~~ea~~~l~~~r~~f~~~~l~Yv~~l~~vq~rKkfefle~ll~~m~a 188 (207)
T cd07602 114 KKFDKETEKFCSSLEKHLNLSTKKK-----ENQLQEADAQLDMERRNFHQASLEYVFKLQEVQERKKFEFVETLLSFMYG 188 (207)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCC-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999887655543332 24567788999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCHHHHHH
Q psy5190 255 ISAYFSGNEPGLQA 268 (292)
Q Consensus 255 l~ay~sgn~~~Le~ 268 (292)
...||-.-++.+..
T Consensus 189 ~~tff~qG~el~~d 202 (207)
T cd07602 189 WLTFYHQGHEVAKD 202 (207)
T ss_pred HHHHHHhHHHHHHh
Confidence 99999888887765
No 36
>cd07642 BAR_ASAP2 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ASAP2 (ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 2) is also known as DDEF2 (Development and Differentiation Enhancing Factor 2), AMAP2, centaurin beta-3, or PAG3. ASAP2 mediates the functions of Arf GTPases vial dual mechanisms: it exhibits GTPase activating protein (GAP) activity towards class I (Arf1) and II (Arf5) Arfs; and binds class III Arfs (GTP-Arf6) stably without GAP activity. It binds paxillin and is implicated in Fcgamma receptor-mediated phagocytosis in macrophages and in cell migration. ASAP2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, ankyrin (ANK) repeats, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, i
Probab=97.89 E-value=0.0018 Score=59.77 Aligned_cols=163 Identities=13% Similarity=0.192 Sum_probs=130.8
Q ss_pred HHHHHHHHHHHHHHHHhh-----cChhhHHHHhhchhhhhhhhHhhHHHHHhHHHH-HHhHHHhhhhhhhhHH-HHHHHH
Q psy5190 105 VIFFLQQTLGEAFADLAQ-----KSPELQEEFLCNSETQRNLTGTGEILLNALNLF-VSSVNTLCNKTIEDTL-VTVRQY 177 (292)
Q Consensus 105 ~l~qtq~~lgd~F~~Ls~-----kEpeL~~eF~~naetqr~m~k~G~~Ll~aL~~f-~sdl~Tf~~KAI~DTl-lTIkkY 177 (292)
.-+..++.|.+.+.+||. .+|+++..|..|+..++-|.+.-..|+..++.. ..-+++|+..-+-+.+ .+=|.+
T Consensus 34 ~yv~~~~~f~~~L~~LG~~~l~~dd~~~~~~l~kf~~~~~El~~l~~~L~~~~~~~I~~pl~s~lK~dLr~vK~d~KK~f 113 (215)
T cd07642 34 AHVENEEQYTQALEKFGSNCVCRDDPDLGSAFLKFSVFTKELTALFKNLVQNMNNIITFPLDSLLKGDLKGVKGDLKKPF 113 (215)
T ss_pred HHHHHHHHHHHHHHHHhhcccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhHHHHHHHH
Confidence 567788889999999988 577799999999999999999888888666654 4578888887887776 566779
Q ss_pred HHhhHhHHHHHhhHHHhhccccCcccccchH----HHHHHHHHHHHHHHHhHHhHHHHHHhhhcccchhHHHHHHHHHHH
Q psy5190 178 ENARVEYDAYRTDLELLLQVTSNVDSNCSHL----DEAQRNFQTHRENFEKLRNDVVVKLRFLDENRIKVMHKQLLLFHN 253 (292)
Q Consensus 178 E~AR~EYdAyrl~leem~~e~~~~~~~l~r~----etaqr~~q~aK~rFdKLR~DV~vKLdLLdenRvkvm~~QL~~~~n 253 (292)
+.++=+|++.+.+.+.......- ...+.|. +++-.....+|..|.-.=-|-+-|+..|..++--.+-.++..|+.
T Consensus 114 dK~~~dyE~~~~k~ek~~r~~~K-~~~~~~~e~~~~E~ae~l~~~R~~fq~~a~dYv~~in~lk~kk~~eiL~~l~~~~~ 192 (215)
T cd07642 114 DKAWKDYETKVTKIEKEKKEHAK-MHGMIRTEISGAEIAEEMEKERRFFQLQMCEYLLKVNEIKIKKGVDLLQNLIKYFH 192 (215)
T ss_pred HHHHHHHHHHHHHHHhhhhccCC-ccccchhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 99999999998876654432110 0122222 345667888888888888899999999999999999999999999
Q ss_pred HHHHHHhcCHHHHHH
Q psy5190 254 AISAYFSGNEPGLQA 268 (292)
Q Consensus 254 Al~ay~sgn~~~Le~ 268 (292)
|-..||-.-.+.|++
T Consensus 193 AQ~tfF~qG~k~le~ 207 (215)
T cd07642 193 AQCNFFQDGLKAVET 207 (215)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999988888876
No 37
>cd07618 BAR_Rich1 The Bin/Amphiphysin/Rvs (BAR) domain of RhoGAP interacting with CIP4 homologs protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. RhoGAP interacting with CIP4 homologs protein 1 (Rich1) is also called Neuron-associated developmentally-regulated protein (Nadrin) or Rho GTPase activating protein 17 (ARHGAP17). It is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. It may be a component of a sorting mechanism in the recycling of tight junction transmembrane proteins. Rich1 contains an N-terminal BAR domain followed by a Rho GAP domain and a C-terminal proline-rich domain. It interacts with the BAR domain proteins endophilin and amphiphysin through its proline-rich region. The BAR domain of Rich1 forms oligomers and can bind membranes and induce membrane tubulation.
Probab=97.89 E-value=0.0014 Score=61.33 Aligned_cols=199 Identities=12% Similarity=0.166 Sum_probs=128.8
Q ss_pred hhhhhhhhhcccchhHHHHHHHHHHhCCCCccCchhhhHHHHHHHHHHHHHHHHHHHHhhcCh---hhHHHHhhchhhhh
Q psy5190 63 VSKIESIKNWGISTYKCTRQIMYEKLGKSTRTVDSDLKSRVLVIFFLQQTLGEAFADLAQKSP---ELQEEFLCNSETQR 139 (292)
Q Consensus 63 ~~k~~~~k~W~~~tyk~TKQ~l~EklGk~~~TvD~ELeakIl~l~qtq~~lgd~F~~Ls~kEp---eL~~eF~~naetqr 139 (292)
-.|+|..|+|.-+-.+.|...+ -+..++|.|.-.+=+ ....||+++-+-|..=+ -++..+...|++++
T Consensus 21 e~r~D~~k~~~~~i~k~~~~~l-----qpnp~~r~ek~~kk~----p~~~Lgq~M~e~~~~lg~~s~~g~aL~~~gea~~ 91 (246)
T cd07618 21 ERRLDTVRSVSHNVHKRLIACF-----QGQVGTDAEKRHKKL----PLTALAQNMQEGSAQLGEESLIGKMLDTCGDAEN 91 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHc-----CCChHHHHHHHhccC----CHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHH
Confidence 4678888888887777766554 344455554410001 23446666655555333 28888888888888
Q ss_pred hhhHhh---HHHHHhHHHHHHhHHHhhhhhhhhHHHHHHHHHHhhHhHHHHHhhHHHhhccccC-cccccchHHHHHHHH
Q psy5190 140 NLTGTG---EILLNALNLFVSSVNTLCNKTIEDTLVTVRQYENARVEYDAYRTDLELLLQVTSN-VDSNCSHLDEAQRNF 215 (292)
Q Consensus 140 ~m~k~G---~~Ll~aL~~f~sdl~Tf~~KAI~DTllTIkkYE~AR~EYdAyrl~leem~~e~~~-~~~~l~r~etaqr~~ 215 (292)
.+..-. +..+.. .|+.-+++|++.-|++...-=|+.+..|++||+.+..++....-..+ ..+.-.|+...+...
T Consensus 92 kla~~~~~~d~~ie~--~fl~PL~~~le~dlk~I~K~RkkLe~~RLD~D~~K~r~~~a~~~~~~~~~~~~~K~~~l~ee~ 169 (246)
T cd07618 92 KLAFELSQHEVLLEK--DILDPLNQLAEVEIPNIQKQRKQLAKLVLDWDSARGRYNQAHKSSGTNFQAMPSKIDMLKEEM 169 (246)
T ss_pred HHHHHHHhhHHHHHH--HHHHHHHHHHHhHHHHHHHHHHHHHhHHhhHHHHHHHHHhccccCccccccccchhhhhHHHH
Confidence 777322 333343 89999999999999999999999999999999999998664321110 001123433333444
Q ss_pred HHHHHHHHhHHhHHH-HHHhhhcccchhHHHHHHHHHHHHHHHHHhcCHHHHHHHhhhcc
Q psy5190 216 QTHRENFEKLRNDVV-VKLRFLDENRIKVMHKQLLLFHNAISAYFSGNEPGLQATLKQFN 274 (292)
Q Consensus 216 q~aK~rFdKLR~DV~-vKLdLLdenRvkvm~~QL~~~~nAl~ay~sgn~~~Le~tl~~F~ 274 (292)
.+++.+|+.-|.... .=+.|+ .+=--...+|..|..|-+.||....+.|+..+..+-
T Consensus 170 e~a~~k~E~~kD~~~~dm~~~l--~~e~e~~~~l~~lv~aQ~eYHr~a~e~Le~~~p~i~ 227 (246)
T cd07618 170 DEAGNKVEQCKDQLAADMYNFA--SKEGEYAKFFVLLLEAQADYHRKALAVIEKVLPEIQ 227 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444443332 223444 233456789999999999999999999999877543
No 38
>cd07614 BAR_Endophilin_A2 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins, localized at synapses, which interact with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated
Probab=97.86 E-value=0.00062 Score=62.92 Aligned_cols=192 Identities=15% Similarity=0.191 Sum_probs=135.4
Q ss_pred hhhhhhhhhcccchhHHHHHHHH------------HHhCCCCccCchhhhHHHHHHHHHHHHHHHHHHHHhhcCh---hh
Q psy5190 63 VSKIESIKNWGISTYKCTRQIMY------------EKLGKSTRTVDSDLKSRVLVIFFLQQTLGEAFADLAQKSP---EL 127 (292)
Q Consensus 63 ~~k~~~~k~W~~~tyk~TKQ~l~------------EklGk~~~TvD~ELeakIl~l~qtq~~lgd~F~~Ls~kEp---eL 127 (292)
-.|+|..|.|.-+-++.|.-.|. +++.|-..++ |.=...+....||++|-+.|..=+ .+
T Consensus 13 e~~~d~t~~~~~~l~~~t~~~LqPNp~~R~~~~~~~~~~k~rg~~------k~~~~p~~~~~Lg~~M~~~G~~lg~dS~~ 86 (223)
T cd07614 13 EKKVDLTSKAVTEVLARTIEYLQPNPASRAKLTMLNTVSKIRGQV------KNPGYPQSEGLLGETMIRYGKELGDESNF 86 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCchHhHHHHHHHHHHHHhccc------cCCCCCChHhHHHHHHHHHHhhCCCCChH
Confidence 46788888888877777665544 1111100000 000122345678888888777433 38
Q ss_pred HHHHhhchhhhhhhhHhhHHHH-HhHHHHHHhHHHhhhhhhhhHHHHHHHHHHhhHhHHHHHhhHHHhhccccCcccccc
Q psy5190 128 QEEFLCNSETQRNLTGTGEILL-NALNLFVSSVNTLCNKTIEDTLVTVRQYENARVEYDAYRTDLELLLQVTSNVDSNCS 206 (292)
Q Consensus 128 ~~eF~~naetqr~m~k~G~~Ll-~aL~~f~sdl~Tf~~KAI~DTllTIkkYE~AR~EYdAyrl~leem~~e~~~~~~~l~ 206 (292)
+..+..+|++++-+..-...+. ..=.-|+.-|.++++.-|.+...-=|+.+..|+.||+.+..+ +. .+
T Consensus 87 G~aL~~~G~a~~kia~~~~~~d~~i~~~fl~pL~~~le~dik~i~k~RKkLe~rRLdyD~~K~r~---~k------~~-- 155 (223)
T cd07614 87 GDALLDAGESMKRLAEVKDSLDIEVKQNFIDPLQNLCDKDLKEIQHHLKKLEGRRLDFDYKKKRQ---GK------IP-- 155 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---CC------Cc--
Confidence 9999999999988887666655 444678899999999999999999999999999999976543 10 11
Q ss_pred hHHHHHHHHHHHHHHHHhHHhHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHhcCHHHHHHHhhhccccc
Q psy5190 207 HLDEAQRNFQTHRENFEKLRNDVVVKLRFLDENRIKVMHKQLLLFHNAISAYFSGNEPGLQATLKQFNIKT 277 (292)
Q Consensus 207 r~etaqr~~q~aK~rFdKLR~DV~vKLdLLdenRvkvm~~QL~~~~nAl~ay~sgn~~~Le~tl~~F~i~~ 277 (292)
...++.+.++|+.=+.|+..=|.=+-++.+.- ..+|..|..|-+.||..|++.|+....+..-++
T Consensus 156 -----eeelr~a~ekFees~E~a~~~M~~il~~e~e~-~~~L~~lveAQl~Yh~qa~eiL~~l~~~l~~~~ 220 (223)
T cd07614 156 -----DEELRQAMEKFEESKEVAETSMHNLLETDIEQ-VSQLSALVDAQLDYHRQAVQILDELAEKLKRRM 220 (223)
T ss_pred -----hHHHHHHHHHHHHHHHHHHHHHHHHHhCChHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 24566666677777777777666666666543 458999999999999999999999887765443
No 39
>cd07636 BAR_GRAF The Bin/Amphiphysin/Rvs (BAR) domain of GTPase Regulator Associated with Focal adhesion kinase. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. GTPase Regulator Associated with Focal adhesion kinase (GRAF), also called Rho GTPase activating protein 26 (ARHGAP26), is a GAP with activity towards RhoA and Cdc42 and is only weakly active towards Rac1. It influences Rho-mediated cytoskeletal rearrangements and binds focal adhesion kinase (FAK), which is a critical component of integrin signaling. GRAF contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of GRAF directly interacts with its Rho GAP domain and inhibits its activity. Autoinhibited GRAF is capable o
Probab=97.85 E-value=0.0021 Score=58.96 Aligned_cols=159 Identities=13% Similarity=0.216 Sum_probs=136.0
Q ss_pred HHHHHHHHHHHHHHHHhhc---Ch--h----hHHHHhhchhhhhhhhHhhHHHHHhH-HHHHHhHHHhhhhhhhhHHHHH
Q psy5190 105 VIFFLQQTLGEAFADLAQK---SP--E----LQEEFLCNSETQRNLTGTGEILLNAL-NLFVSSVNTLCNKTIEDTLVTV 174 (292)
Q Consensus 105 ~l~qtq~~lgd~F~~Ls~k---Ep--e----L~~eF~~naetqr~m~k~G~~Ll~aL-~~f~sdl~Tf~~KAI~DTllTI 174 (292)
++..+++.|...+.+++.. ++ + +.+.+..|+.+.+-|+.....|+... .-+++-|.+|+..-|..++.+=
T Consensus 34 ~~~~a~~~Fa~sL~~f~~~~~gd~~~dDe~~I~~~L~kF~~~L~ei~~~r~~L~~qa~~~l~~~L~~F~kedi~~~Ke~k 113 (207)
T cd07636 34 NLSSAKRKFADSLNEFKFQCIGDAETDDEICIARSLQEFAAVLRNLEDERTRMIENASEVLITPLEKFRKEQIGAAKEAK 113 (207)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6788999999999999943 22 2 55788899999888888888877664 6778899999999999999999
Q ss_pred HHHHHhhHhHHHHHhhHHHhhccccCcccccchHHHHHHHHHHHHHHHHhHHhHHHHHHhhhcccchhHHHHHHHHHHHH
Q psy5190 175 RQYENARVEYDAYRTDLELLLQVTSNVDSNCSHLDEAQRNFQTHRENFEKLRNDVVVKLRFLDENRIKVMHKQLLLFHNA 254 (292)
Q Consensus 175 kkYE~AR~EYdAyrl~leem~~e~~~~~~~l~r~etaqr~~q~aK~rFdKLR~DV~vKLdLLdenRvkvm~~QL~~~~nA 254 (292)
|+|+.+.=.|++.+.+--.++..-.+ ..+++|-..+..+|..|...+.|.+-+|..+.+.|-=.+..-|..|..|
T Consensus 114 K~FdK~se~~~~al~k~~~ls~k~K~-----~~~eEA~~~L~~~r~~F~~~sLdYV~qi~~vq~rKkfefle~llsfm~a 188 (207)
T cd07636 114 KKYDKETEKYCAVLEKHLNLSSKKKE-----SQLHEADSQVDLVRQHFYEVSLEYVFKVQEVQERKMFEFVEPLLAFLQG 188 (207)
T ss_pred hhHhhhhhHHHHHHHHHhcCcccCCc-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998876665422221 4788999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCHHHHHH
Q psy5190 255 ISAYFSGNEPGLQA 268 (292)
Q Consensus 255 l~ay~sgn~~~Le~ 268 (292)
...||-.-++.++.
T Consensus 189 ~~tffhqG~el~~d 202 (207)
T cd07636 189 LFTFYHHGYELAKD 202 (207)
T ss_pred HHHHHHhHHHHHHh
Confidence 99999888877765
No 40
>cd07613 BAR_Endophilin_A1 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain three endophilin-A isoforms. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated endocytosis. Endophilin-A1 (or endophilin-1) is also referred to as SH3P4 (SH3 domain containing protein 4) or SH3GL2 (SH3 domain containing Grb2-like protein 2). It is localized in presynaptic nerve terminals. It plays many roles i
Probab=97.81 E-value=0.00076 Score=62.40 Aligned_cols=152 Identities=16% Similarity=0.194 Sum_probs=111.7
Q ss_pred HHHHHHHHHHHHhhcCh---hhHHHHhhchhhhhhhhHhhHHHH-HhHHHHHHhHHHhhhhhhhhHHHHHHHHHHhhHhH
Q psy5190 109 LQQTLGEAFADLAQKSP---ELQEEFLCNSETQRNLTGTGEILL-NALNLFVSSVNTLCNKTIEDTLVTVRQYENARVEY 184 (292)
Q Consensus 109 tq~~lgd~F~~Ls~kEp---eL~~eF~~naetqr~m~k~G~~Ll-~aL~~f~sdl~Tf~~KAI~DTllTIkkYE~AR~EY 184 (292)
....||+++-+-|..=+ .++..+..+|++++-+......+. ..=.-|+.-|++|.+.-|.+...-=|+-+..|+.|
T Consensus 65 ~~~~Lg~~M~~~G~elg~dS~~G~aL~~~G~A~~kla~~~~~~~~~i~~~fl~PL~~~~~~dik~i~k~RKkLe~rRLd~ 144 (223)
T cd07613 65 AEALLAEAMLKFGRELGDECNFGPALGDVGEAMRELSEVKDSLDMEVKQNFIDPLQNLHDKDLREIQHHLKKLEGRRLDF 144 (223)
T ss_pred hHhHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 34667888877776433 388888888988877776665555 44467888899999999999999999999999999
Q ss_pred HHHHhhHHHhhccccCcccccchHHHHHHHHHHHHHHHHhHHhHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHhcCHH
Q psy5190 185 DAYRTDLELLLQVTSNVDSNCSHLDEAQRNFQTHRENFEKLRNDVVVKLRFLDENRIKVMHKQLLLFHNAISAYFSGNEP 264 (292)
Q Consensus 185 dAyrl~leem~~e~~~~~~~l~r~etaqr~~q~aK~rFdKLR~DV~vKLdLLdenRvkvm~~QL~~~~nAl~ay~sgn~~ 264 (292)
|+.+..+... ....++.|..+|+.=+.++..=|.=|=++-+. -..+|..|..|-+.||..|++
T Consensus 145 D~~K~r~~k~----------------~eeElr~A~~kFees~E~a~~~M~n~l~~e~e-~~~~L~~fveAQl~Yh~qa~e 207 (223)
T cd07613 145 DYKKKRQGKI----------------PDEELRQALEKFDESKEIAESSMFNLLEMDIE-QVSQLSALVQAQLEYHKQATQ 207 (223)
T ss_pred HHHHHhCCCC----------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHcCch-HHHHHHHHHHHHHHHHHHHHH
Confidence 9866543211 24456666777777777776555444444443 334999999999999999999
Q ss_pred HHHHHhhhccccc
Q psy5190 265 GLQATLKQFNIKT 277 (292)
Q Consensus 265 ~Le~tl~~F~i~~ 277 (292)
.|+....++.-++
T Consensus 208 iL~~l~~~l~~~~ 220 (223)
T cd07613 208 ILQQVTVKLEDRI 220 (223)
T ss_pred HHHHHHHHHHHHh
Confidence 9999877765433
No 41
>cd07634 BAR_GAP10-like The Bin/Amphiphysin/Rvs (BAR) domain of Rho GTPase activating protein 10-like. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This group is composed of uncharacterized proteins called Rho GTPase activating protein (GAP) 10-like. GAP10-like may be a GAP with activity towards RhoA and Cdc42. Similar to GRAF and GRAF2, it contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domains of the related proteins GRAF and OPHN1, directly interact with their Rho GAP domains and inhibit theiractivity. The autoinhibited proteins are capable of binding membranes and tubulating liposomes, showing that the membrane-tubulation and GAP-inhibitory functions of the BAR domain
Probab=97.80 E-value=0.0021 Score=58.95 Aligned_cols=159 Identities=13% Similarity=0.177 Sum_probs=134.8
Q ss_pred HHHHHHHHHHHHHHHHhh-------cChh--hHHHHhhchhhhhhhhHhhHHHHHhH-HHHHHhHHHhhhhhhhhHHHHH
Q psy5190 105 VIFFLQQTLGEAFADLAQ-------KSPE--LQEEFLCNSETQRNLTGTGEILLNAL-NLFVSSVNTLCNKTIEDTLVTV 174 (292)
Q Consensus 105 ~l~qtq~~lgd~F~~Ls~-------kEpe--L~~eF~~naetqr~m~k~G~~Ll~aL-~~f~sdl~Tf~~KAI~DTllTI 174 (292)
++...++.|+..+.+++. .+++ ++..|..|+..-..|......|+... .-++.-|.+|+..-|.+++.+=
T Consensus 34 ~~~~a~~~Fa~sL~~f~~~~igd~~tDde~~i~~~l~~Fs~~l~el~~~~~~L~~~~~~~l~~pL~~f~k~dl~~vKe~k 113 (207)
T cd07634 34 NLSMAVQKFSQSLQDFQFECIGDAETDDEISIAQSLKEFARLLIAVEEERRRLIQNANDVLIAPLEKFRKEQIGAAKDGK 113 (207)
T ss_pred HHHHHHHHHHHHHHHHHhhccCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 688889999999999882 2333 77889999988888888888887666 4567789999999999999999
Q ss_pred HHHHHhhHhHHHHHhhHHHhhccccCcccccchHHHHHHHHHHHHHHHHhHHhHHHHHHhhhcccchhHHHHHHHHHHHH
Q psy5190 175 RQYENARVEYDAYRTDLELLLQVTSNVDSNCSHLDEAQRNFQTHRENFEKLRNDVVVKLRFLDENRIKVMHKQLLLFHNA 254 (292)
Q Consensus 175 kkYE~AR~EYdAyrl~leem~~e~~~~~~~l~r~etaqr~~q~aK~rFdKLR~DV~vKLdLLdenRvkvm~~QL~~~~nA 254 (292)
|+|+.+.-.|++.+.+-..++.... -..+++|-..+..+|..|...+-|.+-||.-+.+++==.+...|..|..|
T Consensus 114 K~FDK~se~y~~aleK~l~l~~~kk-----~~~~~ea~~~l~~~R~~F~~~~ldYv~~i~~vq~kKkfefle~ll~~~~A 188 (207)
T cd07634 114 KKFDKESEKYYSILEKHLNLSAKKK-----ESHLQRADTQIDREHQNFYEASLEYVFKIQEVQEKKKFEFVEPLLAFLQG 188 (207)
T ss_pred cchhHHHhHHHHHHHHHHhccccCC-----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998776555543221 24678889999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCHHHHHH
Q psy5190 255 ISAYFSGNEPGLQA 268 (292)
Q Consensus 255 l~ay~sgn~~~Le~ 268 (292)
...||-.-++.+++
T Consensus 189 ~~tff~qG~el~~d 202 (207)
T cd07634 189 LFTFYHEGYELAQE 202 (207)
T ss_pred HHHHHHhHHHHHHh
Confidence 99999888887766
No 42
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=97.74 E-value=0.0041 Score=53.87 Aligned_cols=158 Identities=18% Similarity=0.221 Sum_probs=108.7
Q ss_pred HHHHHHHHHHHHHHHHhhcChh----hHHHHhhchhhhhhhhHhh--------HHHHHhHHHHHHhHHHhhhhhhhhHHH
Q psy5190 105 VIFFLQQTLGEAFADLAQKSPE----LQEEFLCNSETQRNLTGTG--------EILLNALNLFVSSVNTLCNKTIEDTLV 172 (292)
Q Consensus 105 ~l~qtq~~lgd~F~~Ls~kEpe----L~~eF~~naetqr~m~k~G--------~~Ll~aL~~f~sdl~Tf~~KAI~DTll 172 (292)
.+...+..||.+|..||.-|.. |+..|..+|++...+...- ..++.+|+.++..+. =.+.
T Consensus 36 ~l~~~~~elg~~~~~Ls~~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~L~~y~~~~~--------s~k~ 107 (218)
T cd07596 36 ELGSALGEFGKALIKLAKCEEEVGGELGEALSKLGKAAEELSSLSEAQANQELVKLLEPLKEYLRYCQ--------AVKE 107 (218)
T ss_pred HHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH--------HHHH
Confidence 5777788899999999997754 8888888887765444333 344455554444333 3333
Q ss_pred HHHHHHHhhHhHHHHHhhH-------HHhhccccCccc----ccchHHHHHHHHHHHHHHHHhHHhHHHHHHhhhcccch
Q psy5190 173 TVRQYENARVEYDAYRTDL-------ELLLQVTSNVDS----NCSHLDEAQRNFQTHRENFEKLRNDVVVKLRFLDENRI 241 (292)
Q Consensus 173 TIkkYE~AR~EYdAyrl~l-------eem~~e~~~~~~----~l~r~etaqr~~q~aK~rFdKLR~DV~vKLdLLdenRv 241 (292)
+++....+..+|......+ +.+...+..-.. --.++..+..+...++.+|+.+...+..=+.-++..|+
T Consensus 108 ~l~~R~~~~~~~~~~~~~l~~k~~~~~kl~~~~~~~~~ki~~l~~~i~~~e~~~~~~~~~~~~i~~~~~~El~~f~~~~~ 187 (218)
T cd07596 108 TLDDRADALLTLQSLKKDLASKKAQLEKLKAAPGIKPAKVEELEEELEEAESALEEARKRYEEISERLKEELKRFHEERA 187 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445444444444444333 333322210000 11234456788899999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhcCHHHHHHHh
Q psy5190 242 KVMHKQLLLFHNAISAYFSGNEPGLQATL 270 (292)
Q Consensus 242 kvm~~QL~~~~nAl~ay~sgn~~~Le~tl 270 (292)
.+|..-|..|......|+.++.+..+...
T Consensus 188 ~dlk~~l~~~~~~qi~~~~~~~~~W~~~~ 216 (218)
T cd07596 188 RDLKAALKEFARLQVQYAEKIAEAWESLL 216 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 99999999999999999999998887753
No 43
>cd07635 BAR_GRAF2 The Bin/Amphiphysin/Rvs (BAR) domain of GTPase Regulator Associated with Focal adhesion 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. GTPase Regulator Associated with Focal adhesion kinase 2 (GRAF2), also called Rho GTPase activating protein 10 (ARHGAP10) or PS-GAP, is a GAP with activity towards Cdc42 and RhoA which regulates caspase-activated p21-activated protein kinase-2 (PAK-2p34). GRAF2 interacts with PAK-2p34, leading to its stabilization and decrease of cell death. It is highly expressed in skeletal muscle and also interacts with PKNbeta, which is a target of Rho. GRAF2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of the related prote
Probab=97.74 E-value=0.005 Score=56.50 Aligned_cols=159 Identities=13% Similarity=0.177 Sum_probs=135.3
Q ss_pred HHHHHHHHHHHHHHHHhhcCh-------h--hHHHHhhchhhhhhhhHhhHHHHHhH-HHHHHhHHHhhhhhhhhHHHHH
Q psy5190 105 VIFFLQQTLGEAFADLAQKSP-------E--LQEEFLCNSETQRNLTGTGEILLNAL-NLFVSSVNTLCNKTIEDTLVTV 174 (292)
Q Consensus 105 ~l~qtq~~lgd~F~~Ls~kEp-------e--L~~eF~~naetqr~m~k~G~~Ll~aL-~~f~sdl~Tf~~KAI~DTllTI 174 (292)
++...++.|...+.+++.... + +++-+..|+.++..++.....|+..+ .-++.-|..|+..-|..++.+=
T Consensus 34 ~~~~a~~~Fa~~L~~f~~~~~gd~~~dde~~i~~sl~ef~~~~~el~d~r~~L~~~~~~~l~~pL~~F~kedl~~~Ke~K 113 (207)
T cd07635 34 SLSAAQRKFAHSLRDFKFEFIGDAETDDERCIDASLQEFSNFLKNLEEQREIMALNVTETLIKPLERFRKEQLGAVKEEK 113 (207)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 688888999999999984321 2 45778889999999999888888775 4578889999999999999999
Q ss_pred HHHHHhhHhHHHHHhhHHHhhccccCcccccchHHHHHHHHHHHHHHHHhHHhHHHHHHhhhcccchhHHHHHHHHHHHH
Q psy5190 175 RQYENARVEYDAYRTDLELLLQVTSNVDSNCSHLDEAQRNFQTHRENFEKLRNDVVVKLRFLDENRIKVMHKQLLLFHNA 254 (292)
Q Consensus 175 kkYE~AR~EYdAyrl~leem~~e~~~~~~~l~r~etaqr~~q~aK~rFdKLR~DV~vKLdLLdenRvkvm~~QL~~~~nA 254 (292)
|+|+.+.=+|++++.+.-.++..-.+ .-+++|-..+..+|..|...+.|.+-+|.-+.+.|==.|..-|..|..|
T Consensus 114 K~FdK~se~~~~Al~K~~~ls~kkk~-----~e~~EA~~~l~~~r~~F~~~sLdYv~qin~lQ~rKKfe~le~ll~~m~a 188 (207)
T cd07635 114 KKFDKETEKNYSLLEKHLNLSAKKKE-----PQLQEADVQVEQNRQHFYELSLEYVCKLQEIQERKKFECVEPMLSFFQG 188 (207)
T ss_pred HHHHHhhhHHHHHHHHHHhccCCCCc-----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998886666522221 2567888999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCHHHHHH
Q psy5190 255 ISAYFSGNEPGLQA 268 (292)
Q Consensus 255 l~ay~sgn~~~Le~ 268 (292)
...||-.-++.++.
T Consensus 189 ~~tffhqG~el~~d 202 (207)
T cd07635 189 VFTFYHQGYELAKD 202 (207)
T ss_pred HHHHHHhHHHHHHh
Confidence 99999888887765
No 44
>cd07663 BAR_SNX5 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 5. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX5, abundantly expressed in macrophages, regulates macropinocytosis, a process that enables cells to internalize large amounts of external solutes. It may also be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It
Probab=97.72 E-value=0.0069 Score=55.97 Aligned_cols=154 Identities=17% Similarity=0.234 Sum_probs=108.1
Q ss_pred HHHHHHHHHHHHHHH-------HhhcChh-hHHHHhhchhhhhhhhH----h----hHHHHHhHHHHHHhHHHhhhhhhh
Q psy5190 105 VIFFLQQTLGEAFAD-------LAQKSPE-LQEEFLCNSETQRNLTG----T----GEILLNALNLFVSSVNTLCNKTIE 168 (292)
Q Consensus 105 ~l~qtq~~lgd~F~~-------Ls~kEpe-L~~eF~~naetqr~m~k----~----G~~Ll~aL~~f~sdl~Tf~~KAI~ 168 (292)
.+++.++.+|+.|+. |+-+||. |+.+|+..|+.--.|.+ + -..|-.+|...+.+++..-. .+.
T Consensus 48 ~lv~~rkela~~~~~~s~al~~l~~ee~t~L~kals~lae~~Ek~~~l~~r~A~~d~~~L~e~L~~Y~r~~~A~K~-ll~ 126 (218)
T cd07663 48 KMTRSHKNVADDYIHISAALNSVAAEEPTVIKKYLLKVAELFEKLRKVEDRVASDQDLKLTELLRYYMLNIEAAKD-LLY 126 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHH-HHH
Confidence 577777777766666 6667774 89999999886533332 2 23555566666665553332 222
Q ss_pred hHHHHHHHHHHhhHhHHHHHhhHHHhhccccCcccccchHHHHHHHHHHHHHHHHhHHhHHHHHHhhhcccchhHHHHHH
Q psy5190 169 DTLVTVRQYENARVEYDAYRTDLELLLQVTSNVDSNCSHLDEAQRNFQTHRENFEKLRNDVVVKLRFLDENRIKVMHKQL 248 (292)
Q Consensus 169 DTllTIkkYE~AR~EYdAyrl~leem~~e~~~~~~~l~r~etaqr~~q~aK~rFdKLR~DV~vKLdLLdenRvkvm~~QL 248 (292)
.=.--...|++|..--+..|.. ...|..++..++++..+|+++=.-+-.=|.=++..||++|.+.|
T Consensus 127 rR~ral~~~e~A~~~L~KaR~k--------------~kev~~aE~~~~ea~~~Fe~IS~~~k~El~rF~~~Rv~~Fk~~l 192 (218)
T cd07663 127 RRARALADYENSNKALDKARLK--------------SKDVKQAEAHQQECCQKFEKLSESAKQELISFKRRRVAAFRKNL 192 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh--------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222344555555333333311 13466788889999999999999988888889999999999999
Q ss_pred HHHHHHHHHHHhcCHHHHHHHhhhc
Q psy5190 249 LLFHNAISAYFSGNEPGLQATLKQF 273 (292)
Q Consensus 249 ~~~~nAl~ay~sgn~~~Le~tl~~F 273 (292)
.-|..........+.+.|..++..|
T Consensus 193 ve~~E~~ik~ak~~~~~~~~~~~~~ 217 (218)
T cd07663 193 IEMTELEIKHAKNNVSLLQSCIDLF 217 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999887654
No 45
>cd07628 BAR_Atg24p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Atg24p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Atg24p is involved in membrane fusion events at the vacuolar surface during pexophagy. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=97.63 E-value=0.0086 Score=53.27 Aligned_cols=145 Identities=12% Similarity=0.189 Sum_probs=112.0
Q ss_pred HHHHHHHHHHHHHHHHhhcChh-hHHHHhhchhhhhhhhHhhHHHHHhHH-HHHHhHHHhhhhhhhhHHHHHHHHHHhhH
Q psy5190 105 VIFFLQQTLGEAFADLAQKSPE-LQEEFLCNSETQRNLTGTGEILLNALN-LFVSSVNTLCNKTIEDTLVTVRQYENARV 182 (292)
Q Consensus 105 ~l~qtq~~lgd~F~~Ls~kEpe-L~~eF~~naetqr~m~k~G~~Ll~aL~-~f~sdl~Tf~~KAI~DTllTIkkYE~AR~ 182 (292)
++..-+..||.+|..||.-|++ |+..|..+|..-..+++.-..|...+. .|...|.-|.. -|.=.+.+++.=.+.++
T Consensus 36 ~l~~d~~efg~~~~~L~~~E~~~L~~~l~~~~~~~~~~s~~~~~l~~~~~~~f~~~Lkd~~~-y~~s~k~~lk~R~~kq~ 114 (185)
T cd07628 36 DLSVDYADLATQFQKLGSLESGEITEPFKIFSESLSQFSTSLRVLNKYTDENYLTSLKDLLH-YILSLKNLIKLRDQKQL 114 (185)
T ss_pred HHHHHHHHHHHHHHHHHhhCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 5788889999999999999999 999999998665555544444444422 25555555443 55556677777778888
Q ss_pred hHHHHHhhHHHhhccccCcccccchHHHHHHHHHHHHHHHHhHHhHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHhcC
Q psy5190 183 EYDAYRTDLELLLQVTSNVDSNCSHLDEAQRNFQTHRENFEKLRNDVVVKLRFLDENRIKVMHKQLLLFHNAISAYFSGN 262 (292)
Q Consensus 183 EYdAyrl~leem~~e~~~~~~~l~r~etaqr~~q~aK~rFdKLR~DV~vKLdLLdenRvkvm~~QL~~~~nAl~ay~sgn 262 (292)
+|....-.+ ....+..++.+|+..-.+|..=++-++..+...|...|..|..+=..|+.++
T Consensus 115 d~e~l~e~l-------------------l~~~ve~a~~~~e~f~~~~~~E~~rF~~~k~~elk~~l~~~a~~qi~~y~~~ 175 (185)
T cd07628 115 DYEELSDYL-------------------LTDEVENAKETSDAFNKEVLKEYPNFERIKKQEIKDSLGALADGHIDFYQGL 175 (185)
T ss_pred hHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 887765333 3446789999999999999999999999999999999999999999999988
Q ss_pred HHHHHHH
Q psy5190 263 EPGLQAT 269 (292)
Q Consensus 263 ~~~Le~t 269 (292)
.+.-+..
T Consensus 176 ~~~W~~~ 182 (185)
T cd07628 176 VEDWEKV 182 (185)
T ss_pred HHHHHhh
Confidence 7665554
No 46
>cd07641 BAR_ASAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ASAP1 (ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 1) is also known as DDEF1 (Development and Differentiation Enhancing Factor 1), AMAP1, centaurin beta-4, or PAG2. ASAP1 is an Arf GTPase activating protein (GAP) with activity towards Arf1 and Arf5 but not Arf6 However, it has been shown to bind GTP-Arf6 stably without GAP activity. It has been implicated in cell growth, migration, and survival, as well as in tumor invasion and malignancy. It binds paxillin and cortactin, two components of invadopodia which are essential for tumor invasiveness. It also binds focal adhesion kinase (FAK) and the SH2/SH3 adaptor CrkL. ASAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Ar
Probab=97.60 E-value=0.012 Score=54.46 Aligned_cols=163 Identities=13% Similarity=0.199 Sum_probs=132.4
Q ss_pred HHHHHHHHHHHHHHHHhhc-----ChhhHHHHhhchhhhhhhhHhhHHHHHhHHHHH-HhHHHhhhhhhhhHH-HHHHHH
Q psy5190 105 VIFFLQQTLGEAFADLAQK-----SPELQEEFLCNSETQRNLTGTGEILLNALNLFV-SSVNTLCNKTIEDTL-VTVRQY 177 (292)
Q Consensus 105 ~l~qtq~~lgd~F~~Ls~k-----EpeL~~eF~~naetqr~m~k~G~~Ll~aL~~f~-sdl~Tf~~KAI~DTl-lTIkkY 177 (292)
.-+..++.|.+.+.+||+. +|+++..|..|+...+-|...-..|+..+++.+ ..|.+|+-.-|-+.+ .+=|.+
T Consensus 34 ~yv~n~~~f~~~l~~Lg~~~~~~dd~~i~~a~~kfs~~~~El~~~~k~L~~~~~~~v~~~L~~flK~Dlr~~K~d~KK~F 113 (215)
T cd07641 34 DHVQNEENYAQALDKFGSNFLSRDNPDLGTAFVKFSTLTKELSTLLKNLLQGLSHNVIFTLDSLLKGDLKGVKGDLKKPF 113 (215)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhHH
Confidence 5677778888888888754 488999999999999999998888998888655 579999999999999 888999
Q ss_pred HHhhHhHHHHHhhHHHhhccccCcccccchHH----HHHHHHHHHHHHHHhHHhHHHHHHhhhcccchhHHHHHHHHHHH
Q psy5190 178 ENARVEYDAYRTDLELLLQVTSNVDSNCSHLD----EAQRNFQTHRENFEKLRNDVVVKLRFLDENRIKVMHKQLLLFHN 253 (292)
Q Consensus 178 E~AR~EYdAyrl~leem~~e~~~~~~~l~r~e----taqr~~q~aK~rFdKLR~DV~vKLdLLdenRvkvm~~QL~~~~n 253 (292)
+.+.=+|++.+.+.+....+..- ...++|-+ ++-......|..|.-.=-|-+.|+..+..++--.+-..|..|..
T Consensus 114 dK~~kDye~k~~K~ek~~r~~~K-~~e~~r~e~~~~Eaa~~l~~~Rr~Fq~~a~dYllqin~iq~Kk~~eiLq~ll~~~h 192 (215)
T cd07641 114 DKAWKDYETKFTKIEKEKREHAK-QHGMIRTEITGAEIAEEMEKERRLFQLQMCEYLIKVNEIKTKKGVDLLQNLIKYYH 192 (215)
T ss_pred HHHHHHHHHHHHHHHhhhhhhcC-cccchhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 99999999999998775542211 11333322 45556777777787778889999999999999999999999999
Q ss_pred HHHHHHhcCHHHHHH
Q psy5190 254 AISAYFSGNEPGLQA 268 (292)
Q Consensus 254 Al~ay~sgn~~~Le~ 268 (292)
|-..||-.-.+.++.
T Consensus 193 Aq~tfFqqG~~~~~~ 207 (215)
T cd07641 193 AQCNFFQDGLKTADK 207 (215)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999888888776
No 47
>cd07648 F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proteins in this group have been named FCH domain Only (FCHO) proteins. Vertebrates have two members, FCHO1 and FCHO2. These proteins contain an F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=97.58 E-value=0.0091 Score=55.02 Aligned_cols=171 Identities=17% Similarity=0.274 Sum_probs=102.2
Q ss_pred HHHHHHHHHHHHHHHHhhcCh------hhHHHHhhchhhhhhhhHhhHHHHHhHHHHHHhHHHhhh------h-------
Q psy5190 105 VIFFLQQTLGEAFADLAQKSP------ELQEEFLCNSETQRNLTGTGEILLNALNLFVSSVNTLCN------K------- 165 (292)
Q Consensus 105 ~l~qtq~~lgd~F~~Ls~kEp------eL~~eF~~naetqr~m~k~G~~Ll~aL~~f~sdl~Tf~~------K------- 165 (292)
+-+.+.+.|+..+..|+.+-. .+...|...-.....|+.....|...|.-++.+|..|+. |
T Consensus 30 eRa~IEe~Yak~L~kLakk~~~~~~~gt~~~~w~~i~~~~e~~a~~H~~l~~~L~~~~~~l~~~~~~~~k~rK~~k~~~~ 109 (261)
T cd07648 30 ERATIEETYSKALNKLAKQASNSSQLGTFAPLWLVLRVSTEKLSELHLQLVQKLQELIKDVQKYGEEQHKKHKKVKEEES 109 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456667777777777776542 233333333333344444555555555555555555432 1
Q ss_pred ----hhhhHHHHHHHHHHhhHhHHHHHhhHHHhhccccCcccccc----hHHHHHHHH-------HHHHHHHHhHHhHHH
Q psy5190 166 ----TIEDTLVTVRQYENARVEYDAYRTDLELLLQVTSNVDSNCS----HLDEAQRNF-------QTHRENFEKLRNDVV 230 (292)
Q Consensus 166 ----AI~DTllTIkkYE~AR~EYdAyrl~leem~~e~~~~~~~l~----r~etaqr~~-------q~aK~rFdKLR~DV~ 230 (292)
++.....+....+.||--|.+.|.+.+.+.....+ ...++ |+.++...+ ...+..|..-=..++
T Consensus 110 ~~~k~~~~~~~~~~~l~KaK~~Y~~~c~e~e~~~~~~~s-~k~~eK~~~K~~ka~~~Y~~~v~~~~~~~~~~~~~m~~~~ 188 (261)
T cd07648 110 GTAEAVQAIQTTTAALQKAKEAYHARCLELERLRRENAS-PKEIEKAEAKLKKAQDEYKALVEKYNNIRADFETKMTDSC 188 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12222233456688999999999999988644321 11222 233443333 333444544445679
Q ss_pred HHHhhhcccchhHHHHHHHHHHHHHHHHHhc---CHHHHHHHhhhcccc
Q psy5190 231 VKLRFLDENRIKVMHKQLLLFHNAISAYFSG---NEPGLQATLKQFNIK 276 (292)
Q Consensus 231 vKLdLLdenRvkvm~~QL~~~~nAl~ay~sg---n~~~Le~tl~~F~i~ 276 (292)
.++.-|++.|++.|...|..|++.++....- +.+.+..++....++
T Consensus 189 ~~~Q~lEe~Ri~~~k~~l~~y~~~~~~~~~~~~~~~e~~~~~~~~id~~ 237 (261)
T cd07648 189 KRFQEIEESHLRQMKEFLASYAEVLSENHSAVGQVHEEFKRQVDELTVD 237 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhCCHH
Confidence 9999999999999999999999999887664 444444444444443
No 48
>KOG3771|consensus
Probab=97.55 E-value=0.0065 Score=61.41 Aligned_cols=182 Identities=16% Similarity=0.229 Sum_probs=114.6
Q ss_pred hHHHHHHHHHHhCCCCccCchhhhHHH--H--------HHHHHHHHHHHHHHHHhhcChhhHHHHhhc------hh-hhh
Q psy5190 77 YKCTRQIMYEKLGKSTRTVDSDLKSRV--L--------VIFFLQQTLGEAFADLAQKSPELQEEFLCN------SE-TQR 139 (292)
Q Consensus 77 yk~TKQ~l~EklGk~~~TvD~ELeakI--l--------~l~qtq~~lgd~F~~Ls~kEpeL~~eF~~n------ae-tqr 139 (292)
.--+++.|..++|++.+|.|.+.|-.. | .|.+--+.|.++.+.+-.-+-.|.+....+ |. ...
T Consensus 10 ~sRa~ekvlqk~g~~~~TkD~~FE~~~~~f~~~e~e~~kLqkd~k~y~~av~am~~a~~~l~e~l~eiy~p~~~g~~~l~ 89 (460)
T KOG3771|consen 10 LNRAPEKVLQKLGKVDETKDEQFEQEERNFNKQEAEGKRLQKDLKNYLDAVRAMLAASKKLAESLQEIYEPDWPGRDYLQ 89 (460)
T ss_pred hccccHHHHhhcCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccHHHHH
Confidence 345789999999999999999999776 2 111111223333333322222222211111 11 112
Q ss_pred hhhHhhHHHHHhH-----HHHHHhHHHhhhhhhhhHHHHHHHHHHhhHhHHHHHhhHHHhhccccCcccccchHHHHHHH
Q psy5190 140 NLTGTGEILLNAL-----NLFVSSVNTLCNKTIEDTLVTVRQYENARVEYDAYRTDLELLLQVTSNVDSNCSHLDEAQRN 214 (292)
Q Consensus 140 ~m~k~G~~Ll~aL-----~~f~sdl~Tf~~KAI~DTllTIkkYE~AR~EYdAyrl~leem~~e~~~~~~~l~r~etaqr~ 214 (292)
++..+-..|..-+ ...+.-|.+|+. -++|...-|.+=....+.||+.|..++.++.... ....+..+|+.+
T Consensus 90 ~v~~~~d~l~~d~~~~l~d~vl~pl~~~~~-~fpdik~~i~KR~~Kl~DyD~~r~~~~kvq~~k~---kd~~k~~KAeeE 165 (460)
T KOG3771|consen 90 AVADNDDLLWKDLDQKLVDQVLLPLDTYLG-QFPDIKKAIAKRGRKLVDYDSARHSFEKLQAKKK---KDEAKLAKAEEE 165 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHhhh-hchhHHHHHHhhcchhhhhHHHHHHHHHHHHhcC---CChhhhHHHHHH
Confidence 2222222222111 123334455555 7888888899999999999999988877775553 345677889999
Q ss_pred HHHHHHHHHhHHhHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHhcC
Q psy5190 215 FQTHRENFEKLRNDVVVKLRFLDENRIKVMHKQLLLFHNAISAYFSGN 262 (292)
Q Consensus 215 ~q~aK~rFdKLR~DV~vKLdLLdenRvkvm~~QL~~~~nAl~ay~sgn 262 (292)
++.++.-|+-|-.+++.=|=-|=..||--+.--++.|-+.=..||..-
T Consensus 166 l~~Aq~~fE~lN~~L~eELP~L~~sRv~f~vp~Fqsl~~~q~vf~~Em 213 (460)
T KOG3771|consen 166 LEKAQQVFEELNNELLEELPALYSSRVGFFVPTFQSLFNLQLVFHKEM 213 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHHHHH
Confidence 999999999999999888888888887766666665555555555544
No 49
>cd07674 F-BAR_FCHO1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 1 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FCH domain Only 1 (FCHO1) may be involved in clathrin-coated vesicle formation. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO2 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=97.54 E-value=0.0083 Score=55.76 Aligned_cols=171 Identities=12% Similarity=0.196 Sum_probs=114.8
Q ss_pred HHHHHHHHHHHHHHHHhhc---Chh---hHHHHhhchhhhhhhhHhhHHHHHhHHHHHHhHHHhhhhh-------hh---
Q psy5190 105 VIFFLQQTLGEAFADLAQK---SPE---LQEEFLCNSETQRNLTGTGEILLNALNLFVSSVNTLCNKT-------IE--- 168 (292)
Q Consensus 105 ~l~qtq~~lgd~F~~Ls~k---Epe---L~~eF~~naetqr~m~k~G~~Ll~aL~~f~sdl~Tf~~KA-------I~--- 168 (292)
+-+.+.+.|+..+..||.. .++ |...|...-.....|+.....|...|.-++.+|..|..+- .+
T Consensus 30 eRa~IEe~Yak~L~klak~~~~~~e~Gtl~~~w~~~~~~~E~~a~~H~~l~~~L~~~~~~i~~~~~~~~k~~kk~~e~~~ 109 (261)
T cd07674 30 ERAAIEETYSKSMSKLSKMASNGSPLGTFAPMWEVFRVSSDKLALCHLELMRKLNDLIKDINRYGDEQVKIHKKTKEEAI 109 (261)
T ss_pred HHHHHHHHHHHHHHHHHhcccCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566777888888888841 222 4445555555556677777777777777777777665432 22
Q ss_pred hH-------HHHHHHHHHhhHhHHHHHhhHHHhhccccCcccccc----hHHHHHHHHHHHHHHHHhHHhH-------HH
Q psy5190 169 DT-------LVTVRQYENARVEYDAYRTDLELLLQVTSNVDSNCS----HLDEAQRNFQTHRENFEKLRND-------VV 230 (292)
Q Consensus 169 DT-------llTIkkYE~AR~EYdAyrl~leem~~e~~~~~~~l~----r~etaqr~~q~aK~rFdKLR~D-------V~ 230 (292)
+| ....+..+.||=-|...|.+.+.+.....+ ...+. |.+.|...++.+.++|.+-+.+ |+
T Consensus 110 ~~~~~~q~~q~~~~~l~kaK~~Y~~~cke~e~a~~~~~s-~k~leK~~~K~~ka~~~y~~~~~ky~~~~~~~~~~m~~~~ 188 (261)
T cd07674 110 GTLEAVQSLQVQSQHLQKSRENYHSKCVEQERLRREGVP-QKELEKAELKTKKAAESLRGSVEKYNRARGDFEQKMLESA 188 (261)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 234566788899999999998887632211 12233 3456666677777777776665 57
Q ss_pred HHHhhhcccchhHHHHHHHHHHHHHHHHHh---cCHHHHHHHhhhcccc
Q psy5190 231 VKLRFLDENRIKVMHKQLLLFHNAISAYFS---GNEPGLQATLKQFNIK 276 (292)
Q Consensus 231 vKLdLLdenRvkvm~~QL~~~~nAl~ay~s---gn~~~Le~tl~~F~i~ 276 (292)
.+++-+|+.|++-|...|+.|.+.++.... .+.+.+..++....++
T Consensus 189 ~~~Q~~Ee~Ri~~lk~~L~~~~~~~~~~~~~~~~~~e~~~~~l~~id~~ 237 (261)
T cd07674 189 QKFQDIEETHLRHMKLLIKGYSHSVEDTHVQIGQVHEEFKQNVENVGVE 237 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHhCCHH
Confidence 999999999999999999999998766543 3556666666665554
No 50
>cd07615 BAR_Endophilin_A3 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins localized at synapses that interacts with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated e
Probab=97.54 E-value=0.0025 Score=58.94 Aligned_cols=193 Identities=13% Similarity=0.142 Sum_probs=127.6
Q ss_pred hhhhhhhhhcccchhHHHHHHHHHHhCCCCccCchhhhHHH-H----------HHHHHHHHHHHHHHHHhhcCh---hhH
Q psy5190 63 VSKIESIKNWGISTYKCTRQIMYEKLGKSTRTVDSDLKSRV-L----------VIFFLQQTLGEAFADLAQKSP---ELQ 128 (292)
Q Consensus 63 ~~k~~~~k~W~~~tyk~TKQ~l~EklGk~~~TvD~ELeakI-l----------~l~qtq~~lgd~F~~Ls~kEp---eL~ 128 (292)
-.|.|..+.|.-+-++-|.-.|. +..++++++=.-= + ..-+....||++|-+-|..=+ .++
T Consensus 13 e~~~d~t~~~~~~l~~~t~~~Lq-----pNP~~r~~~~~~~~~~k~~g~~k~~~~p~~~~~Lg~~M~~~G~~lg~dS~~G 87 (223)
T cd07615 13 ERKIDVTNKVVAELLSKTTEYLQ-----PNPAYRAKLGMLNTVSKIRGQVKTTGYPQTEGLLGDCMLRYGRELGEESTFG 87 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC-----CCchhhHHHHHHHHHHHHhcccccCCCCCchhHHHHHHHHHHhhCCCCChHH
Confidence 35677778887776666655544 1112221110000 0 012223567777777766332 388
Q ss_pred HHHhhchhhhhhhhHhhHHHH-HhHHHHHHhHHHhhhhhhhhHHHHHHHHHHhhHhHHHHHhhHHHhhccccCcccccch
Q psy5190 129 EEFLCNSETQRNLTGTGEILL-NALNLFVSSVNTLCNKTIEDTLVTVRQYENARVEYDAYRTDLELLLQVTSNVDSNCSH 207 (292)
Q Consensus 129 ~eF~~naetqr~m~k~G~~Ll-~aL~~f~sdl~Tf~~KAI~DTllTIkkYE~AR~EYdAyrl~leem~~e~~~~~~~l~r 207 (292)
..+..+|++++-+......+. ..-.-|+.-|.+|.+.-|.....-=|+.++.|+.||+....+ + ..+
T Consensus 88 ~aL~~~G~A~~kla~~~~~~~~~v~~~fl~pL~~~l~~dik~i~k~RKkLe~rRLd~D~~K~r~---~------k~~--- 155 (223)
T cd07615 88 NALLDVGESMKQMAEVKDSLDINVKQNFIDPLQLLQDKDLKEIGHHLKKLEGRRLDFDYKKKRQ---G------KIP--- 155 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---C------CCc---
Confidence 899999999887777666555 455678888889999999999999999999999999865443 1 111
Q ss_pred HHHHHHHHHHHHHHHHhHHhHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHhcCHHHHHHHhhhccccc
Q psy5190 208 LDEAQRNFQTHRENFEKLRNDVVVKLRFLDENRIKVMHKQLLLFHNAISAYFSGNEPGLQATLKQFNIKT 277 (292)
Q Consensus 208 ~etaqr~~q~aK~rFdKLR~DV~vKLdLLdenRvkvm~~QL~~~~nAl~ay~sgn~~~Le~tl~~F~i~~ 277 (292)
...++.|+.+|+.=+.|+..=|.=+=++-+. ...+|..|..|-+.||..|.+.|+.....+.-++
T Consensus 156 ----~eE~~~A~~kfees~E~a~~~M~n~le~e~e-~~~~L~~lv~AQl~Yh~~a~eiL~~l~~~l~~~~ 220 (223)
T cd07615 156 ----DEEIRQAVEKFEESKELAERSMFNFLENDVE-QVSQLSVLIEAALDYHRQSTEILEDLQSKLQNRI 220 (223)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHcChH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446666666666666665555444444333 3468999999999999999999999877665433
No 51
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=97.54 E-value=0.019 Score=53.35 Aligned_cols=163 Identities=10% Similarity=0.159 Sum_probs=117.3
Q ss_pred HHHHHHHHHHHHHHHHhh-cC-hhhHHHHhhchhhhhhhhH----hh----HHHHHhHHHHHHhHHHhhhhhhhhHHHHH
Q psy5190 105 VIFFLQQTLGEAFADLAQ-KS-PELQEEFLCNSETQRNLTG----TG----EILLNALNLFVSSVNTLCNKTIEDTLVTV 174 (292)
Q Consensus 105 ~l~qtq~~lgd~F~~Ls~-kE-peL~~eF~~naetqr~m~k----~G----~~Ll~aL~~f~sdl~Tf~~KAI~DTllTI 174 (292)
++...-..||.++..||. ++ +.|+..|+..|+.+..+.. +. .+|-.+|.-.+..++-... ++.+=.--.
T Consensus 54 ela~~~~efa~s~~~L~~~E~~~~ls~~l~~laev~~ki~~~~~~qa~~d~~~l~e~L~eYiR~i~svK~-~f~~R~k~~ 132 (234)
T cd07664 54 ELSANTAAFAKSAAMLGNSEDHTALSRALSQLAEVEEKIDQLHQDQAFADFYLFSELLGDYIRLIAAVKG-VFDQRMKCW 132 (234)
T ss_pred HHHHHHHHHHHHHHHHHcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHH-HHHHHHHHH
Confidence 566666778899999998 33 4599999999988755442 22 3555677766666665544 555555667
Q ss_pred HHHHHhhHhHHHHHhhHHHhhccccC--cccccchHHHHHHHHHHHHHHHHhHHhHHHHHHhhhcccchhHHHHHHHHHH
Q psy5190 175 RQYENARVEYDAYRTDLELLLQVTSN--VDSNCSHLDEAQRNFQTHRENFEKLRNDVVVKLRFLDENRIKVMHKQLLLFH 252 (292)
Q Consensus 175 kkYE~AR~EYdAyrl~leem~~e~~~--~~~~l~r~etaqr~~q~aK~rFdKLR~DV~vKLdLLdenRvkvm~~QL~~~~ 252 (292)
..|..|.-+....+..+..+.....+ ....-.-|+.+++.+..++..|+.+..-+-.=|+=++..|+.+|...|..|.
T Consensus 133 ~~~~~a~~~L~kkr~~~~Kl~~~~k~dK~~~~~~ev~~~e~~~~~a~~~fe~Is~~~k~El~rFe~er~~dfk~~l~~fl 212 (234)
T cd07664 133 QKWQDAQVTLQKKREAEAKLQYANKPDKLQQAKDEIKEWEAKVQQGERDFEQISKTIRKEVGRFEKERVKDFKTVIIKYL 212 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888887777777666666432111 0001123556788888999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCHHHHHH
Q psy5190 253 NAISAYFSGNEPGLQA 268 (292)
Q Consensus 253 nAl~ay~sgn~~~Le~ 268 (292)
.+...|...+.+.-+.
T Consensus 213 es~ie~qke~ie~We~ 228 (234)
T cd07664 213 ESLVQTQQQLIKYWEA 228 (234)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999887766555444
No 52
>cd07619 BAR_Rich2 The Bin/Amphiphysin/Rvs (BAR) domain of RhoGAP interacting with CIP4 homologs protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. RhoGAP interacting with CIP4 homologs protein 2 (Rich2) is a Rho GTPase activating protein that interacts with CD317, a lipid raft-associated integral membrane protein. It plays a role in actin cytoskeleton organization and the maintenance of microvilli in polarized epithelial cells. Rich2 contains an N-terminal BAR domain followed by a GAP domain for Rho and Rac GTPases and a C-terminal proline-rich domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=97.52 E-value=0.015 Score=54.64 Aligned_cols=198 Identities=17% Similarity=0.166 Sum_probs=130.1
Q ss_pred hhhhhhhhhcccchhHHHHHHHHHHhCCCCccCchhhhHHH--HHHHHHHHHHHHHHHHHhhc---ChhhHHHHhhchhh
Q psy5190 63 VSKIESIKNWGISTYKCTRQIMYEKLGKSTRTVDSDLKSRV--LVIFFLQQTLGEAFADLAQK---SPELQEEFLCNSET 137 (292)
Q Consensus 63 ~~k~~~~k~W~~~tyk~TKQ~l~EklGk~~~TvD~ELeakI--l~l~qtq~~lgd~F~~Ls~k---EpeL~~eF~~naet 137 (292)
-.|+|..|+|.-+..+.|.-.| -+..++|+| .+. +- +..||+++-+-|.. +..++..+...|++
T Consensus 21 e~r~D~~k~~~~~i~kk~~~~L-----Qpnp~~r~e--kr~~k~P----~~~L~q~M~~~g~elg~~s~lg~aL~~~gea 89 (248)
T cd07619 21 EKRLELVKQVSHSTHKKLTACL-----QGQQGVDAD--KRSKKLP----LTTLAQCMVEGAAVLGDDSLLGKMLKLCGET 89 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-----CCCcHHHHH--HhccCCC----HHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Confidence 4678899999888777765544 244466665 111 21 22455555554443 22388899999999
Q ss_pred hhhhhHhhHHHH-HhHHHHHHhHHHhhhhhhhhHHHHHHHHHHhhHhHHHHHhhHHHhhcccc---CcccccchHHHHHH
Q psy5190 138 QRNLTGTGEILL-NALNLFVSSVNTLCNKTIEDTLVTVRQYENARVEYDAYRTDLELLLQVTS---NVDSNCSHLDEAQR 213 (292)
Q Consensus 138 qr~m~k~G~~Ll-~aL~~f~sdl~Tf~~KAI~DTllTIkkYE~AR~EYdAyrl~leem~~e~~---~~~~~l~r~etaqr 213 (292)
++.|..-...+. ..=..|+.=+++++++-|+....-=|+.+..|++||+.+..++....... +....-.+.+..+.
T Consensus 90 ~~kla~a~~~~d~~i~~~fl~PL~~~le~dlk~I~k~RK~Le~~RLD~D~~K~r~~~a~~~~~~~~~~~~~~~k~e~lr~ 169 (248)
T cd07619 90 EDKLAQELILFELQIERDVVEPLYVLAEVEIPNIQKQRKHLAKLVLDMDSSRTRWQQSSKSSGLSSNLQPTGAKADALRE 169 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHhhHHHHHHHHHhccccccccccccCCCCccHHHHH
Confidence 888876555444 44467888899999999999999999999999999999998875432111 11111223445555
Q ss_pred HHHHHHHHHHhHHhHH-HHHHhhhcccchhHHHHHHHHHHHHHHHHHhcCHHHHHHHhhhc
Q psy5190 214 NFQTHRENFEKLRNDV-VVKLRFLDENRIKVMHKQLLLFHNAISAYFSGNEPGLQATLKQF 273 (292)
Q Consensus 214 ~~q~aK~rFdKLR~DV-~vKLdLLdenRvkvm~~QL~~~~nAl~ay~sgn~~~Le~tl~~F 273 (292)
...++-.+|+.=|.-. ..=+.||+ ++-....+|..|..|-+.||....+.|+..+..+
T Consensus 170 e~E~ae~~~e~~kd~~~~~m~~~l~--~e~e~~~~l~~Lv~AQleYHr~A~eiLe~l~~~i 228 (248)
T cd07619 170 EMEEAANRMEICRDQLSADMYSFVA--KEIDYANYFQTLIEVQAEYHRKSLELLQSVLPQI 228 (248)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555322111 11123332 3445667899999999999999999999987654
No 53
>cd07621 BAR_SNX5_6 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 5 and 6. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Members of this subfamily include SNX5, SNX6, the mammalian SNX32, and similar proteins. SNX5 and SNX6 may be components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. The function of SNX32 is still unknown. BAR domain
Probab=97.44 E-value=0.063 Score=49.66 Aligned_cols=171 Identities=16% Similarity=0.159 Sum_probs=112.4
Q ss_pred HhCCCCccCchhhhHHH------------H-----HHHHHHH-------HHHHHHHHHhhcChh-hHHHHhhchhhhhhh
Q psy5190 87 KLGKSTRTVDSDLKSRV------------L-----VIFFLQQ-------TLGEAFADLAQKSPE-LQEEFLCNSETQRNL 141 (292)
Q Consensus 87 klGk~~~TvD~ELeakI------------l-----~l~qtq~-------~lgd~F~~Ls~kEpe-L~~eF~~naetqr~m 141 (292)
.++.+.+-+|...|.+- + .++..++ .||.+++.||--|+. |+..|+..|+..-.|
T Consensus 14 v~~~~~~d~D~~Fe~~k~~l~~l~~~Lk~~~~~~~~lv~~rkela~~~~~fs~al~~L~~~E~t~L~~~ls~lae~~ek~ 93 (219)
T cd07621 14 LLLSGQKDVDEFFEQEKNFLVEYHNRIKDATAKADKMTRKHKDVADSYIKISAALTQLATSEPTPLDKFLLKVAETFEKL 93 (219)
T ss_pred HHcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHH
Confidence 34455667777766655 1 3444444 556666667765544 888899888876444
Q ss_pred hHh----h----HHHHHhHHHHHHhHHHhhhhhhhhHHHHHHHHHHhhHhHHHHHhhHHHhhccccCcccccchHHHHHH
Q psy5190 142 TGT----G----EILLNALNLFVSSVNTLCNKTIEDTLVTVRQYENARVEYDAYRTDLELLLQVTSNVDSNCSHLDEAQR 213 (292)
Q Consensus 142 ~k~----G----~~Ll~aL~~f~sdl~Tf~~KAI~DTllTIkkYE~AR~EYdAyrl~leem~~e~~~~~~~l~r~etaqr 213 (292)
.+- . ..|-..|...+.+++- .+.+..+=-.|=-+|..+-..++.... ...+|..|..
T Consensus 94 ~~l~~r~A~~d~l~L~e~L~~Y~r~~~A--------~K~~l~rR~ral~~~q~A~k~L~KaR~-------k~~~v~~AE~ 158 (219)
T cd07621 94 RKLEGRVASDEDLKLSDTLRYYMRDTQA--------AKDLLYRRLRCLANYENANKNLEKARA-------KNKDVHAAEA 158 (219)
T ss_pred HHHHHHHHHhhHhHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHhHh-------chhhHHHHHH
Confidence 432 1 2444555555554443 222222222222233333322222221 1156777888
Q ss_pred HHHHHHHHHHhHHhHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHhcCHHHHHHHhhh
Q psy5190 214 NFQTHRENFEKLRNDVVVKLRFLDENRIKVMHKQLLLFHNAISAYFSGNEPGLQATLKQ 272 (292)
Q Consensus 214 ~~q~aK~rFdKLR~DV~vKLdLLdenRvkvm~~QL~~~~nAl~ay~sgn~~~Le~tl~~ 272 (292)
..++++.+|+++=.-+-.=|.=++..||.+|.+.|.-|..........+++.|..++..
T Consensus 159 ~~~~a~~~Fe~iS~~~k~El~rF~~~Rv~~fk~~lve~aE~~ik~Ak~~~~~l~~~~~~ 217 (219)
T cd07621 159 AQQEACEKFESMSESAKQELLDFKTRRVAAFRKNLVELAELEIKHAKAQIQLLKNCLAA 217 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999998888888889999999999999999999999999999999988754
No 54
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=97.43 E-value=0.02 Score=53.25 Aligned_cols=163 Identities=10% Similarity=0.167 Sum_probs=113.6
Q ss_pred HHHHHHHHHHHHHHHHhhcC--hhhHHHHhhchhhhhhhhH----hhH----HHHHhHHHHHHhHHHhhhhhhhhHHHHH
Q psy5190 105 VIFFLQQTLGEAFADLAQKS--PELQEEFLCNSETQRNLTG----TGE----ILLNALNLFVSSVNTLCNKTIEDTLVTV 174 (292)
Q Consensus 105 ~l~qtq~~lgd~F~~Ls~kE--peL~~eF~~naetqr~m~k----~G~----~Ll~aL~~f~sdl~Tf~~KAI~DTllTI 174 (292)
+|...-..||.++..||.-| +.|+..|+..|+.+..+.. +.. +|-.+|.-.+.-|+-... ++.+=.-..
T Consensus 54 eLa~~~~eFa~s~~~L~~~E~~~~Ls~als~laev~~~i~~~~~~qa~qd~~~f~e~l~eYiRli~SVK~-~f~~R~k~~ 132 (234)
T cd07665 54 ELALNTALFAKSLAMLGSSEDNTALSRALSQLAEVEEKIEQLHQEQANNDFFLLAELLADYIRLLSAVRG-AFDQRMKTW 132 (234)
T ss_pred HHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-HHHHHHHHH
Confidence 46666667889999999855 4599999999988755543 332 333444444443433332 555555667
Q ss_pred HHHHHhhHhHHHHHhhHHHhhccccC--cccccchHHHHHHHHHHHHHHHHhHHhHHHHHHhhhcccchhHHHHHHHHHH
Q psy5190 175 RQYENARVEYDAYRTDLELLLQVTSN--VDSNCSHLDEAQRNFQTHRENFEKLRNDVVVKLRFLDENRIKVMHKQLLLFH 252 (292)
Q Consensus 175 kkYE~AR~EYdAyrl~leem~~e~~~--~~~~l~r~etaqr~~q~aK~rFdKLR~DV~vKLdLLdenRvkvm~~QL~~~~ 252 (292)
..|.+|.-++...+..+..+.....+ ......-+.++++.+..++.+|+.+-.-+-.=|+=++..|+.+|...+..|.
T Consensus 133 ~~~~~~~~~l~kKr~~~~Kl~~~~~~dK~~~a~~Ev~e~e~k~~~a~~~fe~is~~ik~El~rFe~er~~Dfk~~v~~fl 212 (234)
T cd07665 133 QRWQDAQAMLQKKREAEARLLWANKPDKLQQAKDEIAEWESRVTQYERDFERISATVRKEVIRFEKEKSKDFKNHIIKYL 212 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777877777777666666432221 0011123556788999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCHHHHHH
Q psy5190 253 NAISAYFSGNEPGLQA 268 (292)
Q Consensus 253 nAl~ay~sgn~~~Le~ 268 (292)
.++......+.+.-+.
T Consensus 213 es~ie~qke~ie~We~ 228 (234)
T cd07665 213 ETLLHSQQQLVKYWEA 228 (234)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9998877666554443
No 55
>cd07662 BAR_SNX6 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 6. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX6 forms a stable complex with SNX1 and may be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It interacts with the receptor serine/threonine kinases from the transforming growth factor-beta family. It also plays
Probab=97.42 E-value=0.031 Score=51.79 Aligned_cols=154 Identities=18% Similarity=0.165 Sum_probs=108.6
Q ss_pred HHHHHHHHHHHHHHHHhhcChh-hHHHHhhchhhhhhh----hHh----hHHHHHhHHHHHHhHHHhhhhhhhhHHHHHH
Q psy5190 105 VIFFLQQTLGEAFADLAQKSPE-LQEEFLCNSETQRNL----TGT----GEILLNALNLFVSSVNTLCNKTIEDTLVTVR 175 (292)
Q Consensus 105 ~l~qtq~~lgd~F~~Ls~kEpe-L~~eF~~naetqr~m----~k~----G~~Ll~aL~~f~sdl~Tf~~KAI~DTllTIk 175 (292)
+++...-.+|.+|+.||--|+. |...|...++..-.+ ..+ -.+|-..|...+.+++..-. .+..=.--..
T Consensus 55 ~la~~~~~~s~sl~~L~~~e~t~L~~~l~~laev~eki~~l~~~~A~~e~l~L~e~L~~Y~r~~~A~Kd-ll~rR~r~l~ 133 (218)
T cd07662 55 SAADDYNRIGSSLYTLGTQDSTDICKFFLKVSELFDKTRKIEARVAADEDLKLSDLLKYYLRESQAAKD-LLYRRSRSLV 133 (218)
T ss_pred HHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 4666666788899999987776 888888888765333 222 23555666666655554332 1222222233
Q ss_pred HHHHhhHhHHHHHhhHHHhhccccCcccccchHHHHHHHHHHHHHHHHhHHhHHHHHHhhhcccchhHHHHHHHHHHHHH
Q psy5190 176 QYENARVEYDAYRTDLELLLQVTSNVDSNCSHLDEAQRNFQTHRENFEKLRNDVVVKLRFLDENRIKVMHKQLLLFHNAI 255 (292)
Q Consensus 176 kYE~AR~EYdAyrl~leem~~e~~~~~~~l~r~etaqr~~q~aK~rFdKLR~DV~vKLdLLdenRvkvm~~QL~~~~nAl 255 (292)
.|++|.---+..|.. -.-+..+++.+++++++|+++=.-+-+=|.=++..||+.|.+.|.-|....
T Consensus 134 ~~enA~k~L~KaR~~--------------~kev~~aE~~~~~a~~~Fe~IS~~aK~El~rF~~~Rv~~Fkk~Lv~y~E~~ 199 (218)
T cd07662 134 DYENANKALDKARAK--------------NKDVLQAETTQQLCCQKFEKISESAKQELIDFKTRRVAAFRKNLVELAELE 199 (218)
T ss_pred HHHHHHHHHHHHHHc--------------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444333333222 134667889999999999999999988888899999999999999999999
Q ss_pred HHHHhcCHHHHHHHhhhc
Q psy5190 256 SAYFSGNEPGLQATLKQF 273 (292)
Q Consensus 256 ~ay~sgn~~~Le~tl~~F 273 (292)
......+.+.|..++..+
T Consensus 200 lkhak~~~~~~~~~~~~l 217 (218)
T cd07662 200 LKHAKGNLQLLQSCLAVL 217 (218)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 999999999999987654
No 56
>cd07599 BAR_Rvs167p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 167 and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 167 (Rvs167p) and Schizosaccharomyces pombe Hob1 (homolog of Bin1). S. cerevisiae Rvs167p plays a role in regulation of the actin cytoskeleton, endocytosis, and sporulation. It forms a heterodimer with another BAR domain protein Rvs161p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. Rvs167p also interacts with the GTPase activating protein (GAP) Gyp5p, which is involved in ER to Golgi vesicle trafficking. BAR domains fo
Probab=97.38 E-value=0.025 Score=50.88 Aligned_cols=163 Identities=15% Similarity=0.128 Sum_probs=112.9
Q ss_pred HHHHHHHHHHHHHHHHhhcChhhH-------------HHHhhchhhhhhhhHhhHHHHHhH-HHHHHhHHHhhhhhhhhH
Q psy5190 105 VIFFLQQTLGEAFADLAQKSPELQ-------------EEFLCNSETQRNLTGTGEILLNAL-NLFVSSVNTLCNKTIEDT 170 (292)
Q Consensus 105 ~l~qtq~~lgd~F~~Ls~kEpeL~-------------~eF~~naetqr~m~k~G~~Ll~aL-~~f~sdl~Tf~~KAI~DT 170 (292)
.+...|..+++.|..+-.-..... ..+.....+...|.......+.++ ..++.=+.+|+. -+++.
T Consensus 34 ~l~~~~~~~~~~~~~ly~p~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~l~~~~~~~l~~i~~~V~~P~~~~~~-~~~~i 112 (216)
T cd07599 34 SILTHQIAFAKEFAELYDPIVGPKESVGSHPAPESTLARLSRYVKALEELKKELLEELEFFEERVILPAKELKK-YIKKI 112 (216)
T ss_pred HHHHHHHHHHHHHHHHhCCcCCCCcCcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 577888888888888764211111 122222222222222222222222 133444455554 78999
Q ss_pred HHHHHHHHHhhHhHHHHHhhHHH-hhccccCcccccchHHHHHHHHHHHHHHHHhHHhHHHHHHhhhcccchhHHHHHHH
Q psy5190 171 LVTVRQYENARVEYDAYRTDLEL-LLQVTSNVDSNCSHLDEAQRNFQTHRENFEKLRNDVVVKLRFLDENRIKVMHKQLL 249 (292)
Q Consensus 171 llTIkkYE~AR~EYdAyrl~lee-m~~e~~~~~~~l~r~etaqr~~q~aK~rFdKLR~DV~vKLdLLdenRvkvm~~QL~ 249 (292)
..+|++=+..+++||.++..++. +..........-.++.++++.+..+++.|+.|-..+..=|=-|-+.+...+..-+.
T Consensus 113 ~k~IkKR~~k~lDyd~~~~k~~k~~~~k~~~~~kd~~kl~kae~~l~~a~~~y~~lN~~Lk~eLP~l~~~~~~~~~~~~~ 192 (216)
T cd07599 113 RKTIKKRDHKKLDYDKLQNKLNKLLQKKKELSLKDEKQLAKLERKLEEAKEEYEALNELLKSELPKLLALADEFLPPLFK 192 (216)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999 76543212234467888999999999999999999988888888899999998888
Q ss_pred HHHHHHHHHHhcCHHHHHH
Q psy5190 250 LFHNAISAYFSGNEPGLQA 268 (292)
Q Consensus 250 ~~~nAl~ay~sgn~~~Le~ 268 (292)
.|.-....||...+..|..
T Consensus 193 ~~~~~ql~~~~~~~~~l~~ 211 (216)
T cd07599 193 SFYYIQLNIYYTLHEYLQE 211 (216)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 8888888888877766654
No 57
>cd07630 BAR_SNX_like The Bin/Amphiphysin/Rvs (BAR) domain of uncharacterized Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of uncharacterized proteins with similarity to sorting nexins (SNXs), which are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=97.35 E-value=0.043 Score=49.69 Aligned_cols=148 Identities=13% Similarity=0.088 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHHHHHhhcC--h--hhHHHHhhchhhhhhhh----Hhh----HHHHHhHHHHHHhHHHhhhhhhhhHHHH
Q psy5190 106 IFFLQQTLGEAFADLAQKS--P--ELQEEFLCNSETQRNLT----GTG----EILLNALNLFVSSVNTLCNKTIEDTLVT 173 (292)
Q Consensus 106 l~qtq~~lgd~F~~Ls~kE--p--eL~~eF~~naetqr~m~----k~G----~~Ll~aL~~f~sdl~Tf~~KAI~DTllT 173 (292)
+....-.||.++..||.-| | .|+..|+..++.+-.+. ++. .+|-.+|...+..++ -.+..
T Consensus 37 la~~~~~fs~al~~L~~~E~~~~~~l~~~l~~lse~~e~i~~~~~~~a~~d~~~Lg~~L~~Y~r~i~--------a~K~~ 108 (198)
T cd07630 37 LANALGHLSSSLQLCVGLDEASVVALNRLCTKLSEALEEAKENIEVVAGNNENTLGLTLDLYSRYSE--------SEKDM 108 (198)
T ss_pred HHHHHHHHHHHHHHHhcccccchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH--------HHHHH
Confidence 3444445666666677655 4 57888888887653333 333 344444444444333 22222
Q ss_pred HHHHHHhhHhHHHHHhhHHHhhccccCcccccchHHHHHHHHHHHHHHHHhHHhHHHHHHhhhcccchhHHHHHHHHHHH
Q psy5190 174 VRQYENARVEYDAYRTDLELLLQVTSNVDSNCSHLDEAQRNFQTHRENFEKLRNDVVVKLRFLDENRIKVMHKQLLLFHN 253 (292)
Q Consensus 174 IkkYE~AR~EYdAyrl~leem~~e~~~~~~~l~r~etaqr~~q~aK~rFdKLR~DV~vKLdLLdenRvkvm~~QL~~~~n 253 (292)
..+=-.+-.+|......++.... .+...+...++.++.+|+++-.-.-.=|+=++..||.+|...|..|.-
T Consensus 109 l~~R~~~~~~~~~a~k~l~Kar~---------~k~~~ae~~~~~a~~~fe~iS~~~k~EL~rF~~~Rv~~fk~~l~~~~E 179 (198)
T cd07630 109 LFRRTCKLIEFENASKALEKAKP---------QKKEQAEEAKKKAETEFEEISSLAKKELERFHRQRVLELQSALVCYAE 179 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHH---------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22333333445555444443221 122346777888999999999999999999999999999999999999
Q ss_pred HHHHHHhcCHHHHHHHh
Q psy5190 254 AISAYFSGNEPGLQATL 270 (292)
Q Consensus 254 Al~ay~sgn~~~Le~tl 270 (292)
+..+....+.+.+..++
T Consensus 180 ~~i~~ak~~~~~~~~~~ 196 (198)
T cd07630 180 SQIKNAKEAAAVLTKTL 196 (198)
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 99999888888887765
No 58
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=97.35 E-value=0.033 Score=50.73 Aligned_cols=164 Identities=16% Similarity=0.199 Sum_probs=103.2
Q ss_pred HHHHHHHHHHHHHHHHhhcChh------hHHHHhhc-------hhhhhhhhHhhH-HHHHhHHHHHHhHHH-------hh
Q psy5190 105 VIFFLQQTLGEAFADLAQKSPE------LQEEFLCN-------SETQRNLTGTGE-ILLNALNLFVSSVNT-------LC 163 (292)
Q Consensus 105 ~l~qtq~~lgd~F~~Ls~kEpe------L~~eF~~n-------aetqr~m~k~G~-~Ll~aL~~f~sdl~T-------f~ 163 (292)
+-+.+.+.|+..+..|+.+-.. +...|... |+.|..+..+=. .+..+|..|..++.. ..
T Consensus 30 eRa~iE~eYak~L~kLakk~~~~~~~gsl~~a~~~i~~e~e~~a~~H~~~a~~L~~~v~~~l~~~~~~~~~~rK~~~~~~ 109 (236)
T cd07651 30 ERASIEEEYAKRLEKLSRKSLGGSEEGGLKNSLDTLRLETESMAKSHLKFAKQIRQDLEEKLAAFASSYTQKRKKIQSHM 109 (236)
T ss_pred HHHHHHHHHHHHHHHHHccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555667777777777764432 33333332 223333333322 344566666555443 33
Q ss_pred hhhhhhHHHHHHHHHHhhHhHHHHHhhHHHhhccccCc-ccccc----hHHHHHHHH--------------HHHHHHHHh
Q psy5190 164 NKTIEDTLVTVRQYENARVEYDAYRTDLELLLQVTSNV-DSNCS----HLDEAQRNF--------------QTHRENFEK 224 (292)
Q Consensus 164 ~KAI~DTllTIkkYE~AR~EYdAyrl~leem~~e~~~~-~~~l~----r~etaqr~~--------------q~aK~rFdK 224 (292)
.++.-+-..+++..+.||-.|...|..++.+....... ...+. |++.++..+ ...+..|..
T Consensus 110 ~k~~k~~~~~~~~l~KaK~~Y~~~c~~~e~~~~~~~~~~~ke~eK~~~k~~k~~~~~~~~~~~Y~~~v~~~~~~~~~~~~ 189 (236)
T cd07651 110 EKLLKKKQDQEKYLEKAREKYEADCSKINSYTLQSQLTWGKELEKNNAKLNKAQSSINSSRRDYQNAVKALRELNEIWNR 189 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666778899999999999999999877543221 11222 233333332 333334444
Q ss_pred HHhHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHhcCHHHHHH
Q psy5190 225 LRNDVVVKLRFLDENRIKVMHKQLLLFHNAISAYFSGNEPGLQA 268 (292)
Q Consensus 225 LR~DV~vKLdLLdenRvkvm~~QL~~~~nAl~ay~sgn~~~Le~ 268 (292)
==..++.+++-|++.|+..|...|+.|.|.++.-+-.+.+..+.
T Consensus 190 ~~~~~~~~~Q~lEe~Ri~~lk~~l~~~a~~~s~~cv~~d~~~e~ 233 (236)
T cd07651 190 EWKAALDDFQDLEEERIQFLKSNCWTFANNISTLCVDDDESCER 233 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHH
Confidence 44678999999999999999999999999999888777776654
No 59
>cd07633 BAR_OPHN1 The Bin/Amphiphysin/Rvs (BAR) domain of Oligophrenin-1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Oligophrenin-1 (OPHN1) is a GTPase activating protein (GAP) with activity towards RhoA, Rac, and Cdc42, that is expressed in developing spinal cord and in adult brain areas with high plasticity. It plays a role in regulating the actin cystoskeleton as well as morphology changes in axons and dendrites, and may also function in modulating neuronal connectivity. Mutations in the OPHN1 gene causes X-linked mental retardation associated with cerebellar hypoplasia, lateral ventricle enlargement and epilepsy. OPHN1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, and a Rho GAP domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=97.35 E-value=0.038 Score=50.86 Aligned_cols=159 Identities=14% Similarity=0.123 Sum_probs=133.8
Q ss_pred HHHHHHHHHHHHHHHHhhcC---hh------hHHHHhhchhhhhhhhHhhHHHHH-hHHHHHHhHHHhhhhhhhhHHHHH
Q psy5190 105 VIFFLQQTLGEAFADLAQKS---PE------LQEEFLCNSETQRNLTGTGEILLN-ALNLFVSSVNTLCNKTIEDTLVTV 174 (292)
Q Consensus 105 ~l~qtq~~lgd~F~~Ls~kE---pe------L~~eF~~naetqr~m~k~G~~Ll~-aL~~f~sdl~Tf~~KAI~DTllTI 174 (292)
.++.+|++|...+.+++... +. +.+.+..|+..-..|+.....|+. +=.-+++.|++|+-.-|.-++.+=
T Consensus 34 ~~s~A~r~Fa~~L~df~f~~igd~~tdde~~I~~sL~~F~~~L~~ie~~r~~l~d~aq~s~~~~L~~F~Kedi~~~Ke~K 113 (207)
T cd07633 34 EYSSAVQKFSQTLQSFQFDFIGDTLTDDEINIAESFKEFAELLQEVEEERMMMVQNASDLLIKPLENFRKEQIGFTKERK 113 (207)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 68889999999999887743 33 778899999988888877776664 446788999999999999999999
Q ss_pred HHHHHhhHhHHHHHhhHHHhhccccCcccccchHHHHHHHHHHHHHHHHhHHhHHHHHHhhhcccchhHHHHHHHHHHHH
Q psy5190 175 RQYENARVEYDAYRTDLELLLQVTSNVDSNCSHLDEAQRNFQTHRENFEKLRNDVVVKLRFLDENRIKVMHKQLLLFHNA 254 (292)
Q Consensus 175 kkYE~AR~EYdAyrl~leem~~e~~~~~~~l~r~etaqr~~q~aK~rFdKLR~DV~vKLdLLdenRvkvm~~QL~~~~nA 254 (292)
|+|+...=+|++.+.+--.++.-- .-.-+++|-..+..+|..|-..-.|=+-+|..+.+.+-=.+..-|+.|..|
T Consensus 114 K~FdK~se~~~~aL~k~a~~s~k~-----K~~e~eEA~~~L~~~r~~F~~~aLdYV~qI~~vQerKKfeive~mLsf~~a 188 (207)
T cd07633 114 KKFEKDSEKFYSLLDRHVNLSSKK-----KESQLQEADLQVDKERQNFYESSLEYVYQIQEVQESKKFDVVEPVLAFLHS 188 (207)
T ss_pred hhhhhhhhHHHHHHHHHhcccccC-----CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999977655553221 124678898999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCHHHHHH
Q psy5190 255 ISAYFSGNEPGLQA 268 (292)
Q Consensus 255 l~ay~sgn~~~Le~ 268 (292)
...||-.-++.++.
T Consensus 189 ~~tf~hqG~el~~d 202 (207)
T cd07633 189 LFTSNNLTVELTQD 202 (207)
T ss_pred HHHHHhhHHHHHHH
Confidence 99999877776655
No 60
>cd07598 BAR_FAM92 The Bin/Amphiphysin/Rvs (BAR) domain of Family with sequence similarity 92 (FAM92). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of proteins from the family with sequence similarity 92 (FAM92), which were originally identified by the presence of the unknown domain DUF1208. This domain shows similarity to the BAR domains of sorting nexins. Mammals contain at least two member types, FAM92A and FAM92B, which may exist in many variants. The Xenopus homolog of FAM92A1, xVAP019, is essential for embryo survival and cell differentiation. FAM92A1 may be involved in regulating cell proliferation and apoptosis. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=97.35 E-value=0.057 Score=49.44 Aligned_cols=158 Identities=13% Similarity=0.088 Sum_probs=113.1
Q ss_pred HHHHHHHHHHHHHHHHhhcCh-hhHHHHhhchhhhhhh----hHhhHHHHHhHHHHHHhHHHhhhhhhhhHHHHHHHHHH
Q psy5190 105 VIFFLQQTLGEAFADLAQKSP-ELQEEFLCNSETQRNL----TGTGEILLNALNLFVSSVNTLCNKTIEDTLVTVRQYEN 179 (292)
Q Consensus 105 ~l~qtq~~lgd~F~~Ls~kEp-eL~~eF~~naetqr~m----~k~G~~Ll~aL~~f~sdl~Tf~~KAI~DTllTIkkYE~ 179 (292)
.+...-..||.++..+|.-|+ .|+..++.++++-..| .++...+...+---+++-.+.|..+-.|-+. ...
T Consensus 36 ~L~~~~~~fak~~~~la~~E~~~L~~~L~~lae~~~~i~d~~q~qv~~l~~~v~epLk~Y~~l~k~~k~~~K~----~~~ 111 (211)
T cd07598 36 RLRDKGDELAKSINAYADTENPSLKQGLKNFAECLAALQDYRQAEVERLEAKVVQPLALYGTICKHARDDLKN----TFT 111 (211)
T ss_pred HHHHhHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHH
Confidence 344445578888899998665 4999999998765444 4566666666666666667777555555433 333
Q ss_pred hhHhHHHHHhhHHHhhccccCcccccchHHHHHHHHHHHHHHHHhHHhHHHHHHhhhcccchhHHHHHHHHHHHHHHHHH
Q psy5190 180 ARVEYDAYRTDLELLLQVTSNVDSNCSHLDEAQRNFQTHRENFEKLRNDVVVKLRFLDENRIKVMHKQLLLFHNAISAYF 259 (292)
Q Consensus 180 AR~EYdAyrl~leem~~e~~~~~~~l~r~etaqr~~q~aK~rFdKLR~DV~vKLdLLdenRvkvm~~QL~~~~nAl~ay~ 259 (292)
||-.=..-+..++.+....++ ..-.+..+.+.++.++..|++....+..-|+=++..|+++|...|..|..+.+.|+
T Consensus 112 ar~~~~~~~~~leklk~~~~~---d~~~i~eaE~~l~~a~~d~~r~s~~l~ee~~rFe~~k~~d~K~~l~~fv~~~m~~~ 188 (211)
T cd07598 112 ARNKELKQLKQLEKLRQKNPS---DRQIISQAESELQKASVDANRSTKELEEQMDNFEKQKIRDIKTIFSDFVLIEMLFH 188 (211)
T ss_pred HHHHHHHHHHHHHHHHhcCCc---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 443333344555666422211 12256679999999999999999999999999999999999999999999999999
Q ss_pred hcCHHHHHHH
Q psy5190 260 SGNEPGLQAT 269 (292)
Q Consensus 260 sgn~~~Le~t 269 (292)
..-.+.+..+
T Consensus 189 ~kale~~~~~ 198 (211)
T cd07598 189 AKALEVYTAA 198 (211)
T ss_pred HHHHHHHHHH
Confidence 8776655544
No 61
>cd07631 BAR_APPL1 The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains. Vertebrates contain two APPL proteins, APPL1 and APPL2. APPL1 interacts with diverse receptors (e.g. NGF receptor TrkA, FSHR, adiponectin receptors) and signaling proteins (e.g. Akt, PI3K), and may function as an adaptor linked to many distinct signaling pathways. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be invo
Probab=97.32 E-value=0.037 Score=51.25 Aligned_cols=158 Identities=13% Similarity=0.138 Sum_probs=123.2
Q ss_pred HHHHHHHHHHHHHHH-------HhhcChhhHHHHhhchhhhhhhhHhhHHHHHhHH-HHHHhHHHhhhhhhhhHHHHHHH
Q psy5190 105 VIFFLQQTLGEAFAD-------LAQKSPELQEEFLCNSETQRNLTGTGEILLNALN-LFVSSVNTLCNKTIEDTLVTVRQ 176 (292)
Q Consensus 105 ~l~qtq~~lgd~F~~-------Ls~kEpeL~~eF~~naetqr~m~k~G~~Ll~aL~-~f~sdl~Tf~~KAI~DTllTIkk 176 (292)
+|...++.|+..+.+ ++..+..+...+..|+.+-+-|+.....|+..+. -++.-|..|+..-|...+.+=|+
T Consensus 34 ~ls~a~~~~~~~l~~~~~~~f~~~~dDe~i~~~L~kFs~~L~El~~~~~~L~~q~~~sl~~pL~~F~kedL~~~Ke~KK~ 113 (215)
T cd07631 34 ELSAATHLTSKLLKEYEKQRFPLGGDDEVMSSTLQQFSKVIDELSSCHAVLSTQLADAMMFPITQFKERDLKEILTLKEV 113 (215)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555544332 2334444777888888888888887777776664 46778899999999999999999
Q ss_pred HHHhhHhHHHHHhhHHHhhccccCcccccchH-HHHHHHHHHHHHHHHhHHhHHHHHHhhhcccchhHHHHHHHHHHHHH
Q psy5190 177 YENARVEYDAYRTDLELLLQVTSNVDSNCSHL-DEAQRNFQTHRENFEKLRNDVVVKLRFLDENRIKVMHKQLLLFHNAI 255 (292)
Q Consensus 177 YE~AR~EYdAyrl~leem~~e~~~~~~~l~r~-etaqr~~q~aK~rFdKLR~DV~vKLdLLdenRvkvm~~QL~~~~nAl 255 (292)
|+.+.=+|++++.+.-.++..- +-+.+ +.+-..+..+|.+|...+.|.+-+|.-|.+.|-=.|..-|..|..|.
T Consensus 114 FdK~Se~~d~Al~K~a~lsk~K-----~~E~~~eea~~~v~~tR~~F~~~aLdYv~qLn~lQ~rKKfefLe~lLs~m~A~ 188 (215)
T cd07631 114 FQIASNDHDAAINRYSRLSKRR-----ENEKVKYEVTEDVYTSRKKQHQTMMHYFCALNTLQYKKKIALLEPLLGYMQAQ 188 (215)
T ss_pred HHHhhhHHHHHHHHHhcCCCCC-----CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999988766554322 22444 34667788899999999999999999999999999999999999999
Q ss_pred HHHHhcCHHHHH
Q psy5190 256 SAYFSGNEPGLQ 267 (292)
Q Consensus 256 ~ay~sgn~~~Le 267 (292)
..||-.-++.|.
T Consensus 189 ~tFFhqG~e~L~ 200 (215)
T cd07631 189 ISFFKMGSENLN 200 (215)
T ss_pred HHHHHhhHHHHH
Confidence 999988888444
No 62
>PF08397 IMD: IRSp53/MIM homology domain; InterPro: IPR013606 The IMD (IRSp53 and MIM (missing in metastases) homology) domain is a BAR-like domain of approximately 250 amino acids found at the N-terminal in the insulin receptor tyrosine kinase substrate p53 (IRSp53) and in the evolutionarily related IRSp53/MIM family. In IRSp53, a ubiquitous regulator o the actin cytoskeleton, the IMD domain acts as conserved F-actin bundling domain involved in filopodium formation. Filopodium-inducing IMD activity is regulated by Cdc42 and Rac1 (Rho-family GTPases) and is SH3-independent [, , ]. The IRSp53/MIM family is a novel F-actin bundling protein family that includes invertebrate relatives: Vertebrate MIM (missing in metastasis), an actin-binding scaffold protein that may be involved in cancer metastasis. Vertebrate ABBA-1, a MIM-related protein. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2 (BAI1-associated protein 2) or insulin receptor tyrosine kinase substrate p53 (IRSp53), a multifunctional adaptor protein that links Rac1 with a Wiskott-Aldrich syndrome family verprolin-homologous protein 2 (WAVE2) to induce lamellipodia or Cdc42 with Mena to induce filopodia []. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2-like proteins 1 and 2 (BAI1-associated protein 2-like proteins 1 and 2). Drosophila melanogaster (Fruit fly) CG32082-PA. Caenorhabditis elegans M04F3.5 protein. The vertebrate IRSp53/MIM family is divided into two major groups: the IRSp53 subfamily and the MIM/ABBA subfamily. The putative invertebrate homologues are positioned between them. The IRSp53 subfamily members contain an SH3 domain, and the MIM/ABBA subfamily proteins contain a WH2 (WASP-homology 2) domain. The vertebrate SH3-containing subfamily is further divided into three groups according to the presence or absence of the WWB and the half-CRIB motif. The IMD domain can bind to and bundle actin filaments, bind to membranes and interact with the small GTPase Rac [, ]. The IMD domain folds as a coiled coil of three extended alpha-helices and a shorter C-terminal helix. Helix 4 packs tightly against the other three helices, and thus represents an integral part of the domain. The fold of the IMD domain closely resembles that of the BAR (Bin-Amphiphysin-RVS) domain, a functional module serving both as a sensor and inducer of membrane curvature []. The WH2 domain performs a scaffolding function [].; GO: 0008093 cytoskeletal adaptor activity, 0017124 SH3 domain binding, 0007165 signal transduction, 0046847 filopodium assembly; PDB: 2D1L_A 3OK8_B 1WDZ_B 1Y2O_A 2YKT_A.
Probab=97.25 E-value=0.056 Score=48.99 Aligned_cols=168 Identities=15% Similarity=0.189 Sum_probs=120.2
Q ss_pred HHHHHHHHHHHHHHHHhhc------ChhhHHHHhhchhhhhhhhHhhHHHHHhHHH-HHHhHHHhhhhhhhhHHHHHHHH
Q psy5190 105 VIFFLQQTLGEAFADLAQK------SPELQEEFLCNSETQRNLTGTGEILLNALNL-FVSSVNTLCNKTIEDTLVTVRQY 177 (292)
Q Consensus 105 ~l~qtq~~lgd~F~~Ls~k------EpeL~~eF~~naetqr~m~k~G~~Ll~aL~~-f~sdl~Tf~~KAI~DTllTIkkY 177 (292)
.++++..+|.|+|..||.. +.+++..+...++.||.++.+-..+..++.- |+.-|...+..-+...-..-+.|
T Consensus 28 ~~~~a~~~f~dal~ki~~~A~~s~~s~~lG~~L~~~s~~~r~i~~~~~~~~~~~~~~li~pLe~~~e~d~k~i~~~~K~y 107 (219)
T PF08397_consen 28 AMSQAAAAFFDALQKIGDMASNSRGSKELGDALMQISEVHRRIENELEEVFKAFHSELIQPLEKKLEEDKKYITQLEKDY 107 (219)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 6888889999999999842 3359999999999999999888777665432 33333333333333333344445
Q ss_pred HHhhHhHHHHHhhHHHhhccc-------cC-cccccchHHHHHHHHHHHHHHHHhHHhHHHHHHhhhcccchhHHHHHHH
Q psy5190 178 ENARVEYDAYRTDLELLLQVT-------SN-VDSNCSHLDEAQRNFQTHRENFEKLRNDVVVKLRFLDENRIKVMHKQLL 249 (292)
Q Consensus 178 E~AR~EYdAyrl~leem~~e~-------~~-~~~~l~r~etaqr~~q~aK~rFdKLR~DV~vKLdLLdenRvkvm~~QL~ 249 (292)
+ -||+..+..++....+. +. -....+.+..+...+..-...++....+.+...-+=+..|.-.+...+.
T Consensus 108 ~---ke~k~~~~~l~K~~se~~Kl~KK~~kgk~~~~~~~~~~~~~v~~~~~ele~~~~~~~r~al~EERrRyc~lv~~~~ 184 (219)
T PF08397_consen 108 E---KEYKRKRDELKKAESELKKLRKKSRKGKDDQKYELKEALQDVTERQSELEEFEKQSLREALLEERRRYCFLVEKHC 184 (219)
T ss_dssp H---HHHHHHHHHHHHHHHHHHHHHCCCCCCTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred H---HHHHHHHHHHHHHHHHHHHHhhcccCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 47888877776543221 21 1122355666777888888899999888887777777788888999999
Q ss_pred HHHHHHHHHHhcCHHHHHHHhhhccc
Q psy5190 250 LFHNAISAYFSGNEPGLQATLKQFNI 275 (292)
Q Consensus 250 ~~~nAl~ay~sgn~~~Le~tl~~F~i 275 (292)
.|.+...+|+..+...|.+.+.....
T Consensus 185 ~~~~~~~~~~~~~~~~L~~~~~~w~~ 210 (219)
T PF08397_consen 185 SVVKSELAFHNEAVEHLQEKLDDWQE 210 (219)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 99999999999999999988776443
No 63
>cd07673 F-BAR_FCHO2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 2 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. The specific function of FCH domain Only 2 (FCHO2) is still unknown. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO1 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=97.24 E-value=0.037 Score=51.98 Aligned_cols=169 Identities=10% Similarity=0.191 Sum_probs=112.6
Q ss_pred HHHHHHHHHHHHHHHHhhcC---hh---hHHHHhhchhhhhhhhHhhHHHHHhHHHHHHhHHHhhhhhhh----------
Q psy5190 105 VIFFLQQTLGEAFADLAQKS---PE---LQEEFLCNSETQRNLTGTGEILLNALNLFVSSVNTLCNKTIE---------- 168 (292)
Q Consensus 105 ~l~qtq~~lgd~F~~Ls~kE---pe---L~~eF~~naetqr~m~k~G~~Ll~aL~~f~sdl~Tf~~KAI~---------- 168 (292)
+-+.+.+.|+..+..|+.+- ++ +...+...-.....|+.....|...|.-++.+|..|......
T Consensus 37 eRa~iEe~Yak~L~kLak~~~~~~~~Gt~~~~~~~~~~e~e~~a~~H~~la~~L~~~~~~l~~~~~~~~k~rK~~ke~~~ 116 (269)
T cd07673 37 ERATIEEAYSRSMTKLAKSASNYSQLGTFAPVWDVFKTSTEKLANCHLELVRKLQELIKEVQKYGEEQVKSHKKTKEEVA 116 (269)
T ss_pred HHHHHHHHHHHHHHHHHhhhccCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh
Confidence 55666777888888888742 22 333344444445667777788888888888888888743332
Q ss_pred hH-------HHHHHHHHHhhHhHHHHHhhHHHhhccccCcccccchHHHHHHH--------------HHHHHHHHHhHHh
Q psy5190 169 DT-------LVTVRQYENARVEYDAYRTDLELLLQVTSNVDSNCSHLDEAQRN--------------FQTHRENFEKLRN 227 (292)
Q Consensus 169 DT-------llTIkkYE~AR~EYdAyrl~leem~~e~~~~~~~l~r~etaqr~--------------~q~aK~rFdKLR~ 227 (292)
++ ..+.+..+.||=-|...|.+.+.+..... .-.++++++.. +...+.+|..-=.
T Consensus 117 ~~~~~~~~~~~~~~~~~KaK~~Y~~~c~e~e~~~~~~~----t~k~leK~~~k~~ka~~~Y~~~v~~l~~~~~~~~~~m~ 192 (269)
T cd07673 117 GTLEAVQNIQSITQALQKSKENYNAKCLEQERLKKEGA----TQREIEKAAVKSKKATESYKLYVEKYALAKADFEQKMT 192 (269)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 22345678899999999999888764322 12334444333 3333445555556
Q ss_pred HHHHHHhhhcccchhHHHHHHHHHHHHHHHHHhc---CHHHHHHHhhhccccc
Q psy5190 228 DVVVKLRFLDENRIKVMHKQLLLFHNAISAYFSG---NEPGLQATLKQFNIKT 277 (292)
Q Consensus 228 DV~vKLdLLdenRvkvm~~QL~~~~nAl~ay~sg---n~~~Le~tl~~F~i~~ 277 (292)
.++.+++-+++.|+..|...|+.|.+.++.-+.. +.+-+..++....++=
T Consensus 193 ~~~~~~Q~~Ee~Ri~~~k~~l~~y~~~~s~~~~~~~~~~e~ir~~le~~d~~~ 245 (269)
T cd07673 193 ETAQKFQDIEETHLIRIKEIIGSYSNSVKEIHIQIGQVHEEFINNMANTTVES 245 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHhCCHHH
Confidence 6899999999999999999999999998887543 6666666666666553
No 64
>cd07672 F-BAR_PSTPIP2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 2. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 2 (PSTPIP2), also known as Macrophage Actin-associated tYrosine Phosphorylated protein (MAYP), is mostly expressed in hematopoietic cells but is also expressed in the brain. It is involved in regulating cell adhesion and motility. Mutations in the gene encoding murine PSTPIP2 can cause autoinflammatory disorders such as chronic multifocal osteomyelitis and macrophage autoinflammatory disease. PSTPIP2 contains an N-terminal F-BAR domain and lacks the PEST motifs and SH3 domain that are found in PSTPIP1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They ca
Probab=97.15 E-value=0.074 Score=49.41 Aligned_cols=165 Identities=10% Similarity=0.106 Sum_probs=103.4
Q ss_pred HHHHHHHHHHHHHHHHhhc----Chh---hHHHHhhc-------hhhhhhhhHhhHHHHHhHHHHHHhHHH-------hh
Q psy5190 105 VIFFLQQTLGEAFADLAQK----SPE---LQEEFLCN-------SETQRNLTGTGEILLNALNLFVSSVNT-------LC 163 (292)
Q Consensus 105 ~l~qtq~~lgd~F~~Ls~k----Epe---L~~eF~~n-------aetqr~m~k~G~~Ll~aL~~f~sdl~T-------f~ 163 (292)
+-+.+.+.|+..+..|+.+ .++ |...|..+ |+.|-.+..+-..++.+|..|.....- -.
T Consensus 30 ERA~IE~~YaK~L~kLskk~~~g~~E~GTl~~sw~~~~~E~e~~a~~H~~la~~L~~~~~~~~~f~~~qk~~rKk~e~~~ 109 (240)
T cd07672 30 ERASIEEKYGKELLNLSKKKPCGQTEINTLKRSLDVFKQQIDNVGQSHIQLAQTLRDEAKKMEDFRERQKLARKKIELIM 109 (240)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667778888888888875 223 33344333 344444444444444455555332222 12
Q ss_pred hhhhhhHHHHHHHHHHhhHhHHHHHhhHHHhhccccC-----ccccc----chHHHHHHHHHHHHHHHHhH---------
Q psy5190 164 NKTIEDTLVTVRQYENARVEYDAYRTDLELLLQVTSN-----VDSNC----SHLDEAQRNFQTHRENFEKL--------- 225 (292)
Q Consensus 164 ~KAI~DTllTIkkYE~AR~EYdAyrl~leem~~e~~~-----~~~~l----~r~etaqr~~q~aK~rFdKL--------- 225 (292)
.|+.-.=..-.++.+.+|-.|...|.+.+.+...... ....+ .|++.++..++.++..|.+-
T Consensus 110 ek~~K~~~~~~k~~~ksKk~Ye~~Cke~~~a~~~~~~~~~~~~~ke~~K~~~Kl~K~~~~~~k~~~~Y~~~v~~l~~~~~ 189 (240)
T cd07672 110 DAIHKQRAMQFKKTMESKKNYEQKCRDKDEAEQAVNRNANLVNVKQQEKLFAKLAQSKQNAEDADRLYMQNISVLDKIRE 189 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222233344567889999999999998776653211 11123 34555555555555544332
Q ss_pred -----HhHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHhcCHHHHHHH
Q psy5190 226 -----RNDVVVKLRFLDENRIKVMHKQLLLFHNAISAYFSGNEPGLQAT 269 (292)
Q Consensus 226 -----R~DV~vKLdLLdenRvkvm~~QL~~~~nAl~ay~sgn~~~Le~t 269 (292)
=.+.|++++-|++.|++.|...|+.|-|.++.-.-.+.+..+.+
T Consensus 190 ~w~~~~~~~c~~fq~lEeeRi~f~k~~lw~~~n~~s~~Cv~~D~~~e~~ 238 (240)
T cd07672 190 DWQKEHVKACEFFEKQECERINFFRNAVWTHVNQLSQQCVTSDEMYEEV 238 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHcCcHHHHHHH
Confidence 22469999999999999999999999999999888877777654
No 65
>PF10455 BAR_2: Bin/amphiphysin/Rvs domain for vesicular trafficking; InterPro: IPR018859 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. This entry identifies several fungal BAR domain proteins, such as Gvp36, that are not found by IPR004148 from INTERPRO [].
Probab=97.14 E-value=0.047 Score=52.43 Aligned_cols=159 Identities=16% Similarity=0.176 Sum_probs=118.0
Q ss_pred HHHHHHHHHHHHHHHHhh-c--ChhhHHHHhhchhhhhhhhHhhHHHHHhHH-HHHHhHHHhhhhhhhhHHHHHHHHHHh
Q psy5190 105 VIFFLQQTLGEAFADLAQ-K--SPELQEEFLCNSETQRNLTGTGEILLNALN-LFVSSVNTLCNKTIEDTLVTVRQYENA 180 (292)
Q Consensus 105 ~l~qtq~~lgd~F~~Ls~-k--EpeL~~eF~~naetqr~m~k~G~~Ll~aL~-~f~sdl~Tf~~KAI~DTllTIkkYE~A 180 (292)
.|.++-..=+..|.++.. . +..|+..|..++.++.-+..-++..-..+. .|..-+.+.+|.-|.....-=|+.+++
T Consensus 125 ALSraa~~ss~~l~~l~~~~~~~~~L~~aL~~~S~~~~~I~~aRL~qD~~I~~~Fn~~l~~~Ln~~~~~a~k~RkkV~~s 204 (289)
T PF10455_consen 125 ALSRAALTSSEILEELKSSDEDEDPLSKALLKYSSAYEKIAQARLEQDQLIQKEFNKKLQTTLNTDFKKANKARKKVENS 204 (289)
T ss_pred HHHHHHHHhHHHHHhcccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555556777721 1 123999999999998888877776665554 588888888888888888888999999
Q ss_pred hHhHHHHHhhHHHhhccccCcccccchHHHHHHHHHHHHHHHHhHHhHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHh
Q psy5190 181 RVEYDAYRTDLELLLQVTSNVDSNCSHLDEAQRNFQTHRENFEKLRNDVVVKLRFLDENRIKVMHKQLLLFHNAISAYFS 260 (292)
Q Consensus 181 R~EYdAyrl~leem~~e~~~~~~~l~r~etaqr~~q~aK~rFdKLR~DV~vKLdLLdenRvkvm~~QL~~~~nAl~ay~s 260 (292)
|++||+.|..++.....+ +-+.....+..+...|..--.+.+.-|+-+=++.= .-.-|..|++|=..||.
T Consensus 205 RL~~D~~R~~~k~~~~pe--------kee~~r~~lE~aEDeFv~aTeeAv~~Mk~vl~~~e--~l~~Lk~lv~AQl~Yhk 274 (289)
T PF10455_consen 205 RLQFDAARANLKNKAKPE--------KEEQLRVELEQAEDEFVSATEEAVEVMKEVLDNSE--PLRLLKELVKAQLEYHK 274 (289)
T ss_pred HHHHHHHHHHhcccCCcc--------cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc--hHHHHHHHHHHHHHHHH
Confidence 999999999988742222 22345556777777888888887777765444431 23778899999999999
Q ss_pred cCHHHHHHHhhhc
Q psy5190 261 GNEPGLQATLKQF 273 (292)
Q Consensus 261 gn~~~Le~tl~~F 273 (292)
.|++.|+..++.+
T Consensus 275 ~aae~L~~~~~~l 287 (289)
T PF10455_consen 275 KAAEALSELLKSL 287 (289)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999987764
No 66
>cd07655 F-BAR_PACSIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. They bind both dynamin and Wiskott-Aldrich syndrome protein (WASP), and may provide direct links between the actin cytoskeletal machinery through WASP and dynamin-dependent endocytosis. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce
Probab=97.10 E-value=0.036 Score=51.54 Aligned_cols=180 Identities=16% Similarity=0.247 Sum_probs=107.1
Q ss_pred cccchhHHHHHHHHHHhCCCCccCchhhhHHHHHHHHHHHHHHHHHHHHhhc-------Chh---hHHHHhhc-------
Q psy5190 72 WGISTYKCTRQIMYEKLGKSTRTVDSDLKSRVLVIFFLQQTLGEAFADLAQK-------SPE---LQEEFLCN------- 134 (292)
Q Consensus 72 W~~~tyk~TKQ~l~EklGk~~~TvD~ELeakIl~l~qtq~~lgd~F~~Ls~k-------Epe---L~~eF~~n------- 134 (292)
|++..|+.|.+ ++..|-+++ .||..=+=+-+.+.+.|+..+..|+.+ .|+ |...|...
T Consensus 2 W~~~~y~~~~k----r~~~G~~~~-~el~~f~kERa~IE~~Yak~L~kLakk~~~~~~~~~e~gsl~~aw~~~~~e~e~~ 76 (258)
T cd07655 2 WEVGNYKRTVK----RIEDGHKLC-DDLMKMVQERAEIEKAYAKKLKEWAKKWRDLIEKGPEYGTLETAWKGLLSEAERL 76 (258)
T ss_pred CCCCCchhhHH----HHhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHHHH
Confidence 99999998854 444455555 233322226677788888888888864 443 33333333
Q ss_pred hhhhhhhhHhhH-HHHHhHHHHHHh---------------HHHhhhhhhhhHHHHHHHHHHhhHhHHHHHhhHHHhhccc
Q psy5190 135 SETQRNLTGTGE-ILLNALNLFVSS---------------VNTLCNKTIEDTLVTVRQYENARVEYDAYRTDLELLLQVT 198 (292)
Q Consensus 135 aetqr~m~k~G~-~Ll~aL~~f~sd---------------l~Tf~~KAI~DTllTIkkYE~AR~EYdAyrl~leem~~e~ 198 (292)
|..|..++.+=. .+..+|..+..+ +++=..++--.-...++..+.||--|...|..++......
T Consensus 77 a~~H~~l~~~L~~~v~~~i~~~~~e~~~k~~~~~~ke~K~~e~~~~kaqk~~~~~~~~l~kaKk~Y~~~cke~e~a~~~~ 156 (258)
T cd07655 77 SELHLSIRDKLLNDVVEEVKTWQKENYHKSMMGGFKETKEAEDGFAKAQKPWAKLLKKVEKAKKAYHAACKAEKSAQKQE 156 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444443322 233455555443 1111122222223456778999999999999998865443
Q ss_pred cCcc-------cccchH----HHHHHHHHHHH--------------HHHHhHHhHHHHHHhhhcccchhHHHHHHHHHHH
Q psy5190 199 SNVD-------SNCSHL----DEAQRNFQTHR--------------ENFEKLRNDVVVKLRFLDENRIKVMHKQLLLFHN 253 (292)
Q Consensus 199 ~~~~-------~~l~r~----etaqr~~q~aK--------------~rFdKLR~DV~vKLdLLdenRvkvm~~QL~~~~n 253 (292)
.... ..+.|+ +.+...+..++ .+|..-=..|+.+++-|++.|+..|...|..|++
T Consensus 157 ~~~~~d~~~~~~eleK~~~k~~k~~~~~~~~~~~Y~~~l~~~n~~~~~y~~~m~~~~~~~Q~lEe~Ri~~lk~~l~~y~~ 236 (258)
T cd07655 157 NNAKSDTSLSPDQVKKLQDKVEKCKQEVSKTKDKYEKALEDLNKYNPRYMEDMEQVFDKCQEFEEKRLDFFKEILLSYHR 236 (258)
T ss_pred HhcccCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2111 122232 22322333333 3455555678999999999999999999999999
Q ss_pred HHH
Q psy5190 254 AIS 256 (292)
Q Consensus 254 Al~ 256 (292)
.+.
T Consensus 237 ~l~ 239 (258)
T cd07655 237 HLD 239 (258)
T ss_pred Hhc
Confidence 875
No 67
>cd07640 BAR_ASAP3 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ASAP3 (ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 3) is also known as ACAP4 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 4), DDEFL1 (Development and Differentiation Enhancing Factor-Like 1), or centaurin beta-6. It is an Arf6-specific GTPase activating protein (GAP) and is co-localized with Arf6 in ruffling membranes upon EGF stimulation. ASAP3 is implicated in the pathogenesis of hepatocellular carcinoma and plays a role in regulating cell migration and invasion. ASAP3 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, ankyrin (ANK) repeats, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membran
Probab=97.06 E-value=0.025 Score=52.09 Aligned_cols=161 Identities=22% Similarity=0.245 Sum_probs=127.3
Q ss_pred HHHHHHHHHHHHH-----HhhcChhhHHHHhhchhhhhhhhHhhHHHHHhHHHHHH-hHHHhhhhhhhhHH-HHHHHHHH
Q psy5190 107 FFLQQTLGEAFAD-----LAQKSPELQEEFLCNSETQRNLTGTGEILLNALNLFVS-SVNTLCNKTIEDTL-VTVRQYEN 179 (292)
Q Consensus 107 ~qtq~~lgd~F~~-----Ls~kEpeL~~eF~~naetqr~m~k~G~~Ll~aL~~f~s-dl~Tf~~KAI~DTl-lTIkkYE~ 179 (292)
+.-+..|.+++-. |++.+|+++..|..|+-.+|-+++--..|+-.|+-+++ -+.+|+-.-|-|.+ .+=|.++.
T Consensus 36 v~ne~~~~~~le~lg~~~l~~~~~~~~t~fl~~av~tkel~al~k~L~qn~nniv~fpldsflK~dlr~~K~D~KK~FeK 115 (213)
T cd07640 36 VENEEQYTEALENLGNSHLSQNNHELSTGFLNLAVFTREVTALFKNLVQNLNNIVSFPLDSLLKGQLRDGRLESKKQMEK 115 (213)
T ss_pred HhHHHHHHHHHHHHhhhhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccchHHHHHHHhhhhhHHHHhHHHH
Confidence 3334444444433 55678999999999999999888877777777776665 57888888898888 88899999
Q ss_pred hhHhHHHHHhhHHHhhccccCcccccchH--HHHHHHHHHHHHHHHhHHhHHHHHHhhhcccchhHHHHHHHHHHHHHHH
Q psy5190 180 ARVEYDAYRTDLELLLQVTSNVDSNCSHL--DEAQRNFQTHRENFEKLRNDVVVKLRFLDENRIKVMHKQLLLFHNAISA 257 (292)
Q Consensus 180 AR~EYdAyrl~leem~~e~~~~~~~l~r~--etaqr~~q~aK~rFdKLR~DV~vKLdLLdenRvkvm~~QL~~~~nAl~a 257 (292)
|.=+|++.+.+.+......+- ...+.|+ +++-......|..|.-.--|-+.|+..+..++--++-+.|..|-.|-..
T Consensus 116 ~skDyE~kl~K~ak~~r~k~~-~~g~~~~e~eEaae~l~~eRr~Fql~acdYllkin~iq~KK~~diLq~Llsy~hAQ~~ 194 (213)
T cd07640 116 AWKDYEAKIGKLEKERREKQK-QHGLIRLDMTDTAEDMQRERRNFQLHMCEYLLKAQESQMKQGPDFLQSLIKFFHAQHN 194 (213)
T ss_pred HHHHHHHHHHHHhccccccch-hcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhchHHHHHHHHHHHHHHH
Confidence 999999999997776543321 1244443 4556678888888888888999999999999999999999999999999
Q ss_pred HHhcCHHHHHH
Q psy5190 258 YFSGNEPGLQA 268 (292)
Q Consensus 258 y~sgn~~~Le~ 268 (292)
||-.-.++++.
T Consensus 195 fFqqG~~~l~~ 205 (213)
T cd07640 195 FFQDGWKAAQN 205 (213)
T ss_pred HHHHHHHHHHH
Confidence 99988888876
No 68
>cd07622 BAR_SNX4 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 4. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX4 is involved in recycling traffic from the sorting endosome (post-Golgi endosome) back to the late Golgi. It is also implicated in the regulation of plasma membrane receptor trafficking and interacts with receptors for EGF, insulin, platelet-derived growth factor and leptin. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and
Probab=97.01 E-value=0.1 Score=47.36 Aligned_cols=150 Identities=7% Similarity=0.152 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHHHHHHhhcChhhHHHHhhchhhhhhhhHhhHHHHHhHHHHHHhHHHhhhhhhhhHHH-HHHHHHHhhHh
Q psy5190 105 VIFFLQQTLGEAFADLAQKSPELQEEFLCNSETQRNLTGTGEILLNALNLFVSSVNTLCNKTIEDTLV-TVRQYENARVE 183 (292)
Q Consensus 105 ~l~qtq~~lgd~F~~Ls~kEpeL~~eF~~naetqr~m~k~G~~Ll~aL~~f~sdl~Tf~~KAI~DTll-TIkkYE~AR~E 183 (292)
.+...+..||.+|..+|.-||+|+..+..-|.+-..++..-..+......|...|.-|+. +.+++. .+++-+.-+.+
T Consensus 46 ~l~~~~~e~g~~f~~ls~~E~~l~~~le~~g~~~d~~~~~~~~~~~~~~~f~e~LkEy~~--ya~slk~vlk~r~~~q~~ 123 (201)
T cd07622 46 GVYKIHANYGRVFSEWSAIEKEMGDGLQKAGHYMDSYAASIDNGLEDEELIADQLKEYLF--FADSLRAVCKKHELLQYD 123 (201)
T ss_pred HHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 678888999999999999999999876655543322222111111111222222222221 111111 12222222333
Q ss_pred HHHHHhhHHHhhccccCcccccchHHHHHHHHHHHHHHHHhHHhHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHhcCH
Q psy5190 184 YDAYRTDLELLLQVTSNVDSNCSHLDEAQRNFQTHRENFEKLRNDVVVKLRFLDENRIKVMHKQLLLFHNAISAYFSGNE 263 (292)
Q Consensus 184 YdAyrl~leem~~e~~~~~~~l~r~etaqr~~q~aK~rFdKLR~DV~vKLdLLdenRvkvm~~QL~~~~nAl~ay~sgn~ 263 (292)
|...--.+. .+...+...+..++++++..-.+|+.=++-+...+..+|...|..|..+=..|+.++.
T Consensus 124 ~e~~~~~L~-------------~k~~~l~~~ve~a~~~~e~f~~~~~~E~~rF~~~K~~dlk~~l~~~A~~qi~~~~~~~ 190 (201)
T cd07622 124 LEKAEDALA-------------NKKQQGEEAVKEAKDELNEFVKKALEDVERFKKQKVRDLKEILISYAKLQIKLAKKGL 190 (201)
T ss_pred HHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333221111 1223378889999999999999999999999999999999999999999999999887
Q ss_pred HHHHHH
Q psy5190 264 PGLQAT 269 (292)
Q Consensus 264 ~~Le~t 269 (292)
++-+.+
T Consensus 191 ~~W~~~ 196 (201)
T cd07622 191 QTWTNI 196 (201)
T ss_pred HHHHHH
Confidence 776654
No 69
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=96.95 E-value=0.13 Score=47.21 Aligned_cols=165 Identities=13% Similarity=0.139 Sum_probs=105.3
Q ss_pred HHHHHHHHHHHHHHHHhhcCh------hhHHHHhhchhhhhhhhHhhHHHHHhHHHHHHhHHHhhh--------------
Q psy5190 105 VIFFLQQTLGEAFADLAQKSP------ELQEEFLCNSETQRNLTGTGEILLNALNLFVSSVNTLCN-------------- 164 (292)
Q Consensus 105 ~l~qtq~~lgd~F~~Ls~kEp------eL~~eF~~naetqr~m~k~G~~Ll~aL~~f~sdl~Tf~~-------------- 164 (292)
+-+.+.+.||..+..|+.+.. .+...|...-.....++.....|...|.-.+.++.+|..
T Consensus 30 eRa~iE~eYak~L~kLak~~~~~~e~gsl~~aw~~i~~e~e~~a~~H~~la~~L~~~v~~l~~~~~~~~~~~K~~~~~~~ 109 (239)
T cd07647 30 QRAKAEEDYGKALLKLSKSAGPGDEIGTLKSSWDSLRKETENVANAHIQLAQSLREEAEKLEEFREKQKEERKKTEDIMK 109 (239)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777788888888887432 144445444444445555555555555555555555543
Q ss_pred hhhhhHHHHHHHHHHhhHhHHHHHhhHHHhhccc----cC-cccccchHH----HHH--------------HHHHHHHHH
Q psy5190 165 KTIEDTLVTVRQYENARVEYDAYRTDLELLLQVT----SN-VDSNCSHLD----EAQ--------------RNFQTHREN 221 (292)
Q Consensus 165 KAI~DTllTIkkYE~AR~EYdAyrl~leem~~e~----~~-~~~~l~r~e----taq--------------r~~q~aK~r 221 (292)
++...-...++..+.||=.|...|..+|...+.. .+ ....++|++ .+. ......+.+
T Consensus 110 k~qk~~~~~~~~l~KaKk~Y~~~C~e~e~a~~~~~~~~~~~~~ke~eK~~~K~~k~~~~~~~a~~~Y~~~v~~l~~~~~~ 189 (239)
T cd07647 110 RSQKNKKELYKKTMKAKKSYEQKCREKDKAEQAYEKSSSGAQPKEAEKLKKKAAQCKTSAEEADSAYKSSIGCLEDARVE 189 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2333334566888999999999999998764221 11 111233332 222 123333344
Q ss_pred HHhHHhHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHhcCHHHHHHH
Q psy5190 222 FEKLRNDVVVKLRFLDENRIKVMHKQLLLFHNAISAYFSGNEPGLQAT 269 (292)
Q Consensus 222 FdKLR~DV~vKLdLLdenRvkvm~~QL~~~~nAl~ay~sgn~~~Le~t 269 (292)
|..==..++..+.-|++.|++.|...|+.|-|.++.-+-.+.+.-+.+
T Consensus 190 ~~~~~~~~~~~~Q~lEe~Ri~~lk~~l~~y~n~is~~cv~~d~~~e~~ 237 (239)
T cd07647 190 WESEHATACQVFQNMEEERIKFLRNALWVHCNLGSMQCVKLDEMYEDV 237 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHccchHHHHHh
Confidence 444444589999999999999999999999999999888887777654
No 70
>cd07626 BAR_SNX9_like The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 9 and Similar Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX9, SNX18, SNX33, and similar proteins. SNX9 is localized to plasma membrane endocytic sites and acts primarily in clathrin-mediated endocytosis, while SNX18 is localized to peripheral endosomal structures, and acts in a trafficking pathway that is clathrin-independent but relies on AP-1 and PACS1. BAR domains for
Probab=96.94 E-value=0.06 Score=49.06 Aligned_cols=147 Identities=10% Similarity=0.169 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHHhh--------cChhhHHHHhhchhhhhhh----hHhhHHHHHhHHHHHHhHHHhhhhhhhhHHHHHHH
Q psy5190 109 LQQTLGEAFADLAQ--------KSPELQEEFLCNSETQRNL----TGTGEILLNALNLFVSSVNTLCNKTIEDTLVTVRQ 176 (292)
Q Consensus 109 tq~~lgd~F~~Ls~--------kEpeL~~eF~~naetqr~m----~k~G~~Ll~aL~~f~sdl~Tf~~KAI~DTllTIkk 176 (292)
-++.+|.+|..||+ .+..|..++..-|++-..+ ..+-..=.-+|.-.+.+---++. ++||+..+
T Consensus 41 eyqk~G~af~~L~~af~~d~~~~~t~Ls~Al~~~g~~~e~Ig~l~~eQa~~D~~~l~E~L~eY~gll~-~~pdi~~~--- 116 (199)
T cd07626 41 EYQKIGQAFTSLGTAFELDETPTSVPLTQAIKHTGQAYEEIGELFAEQPKHDLIPLLDGLHEYKGLLS-TFPDIIGV--- 116 (199)
T ss_pred HHHHHHHHHHHHHHHHccCCCccchHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHhHHH-hhhHHHHH---
Confidence 34678999999983 1223888888888765333 33444444444444444444444 77777743
Q ss_pred HHHhhHhHHHHHhhHHHhhccccCcccccchHHHHHHHHHHHHHHHHhHHhHHHHHHhhhcccchhHHHHHHHHHHHHHH
Q psy5190 177 YENARVEYDAYRTDLELLLQVTSNVDSNCSHLDEAQRNFQTHRENFEKLRNDVVVKLRFLDENRIKVMHKQLLLFHNAIS 256 (292)
Q Consensus 177 YE~AR~EYdAyrl~leem~~e~~~~~~~l~r~etaqr~~q~aK~rFdKLR~DV~vKLdLLdenRvkvm~~QL~~~~nAl~ 256 (292)
..+.+.+++|...-... .|+ .+....+.+.+||.+=..+..=|.-++..||+++...+..|.....
T Consensus 117 -------~k~al~K~kE~~r~~~e-----gk~--~~~e~~ev~~r~d~IS~~~~aE~~~F~~eRv~Dfk~~m~~yLe~qI 182 (199)
T cd07626 117 -------HKGAVQKVKECERLVDE-----GKM--SSAELEEVKRRTDVISYALLAEINHFHRERVRDFKSMMRNYLQQQI 182 (199)
T ss_pred -------HHHHHHHHHHHHHHHHh-----ccc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556554311110 121 3345666888999999999999999999999999999999999999
Q ss_pred HHHhcCHHHHHHHhhhc
Q psy5190 257 AYFSGNEPGLQATLKQF 273 (292)
Q Consensus 257 ay~sgn~~~Le~tl~~F 273 (292)
+||..-...|++++..|
T Consensus 183 ~fyqqI~~kl~~a~~~~ 199 (199)
T cd07626 183 EFYQKIAAKLEEALAMY 199 (199)
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 99999999999998765
No 71
>cd07625 BAR_Vps17p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps17p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp17p forms a dimer with Vps5p, the yeast counterpart of human SNX1, and is part of the retromer complex that mediates the transport of the carboxypeptidase Y receptor Vps10p from endosomes to Golgi. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=96.92 E-value=0.084 Score=49.13 Aligned_cols=163 Identities=9% Similarity=0.102 Sum_probs=121.6
Q ss_pred HHHHHHHHHHHHHHHHhhcCh--hhHHHHhhchhhhh----hhhHhh----HHHHHhHHHHHHhHHHhhhhhhhhHHHHH
Q psy5190 105 VIFFLQQTLGEAFADLAQKSP--ELQEEFLCNSETQR----NLTGTG----EILLNALNLFVSSVNTLCNKTIEDTLVTV 174 (292)
Q Consensus 105 ~l~qtq~~lgd~F~~Ls~kEp--eL~~eF~~naetqr----~m~k~G----~~Ll~aL~~f~sdl~Tf~~KAI~DTllTI 174 (292)
++......||..|..||.-|. .|+.+|...|++-- ....++ -+|-.+|..++.++...-. |+.+=-.-.
T Consensus 50 ~La~~~~dfg~~l~~Ls~~E~~~~L~~a~~kLg~v~~~v~dl~~~QA~~d~~tl~d~L~~~~~~~~~vKe-altnR~~~~ 128 (230)
T cd07625 50 QLSLEEADFGQKLIQLSVEETHHGLGNLYEKFGKVLTAVGDIDSIQATVDMATLYDGLEWISRDAYVVKE-ALTNRHLLM 128 (230)
T ss_pred HHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 456666789999999999884 59999999986532 222333 3666778888777765554 666666778
Q ss_pred HHHHHhhHhHHHHHhhHHHhhcccc--C--cccccchHHHHHHHHHHHHHHHHhHHhHHHHHHhhhcccchhHHHHHHHH
Q psy5190 175 RQYENARVEYDAYRTDLELLLQVTS--N--VDSNCSHLDEAQRNFQTHRENFEKLRNDVVVKLRFLDENRIKVMHKQLLL 250 (292)
Q Consensus 175 kkYE~AR~EYdAyrl~leem~~e~~--~--~~~~l~r~etaqr~~q~aK~rFdKLR~DV~vKLdLLdenRvkvm~~QL~~ 250 (292)
+.|.+|.-...+-+.....+...+. + ......-++.+++..+....+|+++...+..=++=+...+.++|...|..
T Consensus 129 re~~qAq~~~~~K~~~~~rlk~s~~i~~~KvdeA~~~l~eA~~~e~~l~~k~~rIs~nm~~E~~rf~~~~~~dl~~~l~e 208 (230)
T cd07625 129 RELIQAQQNTKSKQEAARRLKAKRDINPLKVDEAIRQLEEATKHEHDLSLKLKRITGNMLIERKEWTDWTEEDLQSAIRE 208 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999988888877765432 1 00122234445666677788999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCHHHHHH
Q psy5190 251 FHNAISAYFSGNEPGLQA 268 (292)
Q Consensus 251 ~~nAl~ay~sgn~~~Le~ 268 (292)
|.-....|.......+|.
T Consensus 209 y~~~~ie~erk~l~~lE~ 226 (230)
T cd07625 209 YTLRKIEYERKKLSLLER 226 (230)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 999999998777666655
No 72
>cd07649 F-BAR_GAS7 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Growth Arrest Specific protein 7. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Growth Arrest Specific protein 7 (GAS7) is mainly expressed in the brain and is required for neurite outgrowth. It may also play a role in the protection and migration of embryonic stem cells. Treatment-related acute myeloid leukemia (AML) has been reported resulting from mixed-lineage leukemia (MLL)-GAS7 translocations as a complication of primary cancer treatment. GAS7 contains an N-terminal SH3 domain, followed by a WW domain, and a central F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=96.79 E-value=0.044 Score=50.69 Aligned_cols=175 Identities=14% Similarity=0.136 Sum_probs=104.4
Q ss_pred HHHHHhCCCCccCchhhhHHHHHHHHHHHHHHHHHHHHhhc---Chh---hHHHHhhc-------hhhhhhhhHhhHHH-
Q psy5190 83 IMYEKLGKSTRTVDSDLKSRVLVIFFLQQTLGEAFADLAQK---SPE---LQEEFLCN-------SETQRNLTGTGEIL- 148 (292)
Q Consensus 83 ~l~EklGk~~~TvD~ELeakIl~l~qtq~~lgd~F~~Ls~k---Epe---L~~eF~~n-------aetqr~m~k~G~~L- 148 (292)
.|.++++.|.+++ .||..-+=+-+.+.+.|+..+..||.. .|+ |...+..+ |+.|..+..+=...
T Consensus 9 vl~~~~k~g~~~~-~el~~fl~ERa~IEe~Yak~L~klak~~~~~~e~Gtl~~sw~~~~~e~E~~a~~H~~la~~L~~ev 87 (233)
T cd07649 9 ILLQKQLKGKQMQ-KEMAEFIRERIKIEEEYAKNLSKLSQSSLAAQEEGTLGEAWAQVKKSLADEAEVHLKFSSKLQSEV 87 (233)
T ss_pred HHHHHHHhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666666666 344433325567777888888888753 222 22222222 33344444333322
Q ss_pred HHhHHHHHHhHHH-------hhhhhhhhHHHHHHHHHHhhHhHHHHHhhHHHhhcccc---Ccc------cccchHHHHH
Q psy5190 149 LNALNLFVSSVNT-------LCNKTIEDTLVTVRQYENARVEYDAYRTDLELLLQVTS---NVD------SNCSHLDEAQ 212 (292)
Q Consensus 149 l~aL~~f~sdl~T-------f~~KAI~DTllTIkkYE~AR~EYdAyrl~leem~~e~~---~~~------~~l~r~etaq 212 (292)
..+|.-|..+..- =+.++--+-..+.++.+.||=.|...|.+.+....+.. +.. ..-.|++++.
T Consensus 88 ~~~l~~f~~~~~k~~k~~e~~~~k~~K~~~~~~~~~~kaKk~y~~~cke~e~~~~~~~~~k~~~s~~~~~K~~~K~~Ka~ 167 (233)
T cd07649 88 EKPLLNFRENFKKDMKKLDHHIADLRKQLASRYAAVEKARKALLERQKDLEGKTQQLEIKLSNKTEEDIKKARRKSTQAG 167 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHH
Confidence 3566666555222 22223333334455668899999999988876322111 000 1113455667
Q ss_pred HHHHHHHHHHHhHHhH-------HHHHHhhhcccchhHHHHHHHHHHHHHHHH
Q psy5190 213 RNFQTHRENFEKLRND-------VVVKLRFLDENRIKVMHKQLLLFHNAISAY 258 (292)
Q Consensus 213 r~~q~aK~rFdKLR~D-------V~vKLdLLdenRvkvm~~QL~~~~nAl~ay 258 (292)
..++.+.++|++.|.| |+.+++-+|+.|++.|...|..|++-+..-
T Consensus 168 ~e~~~~ve~y~~~r~~we~~m~~~~~~~Q~~Ee~Rl~~lk~~L~~y~~~~~~~ 220 (233)
T cd07649 168 DDLMRCVDLYNQAQSKWFEEMVTTSLELERLEVERIEMIRQHLCQYTQLRHET 220 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 7777788878777764 789999999999999999999999887653
No 73
>KOG1118|consensus
Probab=96.78 E-value=0.074 Score=51.95 Aligned_cols=187 Identities=18% Similarity=0.227 Sum_probs=133.0
Q ss_pred chhHHHHHHHHHHhCCCCcc-C-c--hhhhHHH----------H--------------------H-HH------------
Q psy5190 75 STYKCTRQIMYEKLGKSTRT-V-D--SDLKSRV----------L--------------------V-IF------------ 107 (292)
Q Consensus 75 ~tyk~TKQ~l~EklGk~~~T-v-D--~ELeakI----------l--------------------~-l~------------ 107 (292)
++|-..-|-++||+|..++| . | .|+|.+| + . +.
T Consensus 3 kqF~ka~Q~~sEK~ggae~TkLdDdF~eme~~vdvt~~~v~~i~~~tteylqpnpa~rakl~~~n~lsKvrG~~k~~~yp 82 (366)
T KOG1118|consen 3 KQFNKASQWTSEKVGGAEGTKLDDDFLEMEKEVDVTSKGVTKILAKTTEYLQPNPASRAKLAMLNTLSKVRGQVKEKGYP 82 (366)
T ss_pred hHHHHHHHHhccccccccCCcCChHHHHHHHhHHHHHHHHHHHHHhhHHhcCCChhhhhHHHHHHHHHHhcccccCCCCc
Confidence 56777889999999998864 2 2 6777777 1 1 11
Q ss_pred HHHHHHHHHHHHHhhcChh---hHHHHhhchhhhhhhhHhhHHHH-HhHHHHHHhHHHhhhhhhhhHHHHHHHHHHhhHh
Q psy5190 108 FLQQTLGEAFADLAQKSPE---LQEEFLCNSETQRNLTGTGEILL-NALNLFVSSVNTLCNKTIEDTLVTVRQYENARVE 183 (292)
Q Consensus 108 qtq~~lgd~F~~Ls~kEpe---L~~eF~~naetqr~m~k~G~~Ll-~aL~~f~sdl~Tf~~KAI~DTllTIkkYE~AR~E 183 (292)
++.--||++|-..|++=++ ++..+...|++.+-|...-..|- +.=.-|+.-|.-++++-.-|.-.-.|++|.-|..
T Consensus 83 q~e~~Lg~~mik~gkeLg~dSs~g~tl~~~Gesm~~i~evk~sl~~~vkq~FldpL~~l~~~elK~i~hh~KKLEgRRld 162 (366)
T KOG1118|consen 83 QTEGLLGDVMIKHGKELGDDSSFGHTLIDAGESMREIGEVKDSLDDNVKQNFLDPLQNLQLKELKDIQHHRKKLEGRRLD 162 (366)
T ss_pred cchhHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHhhhhhhH
Confidence 1122389999999986554 77778888888888877666555 4445688888888899999999999999999999
Q ss_pred HHHHHhhHHHhhccccCcccccchHHHHHHHHHHHHHHHHhHHhHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHhcCH
Q psy5190 184 YDAYRTDLELLLQVTSNVDSNCSHLDEAQRNFQTHRENFEKLRNDVVVKLRFLDENRIKVMHKQLLLFHNAISAYFSGNE 263 (292)
Q Consensus 184 YdAyrl~leem~~e~~~~~~~l~r~etaqr~~q~aK~rFdKLR~DV~vKLdLLdenRvkvm~~QL~~~~nAl~ay~sgn~ 263 (292)
||+-....-.. +-+-++.|...|.++++-++. -+.-|.=+|.-+ ..||..|..|=..||....
T Consensus 163 yD~kkkk~~K~---------~dEelrqA~eKfEESkE~aE~----sM~nlle~d~eq----vsqL~~Li~aqLdfhrqs~ 225 (366)
T KOG1118|consen 163 YDYKKKKQGKI---------KDEELRQALEKFEESKELAED----SMFNLLENDVEQ----VSQLSALIQAQLDFHRQST 225 (366)
T ss_pred HHHHHHHhccC---------ChHHHHHHHHHHHHHHHHHHH----HHHHHHhcCHHH----HHHHHHHHHHHHHHHHHHH
Confidence 99864442221 224566677777777776542 344333344444 3689999999999999999
Q ss_pred HHHHHHhhhcccccc
Q psy5190 264 PGLQATLKQFNIKTN 278 (292)
Q Consensus 264 ~~Le~tl~~F~i~~~ 278 (292)
+.|++.-....-+++
T Consensus 226 ~iL~~l~~~l~~r~r 240 (366)
T KOG1118|consen 226 QILQELQMKLFSRIR 240 (366)
T ss_pred HHHHHHHHHHhhhhh
Confidence 999887555554444
No 74
>cd07632 BAR_APPL2 The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains. Vertebrates contain two APPL proteins, APPL1 and APPL2. Both APPL proteins interact with the transcriptional repressor Reptin, acting as activators of beta-catenin/TCF-mediated trancription. APPL2 is essential for cell proliferation. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interac
Probab=96.58 E-value=0.14 Score=47.45 Aligned_cols=151 Identities=13% Similarity=0.104 Sum_probs=122.2
Q ss_pred HhhcChhhHHHHhhchhhhhhhhHhhHHHHHhH-HHHHHhHHHhhhhhhhhHHHHHHHHHHhhHhHHHHHhhHHHhhccc
Q psy5190 120 LAQKSPELQEEFLCNSETQRNLTGTGEILLNAL-NLFVSSVNTLCNKTIEDTLVTVRQYENARVEYDAYRTDLELLLQVT 198 (292)
Q Consensus 120 Ls~kEpeL~~eF~~naetqr~m~k~G~~Ll~aL-~~f~sdl~Tf~~KAI~DTllTIkkYE~AR~EYdAyrl~leem~~e~ 198 (292)
||..+...+..+..|+..-.-|+.....|+..+ .-++.-|.+|+..-|.-.+.+=|+|+.+.=+|+++..+.-.++
T Consensus 56 ~~~~D~~v~~sL~kFs~~L~el~~~h~~L~dqaq~sl~~pL~~F~KeDl~~vKe~KK~FdK~Se~~d~AL~Knaqls--- 132 (215)
T cd07632 56 LGKGDEEVISTLQYFAKVVDELNVLHSELAKQLADTMVLPIIQFREKDLTEVSTLKDLFGIASNEHDLSMAKYSRLP--- 132 (215)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCC---
Confidence 556666677888888888777777777777666 5678889999999999999999999999999999977755543
Q ss_pred cCcccccchHHH-HHHHHHHHHHHHHhHHhHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHhcCHHHHHHHhhhccc
Q psy5190 199 SNVDSNCSHLDE-AQRNFQTHRENFEKLRNDVVVKLRFLDENRIKVMHKQLLLFHNAISAYFSGNEPGLQATLKQFNI 275 (292)
Q Consensus 199 ~~~~~~l~r~et-aqr~~q~aK~rFdKLR~DV~vKLdLLdenRvkvm~~QL~~~~nAl~ay~sgn~~~Le~tl~~F~i 275 (292)
.. .+-+..+. +-..+..+|.+|-..-.|-+-+|..|.+.|-=.|..-|..|..|...||-.-++.+..-+..|--
T Consensus 133 kk--K~~E~~eae~~~~l~~sRr~F~~~ALdYV~qiN~lQ~RKKfeiLE~mLsym~Aq~TFFhQGyeL~~~~~~~~~~ 208 (215)
T cd07632 133 KK--RENEKVKAEVAKEVAYSRRKQHLSSLQYYCALNALQYRKRVAMLEPMLGYTHGQINFFKKGAELFSKKLDSFLS 208 (215)
T ss_pred cC--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21 12233333 34578899999999999999999999999999999999999999999998888888877777643
No 75
>cd07629 BAR_Atg20p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Atg20p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The function of Atg20p is unknown but it has been shown to interact with Atg11p, which plays a role in linking cargo molecules with vesicle-forming components. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=96.47 E-value=0.37 Score=43.08 Aligned_cols=144 Identities=11% Similarity=0.038 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHHHHHHhhcCh--hhHHHHhhchhhhhhhhHhhHHHHHhHH-HHHHhHHHhhhhhhhhHHHHHHHHHHhh
Q psy5190 105 VIFFLQQTLGEAFADLAQKSP--ELQEEFLCNSETQRNLTGTGEILLNALN-LFVSSVNTLCNKTIEDTLVTVRQYENAR 181 (292)
Q Consensus 105 ~l~qtq~~lgd~F~~Ls~kEp--eL~~eF~~naetqr~m~k~G~~Ll~aL~-~f~sdl~Tf~~KAI~DTllTIkkYE~AR 181 (292)
.+......||.+|..+|.-|+ +|++.+..+|.+-...+..-+.|...+. .|..-|.-++. -+...+..++......
T Consensus 37 ~l~~dl~elG~~fn~ls~~E~~~~L~~~le~~g~a~D~~~~~~~~l~~~l~~~f~EpL~E~~~-y~~s~k~vlk~R~~K~ 115 (187)
T cd07629 37 DLAEDMADLGGRFNAFSLEEQKSELAEALEKVGQAVDSTYLATEALVGSLYYNINEPLSESAQ-FAGVVRELLKYRKLKH 115 (187)
T ss_pred HHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 678888999999999999985 5888888888766555555555554443 24444444443 3444555566666666
Q ss_pred HhHHHHHhhHHHhhccccCcccccchHHHHHHHHHHHHHHHHhHH-hHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHh
Q psy5190 182 VEYDAYRTDLELLLQVTSNVDSNCSHLDEAQRNFQTHRENFEKLR-NDVVVKLRFLDENRIKVMHKQLLLFHNAISAYFS 260 (292)
Q Consensus 182 ~EYdAyrl~leem~~e~~~~~~~l~r~etaqr~~q~aK~rFdKLR-~DV~vKLdLLdenRvkvm~~QL~~~~nAl~ay~s 260 (292)
++|..-.-.+ ......+..+|+... .++..=|+-+.++|..+|..-|..|......|+.
T Consensus 116 ~Q~e~l~~~L--------------------~e~~~~~~~~~~~~~~~~~~~el~rF~~ek~~dl~~~l~~~a~~~~~~a~ 175 (187)
T cd07629 116 VQYEMTKDSL--------------------LESALVAASDDLVISSTIKQKDLPRFQREREADLREILKNYSKYHKDWAK 175 (187)
T ss_pred HHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 7776543333 111135555777775 5666667889999999999999999999999999
Q ss_pred cCHHHHHHH
Q psy5190 261 GNEPGLQAT 269 (292)
Q Consensus 261 gn~~~Le~t 269 (292)
.|.++=+.+
T Consensus 176 ~~~~~W~~~ 184 (187)
T cd07629 176 QNLEAWKEA 184 (187)
T ss_pred HHHHHHHHh
Confidence 997766553
No 76
>cd07671 F-BAR_PSTPIP1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 1. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 1 (PSTPIP1), also known as CD2 Binding Protein 1 (CD2BP1), is mainly expressed in hematopoietic cells. It is a binding partner of the cell surface receptor CD2 and PTP-PEST, a tyrosine phosphatase which functions in cell motility and Rac1 regulation. It also plays a role in the activation of the Wiskott-Aldrich syndrome protein (WASP), which couples actin rearrangement and T cell activation. Mutations in the gene encoding PSTPIP1 cause the autoinflammatory disorder known as PAPA (pyogenic sterile arthritis, pyoderma gangrenosum, and acne) syndrome. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain. F-BAR
Probab=96.42 E-value=0.43 Score=44.41 Aligned_cols=165 Identities=11% Similarity=0.146 Sum_probs=104.3
Q ss_pred HHHHHHHHHHHHHHHHhhcCh---h---hHHHHhh-------chhhhhhhhHhhHHHHHhHHHHHHhHHHhhh-------
Q psy5190 105 VIFFLQQTLGEAFADLAQKSP---E---LQEEFLC-------NSETQRNLTGTGEILLNALNLFVSSVNTLCN------- 164 (292)
Q Consensus 105 ~l~qtq~~lgd~F~~Ls~kEp---e---L~~eF~~-------naetqr~m~k~G~~Ll~aL~~f~sdl~Tf~~------- 164 (292)
+-+++...||..+..|+.+-- + |...|.. -|+.|..+..+-...+.+|..|.....--+-
T Consensus 30 eRa~iE~~Yak~L~kl~kk~~~~~e~gTl~~a~~~~~~e~e~~a~~H~~ia~~L~~~~~~l~~f~~~qke~rK~~e~~~e 109 (242)
T cd07671 30 QRAQAEERYGKELVQIARKAGGQTEINTLKASFDQLKQQIENIGNSHIQLAGMLREELKSLEEFRERQKEQRKKYEAVME 109 (242)
T ss_pred HHHHHHHHHHHHHHHHHhhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556777888888888887532 1 2222222 2455666665555555666666665544222
Q ss_pred hhhhhHHHHHHHHHHhhHhHHHHHhhHHHhhcc-----ccCcccccch----HHHHHHHHHHHHHHHH------------
Q psy5190 165 KTIEDTLVTVRQYENARVEYDAYRTDLELLLQV-----TSNVDSNCSH----LDEAQRNFQTHRENFE------------ 223 (292)
Q Consensus 165 KAI~DTllTIkkYE~AR~EYdAyrl~leem~~e-----~~~~~~~l~r----~etaqr~~q~aK~rFd------------ 223 (292)
|+.---....++.+.+|=.|...|...+...+. .......+.| +..+....+.++..|.
T Consensus 110 K~qk~~~~~~k~l~ksKk~Ye~~Cke~~~a~q~~~k~~~~~t~keleK~~~K~~k~~~~~~~a~~~Y~~~v~~l~~~~~~ 189 (242)
T cd07671 110 RVQKSKVSLYKKTMESKKTYEQRCREADEAEQTFERSSSTGNPKQSEKSQNKAKQCRDAATEAERVYKQNIEQLDKARTE 189 (242)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222335677889999999999988774311 0111112333 3333444445555554
Q ss_pred --hHHhHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHhcCHHHHHHH
Q psy5190 224 --KLRNDVVVKLRFLDENRIKVMHKQLLLFHNAISAYFSGNEPGLQAT 269 (292)
Q Consensus 224 --KLR~DV~vKLdLLdenRvkvm~~QL~~~~nAl~ay~sgn~~~Le~t 269 (292)
+==..++.+..-|++.|+..|...|+.|+|.++.-.-.+.+..+.+
T Consensus 190 w~~~~~~~~~~~Q~lEeeRi~f~K~~lw~~~n~~s~~Cv~dD~~~e~~ 237 (242)
T cd07671 190 WETEHILTCEVFQLQEDDRITILRNALWVHCNHFSMQCVKDDELYEEV 237 (242)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHcCcHHHHHHH
Confidence 2223679999999999999999999999999999888877777664
No 77
>KOG0521|consensus
Probab=96.39 E-value=0.14 Score=55.25 Aligned_cols=159 Identities=18% Similarity=0.203 Sum_probs=131.2
Q ss_pred HHHHHHHHHHHHHHHHhh-c--ChhhHHHHhhchhhhhhhhHhhHHHHHhHHH-HHHhHHHhhhhhhhhHHHHHHHHHHh
Q psy5190 105 VIFFLQQTLGEAFADLAQ-K--SPELQEEFLCNSETQRNLTGTGEILLNALNL-FVSSVNTLCNKTIEDTLVTVRQYENA 180 (292)
Q Consensus 105 ~l~qtq~~lgd~F~~Ls~-k--EpeL~~eF~~naetqr~m~k~G~~Ll~aL~~-f~sdl~Tf~~KAI~DTllTIkkYE~A 180 (292)
..++..++||..+.++.. . ++.+++-|.+|+..-+-+...-..|+..+.. |...+..|++.-+-..+..=+.++.|
T Consensus 53 ~~~~~~~~f~~~~~d~~~~~~~~~~~~~~l~~fs~~~~e~~~~~~~L~~q~~~~~~~~l~~f~k~dl~~v~~~kk~f~ka 132 (785)
T KOG0521|consen 53 EFVQATEQFGKGLKDLFSLGQDEEVISETLQKFSKVLRELGTYHTELRSQLAHTLSLPLSQFVKGDLHEVKELKKLFEKA 132 (785)
T ss_pred HHHHHHHHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhHHHHHH
Confidence 677888888887777733 3 5668999999999988888888888877765 45679999999999999999999999
Q ss_pred hHhHHHHHhhHHHhhccccCcccccchHHHHHHHHHHHHHHHHhHHhHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHh
Q psy5190 181 RVEYDAYRTDLELLLQVTSNVDSNCSHLDEAQRNFQTHRENFEKLRNDVVVKLRFLDENRIKVMHKQLLLFHNAISAYFS 260 (292)
Q Consensus 181 R~EYdAyrl~leem~~e~~~~~~~l~r~etaqr~~q~aK~rFdKLR~DV~vKLdLLdenRvkvm~~QL~~~~nAl~ay~s 260 (292)
..||+..+.+..++....++ .. ..++-.-+..+|.+|..-+.|-.-++--+..++--.|-..|..|.+|=..||.
T Consensus 133 ~~~~d~a~~k~~~l~k~~~~--~~---~~e~~~~l~~~r~~f~~~~~~y~~~ln~~q~kk~~~~le~~l~~~~aq~~fF~ 207 (785)
T KOG0521|consen 133 SEEYDLALVKYSRLPKKRRS--KV---KTEVEEELAAARRKFQLTALDYVLALNVLQAKKQFEILETLLGFMHAQINFFK 207 (785)
T ss_pred HhhHHHHHHHhhhhhhcccc--ch---hHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHHHHHHhccchhc
Confidence 99999999998887755431 11 12233378899999999999999999999999999999999999999999999
Q ss_pred cCHHHHHH
Q psy5190 261 GNEPGLQA 268 (292)
Q Consensus 261 gn~~~Le~ 268 (292)
++.+.+.+
T Consensus 208 ~g~~l~~~ 215 (785)
T KOG0521|consen 208 QGEDLLSQ 215 (785)
T ss_pred ccHhHHhh
Confidence 99766653
No 78
>cd07667 BAR_SNX30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX30 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=96.38 E-value=0.31 Score=45.78 Aligned_cols=155 Identities=13% Similarity=0.159 Sum_probs=113.7
Q ss_pred HHHHHHHHHHHHHHHHhhcChhhHHHHhhchhhhhhhhHhhHHHHHhH-HHHHHhHHHhhhhhhhhHHHHHHHHHHhhHh
Q psy5190 105 VIFFLQQTLGEAFADLAQKSPELQEEFLCNSETQRNLTGTGEILLNAL-NLFVSSVNTLCNKTIEDTLVTVRQYENARVE 183 (292)
Q Consensus 105 ~l~qtq~~lgd~F~~Ls~kEpeL~~eF~~naetqr~m~k~G~~Ll~aL-~~f~sdl~Tf~~KAI~DTllTIkkYE~AR~E 183 (292)
.+..-++.||..|..++--||+|.+.+..++......++.-..|...+ ..|+.+|.-|.. =+.--+..+|+=++-.++
T Consensus 83 ~l~~d~~e~~~~f~~ws~lE~~l~~~L~~~a~~~~~~s~~l~~l~~~~~~~yl~~Lke~~~-Y~~slk~vlK~RdqkQ~d 161 (240)
T cd07667 83 EYLVELREYGPVYSTWSGLEGELAEPLEGVSACIGNCSTALEELTEDMTEDFLPVLREYIL-YSESMKNVLKKRDQVQAE 161 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 577778999999999999999999888888877666666555666655 446666665554 333444556666666666
Q ss_pred HHHHHhhHHHhhccccCcccccchHHHHHHHHHHHHHHHHhHHhHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHhcCH
Q psy5190 184 YDAYRTDLELLLQVTSNVDSNCSHLDEAQRNFQTHRENFEKLRNDVVVKLRFLDENRIKVMHKQLLLFHNAISAYFSGNE 263 (292)
Q Consensus 184 YdAyrl~leem~~e~~~~~~~l~r~etaqr~~q~aK~rFdKLR~DV~vKLdLLdenRvkvm~~QL~~~~nAl~ay~sgn~ 263 (292)
|.+- ++.+. . --.|+++....+.++..+++-.=.+|..=++.++.+|-..|..+|..|.++=..||.+|.
T Consensus 162 ~E~l---~E~l~--~-----rre~~~kLe~~ie~~~~~ve~f~~~~~~E~~~Fe~~K~~e~k~~l~~~Ad~~i~fy~~~~ 231 (240)
T cd07667 162 YEAK---LEAVA--L-----RKEERPKVPTDVEKCQDRVECFNADLKADMERWQNNKRQDFRQLLMGMADKNIQYYEKCL 231 (240)
T ss_pred HHHH---HHHHH--H-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6653 22221 1 114555666667777777777778899999999999999999999999999999999998
Q ss_pred HHHHHHh
Q psy5190 264 PGLQATL 270 (292)
Q Consensus 264 ~~Le~tl 270 (292)
.+-+..+
T Consensus 232 ~~We~~l 238 (240)
T cd07667 232 TAWESII 238 (240)
T ss_pred HHHHHHc
Confidence 8877654
No 79
>cd07650 F-BAR_Syp1p_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of yeast Syp1 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Syp1p is associated with septins, a family of GTP-binding proteins that serve as elements of septin filaments, which are required for cell morphogenesis and division. Syp1p regulates cell-cycle dependent septin cytoskeletal dynamics in yeast. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCH domain Only (FCHO) proteins and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=96.26 E-value=0.46 Score=43.58 Aligned_cols=61 Identities=18% Similarity=0.294 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHhHHhHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHhcCHHHHHHHhhh
Q psy5190 212 QRNFQTHRENFEKLRNDVVVKLRFLDENRIKVMHKQLLLFHNAISAYFSGNEPGLQATLKQ 272 (292)
Q Consensus 212 qr~~q~aK~rFdKLR~DV~vKLdLLdenRvkvm~~QL~~~~nAl~ay~sgn~~~Le~tl~~ 272 (292)
.....+++.++++==..++++++-||+.|++.|..-|+.|+|.++.+...+.+.-+.+++.
T Consensus 145 ~~~l~~~~~~We~~~~~~~e~fQ~leeeRl~~lk~~l~~y~~~~sd~~~~~~~~~E~~~~~ 205 (228)
T cd07650 145 VSDLEEARQQWDSQAPFLFELLQAIDEERLNHLKDVLLQFQTHESDYALRTTESAEECMNQ 205 (228)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHhhHHHHHHHHH
Confidence 5677788888888888899999999999999999999999999999999987777766554
No 80
>KOG3725|consensus
Probab=95.95 E-value=1.2 Score=43.02 Aligned_cols=96 Identities=17% Similarity=0.221 Sum_probs=64.2
Q ss_pred HHHhhHhHHHHHhhHHHhhcccc----Ccc-cccchHHHHHHHHHHHHHHHHhHHhHHHHHHhhhcccchhHHHHHHHHH
Q psy5190 177 YENARVEYDAYRTDLELLLQVTS----NVD-SNCSHLDEAQRNFQTHRENFEKLRNDVVVKLRFLDENRIKVMHKQLLLF 251 (292)
Q Consensus 177 YE~AR~EYdAyrl~leem~~e~~----~~~-~~l~r~etaqr~~q~aK~rFdKLR~DV~vKLdLLdenRvkvm~~QL~~~ 251 (292)
..+-|+.-||.-..+|..+..+- ++. +.-..++.+.+.++-+.+.||+--.-.--=|+=+..-|++-+ .-|.-|
T Consensus 162 LqnkRLDLDAcKsRLKKAKaae~q~~rN~~~s~~~~ie~aEqelRvaQ~EFDrQaEiTrLLLEGIsstH~nhL-rCL~dF 240 (375)
T KOG3725|consen 162 LQNKRLDLDACKSRLKKAKAAELQTVRNSKTSGGFTIEQAEQELRVAQAEFDRQAEITRLLLEGISSTHNNHL-RCLRDF 240 (375)
T ss_pred HhhcccChHHHHHHHHHhhhhhhhccccccccCcchHhHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhHH-HHHHHH
Confidence 45669999999888887765432 111 133567788889999999999754433222333333444433 246789
Q ss_pred HHHHHHHHhcCHHHHHHHhhhc
Q psy5190 252 HNAISAYFSGNEPGLQATLKQF 273 (292)
Q Consensus 252 ~nAl~ay~sgn~~~Le~tl~~F 273 (292)
..|-+.||..|++.|-..-+|.
T Consensus 241 VeaQmtyYAQcyq~MlDLQkqL 262 (375)
T KOG3725|consen 241 VEAQMTYYAQCYQLMLDLQKQL 262 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999987655553
No 81
>cd07680 F-BAR_PACSIN1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 1 (PACSIN1). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 1 or Syndapin I is expressed specifically in the brain and is localized in neurites and synaptic boutons. It binds the brain-specific proteins dynamin I, synaptojanin, synapsin I, and neural Wiskott-Aldrich syndrome protein (nWASP), and functions as a link between the cytoskeletal machinery and synaptic vesicle endocytosis. PACSIN 1 interacts with huntingtin and may be implicated in the neuropatholog
Probab=95.94 E-value=0.91 Score=42.94 Aligned_cols=180 Identities=17% Similarity=0.280 Sum_probs=101.6
Q ss_pred cccchhHHHHHHHHHHhCCCCccCchhhhHHHHHHHHHHHHHHHHHHHHhhc-------Chh---hHHHHhhc-------
Q psy5190 72 WGISTYKCTRQIMYEKLGKSTRTVDSDLKSRVLVIFFLQQTLGEAFADLAQK-------SPE---LQEEFLCN------- 134 (292)
Q Consensus 72 W~~~tyk~TKQ~l~EklGk~~~TvD~ELeakIl~l~qtq~~lgd~F~~Ls~k-------Epe---L~~eF~~n------- 134 (292)
|.+.-|+.|.+.|.- |.+.+ -||..-+=+-..+.+.|+.-+..|+.+ .|+ |...|...
T Consensus 2 w~~~~y~~~~kr~~~----g~~~~-~dl~~f~kERA~IE~~Yak~L~~Lakk~~~~~~~~~~~Gtl~~aw~~i~~etE~i 76 (258)
T cd07680 2 WEVGNYKRTVKRIDD----GHRLC-NDLMNCVQERAKIEKAYGQQLTDWAKRWRQLIEKGPQYGSLERAWGAIMTEADKV 76 (258)
T ss_pred CCCCchHHHHHHHHh----hHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHH
Confidence 999999999988764 22333 233332225677778888888888874 344 33333333
Q ss_pred hhhhhhhhHhh-HHHHHhH-----HHHHHhHHH----------hhhhhhhhHHHHHHHHHHhhHhHHHHHhhHHHhhccc
Q psy5190 135 SETQRNLTGTG-EILLNAL-----NLFVSSVNT----------LCNKTIEDTLVTVRQYENARVEYDAYRTDLELLLQVT 198 (292)
Q Consensus 135 aetqr~m~k~G-~~Ll~aL-----~~f~sdl~T----------f~~KAI~DTllTIkkYE~AR~EYdAyrl~leem~~e~ 198 (292)
|+.|..+..+- ......| ..++.++-+ =..||=---..-+++++.+|=.|...|.+-+......
T Consensus 77 a~~H~~la~~L~~e~~e~~r~~qk~~~~k~~~~~~ke~K~~e~~~~KaQK~~~k~~k~v~~sKk~Ye~~Cke~~~A~~~~ 156 (258)
T cd07680 77 SELHQEVKNNLLNEDLEKVKNWQKDAYHKQIMGGFKETKEAEDGFRKAQKPWAKKMKELEAAKKAYHLACKEEKLAMTRE 156 (258)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333211 1222222 112222211 0111111111345678899999999998776544221
Q ss_pred c-----C--cccccch----HHHHHHHHHHHHHHHH--------------hHHhHHHHHHhhhcccchhHHHHHHHHHHH
Q psy5190 199 S-----N--VDSNCSH----LDEAQRNFQTHRENFE--------------KLRNDVVVKLRFLDENRIKVMHKQLLLFHN 253 (292)
Q Consensus 199 ~-----~--~~~~l~r----~etaqr~~q~aK~rFd--------------KLR~DV~vKLdLLdenRvkvm~~QL~~~~n 253 (292)
. . ....+.| ++.++..++.++..|+ .-=..|+.+.+-++++|+..|...|+.+|+
T Consensus 157 ~~a~~d~~~s~~q~eK~~~k~~k~~~~~~~sk~~Y~~~l~~ln~~~~~y~~~m~~vfd~~Q~~Ee~Ri~flk~~l~~~~~ 236 (258)
T cd07680 157 ANSKAEQSVTPEQQKKLQDKVDKCKQDVQKTQEKYEKVLDDVGKTTPQYMENMEQVFEQCQQFEEKRLVFLKEVLLDIKR 236 (258)
T ss_pred HhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1 1113333 3344445555555444 334467999999999999999999999998
Q ss_pred HHH
Q psy5190 254 AIS 256 (292)
Q Consensus 254 Al~ 256 (292)
.+.
T Consensus 237 ~l~ 239 (258)
T cd07680 237 HLN 239 (258)
T ss_pred HcC
Confidence 874
No 82
>cd07646 I-BAR_IMD_IRSp53 Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Insulin Receptor tyrosine kinase Substrate p53. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. IRSp53 (Insulin Receptor tyrosine kinase Substrate p53) is also known as BAIAP2 (Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2). It is a scaffolding protein that takes part in many signaling pathways including Cdc42-induced filopodia formation, Rac-mediated lamellipodia extension, and spine morphogenesis. IRSp53 exists as multiple splicing variants that differ mainly at the C-termini. One variant (T-form) is expressed exclusively in human breast cancer cells. The gene encoding IRSp53 is a putative susceptibility gene for Gilles de la Tourette syndrome. IRSp53 contains an N-terminal IMD, a CRIB (Cdc42 and Rac interactive binding motif), an SH3 domain, and a WASP
Probab=95.46 E-value=2.3 Score=39.98 Aligned_cols=171 Identities=16% Similarity=0.243 Sum_probs=98.7
Q ss_pred chhhhHHH---------H-HHHHHHHHHHHHHHHHhh---c---ChhhHHHHhhchhhhhhhhHhhHHHHHhHHHHHHhH
Q psy5190 96 DSDLKSRV---------L-VIFFLQQTLGEAFADLAQ---K---SPELQEEFLCNSETQRNLTGTGEILLNALNLFVSSV 159 (292)
Q Consensus 96 D~ELeakI---------l-~l~qtq~~lgd~F~~Ls~---k---EpeL~~eF~~naetqr~m~k~G~~Ll~aL~~f~sdl 159 (292)
-+.|+.=| | .++.+..+|.|+|+.||. . +.+|+..+..-++.||.+..+-+.. ++.|+.+|
T Consensus 21 nP~lrnlv~~G~~Y~kal~a~~~a~~~y~dAl~Kige~A~~s~gSkeLG~~L~~m~~~hr~i~~~le~~---lk~Fh~el 97 (232)
T cd07646 21 NPSLRNFIAMGKNYEKALASVTFAAKGYFDALVKMGELASESQGSKELGDVLFQMAEVHRQIQNQLEEM---LKSFHNEL 97 (232)
T ss_pred ChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 36666666 2 688999999999998876 2 3359999999999999988765555 67788888
Q ss_pred HHhhhhhhh-hHHH---HHHHHHHh----hHhHHHHHhhHHHhhccccCcccccchHHHHHHHHH---HHHHHHHhHHhH
Q psy5190 160 NTLCNKTIE-DTLV---TVRQYENA----RVEYDAYRTDLELLLQVTSNVDSNCSHLDEAQRNFQ---THRENFEKLRND 228 (292)
Q Consensus 160 ~Tf~~KAI~-DTll---TIkkYE~A----R~EYdAyrl~leem~~e~~~~~~~l~r~etaqr~~q---~aK~rFdKLR~D 228 (292)
-+=+.+-++ |+.- |.|+|+.- =-.|.-...+|+.+.-..++...+.-.-.+-.++++ .-+...+..-.|
T Consensus 98 i~pLE~k~E~D~k~i~a~~Kky~~e~k~k~~sleK~qseLKKlRrKsqg~k~~~ky~~ke~q~~~~~~~~q~ele~f~~~ 177 (232)
T cd07646 98 LTQLEQKVELDSRYLTAALKKYQTEHRSKGESLEKCQAELKKLRKKSQGSKNPQKYSDKELQYIEAISNKQGELENYVSD 177 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888 7764 55666321 012333334444444332221111111122222222 223333333333
Q ss_pred HHHHHhhhcccc-hhHHHHHHHHHHHHHHHHHhcCHHHHHHHh
Q psy5190 229 VVVKLRFLDENR-IKVMHKQLLLFHNAISAYFSGNEPGLQATL 270 (292)
Q Consensus 229 V~vKLdLLdenR-vkvm~~QL~~~~nAl~ay~sgn~~~Le~tl 270 (292)
-+.. -|++|.| .-.+.--=..+.+..++||++....|.+-+
T Consensus 178 ~~k~-Al~EErRRycflvdk~C~~~~~~~~yh~k~~~lL~~kl 219 (232)
T cd07646 178 GYKT-ALTEERRRYCFLVEKQCAVAKNSIAYHSKGKELLTQKL 219 (232)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3322 2333332 223333333556678899999999888754
No 83
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=95.40 E-value=2.4 Score=39.86 Aligned_cols=152 Identities=9% Similarity=0.048 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHHHHHHhhcChhhHHHHhhchhhhhhhh----HhhHHHHHhHHHHHHhHHHhhhhhhhhHHHHHHHHHHh
Q psy5190 105 VIFFLQQTLGEAFADLAQKSPELQEEFLCNSETQRNLT----GTGEILLNALNLFVSSVNTLCNKTIEDTLVTVRQYENA 180 (292)
Q Consensus 105 ~l~qtq~~lgd~F~~Ls~kEpeL~~eF~~naetqr~m~----k~G~~Ll~aL~~f~sdl~Tf~~KAI~DTllTIkkYE~A 180 (292)
++.+...+||-.|.-+|.-|++|++.|..+|..-..++ +....|...+...+.|.-.|+. + .+.++++=+++
T Consensus 86 ey~~~~~~fgk~~~lws~~E~~L~~~L~~~a~~~d~~~~~~~~~~~~l~~~f~~~Lkeyv~y~~-s---lK~vlk~R~~~ 161 (243)
T cd07666 86 EYFEELKEYGPIYTLWSASEEELADSLKGMASCIDRCCKATDKRMKGLSEQLLPVIHEYVLYSE-T---LMGVIKRRDQI 161 (243)
T ss_pred HHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H---HHHHHHHHHHH
Confidence 46666778999999999999999999999998876443 3444555555555555544443 2 22333443444
Q ss_pred hHhHHHHHhhHHHhhccccCcccccchHHHHHHHHHHHHHHHHhHHhHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHh
Q psy5190 181 RVEYDAYRTDLELLLQVTSNVDSNCSHLDEAQRNFQTHRENFEKLRNDVVVKLRFLDENRIKVMHKQLLLFHNAISAYFS 260 (292)
Q Consensus 181 R~EYdAyrl~leem~~e~~~~~~~l~r~etaqr~~q~aK~rFdKLR~DV~vKLdLLdenRvkvm~~QL~~~~nAl~ay~s 260 (292)
..+|..-+-.+.....+- + ..-..+++.+.+++.+ -.++-.=++=++.+|+++|...+..|......|+.
T Consensus 162 Q~~le~k~e~l~k~~~dr-~--~~~~ev~~~e~kve~a-------~~~~k~e~~Rf~~~k~~D~k~~~~~yae~~i~~~~ 231 (243)
T cd07666 162 QAELDSKVEALANKKADR-D--LLKEEIEKLEDKVECA-------NNALKADWERWKQNMQTDLRSAFTDMAENNISYYE 231 (243)
T ss_pred HHHHHHHHHHHHhhhhhH-H--HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444443332222211111 0 0112344455555444 22233445678999999999999999999999999
Q ss_pred cCHHHHHHHh
Q psy5190 261 GNEPGLQATL 270 (292)
Q Consensus 261 gn~~~Le~tl 270 (292)
++...-+..|
T Consensus 232 ~~~~~We~fl 241 (243)
T cd07666 232 ECLATWESFL 241 (243)
T ss_pred HHHHHHHHHh
Confidence 8877766543
No 84
>cd07620 BAR_SH3BP1 The Bin/Amphiphysin/Rvs (BAR) domain of SH3-domain Binding Protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. SH3-domain binding protein 1 (SH3BP1 or 3BP-1) is a Rac GTPase activating protein that inhibits Rac-mediated platelet-derived growth factor (PDGF)-induced membrane ruffling. SH3BP1 contains an N-terminal BAR domain followed by a GAP domain for Rho and Rac GTPases and a C-terminal proline-rich domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=95.39 E-value=1.4 Score=41.88 Aligned_cols=119 Identities=7% Similarity=0.126 Sum_probs=80.7
Q ss_pred HHHHHhHHHhhhhhhhhHHHHHHHHHHhhHhHHHHHhhHHHhhcc-ccCc-----------ccccchHHHHHHHHHHHHH
Q psy5190 153 NLFVSSVNTLCNKTIEDTLVTVRQYENARVEYDAYRTDLELLLQV-TSNV-----------DSNCSHLDEAQRNFQTHRE 220 (292)
Q Consensus 153 ~~f~sdl~Tf~~KAI~DTllTIkkYE~AR~EYdAyrl~leem~~e-~~~~-----------~~~l~r~etaqr~~q~aK~ 220 (292)
+-|+.=|+.+.++-|++...--|+.+..|++||+.+........- ..+. ..+..|++.......++..
T Consensus 106 ~~vl~PL~~L~e~dL~~I~k~rKkL~k~~LD~D~~K~R~~~a~k~s~~~~~~~~~~~~~~~~~~~~K~~~lkeE~eea~~ 185 (257)
T cd07620 106 KDVLQPLNKLSEEDLPEILKNKKQFAKLTTDWNSAKSRSPQAAGRSPRSGGRSEEVGEHQGIRRANKGEPLKEEEEECWR 185 (257)
T ss_pred HHHHHHHHHhHHhhHHHHHHHHHHHHhHHhhHHHHHHHHHHhhccccCCccccccccccccccccccccccHHHHHHHHH
Confidence 346666778888999999999999999999999999776432111 1100 0123454445556666666
Q ss_pred HHHhHHhHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHhcCHHHHHHHhhh
Q psy5190 221 NFEKLRNDVVVKLRFLDENRIKVMHKQLLLFHNAISAYFSGNEPGLQATLKQ 272 (292)
Q Consensus 221 rFdKLR~DV~vKLdLLdenRvkvm~~QL~~~~nAl~ay~sgn~~~Le~tl~~ 272 (292)
||+.=|.-...=|==|-++- -...++|..|..+-+.||....+.|+..+-.
T Consensus 186 K~E~~kd~~~a~Mynfl~kE-~e~a~~l~~lveaQ~~YHrqsl~~Le~~l~~ 236 (257)
T cd07620 186 KLEQCKDQYSADLYHFATKE-DSYANYFIRLLELQAEYHKNSLEFLDKNITE 236 (257)
T ss_pred HHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66665554433332222232 3467899999999999999999999887654
No 85
>cd07681 F-BAR_PACSIN3 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 3 (PACSIN3). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 3 or Syndapin III is expressed ubiquitously and regulates glucose uptake in adipocytes through its role in GLUT1 trafficking. It also modulates the subcellular localization and stimulus-specific function of the cation channel TRPV4. PACSIN 3 contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to
Probab=94.69 E-value=4.1 Score=38.71 Aligned_cols=184 Identities=17% Similarity=0.220 Sum_probs=100.0
Q ss_pred cccchhHHHHHHHHHHhCCCCccCchhhhHHHHHHHHHHHHHHHHHHHHhhc-------Chh---hHHHHhhchhhhhhh
Q psy5190 72 WGISTYKCTRQIMYEKLGKSTRTVDSDLKSRVLVIFFLQQTLGEAFADLAQK-------SPE---LQEEFLCNSETQRNL 141 (292)
Q Consensus 72 W~~~tyk~TKQ~l~EklGk~~~TvD~ELeakIl~l~qtq~~lgd~F~~Ls~k-------Epe---L~~eF~~naetqr~m 141 (292)
|.+.-|+.|.+.|.. |.+++ -||..-+=+-+.+.+.|+..+..||.+ .|+ |...|-.+-.....+
T Consensus 2 w~~g~Y~~~vkR~~d----G~~~C-~el~~f~~eRA~IE~~YAk~L~~lakk~~~~~e~g~eyGTL~~sw~~~~~e~E~i 76 (258)
T cd07681 2 WEAGNYRRTVKRIED----GYRLC-NDLVSCFQERAKIEKGYAQQLSDWARKWRGIVEKGPQYGTLEKAWHAFLTAAERL 76 (258)
T ss_pred CCCcchHHHHHHHHh----HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhcccccChHHHHHHHHHHHHHHH
Confidence 999999988776643 44555 345544436677788899988888875 222 333333332212222
Q ss_pred hHhhHHHHHhHHH-HHHhHHH---------hh-----hhhhhhHH--------HHHHHHHHhhHhHHHHHhhHHHhhccc
Q psy5190 142 TGTGEILLNALNL-FVSSVNT---------LC-----NKTIEDTL--------VTVRQYENARVEYDAYRTDLELLLQVT 198 (292)
Q Consensus 142 ~k~G~~Ll~aL~~-f~sdl~T---------f~-----~KAI~DTl--------lTIkkYE~AR~EYdAyrl~leem~~e~ 198 (292)
+..-..|...|.- ....|.+ |. .|-++|.. .-.++.+++|--|...|-.-+.....+
T Consensus 77 a~~H~~l~~~L~~E~~e~ir~~QKe~~hk~~~~g~ke~K~~e~~f~kaqK~w~k~~kk~~~sKk~Y~~~ck~e~~a~~~e 156 (258)
T cd07681 77 SEIHLELRENLVGEDSEKVRAWQKEAFHKQMIGGFRESKEAEEGFRKAQKPWVKKLKEVESSKKGYHAARKDERTAQTRE 156 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2211222222211 1111111 11 23333331 113445566777776663222211000
Q ss_pred -----cC--cc----cccchHHHHHHHHHHHHHHHHhHH--------------hHHHHHHhhhcccchhHHHHHHHHHHH
Q psy5190 199 -----SN--VD----SNCSHLDEAQRNFQTHRENFEKLR--------------NDVVVKLRFLDENRIKVMHKQLLLFHN 253 (292)
Q Consensus 199 -----~~--~~----~~l~r~etaqr~~q~aK~rFdKLR--------------~DV~vKLdLLdenRvkvm~~QL~~~~n 253 (292)
++ .. ....|++.++..++.++++|.+-= .-|+.+.+-+++.|+..+...|..||+
T Consensus 157 ~~~k~~~~~~~~q~~K~~~kleK~~~~~~k~~~~Y~~~v~~L~~~~~~w~e~m~~~~d~~Q~~EeeRi~flK~~L~~~~~ 236 (258)
T cd07681 157 THAKADSTVSQEQLRKLQDRVEKCTQEAEKAKEQYEKALEELNRYNPRYMEDMEQAFEICQEAERKRLCFFKEMLLDLHQ 236 (258)
T ss_pred HhhccCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 00 122456667777777777665533 346899999999999999999999999
Q ss_pred HHHHHHh
Q psy5190 254 AISAYFS 260 (292)
Q Consensus 254 Al~ay~s 260 (292)
.|.-+-.
T Consensus 237 ~l~~~~~ 243 (258)
T cd07681 237 HLDLSSS 243 (258)
T ss_pred HHhhhcc
Confidence 8865433
No 86
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l
Probab=94.62 E-value=2.7 Score=38.17 Aligned_cols=165 Identities=15% Similarity=0.124 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHHHHHHhhc-------C----hhhHHHHhhc-------hhhhhhhhHhhH-HHHHhHHHHHHhHHHhh--
Q psy5190 105 VIFFLQQTLGEAFADLAQK-------S----PELQEEFLCN-------SETQRNLTGTGE-ILLNALNLFVSSVNTLC-- 163 (292)
Q Consensus 105 ~l~qtq~~lgd~F~~Ls~k-------E----peL~~eF~~n-------aetqr~m~k~G~-~Ll~aL~~f~sdl~Tf~-- 163 (292)
+-+.+.+.||..+..|+.+ . ..+...|... |..|..++.+.. .+..+|.-|..+...-.
T Consensus 30 eRa~iE~eYak~L~kLa~k~~~~~~~~~~~~~s~~~aw~~i~~e~~~~a~~H~~~a~~l~~~v~~~l~~~~~~~~~~rK~ 109 (251)
T cd07653 30 ERAAIEQEYAKKLRKLVKKYLPKKKEEDEYSFSSVKAFRSILNEVNDIAGQHELIAENLNSNVCKELKTLISELRQERKK 109 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566677777777777652 1 1222333322 355666655554 45577777776655444
Q ss_pred -----hhhhhhHHHHHHHHHHhhHhHHHHHhhHHHhhccccCc----ccccchHHHHHHHHHHHHH--------------
Q psy5190 164 -----NKTIEDTLVTVRQYENARVEYDAYRTDLELLLQVTSNV----DSNCSHLDEAQRNFQTHRE-------------- 220 (292)
Q Consensus 164 -----~KAI~DTllTIkkYE~AR~EYdAyrl~leem~~e~~~~----~~~l~r~etaqr~~q~aK~-------------- 220 (292)
.++-.+-...++.++.+|--|..+|-+.+......... ...-..+++++..+..+..
T Consensus 110 ~~~~~~kl~~~~~~~~~~l~kskk~Y~~~~ke~~~a~~k~~~~~~~~~~s~~~~eK~~~k~~k~~~~~~~a~~~Y~~~l~ 189 (251)
T cd07653 110 HLSEGSKLQQKLESSIKQLEKSKKAYEKAFKEAEKAKQKYEKADADMNLTKADVEKAKANANLKTQAAEEAKNEYAAQLQ 189 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445556678888899999999997776654322110 0011234444433333322
Q ss_pred --------HHHhHHhHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHhcCHHHHHHH
Q psy5190 221 --------NFEKLRNDVVVKLRFLDENRIKVMHKQLLLFHNAISAYFSGNEPGLQAT 269 (292)
Q Consensus 221 --------rFdKLR~DV~vKLdLLdenRvkvm~~QL~~~~nAl~ay~sgn~~~Le~t 269 (292)
-|...=.+++..++-|++.|++.|..-|..|.+..........+.+..+
T Consensus 190 ~~N~~~~~~y~~~~p~~~~~~q~le~~ri~~~k~~l~~~~~~~~~~~~~~~~~~~~i 246 (251)
T cd07653 190 KFNKEQRQHYSTDLPQIFDKLQELDEKRINRTVELLLQAAEIERKVIPIIAKCLDGI 246 (251)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhH
Confidence 2233333567778889999999999999999999888777666555543
No 87
>cd07685 F-BAR_Fes The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) tyrosine kinase. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), is a cytoplasmic (or nonreceptor) tyrosine kinase whose gene was first isolated from tumor-causing retroviruses. It is expressed in myeloid, vascular endothelial, epithelial, and neuronal cells, and plays important roles in cell growth and differentiation, angiogenesis, inflammation and immunity, and cytoskeletal regulation. Fes kinase has also been implicated as a tumor suppressor in colorectal cancer. It contains an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane def
Probab=94.46 E-value=4.2 Score=38.37 Aligned_cols=90 Identities=11% Similarity=0.097 Sum_probs=62.3
Q ss_pred hhhhhHhhHHHHHhHHHHHHhHHHhhhhhhhhHHHHHHHHHHhhHhHHHHHhhHHHhhccccCcccccchHHHHHHHHHH
Q psy5190 138 QRNLTGTGEILLNALNLFVSSVNTLCNKTIEDTLVTVRQYENARVEYDAYRTDLELLLQVTSNVDSNCSHLDEAQRNFQT 217 (292)
Q Consensus 138 qr~m~k~G~~Ll~aL~~f~sdl~Tf~~KAI~DTllTIkkYE~AR~EYdAyrl~leem~~e~~~~~~~l~r~etaqr~~q~ 217 (292)
-..|...-..+.+.+.--+++++.... ..|-..-+.+|-+|+..|-+++.....-.. ++ +....+.
T Consensus 100 Ls~L~~~k~~~rK~~~~~~q~i~~e~~------~~t~~eveK~Kk~Y~~~c~~~e~AR~K~ek--as------~~K~~~K 165 (237)
T cd07685 100 LSLLIRDKQQLRKTFSEQWQLLKQEYT------KTTQQDIEKLKSQYRSLAKDSAQAKRKYQE--AS------KDKDRDK 165 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cc------cchhHHH
Confidence 356666777888888888888888777 334456789999999999999887644322 11 2356777
Q ss_pred HHHHHHhH-------HhHHHHHHhhhcccchhH
Q psy5190 218 HRENFEKL-------RNDVVVKLRFLDENRIKV 243 (292)
Q Consensus 218 aK~rFdKL-------R~DV~vKLdLLdenRvkv 243 (292)
+++||.++ ++|=+.|| ..+||++.
T Consensus 166 ~~EKy~~m~~KL~~~hN~YlL~I--~~An~~kd 196 (237)
T cd07685 166 AKEKYVKSLWKLYALHNEYVLAV--RAAQLHHQ 196 (237)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHH--HHHHHHHH
Confidence 77777776 77777666 34555443
No 88
>cd07679 F-BAR_PACSIN2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 2 (PACSIN2). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 2 or Syndapin II is expressed ubiquitously and is involved in the regulation of tubulin polymerization. It associates with Golgi membranes and forms a complex with dynamin II which is crucial in promoting vesicle formation from the trans-Golgi network. PACSIN 2 contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave su
Probab=94.08 E-value=5 Score=38.22 Aligned_cols=179 Identities=15% Similarity=0.293 Sum_probs=106.8
Q ss_pred cccchhHHHHHHHHHHhCCCCccCchhhhHHHHHHHHHHHHHHHHHHHHhhc-------Chh---hHHHHhhc-hhhhhh
Q psy5190 72 WGISTYKCTRQIMYEKLGKSTRTVDSDLKSRVLVIFFLQQTLGEAFADLAQK-------SPE---LQEEFLCN-SETQRN 140 (292)
Q Consensus 72 W~~~tyk~TKQ~l~EklGk~~~TvD~ELeakIl~l~qtq~~lgd~F~~Ls~k-------Epe---L~~eF~~n-aetqr~ 140 (292)
|.+.-|+.|=|.|.. |.+.+ -||..-|=+-+.+.+.||.-+..+|.+ .|+ |..+|-.+ +++- .
T Consensus 2 w~~g~Y~~~vkR~~D----G~~~C-~dl~~~~~ERA~IE~~Yak~L~~~akkw~~~ie~gpeyGTl~~aw~~~~~Eae-~ 75 (258)
T cd07679 2 WEVGNYKRTVKRIDD----GHRLC-NDLMNCLHERARIEKVYAQQLTEWAKRWRQLVEKGPQYGTVEKAWCALMSEAE-K 75 (258)
T ss_pred CCCCchHHHHHHHHh----HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCccchHHHHHHHHHHHHH-H
Confidence 899999988777654 44555 455554436678888999999999877 233 33333322 1111 1
Q ss_pred hhH----hhHHHHHh-HHHH------------H------HhHHHhhhhhhhhHHHHHHHHHHhhHhHHHHHhhHHHhhcc
Q psy5190 141 LTG----TGEILLNA-LNLF------------V------SSVNTLCNKTIEDTLVTVRQYENARVEYDAYRTDLELLLQV 197 (292)
Q Consensus 141 m~k----~G~~Ll~a-L~~f------------~------sdl~Tf~~KAI~DTllTIkkYE~AR~EYdAyrl~leem~~e 197 (292)
++. -...|+.. +..| . -++++-..||=-.=.--.++.+.||-.|...|.+-+.....
T Consensus 76 ~s~~H~~l~~~L~~e~~e~ir~wQKe~~hk~~~~~~Ke~k~~e~~f~KaQKpw~k~~kkv~~aKk~Y~~aCk~e~~A~~~ 155 (258)
T cd07679 76 VSELHLEVKASLMNEDFEKIKNWQKEAFHKQMMGGFKETKEAEDGFRKAQKPWAKKLKEVEAAKKAYHTACKEEKLATSR 155 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 111 11222211 1111 1 12222222222222234567888999999999887765332
Q ss_pred ccC-----c--cccc----chHHHHHHHHHHHHHHHHhHHh--------------HHHHHHhhhcccchhHHHHHHHHHH
Q psy5190 198 TSN-----V--DSNC----SHLDEAQRNFQTHRENFEKLRN--------------DVVVKLRFLDENRIKVMHKQLLLFH 252 (292)
Q Consensus 198 ~~~-----~--~~~l----~r~etaqr~~q~aK~rFdKLR~--------------DV~vKLdLLdenRvkvm~~QL~~~~ 252 (292)
... . ...+ .|++.++..++.++++|.+-=. -|+.+.+.+++.|+..+...|+.+|
T Consensus 156 ~~~~~~d~~~~~~q~~K~~~k~~k~~~~~~k~~~~Y~~~l~~L~~~~~~y~e~m~~~fe~~Q~~E~eRi~F~K~~l~~~~ 235 (258)
T cd07679 156 EANSKADPALNPEQLKKLQDKVEKCKQDVLKTKEKYEKSLKELDQTTPQYMENMEQVFEQCQQFEEKRLRFFREVLLEVQ 235 (258)
T ss_pred HHhcccCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 211 0 1122 4556677777778877765333 3588999999999999999999999
Q ss_pred HHHH
Q psy5190 253 NAIS 256 (292)
Q Consensus 253 nAl~ 256 (292)
+.+.
T Consensus 236 ~~l~ 239 (258)
T cd07679 236 KHLD 239 (258)
T ss_pred HHcc
Confidence 9874
No 89
>PF10456 BAR_3_WASP_bdg: WASP-binding domain of Sorting nexin protein; InterPro: IPR019497 The C-terminal region of the Sorting nexin group of proteins appears to carry a BAR-like (Bin/amphiphysin/Rvs) domain. This domain is very diverse and the similarities with other BAR domains are few. In the Sorting nexins it is associated with IPR001683 from INTERPRO, and in combination with PX appears to be necessary to bind WASP along with p85 to form a multimeric signalling complex []. ; PDB: 2RAK_A 2RAI_A 3DYU_C 2RAJ_A 3DYT_A.
Probab=94.00 E-value=1.1 Score=41.94 Aligned_cols=151 Identities=13% Similarity=0.221 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHHHHHhh----cCh----hhHHHHhhchhhhhhhhH-hhHHHHHhHHHHHHhHHHhhh--hhhhhHHHHH
Q psy5190 106 IFFLQQTLGEAFADLAQ----KSP----ELQEEFLCNSETQRNLTG-TGEILLNALNLFVSSVNTLCN--KTIEDTLVTV 174 (292)
Q Consensus 106 l~qtq~~lgd~F~~Ls~----kEp----eL~~eF~~naetqr~m~k-~G~~Ll~aL~~f~sdl~Tf~~--KAI~DTllTI 174 (292)
+-+-++.+|.+|..||+ .++ .|..++...|++-+.+.. ..+.=..-+.|+...|.-|.. ..+||...+
T Consensus 75 ~kkE~qkiG~af~~Ls~afe~d~~~~~~~L~~Al~~tg~~y~~Ig~l~~~Qpk~D~~pl~d~L~~Y~GlL~~~pdii~~- 153 (237)
T PF10456_consen 75 FKKEYQKIGQAFQSLSQAFELDQQQASMPLTNALKHTGDTYEEIGDLFAEQPKNDLIPLLDCLKEYRGLLSNFPDIISV- 153 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTS--SSHCHHHHHHHHHHHHHHHHHHHHHTSGGGTHHHHHHHHHHHHHHHHTHHHHHHH-
T ss_pred hHHHHHHHHHHHhHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhhhHhhCccHHHH-
Confidence 34445678888888876 121 166666666665443332 111112233334333333322 266776665
Q ss_pred HHHHHhhHhHHHHHhhHHHhhccccCcccccchHHHHHHHHHHHHHHHHhHHhHHHHHHhhhcccchhHHHHHHHHHHHH
Q psy5190 175 RQYENARVEYDAYRTDLELLLQVTSNVDSNCSHLDEAQRNFQTHRENFEKLRNDVVVKLRFLDENRIKVMHKQLLLFHNA 254 (292)
Q Consensus 175 kkYE~AR~EYdAyrl~leem~~e~~~~~~~l~r~etaqr~~q~aK~rFdKLR~DV~vKLdLLdenRvkvm~~QL~~~~nA 254 (292)
+.+++.+++|...-... .|+. +.....-+.|=+.+=.-|+.-++-+.+.|+.++...+..|...
T Consensus 154 ---------hk~A~~k~ke~~kl~~e-----~K~~--~~~~~~v~~R~d~is~a~lAEm~hfh~~r~~Df~~~m~~yL~~ 217 (237)
T PF10456_consen 154 ---------HKGALQKVKECEKLSDE-----GKMS--QQEAEEVQRRCDVISYAVLAEMNHFHQERVEDFKSMMKTYLQQ 217 (237)
T ss_dssp ---------HHHHHHHCTCHHHHHHT-----TSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------HHHHHHHHHHHHHHHhc-----cCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33555554444211100 0111 2334444555566667789999999999999999999999999
Q ss_pred HHHHHhcCHHHHHHHhhhc
Q psy5190 255 ISAYFSGNEPGLQATLKQF 273 (292)
Q Consensus 255 l~ay~sgn~~~Le~tl~~F 273 (292)
=.+||..-...|++++.+|
T Consensus 218 Qi~Fyq~i~~kLe~a~~~f 236 (237)
T PF10456_consen 218 QIAFYQQIAEKLEQALQQF 236 (237)
T ss_dssp HHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999988
No 90
>cd07605 I-BAR_IMD Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), a dimerization module that binds and bends membranes. Inverse (I)-BAR (or IMD) is a member of the Bin/Amphiphysin/Rvs (BAR) domain family. It is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions in the opposite direction compared to classical BAR and F-BAR domains, which produce membrane invaginations. IMD domains are found in Insulin Receptor tyrosine kinase Substrate p53 (IRSp53), Missing in Metastasis (MIM), and Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-like (BAIAP2L) proteins. These are multi-domain proteins that act as scaffolding proteins and transducers of a variety of signaling pathways that link membrane dynamics and the underlying actin cytoskeleton. Most members contain an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus, exccept for MIM which does not carry an SH3 domain. Some me
Probab=93.87 E-value=5.5 Score=37.01 Aligned_cols=165 Identities=16% Similarity=0.172 Sum_probs=106.9
Q ss_pred HHHHHHHHHHHHHHHHhhc---Ch---hhHHHHhhchhhhhhhhHhhHHHHHhHHHHHHhHHHhhhhhhhhHHHHHHHHH
Q psy5190 105 VIFFLQQTLGEAFADLAQK---SP---ELQEEFLCNSETQRNLTGTGEILLNALNLFVSSVNTLCNKTIEDTLVTVRQYE 178 (292)
Q Consensus 105 ~l~qtq~~lgd~F~~Ls~k---Ep---eL~~eF~~naetqr~m~k~G~~Ll~aL~~f~sdl~Tf~~KAI~DTllTIkkYE 178 (292)
.++++...|.|+|+.||.- +| +++..+..-++.||.++..-+.. ++.|+.++-+=+.+-|++=.-.|...+
T Consensus 38 a~~~a~~~~~dAl~kia~~A~~s~~sk~lG~~L~~i~~~~r~ie~~l~~~---~~~~~~~li~pLe~k~e~d~k~i~~~~ 114 (223)
T cd07605 38 ALSQAAKVFFDALAKIGELASQSRGSQELGEALKQIVDTHKSIEASLEQV---AKAFHGELILPLEKKLELDQKVINKFE 114 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 6888999999999888774 33 68888989999999888765544 344555555556666665555554443
Q ss_pred H-hhHhHHHHHhhHHHhhcc-------cc--CcccccchHHHHHHHHHHHHHHHHhHHhHHHHHHhhhcccchhHHHHHH
Q psy5190 179 N-ARVEYDAYRTDLELLLQV-------TS--NVDSNCSHLDEAQRNFQTHRENFEKLRNDVVVKLRFLDENRIKVMHKQL 248 (292)
Q Consensus 179 ~-AR~EYdAyrl~leem~~e-------~~--~~~~~l~r~etaqr~~q~aK~rFdKLR~DV~vKLdLLdenRvkvm~~QL 248 (292)
. -..||..-|..++....+ .+ +....-.++..+...+..-....+..-.+-+...=+-+--|.-.+...+
T Consensus 115 K~y~~E~K~~~~~l~K~~sel~Kl~KKs~~~~~~k~~~~l~~~~e~v~~k~~ele~~~~~~lr~al~EERrRyc~lv~~~ 194 (223)
T cd07605 115 KDYKKEYKQKREDLDKARSELKKLQKKSQKSGTGKYQEKLDQALEELNDKQKELEAFVSQGLRDALLEERRRYCFLVDKH 194 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 234555555444443322 11 1111223444455555555555666666666666566667777888888
Q ss_pred HHHHHHHHHHHhcCHHHHHHHhhh
Q psy5190 249 LLFHNAISAYFSGNEPGLQATLKQ 272 (292)
Q Consensus 249 ~~~~nAl~ay~sgn~~~Le~tl~~ 272 (292)
..|.+...+||++....|.+.+..
T Consensus 195 c~v~~~e~~~~~~~~~~L~~~l~~ 218 (223)
T cd07605 195 CSVAKHEIAYHAKAMTLLSTRLPL 218 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHH
Confidence 899999999999999999887653
No 91
>cd07676 F-BAR_FBP17 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 17. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Formin Binding Protein 17 (FBP17), also called FormiN Binding Protein 1 (FNBP1), is involved in dynamin-mediated endocytosis. It is recruited to clathrin-coated pits late in the endocytosis process and may play a role in the invagination and scission steps. FBP17 binds in vivo to tankyrase, a protein involved in telomere maintenance and mitogen activated protein kinase (MAPK) signaling. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=92.59 E-value=9.1 Score=35.90 Aligned_cols=135 Identities=11% Similarity=0.147 Sum_probs=79.4
Q ss_pred hhhhhhhhHhh-HHHHHhHHHHHHhHHHhhh-------hhhhhHHHHHHHHHHhhHhHHHHHhhHHHhhccccCc--cc-
Q psy5190 135 SETQRNLTGTG-EILLNALNLFVSSVNTLCN-------KTIEDTLVTVRQYENARVEYDAYRTDLELLLQVTSNV--DS- 203 (292)
Q Consensus 135 aetqr~m~k~G-~~Ll~aL~~f~sdl~Tf~~-------KAI~DTllTIkkYE~AR~EYdAyrl~leem~~e~~~~--~~- 203 (292)
|+.|..+..+- .....+|..++.++....- |+-.+--..++..+.||-.|+..|-+.|......... ..
T Consensus 80 A~~H~~~~~~L~~~v~~~l~~~~~~~k~~rK~~~~~~~k~qk~~~~~~~~lekaKk~Y~~acke~E~A~~~~~ka~~d~~ 159 (253)
T cd07676 80 AGQHEVISENLASQIIVELTRYVQELKQERKSHFHDGRKAQQHIETCWKQLESSKRRFERDCKEADRAQQYFEKMDADIN 159 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 34444444322 3455666666665555444 4434445567888999999999999988766432110 01
Q ss_pred -ccchHHHHHHHHHHHHHHHHhHH----------------------hHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHh
Q psy5190 204 -NCSHLDEAQRNFQTHRENFEKLR----------------------NDVVVKLRFLDENRIKVMHKQLLLFHNAISAYFS 260 (292)
Q Consensus 204 -~l~r~etaqr~~q~aK~rFdKLR----------------------~DV~vKLdLLdenRvkvm~~QL~~~~nAl~ay~s 260 (292)
+-..+++++.+.+....-.++-| -.|+..++=|++.|+..|..-|..|......+..
T Consensus 160 ~sk~~~eK~k~~~~~~~~~~e~aKn~Y~~~l~~~N~~q~~~Y~e~mp~vfd~lQ~lee~Ri~~l~e~l~~~~~~e~~~~~ 239 (253)
T cd07676 160 VTKADVEKARQQAQIRHQMAEDSKAEYSSYLQKFNKEQHEHYYTHIPNIFQKIQEMEERRIGRVGESMKTYAEVDRQVIP 239 (253)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 11233444444333333333333 3467777888888888888888888777776665
Q ss_pred cCHHHHHHH
Q psy5190 261 GNEPGLQAT 269 (292)
Q Consensus 261 gn~~~Le~t 269 (292)
.-..-|+.+
T Consensus 240 ~i~~cl~~i 248 (253)
T cd07676 240 IIGKCLDGI 248 (253)
T ss_pred HHHHHHHHH
Confidence 555555444
No 92
>cd07637 BAR_ACAP3 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP3 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3), also called centaurin beta-5, is presumed to be an Arf GTPase activating protein (GAP) based on its similarity to the Arf6-specific GAPs ACAP1 and ACAP2. The specific function of ACAP3 is still unknown. ACAP3 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=92.10 E-value=1.5 Score=39.94 Aligned_cols=132 Identities=16% Similarity=0.258 Sum_probs=84.2
Q ss_pred hHHHHhhchhhhhhhhHhhHHHHHhHHHHHHhHHHhhhhhhhhHHH--HHHHHHHhhHhHHHHHhhHHHhhccccCcccc
Q psy5190 127 LQEEFLCNSETQRNLTGTGEILLNALNLFVSSVNTLCNKTIEDTLV--TVRQYENARVEYDAYRTDLELLLQVTSNVDSN 204 (292)
Q Consensus 127 L~~eF~~naetqr~m~k~G~~Ll~aL~~f~sdl~Tf~~KAI~DTll--TIkkYE~AR~EYdAyrl~leem~~e~~~~~~~ 204 (292)
|-.+...-.+.-+.|..-|..+..+.+-|.+.|+.|....|+|..+ +++++-++=-|--.|+..+-. +.......|
T Consensus 14 le~~l~kl~K~~~~~~d~g~~~~~a~~~F~~~l~d~~~~~~gd~~i~~~L~kF~~~l~ei~~~~~~l~~--q~e~~l~~p 91 (200)
T cd07637 14 IEAKLDKLVKLCSGMIEAGKAYATTNKLFVSGIRDLSQQCKKDEMISECLDKFGDSLQEMVNYHMILFD--QAQRSVRQQ 91 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
Confidence 3334444455557777789999999999999999999999999975 356666665555555544321 112222347
Q ss_pred cchHHHH-HHHHHHHHHHHHhHHhHHHHHHhhhc---ccc---h----hHHHHHHHHHHHHHHHHHh
Q psy5190 205 CSHLDEA-QRNFQTHRENFEKLRNDVVVKLRFLD---ENR---I----KVMHKQLLLFHNAISAYFS 260 (292)
Q Consensus 205 l~r~eta-qr~~q~aK~rFdKLR~DV~vKLdLLd---enR---v----kvm~~QL~~~~nAl~ay~s 260 (292)
|..|.+. .+.+.++|.+|||-..+-...+.-.. -++ + ..+...-..|+.+...|..
T Consensus 92 L~~F~k~dL~~~KE~rK~Fdk~se~yd~al~k~~~~k~kk~~~l~Ea~~~L~~~Rk~f~~asLdyv~ 158 (200)
T cd07637 92 LHSFVKEDVRKFKETKKQFDKVREDLEIALVKNAQAPRHKPHEVEEATSTLTITRKCFRHLALDYVL 158 (200)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888876 57889999999998776533332221 111 1 2334444556666666654
No 93
>cd07589 BAR_DNMBP The Bin/Amphiphysin/Rvs (BAR) domain of Dynamin Binding Protein. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. DyNamin Binding Protein (DNMBP), also called Tuba, is a Cdc42-specific Guanine nucleotide Exchange Factor (GEF) that binds dynamin and various actin regulatory proteins. It serves as a link between dynamin function, Rho GTPase signaling, and actin dynamics. It plays an important role in regulating cell junction configuration. DNMBP contains BAR and SH3 domains as well as a Dbl Homology domain (DH domain), which harbors GEF activity. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of DNMBP may be involved in binding to membranes. The gene encoding DNMBP is a candidate gene for late onset Alzheimer's disease.
Probab=92.08 E-value=8.6 Score=34.46 Aligned_cols=87 Identities=9% Similarity=0.158 Sum_probs=75.7
Q ss_pred hhhhHHHHHHHHHHhhHhHHHHHhhHHHhhccccCcccccchHHHHHHHHHHHHHHHHhHHhHHHHHHhhhcccchhHHH
Q psy5190 166 TIEDTLVTVRQYENARVEYDAYRTDLELLLQVTSNVDSNCSHLDEAQRNFQTHRENFEKLRNDVVVKLRFLDENRIKVMH 245 (292)
Q Consensus 166 AI~DTllTIkkYE~AR~EYdAyrl~leem~~e~~~~~~~l~r~etaqr~~q~aK~rFdKLR~DV~vKLdLLdenRvkvm~ 245 (292)
-+++...+|++=++.+++|+.|+..++. ...+...+..+++.|+.|=.....=|=.|-+.+...|.
T Consensus 100 ~~~~~~k~I~KR~~KllDYdr~~~~~~k--------------~~k~e~~l~~a~~~y~~lN~~L~~ELP~l~~~~~~~l~ 165 (195)
T cd07589 100 LFSGPQKLIQKRYDKLLDYERYKEKKER--------------GGKVDEELEEAANQYEALNAQLKEELPKFNQLTAQLLE 165 (195)
T ss_pred HHHhHHHHHHHHhhhhccHHHHHHHHHh--------------hcchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 7888999999999999999999998766 23477889999999999999998888889999999999
Q ss_pred HHHHHHHHHHHHHHhcCHHHH
Q psy5190 246 KQLLLFHNAISAYFSGNEPGL 266 (292)
Q Consensus 246 ~QL~~~~nAl~ay~sgn~~~L 266 (292)
.-|..|...=..||....+.+
T Consensus 166 ~~~~s~~~~Q~~~~~~~~~~~ 186 (195)
T cd07589 166 TCLKSFVELQRDLYDTLLKRA 186 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 999999888888888766654
No 94
>cd07645 I-BAR_IMD_BAIAP2L1 Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 1. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. BAIAP2L1 (Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 1) is also known as IRTKS (Insulin Receptor Tyrosine Kinase Substrate). It is widely expressed, serves as a substrate for the insulin receptor, and binds the small GTPase Rac. It plays a role in regulating the actin cytoskeleton and colocalizes with F-actin, cortactin, VASP, and vinculin. BAIAP2L1 expression leads to the formation of short actin bundles, distinct from filopodia-like protrusions induced by the expression of the related protein IRSp53. It contains an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus. The IMD domain of
Probab=91.55 E-value=12 Score=35.13 Aligned_cols=159 Identities=16% Similarity=0.226 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHHHHHHhh---cC---hhhHHHHhhchhhhhhhhHhhHHHHHhHHHHHHhHHHhhhhhhh-hHH---HHH
Q psy5190 105 VIFFLQQTLGEAFADLAQ---KS---PELQEEFLCNSETQRNLTGTGEILLNALNLFVSSVNTLCNKTIE-DTL---VTV 174 (292)
Q Consensus 105 ~l~qtq~~lgd~F~~Ls~---kE---peL~~eF~~naetqr~m~k~G~~Ll~aL~~f~sdl~Tf~~KAI~-DTl---lTI 174 (292)
.++.+.++|.|+++.||. .+ .+|+..+..-++.||-+..+-+. -|+.|+.||-+=+.+.++ |+. .|.
T Consensus 38 a~~~A~~~y~dal~Kige~A~~s~~SkeLG~~L~qi~ev~r~i~~~le~---~lK~Fh~Ell~~LE~k~elD~kyi~a~~ 114 (226)
T cd07645 38 AMVLAGKAYYDGVAKIGEIAAVSPVSKELGHVLMEISDVHKKLNDSLEE---NFKKFHREIIAELERKTDLDVKYMTATL 114 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 688999999999998875 23 35999999999999988765544 477888888888887777 765 566
Q ss_pred HHHHHhhHhHHHHH-------hhHHHhhccccCccccc-chHHH--HHHHHHHHHHHHHhHHhHHHHHHhhhcccc-hhH
Q psy5190 175 RQYENARVEYDAYR-------TDLELLLQVTSNVDSNC-SHLDE--AQRNFQTHRENFEKLRNDVVVKLRFLDENR-IKV 243 (292)
Q Consensus 175 kkYE~AR~EYdAyr-------l~leem~~e~~~~~~~l-~r~et--aqr~~q~aK~rFdKLR~DV~vKLdLLdenR-vkv 243 (292)
|+|+. ||+.=+ .+|+.+.-..++...+. |--.. -..-+..-+...++.-.|-+ |=-|++|.| .-.
T Consensus 115 Kkyq~---E~k~k~dsLeK~~seLKK~RRKsqg~kn~~kye~Ke~~~~e~~~~~q~el~~f~~~~~-k~AL~EErRRycF 190 (226)
T cd07645 115 KRYQT---EHKNKLDSLEKSQADLKKIRRKSQGRRNASKYEHKENEYLETVTSRQSDIQKFIADGC-REALLEEKRRFCF 190 (226)
T ss_pred HHHHH---HHHHHHHHHHHHHHHHHHHHhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 77764 555444 33444432222211111 10110 01111112222223223222 223344433 333
Q ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHh
Q psy5190 244 MHKQLLLFHNAISAYFSGNEPGLQATL 270 (292)
Q Consensus 244 m~~QL~~~~nAl~ay~sgn~~~Le~tl 270 (292)
+.--=..+.+.+++||+++...|.+-+
T Consensus 191 lvdkhC~~~~~~~~yh~k~~~lL~~kl 217 (226)
T cd07645 191 LVDKHCSFSNHIHYFHQQAAELLNSKL 217 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 333334677888999999999988753
No 95
>cd07668 BAR_SNX9 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 9. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX9, also known as SH3PX1, is a cytosolic protein that interacts with proteins associated with clathrin-coated pits such as Cdc-42-associated tyrosine kinase 2 (ACK2). It binds class I polyproline sequences found in dynamin 1/2 and the WASP/N-WASP actin regulators. SNX9 is localized to plasma membrane endocytic sites and acts primarily in clathrin-mediated endocytosi
Probab=91.17 E-value=10 Score=35.35 Aligned_cols=150 Identities=13% Similarity=0.179 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHHHhhc----Ch----hhHHHHhhchhhhhhhhH-hhHHHHHhHHHHHHhHHHhhh--hhhhhHHHHHHH
Q psy5190 108 FLQQTLGEAFADLAQK----SP----ELQEEFLCNSETQRNLTG-TGEILLNALNLFVSSVNTLCN--KTIEDTLVTVRQ 176 (292)
Q Consensus 108 qtq~~lgd~F~~Ls~k----Ep----eL~~eF~~naetqr~m~k-~G~~Ll~aL~~f~sdl~Tf~~--KAI~DTllTIkk 176 (292)
+-++.+|++|..||+- ++ .|.+++..-|++-..+.. .++.=..-+.|+..-|+-|.. --+||+...
T Consensus 48 kEyqkiG~af~~LsqaFe~d~~~~~~~L~~Ai~~tg~~y~~IG~~faeQpk~Dl~pl~d~L~~Y~G~L~~fPDIi~v--- 124 (210)
T cd07668 48 KEYQKIGKALQSLATVFSTSGYQGETDLNDAITEAGKTYEEIASLVAEQPKKDLHFLMETNHEYKGFLGCFPDIIGA--- 124 (210)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCccccCccHHHH---
Confidence 3446788888888871 11 166666665555433322 334444556666665555544 237777664
Q ss_pred HHHhhHhHHHHHhhHHHhhccccCcccccchHHHHHHHHHHHHHHHHhHHhHHHHHHhhhcccchhHHHHHHHHHHHHHH
Q psy5190 177 YENARVEYDAYRTDLELLLQVTSNVDSNCSHLDEAQRNFQTHRENFEKLRNDVVVKLRFLDENRIKVMHKQLLLFHNAIS 256 (292)
Q Consensus 177 YE~AR~EYdAyrl~leem~~e~~~~~~~l~r~etaqr~~q~aK~rFdKLR~DV~vKLdLLdenRvkvm~~QL~~~~nAl~ 256 (292)
+.+++.+++|...-..+ .|+. +.....-+.|=+-+--.|+.=|.-+.++|+.++..++..|.+.=.
T Consensus 125 -------~KgA~~KvkE~~k~~~e-----gkm~--~~~~~~v~~R~dviSya~~AEm~HFh~~r~~d~k~~M~~yL~eQi 190 (210)
T cd07668 125 -------HKGAIEKVKESDKLVAT-----SKIT--LQDKQNMVKRVSTMSYALQAEMNHFHSNRIYDYNSVIRLYLEQQV 190 (210)
T ss_pred -------HHHHHHHHHHHHHHhhh-----ccch--hHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777777776422211 1111 111222222223333446677788889999999999999999999
Q ss_pred HHHhcCHHHHHHHhhhcc
Q psy5190 257 AYFSGNEPGLQATLKQFN 274 (292)
Q Consensus 257 ay~sgn~~~Le~tl~~F~ 274 (292)
+||..-.+.|++++.+|.
T Consensus 191 ~Fyq~v~~kl~~~l~~y~ 208 (210)
T cd07668 191 QFYETIAEKLRQALSRFP 208 (210)
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 999999999999999885
No 96
>cd07610 FCH_F-BAR The Extended FES-CIP4 Homology (FCH) or F-BAR (FCH and Bin/Amphiphysin/Rvs) domain, a dimerization module that binds and bends membranes. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. F-BAR domain containing proteins, also known as Pombe Cdc15 homology (PCH) family proteins, include Fes and Fer tyrosine kinases, PACSINs/Syndapins, FCHO, PSTPIP, CIP4-like proteins and srGAPs. Many members also contain an SH3 domain and play roles in endocytosis. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. These tubules have diameters larger than those observed with N-BARs. The F-BAR domains of some members such as NOSTRIN and Rgd1 are important for the subcellular localization of the protein.
Probab=90.98 E-value=9.4 Score=32.77 Aligned_cols=156 Identities=13% Similarity=0.137 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHHHHHHhhcCh--------hhHHHHhhchhhhhhhhHhhHHHHHhHHHHHHhHHHhhhhhhhh-HHHHHH
Q psy5190 105 VIFFLQQTLGEAFADLAQKSP--------ELQEEFLCNSETQRNLTGTGEILLNALNLFVSSVNTLCNKTIED-TLVTVR 175 (292)
Q Consensus 105 ~l~qtq~~lgd~F~~Ls~kEp--------eL~~eF~~naetqr~m~k~G~~Ll~aL~~f~sdl~Tf~~KAI~D-TllTIk 175 (292)
+-+.+.+.|+..+..|+.+-. .+...|...-.....++.....+...|.-.+.+.-...-..... .+..+.
T Consensus 25 eRa~iE~eYak~L~kLak~~~~~~~~~~~t~~~~w~~~~~e~~~~a~~h~~~a~~l~~~i~~~~~~~~~~~~~~rk~~~~ 104 (191)
T cd07610 25 KRAAIEEEYAKNLQKLAKKFSKKPESGKTSLGTSWNSLREETESAATVHEELSEKLSQLIREPLEKVKEDKEQARKKELA 104 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556667777777765321 23334444444444555555555555544444443333223233 444556
Q ss_pred HHHHhhHhHHHHHhhHHHhhccccCcccccchHHHHHHHHHHHHHHHHhHHhHHHHHHhhhcccchhHHHHHHHHHHHHH
Q psy5190 176 QYENARVEYDAYRTDLELLLQVTSNVDSNCSHLDEAQRNFQTHRENFEKLRNDVVVKLRFLDENRIKVMHKQLLLFHNAI 255 (292)
Q Consensus 176 kYE~AR~EYdAyrl~leem~~e~~~~~~~l~r~etaqr~~q~aK~rFdKLR~DV~vKLdLLdenRvkvm~~QL~~~~nAl 255 (292)
..+++.-+|...+..++. + . -.............+.+|..=...++.+++-+++.|+..|..-|..|.+.+
T Consensus 105 ~~~~~~k~~~~~~~~~~k-k-~-------~~~y~~~~~~~~~~~~~~~~~~~~~~~~~q~~~e~r~~~~~~~l~~~~~~~ 175 (191)
T cd07610 105 EGEKLKKKLQELWAKLAK-K-A-------DEEYREQVEKLNPAQSEYEEEKLNKIQAEQEREEERLEILKDNLKNYINAI 175 (191)
T ss_pred HHHHHHHHHHHHHHHHHH-h-h-------HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666677777777766655 0 0 112233334455556666665556677788888999999999999999999
Q ss_pred HHHHhcCHHHHHHH
Q psy5190 256 SAYFSGNEPGLQAT 269 (292)
Q Consensus 256 ~ay~sgn~~~Le~t 269 (292)
..........++.+
T Consensus 176 ~~~~~~~~~~~e~~ 189 (191)
T cd07610 176 KEIPQKIQQELEQS 189 (191)
T ss_pred HhhhHHHhhhhhcc
Confidence 98888776665543
No 97
>KOG2273|consensus
Probab=90.83 E-value=16 Score=36.81 Aligned_cols=164 Identities=15% Similarity=0.190 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHHHHHHhhcCh---hhHHHHhhchhhhhhhhHhhH---------HHHHhHHHHHHhHHHhhhhhhhhHHH
Q psy5190 105 VIFFLQQTLGEAFADLAQKSP---ELQEEFLCNSETQRNLTGTGE---------ILLNALNLFVSSVNTLCNKTIEDTLV 172 (292)
Q Consensus 105 ~l~qtq~~lgd~F~~Ls~kEp---eL~~eF~~naetqr~m~k~G~---------~Ll~aL~~f~sdl~Tf~~KAI~DTll 172 (292)
.+......||.+|..|+.-+- ++...+...+..+..+++-.+ .+..+++.|++.++.+-. ++..-..
T Consensus 306 ~l~~~~~~~g~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~l~~~i~~~~~~k~-~~~~r~~ 384 (503)
T KOG2273|consen 306 ELASNLAELGKALAQLSALEGETDELSEALSGLAKVIESLSKLLEKLTAEKDSKKLAEQLREYIRYLESVKS-LFEQRSK 384 (503)
T ss_pred HHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 566667789999999998665 677777777777665554433 334555555554222211 1111111
Q ss_pred HHHHHHHhhHhHHHHHhhHHHhhccccCcccccch-------HHHHHHHHHHHH-----HHHH--hHHhHHHHHHhhhcc
Q psy5190 173 TVRQYENARVEYDAYRTDLELLLQVTSNVDSNCSH-------LDEAQRNFQTHR-----ENFE--KLRNDVVVKLRFLDE 238 (292)
Q Consensus 173 TIkkYE~AR~EYdAyrl~leem~~e~~~~~~~l~r-------~etaqr~~q~aK-----~rFd--KLR~DV~vKLdLLde 238 (292)
-...-..++.++..-...+..+........ ...+ ++.-+..+.... .+|+ .+-.++-.-++.++.
T Consensus 385 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~-~~~k~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~e~~~f~~ 463 (503)
T KOG2273|consen 385 ALQKLQEAQRELSSKKEQLSKLKKKNRSSF-GFDKIDLAEKEIEKLEEKVNELEELLALKELELDEISERIRAELERFEE 463 (503)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhhhhhh-ccchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 122224444444444433333322221100 1111 112223333333 4454 666777777999999
Q ss_pred cchhHHHHHHHHHHHHHHHHHhcCHHHHHHHh
Q psy5190 239 NRIKVMHKQLLLFHNAISAYFSGNEPGLQATL 270 (292)
Q Consensus 239 nRvkvm~~QL~~~~nAl~ay~sgn~~~Le~tl 270 (292)
.|.++|...+..|......|+.+|.+.=+...
T Consensus 464 ~~~~d~~~~~~~~~d~~i~~~~~~l~~W~~~~ 495 (503)
T KOG2273|consen 464 SRRQDFKESLKKYADLHVEYAEQILKAWEKFL 495 (503)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999977666543
No 98
>cd07607 BAR_SH3P_plant The Bin/Amphiphysin/Rvs (BAR) domain of the plant SH3 domain-containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of proteins with similarity to Arabidopsis thaliana SH3 domain-containing proteins 1 (SH3P1) and 2 (SH3P2). SH3P1 is involved in the trafficking of clathrin-coated vesicles. It is localized at the plasma membrane and is associated with vesicles of the trans-Golgi network. Yeast complementation studies reveal that SH3P1 has similar functions to the Saccharomyces cerevisiae Rvs167p, which is involved in endocytosis and actin cytoskeletal arrangement. Members of this group contain an N-terminal BAR domain and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be i
Probab=90.57 E-value=14 Score=34.14 Aligned_cols=165 Identities=16% Similarity=0.216 Sum_probs=125.5
Q ss_pred HHHHHHHHHHHHHHHHhhcChh----hHHHHhhchhhhhhhhHhhHHHHHhHHHHHHh-HHHhhhh-hhhhHHHHHHHHH
Q psy5190 105 VIFFLQQTLGEAFADLAQKSPE----LQEEFLCNSETQRNLTGTGEILLNALNLFVSS-VNTLCNK-TIEDTLVTVRQYE 178 (292)
Q Consensus 105 ~l~qtq~~lgd~F~~Ls~kEpe----L~~eF~~naetqr~m~k~G~~Ll~aL~~f~sd-l~Tf~~K-AI~DTllTIkkYE 178 (292)
.-+.+-..|++-.|.-|.+.|. |+.+-..||.+++.|++-.+.|+..|.-=+.+ |.+.+.. -.+|.+.-..+|.
T Consensus 33 Kq~Ei~~KlaeDc~KYG~en~~~~~~LsrAa~~yG~a~~~mEkEre~l~r~l~~QV~ePLRaMv~GaPLEDARhL~qrYd 112 (209)
T cd07607 33 KQLEIGTKLAEDCKKYGSENPSVNTALSRASLHYGSARNQMEKERENLHRVLSEQVAEPLRAMVYGAPLEDARHLKQRYD 112 (209)
T ss_pred hHHHHHHHHHHHHHHhccCCCCcccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence 4455667788888888888664 88899999999999999988888777654433 4444443 4799999999999
Q ss_pred HhhHhHHHHHhhHHHhhcccc---CcccccchHHHHHHHHHHHHHHHHhHHhHHHHHHhhhcccchhHHHHHHHHHHHHH
Q psy5190 179 NARVEYDAYRTDLELLLQVTS---NVDSNCSHLDEAQRNFQTHRENFEKLRNDVVVKLRFLDENRIKVMHKQLLLFHNAI 255 (292)
Q Consensus 179 ~AR~EYdAyrl~leem~~e~~---~~~~~l~r~etaqr~~q~aK~rFdKLR~DV~vKLdLLdenRvkvm~~QL~~~~nAl 255 (292)
.-|-|-.+--.++-.-..-.+ +......|++.+....++-|..-.-|-....-.|--.++..-++--+-|.....|=
T Consensus 113 RmRQeaE~qa~eV~RRq~k~res~~~~e~~~KL~~AE~Kl~elks~M~~LGKEA~aAm~aVEaQQQrlTlqRL~amVeaE 192 (209)
T cd07607 113 RLRQEVEAQAAEVARRRSKDKESGGNPDNAAKLQSAESKLDELKSSMNTLGKEATSAMLAVEDQQQQVTLQRLLAMVEAE 192 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998887666533222111 11225568888888888888888888888888888888888888888888899999
Q ss_pred HHHHhcCHHHHHHH
Q psy5190 256 SAYFSGNEPGLQAT 269 (292)
Q Consensus 256 ~ay~sgn~~~Le~t 269 (292)
-+||..-...|+..
T Consensus 193 r~Yhqrv~~ILd~l 206 (209)
T cd07607 193 RAYHQRAADILDKL 206 (209)
T ss_pred HHHHHHHHHHHHHh
Confidence 99998777777653
No 99
>cd07669 BAR_SNX33 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 33. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX33 interacts with Wiskott-Aldrich syndrome protein (WASP) and plays a role in the maintenance of cell shape and cell cycle progression. It modulates the shedding and endocytosis of cellular prion protein (PrP(c)) and amyloid precursor protein (APP). BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=89.82 E-value=17 Score=33.85 Aligned_cols=149 Identities=13% Similarity=0.178 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHHHhhc----Ch----hhHHHHhhchhhhhhhhH-hhHHHHHhHHHHHHhHHHhhh--hhhhhHHHHHHH
Q psy5190 108 FLQQTLGEAFADLAQK----SP----ELQEEFLCNSETQRNLTG-TGEILLNALNLFVSSVNTLCN--KTIEDTLVTVRQ 176 (292)
Q Consensus 108 qtq~~lgd~F~~Ls~k----Ep----eL~~eF~~naetqr~m~k-~G~~Ll~aL~~f~sdl~Tf~~--KAI~DTllTIkk 176 (292)
+-++.+|.+|..||+- ++ .|..++..-|++-..+.. .++.=..-+-|+..-|+-|.. --+||+...
T Consensus 48 kEyqkiG~af~~LsqaFe~d~~~~s~~L~~Av~~tG~~y~~IG~~faeQpk~D~~pl~d~L~~Y~GlL~~fPDii~v--- 124 (207)
T cd07669 48 KEFQKLGNAFQAISHSFQLDPPYSSEALNNAISHTGRTYEAVGEMFAEQPKNDLFQMLDTLSLYQGLLSNFPDIIHL--- 124 (207)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHhCcccCCccHHHH---
Confidence 3446788888888861 11 155555555544333322 233333445555555554443 236666653
Q ss_pred HHHhhHhHHHHHhhHHHhhccccCcccccchHHHHHHHHHHHHHHHHhHHhHHHHHHhhhcccchhHHHHHHHHHHHHHH
Q psy5190 177 YENARVEYDAYRTDLELLLQVTSNVDSNCSHLDEAQRNFQTHRENFEKLRNDVVVKLRFLDENRIKVMHKQLLLFHNAIS 256 (292)
Q Consensus 177 YE~AR~EYdAyrl~leem~~e~~~~~~~l~r~etaqr~~q~aK~rFdKLR~DV~vKLdLLdenRvkvm~~QL~~~~nAl~ 256 (292)
+.+++.+++|..--..+ .|+. +.....-+.|=+=+--.+..=|.-+-++|+.++..++..|...=.
T Consensus 125 -------~K~A~~KvkE~~k~~~e-----~Km~--~~~~~~v~~R~~~isya~~AEm~HFh~~r~~d~k~~M~~yL~eQi 190 (207)
T cd07669 125 -------QKGAFAKVKESQRMSDE-----GRMD--QDEADGIRKRCRVVGFALQAEMNHFHQRRELDFKQMMQHYLRQQI 190 (207)
T ss_pred -------HHHHHHHHHHHHHhhHH-----hhhh--hhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777777775411100 0000 111122222333333346677888899999999999999999999
Q ss_pred HHHhcCHHHHHHHhhhc
Q psy5190 257 AYFSGNEPGLQATLKQF 273 (292)
Q Consensus 257 ay~sgn~~~Le~tl~~F 273 (292)
+||..-++.|+++|.+|
T Consensus 191 ~Fyq~v~~kle~al~~~ 207 (207)
T cd07669 191 IFYQRVSQQLEKTLRMY 207 (207)
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 99999999999998875
No 100
>cd07686 F-BAR_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fer (Fes related) tyrosine kinase. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fer (Fes related) is a cytoplasmic (or nonreceptor) tyrosine kinase expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-cell interactions mediated by adherens junctions and focal adhesions. Fer kinase also regulates cell cycle progression in malignant cells. It contains an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membran
Probab=89.58 E-value=18 Score=33.90 Aligned_cols=112 Identities=11% Similarity=0.142 Sum_probs=67.8
Q ss_pred HHhhhhhhhhHH-HHHHHHHHhhHhHHHHHhhHHHhhccccCcccccchHHHHHHHHHHHHHHHHhHHhHHHHHHhhhcc
Q psy5190 160 NTLCNKTIEDTL-VTVRQYENARVEYDAYRTDLELLLQVTSNVDSNCSHLDEAQRNFQTHRENFEKLRNDVVVKLRFLDE 238 (292)
Q Consensus 160 ~Tf~~KAI~DTl-lTIkkYE~AR~EYdAyrl~leem~~e~~~~~~~l~r~etaqr~~q~aK~rFdKLR~DV~vKLdLLde 238 (292)
..+-.+...+-. .|+...+.+|-.|+..|-.++.....-........+.+++++.++.+-.+....|++=+.+|.--..
T Consensus 111 ~~~~~kl~~e~~~~~~~~l~K~K~~Y~~~~~~~e~ar~K~~~a~~~gk~~~Ka~~k~~~~~~km~~~kN~Yll~i~~aN~ 190 (234)
T cd07686 111 IGVHQQIEAEMYKVTKTELEKLKCSYRQLTKEVNSAKEKYKDAVAKGKETEKARERYDKATMKLHMLHNQYVLAVKGAQL 190 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 333343334443 4778889999999999999988764443211122356789999999999999999998888754433
Q ss_pred cchhHHHHHHHHHHHHHHHHHhcCHHHHHHHhh
Q psy5190 239 NRIKVMHKQLLLFHNAISAYFSGNEPGLQATLK 271 (292)
Q Consensus 239 nRvkvm~~QL~~~~nAl~ay~sgn~~~Le~tl~ 271 (292)
.+=+-...-|-.+.+.+-.+.+.=...|..++.
T Consensus 191 ~k~~Yy~~~lP~lLd~lQ~l~E~rv~~ln~i~~ 223 (234)
T cd07686 191 HQHQYYDFTLPLLLDSLQKMQEEMIKALKGILD 223 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 332222333333444444444444444444443
No 101
>cd07670 BAR_SNX18 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 18. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX18 is localized to peripheral endosomal structures, and acts in a trafficking pathway that is clathrin-independent but relies on AP-1 and PACS1. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=88.57 E-value=21 Score=33.23 Aligned_cols=150 Identities=11% Similarity=0.172 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHHHhh----cChh----hHHHHhhchhhhhhhhH-hhHHHHHhHHHHHHhHHHhhh--hhhhhHHHHHH
Q psy5190 107 FFLQQTLGEAFADLAQ----KSPE----LQEEFLCNSETQRNLTG-TGEILLNALNLFVSSVNTLCN--KTIEDTLVTVR 175 (292)
Q Consensus 107 ~qtq~~lgd~F~~Ls~----kEpe----L~~eF~~naetqr~m~k-~G~~Ll~aL~~f~sdl~Tf~~--KAI~DTllTIk 175 (292)
-+-++.+|++|..||+ .++. |..++..-|++-..+.. .++.=..-+-|+..-|+-|.. --+||+...
T Consensus 47 KkEyqkiG~af~~LsqaF~~d~~~~s~~L~~Av~~tg~~y~~IG~~faeQpk~Dl~Pl~d~L~~Y~G~L~~fPDii~v-- 124 (207)
T cd07670 47 KKEYQKVGQSFKGLSQAFELDQQAFSAGLNQAIAFTGEAYEAIGELFAEQPRQDLDPVMDLLALYQGHLANFPDIIHV-- 124 (207)
T ss_pred cHHHHHHHHHHHHHHHHHccCCcccchHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCccccCCchHHH--
Confidence 3445678899998887 2222 55555555544322221 334444556666666665544 237777664
Q ss_pred HHHHhhHhHHHHHhhHHHhhccccCcccccchHHHHHHHHHHHHHHHHhHHhHHHHHHhhhcccchhHHHHHHHHHHHHH
Q psy5190 176 QYENARVEYDAYRTDLELLLQVTSNVDSNCSHLDEAQRNFQTHRENFEKLRNDVVVKLRFLDENRIKVMHKQLLLFHNAI 255 (292)
Q Consensus 176 kYE~AR~EYdAyrl~leem~~e~~~~~~~l~r~etaqr~~q~aK~rFdKLR~DV~vKLdLLdenRvkvm~~QL~~~~nAl 255 (292)
+.++.-+++|-..-..+ .|++ ++....-+.|=+-+-=.++.=|.-+.++|+.++..++..|...=
T Consensus 125 --------~KgA~~KvKE~~k~~~e-----gkm~--~~~~~~v~~R~dviSya~~AEm~HFh~~r~~d~k~~M~~yL~~Q 189 (207)
T cd07670 125 --------QKGALTKVKESKKHVEE-----GKME--LQKADGIQDRCNIISFATLAEIHHFHKIRVRDFKSQMQHFLQQQ 189 (207)
T ss_pred --------hHHHHHHHHHHHHHHHh-----hccc--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 44555555554311100 0000 00111111122222223456677788999999999999999999
Q ss_pred HHHHhcCHHHHHHHhhhc
Q psy5190 256 SAYFSGNEPGLQATLKQF 273 (292)
Q Consensus 256 ~ay~sgn~~~Le~tl~~F 273 (292)
.+||..-...|++++.+|
T Consensus 190 I~Fyq~v~~kl~~~l~~y 207 (207)
T cd07670 190 IRFFQKVTQKLEEALQKY 207 (207)
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 999999999999998765
No 102
>cd07661 BAR_ICA69 The Bin/Amphiphysin/Rvs (BAR) domain of Islet Cell Autoantigen 69-kDa. The BAR domain of Arfaptin-like proteins, also called the Arfaptin domain, is a dimerization and lipid binding module that can detect and drive membrane curvature. Islet cell autoantigen 69-kDa (ICA69) is a diabetes-associated autoantigen that is highly expressed in brain and beta cells. It is involved in membrane trafficking at the Golgi complex in neurosecretory cells. It is coexpressed with Protein Interacting with C Kinase 1 (PICK1), also a the BAR domain containing protein, in many tissues at different developmental stages. In neurons, ICA69 colocalizes with PICK1 in cell bodies and dendrites but is absent in synapses where PICK1 is enriched. ICA69 contains an N-terminal BAR domain and a conserved C-terminal domain of unknown function. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. ICA69 associate
Probab=87.82 E-value=1.5 Score=40.45 Aligned_cols=147 Identities=14% Similarity=0.175 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHHhhcChhhHHHHhhchh-----hhhhhhHhhHHHHHhHHHHHHh---HHHhhhhhhhhHHHHHHHHHH
Q psy5190 108 FLQQTLGEAFADLAQKSPELQEEFLCNSE-----TQRNLTGTGEILLNALNLFVSS---VNTLCNKTIEDTLVTVRQYEN 179 (292)
Q Consensus 108 qtq~~lgd~F~~Ls~kEpeL~~eF~~nae-----tqr~m~k~G~~Ll~aL~~f~sd---l~Tf~~KAI~DTllTIkkYE~ 179 (292)
+..+.|+..|+.|++.|++|+..|...|. +.++|...|..|...=.-.+.- |+.|.+.. +|.- =|.++|
T Consensus 23 k~i~~yq~~l~~lsq~e~~LG~fl~e~~~~d~t~ag~~m~~t~KaL~~sg~qrl~~r~pl~~f~~~v--~Tf~-~rai~D 99 (204)
T cd07661 23 KIIDNYQERLCILSQEENVLGKFLKEQGKIDKTTAGKMMAATGKALSFSSQQRLALRVPLLRLYQEV--ETFR-ERAIAD 99 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhhccHHHHHHHHHHHhHHHHHHHHhhHHHHHHHH--HHHH-HHHHHH
Confidence 34578999999999999999998888864 3488888998888766665555 77776531 1221 124444
Q ss_pred hhH---hHHHHHhhH----HHhhccccCcccccchHHHHHHHHHHHHHHHHhHHhHHHHHHhhhcccchhHHHH-HHHHH
Q psy5190 180 ARV---EYDAYRTDL----ELLLQVTSNVDSNCSHLDEAQRNFQTHRENFEKLRNDVVVKLRFLDENRIKVMHK-QLLLF 251 (292)
Q Consensus 180 AR~---EYdAyrl~l----eem~~e~~~~~~~l~r~etaqr~~q~aK~rFdKLR~DV~vKLdLLdenRvkvm~~-QL~~~ 251 (292)
.-. -|...|.++ -+|.+...+.. ++.......++.+...|-.-|. --.||+.=-.-+|..+.. -...|
T Consensus 100 tl~Ti~~~E~aR~EY~a~~~~mk~~s~eld---P~~~~~l~kfr~aQ~qvr~~K~-kfdkLk~Dv~qKvdlL~asR~n~l 175 (204)
T cd07661 100 TLQTIQRMEKCRTEYRAALLWMKSVSQELD---PDTYKQLEKFRKAQAQVRSAKE-RFDKLKMDVCQKVDLLGASRCNLL 175 (204)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHhhhcC---CccchhHHHHHHHHHHHHHHHH-HHHHHhHHHHHHHHHHHHHHHHHH
Confidence 321 233333332 33333333222 3333345556666666544432 344555444455555543 35567
Q ss_pred HHHHHHHHhc
Q psy5190 252 HNAISAYFSG 261 (292)
Q Consensus 252 ~nAl~ay~sg 261 (292)
+..+..|+.-
T Consensus 176 s~~L~~yqna 185 (204)
T cd07661 176 SHALVTYQNT 185 (204)
T ss_pred HHHHHHHHHH
Confidence 8888888754
No 103
>cd07657 F-BAR_Fes_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) and Fer (Fes related) tyrosine kinases. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), and Fer (Fes related) are cytoplasmic (or nonreceptor) tyrosine kinases that play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Although Fes and Fer show redundancy in their biological functions, they show differences in their expression patterns. Fer is ubiquitously expressed while Fes is expressed predominantly in myeloid and endothelial cells. Fes and Fer contain an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a posit
Probab=87.65 E-value=24 Score=32.83 Aligned_cols=85 Identities=18% Similarity=0.207 Sum_probs=50.9
Q ss_pred HhHHHHHHhHHHhh-------hhhhhhHHHHHHHHHHhhHhHHHHHhhHHHhhccccCc----ccccchHHHHHHHHHHH
Q psy5190 150 NALNLFVSSVNTLC-------NKTIEDTLVTVRQYENARVEYDAYRTDLELLLQVTSNV----DSNCSHLDEAQRNFQTH 218 (292)
Q Consensus 150 ~aL~~f~sdl~Tf~-------~KAI~DTllTIkkYE~AR~EYdAyrl~leem~~e~~~~----~~~l~r~etaqr~~q~a 218 (292)
..|..+++++...+ .++-.+-..++...+.++-+|+.+|-+++....--... ..+-..+++++..++++
T Consensus 94 ~~l~~l~~~~~~~rK~~~~~~~kl~~el~~~~~el~k~Kk~Y~~~~~e~e~Ar~k~e~a~~~~~~~~~~~eKak~k~~~~ 173 (237)
T cd07657 94 DKLTLLIKDKRKAKKAYQEERQQIDEQYKKLTDEVEKLKSEYQKLLEDYKAAKSKFEEAVVKGGRGGRKLDKARDKYQKA 173 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHH
Confidence 44555555544443 33344555667777888888888887766654331110 01223567788888888
Q ss_pred HHHHHhHHhHHHHHHh
Q psy5190 219 RENFEKLRNDVVVKLR 234 (292)
Q Consensus 219 K~rFdKLR~DV~vKLd 234 (292)
..+-.+.|+|=+..|.
T Consensus 174 ~~k~~~akNeY~l~l~ 189 (237)
T cd07657 174 CRKLHLCHNDYVLALL 189 (237)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888888877655544
No 104
>cd07602 BAR_RhoGAP_OPHN1-like The Bin/Amphiphysin/Rvs (BAR) domain of Oligophrenin1-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to oligophrenin1 (OPHN1). Members contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, and a Rho GAP domain. Some members contain a C-terminal SH3 domain. Vertebrates harbor at least three Rho GAPs in this subfamily including OPHN1, GTPase Regulator Associated with Focal adhesion kinase (GRAF), GRAF2, and an uncharacterized protein called GAP10-like. OPHN1, GRAF and GRAF2 show GAP activity towards RhoA and Cdc42. In addition, OPHN1 is active towards Rac. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domains of OPHN1
Probab=86.38 E-value=11 Score=34.67 Aligned_cols=122 Identities=13% Similarity=0.161 Sum_probs=75.4
Q ss_pred hhhhhHhhHHHHHhHHHHHHhHHHhhhhhhhhH--------HHHHHHHHHhhHhHHHHHhhHHHhhccccCcccccchHH
Q psy5190 138 QRNLTGTGEILLNALNLFVSSVNTLCNKTIEDT--------LVTVRQYENARVEYDAYRTDLELLLQVTSNVDSNCSHLD 209 (292)
Q Consensus 138 qr~m~k~G~~Ll~aL~~f~sdl~Tf~~KAI~DT--------llTIkkYE~AR~EYdAyrl~leem~~e~~~~~~~l~r~e 209 (292)
-+.|..-|..+..+-.-|..+|+.|-...|+|+ --+++++-++=-|=-.|+..|-+ +.......||..|+
T Consensus 25 ck~~i~a~k~~~~a~~~F~~~L~~f~~~~~g~~~tDDe~~i~~~L~kF~~~l~ei~~~r~~L~~--q~~~~l~~pL~~F~ 102 (207)
T cd07602 25 CKNLISATKNLSKAQRSFAQTLQNFKFECIGETQTDDEIEIAESLKEFGRLIETVEDERDRMLE--NAEEQLIEPLEKFR 102 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence 355666777888888888888888887777776 35566666655555555544322 11222234788888
Q ss_pred HH-HHHHHHHHHHHHhHHhHHHHHHhh---hcccc-h-------hHHHHHHHHHHHHHHHHHhc
Q psy5190 210 EA-QRNFQTHRENFEKLRNDVVVKLRF---LDENR-I-------KVMHKQLLLFHNAISAYFSG 261 (292)
Q Consensus 210 ta-qr~~q~aK~rFdKLR~DV~vKLdL---LdenR-v-------kvm~~QL~~~~nAl~ay~sg 261 (292)
+- .+.+.++|.+|||-..+-..-++= |-.++ - ..+...-..|+.+-..|...
T Consensus 103 k~dl~~~ke~kk~FdK~se~~~~al~k~~~lsk~kk~~~~~ea~~~l~~~r~~f~~~~l~Yv~~ 166 (207)
T cd07602 103 KEQIGGAKEEKKKFDKETEKFCSSLEKHLNLSTKKKENQLQEADAQLDMERRNFHQASLEYVFK 166 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76 578899999999987766554432 22222 2 23333344466666666653
No 105
>cd07636 BAR_GRAF The Bin/Amphiphysin/Rvs (BAR) domain of GTPase Regulator Associated with Focal adhesion kinase. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. GTPase Regulator Associated with Focal adhesion kinase (GRAF), also called Rho GTPase activating protein 26 (ARHGAP26), is a GAP with activity towards RhoA and Cdc42 and is only weakly active towards Rac1. It influences Rho-mediated cytoskeletal rearrangements and binds focal adhesion kinase (FAK), which is a critical component of integrin signaling. GRAF contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of GRAF directly interacts with its Rho GAP domain and inhibits its activity. Autoinhibited GRAF is capable o
Probab=86.31 E-value=4 Score=37.68 Aligned_cols=96 Identities=13% Similarity=0.157 Sum_probs=62.1
Q ss_pred hhhhhhHhhHHHHHhHHHHHHhHHHhhhhhhhhHHH--------HHHHHHHhhHhHHHHHhhHHHhhccccCcccccchH
Q psy5190 137 TQRNLTGTGEILLNALNLFVSSVNTLCNKTIEDTLV--------TVRQYENARVEYDAYRTDLELLLQVTSNVDSNCSHL 208 (292)
Q Consensus 137 tqr~m~k~G~~Ll~aL~~f~sdl~Tf~~KAI~DTll--------TIkkYE~AR~EYdAyrl~leem~~e~~~~~~~l~r~ 208 (292)
..+.|..-|..+..+-.-|..+|+.|-..-|+|+.. .++++-++=-|=-.|+..|-+ +.......||.+|
T Consensus 24 ~~k~~i~A~k~~~~a~~~Fa~sL~~f~~~~~gd~~~dDe~~I~~~L~kF~~~L~ei~~~r~~L~~--qa~~~l~~~L~~F 101 (207)
T cd07636 24 DGKSLIAALKNLSSAKRKFADSLNEFKFQCIGDAETDDEICIARSLQEFAAVLRNLEDERTRMIE--NASEVLITPLEKF 101 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Confidence 345566666777778889999999998766666632 344444444444444433321 2222233588888
Q ss_pred HHH-HHHHHHHHHHHHhHHhHHHHHHh
Q psy5190 209 DEA-QRNFQTHRENFEKLRNDVVVKLR 234 (292)
Q Consensus 209 eta-qr~~q~aK~rFdKLR~DV~vKLd 234 (292)
++- .+.+.++|.+|||-..+-..-++
T Consensus 102 ~kedi~~~Ke~kK~FdK~se~~~~al~ 128 (207)
T cd07636 102 RKEQIGAAKEAKKKYDKETEKYCAVLE 128 (207)
T ss_pred HHHHHHHHHHHhhhHhhhhhHHHHHHH
Confidence 876 47899999999999888765554
No 106
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=85.16 E-value=31 Score=33.24 Aligned_cols=44 Identities=7% Similarity=0.123 Sum_probs=34.5
Q ss_pred cCchhhhHHHHHHHHHHHHHHHHHHHHhhcChhhHHHHhhchhh
Q psy5190 94 TVDSDLKSRVLVIFFLQQTLGEAFADLAQKSPELQEEFLCNSET 137 (292)
Q Consensus 94 TvD~ELeakIl~l~qtq~~lgd~F~~Ls~kEpeL~~eF~~naet 137 (292)
+.++||-.++..|+++++.+...+..+|.+--.+++++...|+.
T Consensus 50 ~~~pe~sr~L~~LIk~EK~vi~s~e~~are~~~~A~~L~~WG~~ 93 (271)
T PF13805_consen 50 SQQPELSRKLQRLIKAEKSVIRSLESAARERKAAAKQLSEWGEQ 93 (271)
T ss_dssp ----TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccChHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 56788888988999999999999999999888888777777654
No 107
>cd07633 BAR_OPHN1 The Bin/Amphiphysin/Rvs (BAR) domain of Oligophrenin-1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Oligophrenin-1 (OPHN1) is a GTPase activating protein (GAP) with activity towards RhoA, Rac, and Cdc42, that is expressed in developing spinal cord and in adult brain areas with high plasticity. It plays a role in regulating the actin cystoskeleton as well as morphology changes in axons and dendrites, and may also function in modulating neuronal connectivity. Mutations in the OPHN1 gene causes X-linked mental retardation associated with cerebellar hypoplasia, lateral ventricle enlargement and epilepsy. OPHN1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, and a Rho GAP domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=85.02 E-value=3.6 Score=38.10 Aligned_cols=95 Identities=14% Similarity=0.145 Sum_probs=62.8
Q ss_pred hhhhhHhhHHHHHhHHHHHHhHHHhhhhhhhhHH--------HHHHHHHHhhHhHHHHHhhHHHhhccccCcccccchHH
Q psy5190 138 QRNLTGTGEILLNALNLFVSSVNTLCNKTIEDTL--------VTVRQYENARVEYDAYRTDLELLLQVTSNVDSNCSHLD 209 (292)
Q Consensus 138 qr~m~k~G~~Ll~aL~~f~sdl~Tf~~KAI~DTl--------lTIkkYE~AR~EYdAyrl~leem~~e~~~~~~~l~r~e 209 (292)
.+.|...|..+..+-+-|...|+-|-...|+|+. -.++++-+.=-|---|+..| +++..+....||..|+
T Consensus 25 ~~~li~a~K~~s~A~r~Fa~~L~df~f~~igd~~tdde~~I~~sL~~F~~~L~~ie~~r~~l--~d~aq~s~~~~L~~F~ 102 (207)
T cd07633 25 GNALISAIKEYSSAVQKFSQTLQSFQFDFIGDTLTDDEINIAESFKEFAELLQEVEEERMMM--VQNASDLLIKPLENFR 102 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 4566677788888889999999999999999987 33333333322222222222 2222233345888887
Q ss_pred HH-HHHHHHHHHHHHhHHhHHHHHHh
Q psy5190 210 EA-QRNFQTHRENFEKLRNDVVVKLR 234 (292)
Q Consensus 210 ta-qr~~q~aK~rFdKLR~DV~vKLd 234 (292)
+= -+.+.+.|.+|||-..+-..-|+
T Consensus 103 Kedi~~~Ke~KK~FdK~se~~~~aL~ 128 (207)
T cd07633 103 KEQIGFTKERKKKFEKDSEKFYSLLD 128 (207)
T ss_pred HHHHHHHHHHhhhhhhhhhHHHHHHH
Confidence 65 47899999999999888765554
No 108
>cd07658 F-BAR_NOSTRIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Nitric Oxide Synthase TRaffic INducer (NOSTRIN). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Nitric Oxide Synthase TRaffic INducer (NOSTRIN) is expressed in endothelial and epithelial cells and is involved in the regulation, trafficking and targeting of endothelial NOS (eNOS). NOSTRIN facilitates the endocytosis of eNOS by coordinating the functions of dynamin and the Wiskott-Aldrich syndrome protein (WASP). Increased expression of NOSTRIN may be correlated to preeclampsia. NOSTRIN contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. The F-BAR domain of NOSTRIN is necessary and sufficient fo
Probab=84.29 E-value=34 Score=31.57 Aligned_cols=176 Identities=13% Similarity=0.167 Sum_probs=90.2
Q ss_pred cccchhHHHHHHHHHHhCCCCccCchhhhHHHHHHHHHHHHHHHHHHHHhhc-------C-hhhHHHHhhc-------hh
Q psy5190 72 WGISTYKCTRQIMYEKLGKSTRTVDSDLKSRVLVIFFLQQTLGEAFADLAQK-------S-PELQEEFLCN-------SE 136 (292)
Q Consensus 72 W~~~tyk~TKQ~l~EklGk~~~TvD~ELeakIl~l~qtq~~lgd~F~~Ls~k-------E-peL~~eF~~n-------ae 136 (292)
|+.+-|..+.+.+ +.|-+++ -||..=+=+-..+...|+..+..||.+ + ..+...|..+ |+
T Consensus 2 ~~~~g~~~l~~~~----~~G~~~c-kel~~f~kERa~IE~~YAK~L~kLa~k~~k~~~~~~Gtl~~aw~~~~~e~e~~a~ 76 (239)
T cd07658 2 MGQKGFEELRRYV----KQGGDFC-KELATVLQERAELELNYAKGLSKLSGKLSKASKSVSGTLSSAWTCVAEEMESEAD 76 (239)
T ss_pred CCcchHHHHHHHH----HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHH
Confidence 5666666555443 2333333 222222214556667777777777653 1 1244444433 44
Q ss_pred hhhhhhHhhH-HHHHhHHHHHHhHHHhhhhhhhhHH-------HHHHHHHHhhHhHHHHHhhHHHhhccc----------
Q psy5190 137 TQRNLTGTGE-ILLNALNLFVSSVNTLCNKTIEDTL-------VTVRQYENARVEYDAYRTDLELLLQVT---------- 198 (292)
Q Consensus 137 tqr~m~k~G~-~Ll~aL~~f~sdl~Tf~~KAI~DTl-------lTIkkYE~AR~EYdAyrl~leem~~e~---------- 198 (292)
.|..+..+=. .+..+|.-|..+..-=.-..-.+.. .-.++.+.+|=.|...|.+.+...+..
T Consensus 77 ~H~~la~~L~~ev~~~l~~~~~~~~k~rK~~~~~~~k~qk~~~~~~~~~~k~kk~y~~~~kE~e~a~~~~~~~~~~~~~~ 156 (239)
T cd07658 77 IHRNLGSALTEEAIKPLRQVLDEQHKTRKPVENEVDKAAKLLTDWRSEQIKVKKKLHGLARENEKLQDQVEDNKQSCTKQ 156 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Confidence 5555554333 5667777777775443222222222 224445568888888887776654321
Q ss_pred --------cC--cccccchHH----HHHHH--------------HHHHHHHHHhHHhHHHHHHhhhcccchhHHHHHHHH
Q psy5190 199 --------SN--VDSNCSHLD----EAQRN--------------FQTHRENFEKLRNDVVVKLRFLDENRIKVMHKQLLL 250 (292)
Q Consensus 199 --------~~--~~~~l~r~e----taqr~--------------~q~aK~rFdKLR~DV~vKLdLLdenRvkvm~~QL~~ 250 (292)
.. ....+.|++ .+... .+..+..|..-=.+++.+.+-+++.|+.-|...|..
T Consensus 157 ~~~~~~~k~~~~~~k~~~Kl~~k~~ka~~~~~k~e~~y~~~~~~l~~~~~~~~~~~~~~~~~~Q~~E~~rl~~~k~~l~~ 236 (239)
T cd07658 157 KMLNKLKKSAEVQDKEDEKLEAKRKKGEESRLKAENEYYTCCVRLERLRLEWESALRKGLNQYESLEEERLQHLKHSLSQ 236 (239)
T ss_pred HHHhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 112333433 23222 223444455555566666677777776666666666
Q ss_pred HH
Q psy5190 251 FH 252 (292)
Q Consensus 251 ~~ 252 (292)
|+
T Consensus 237 y~ 238 (239)
T cd07658 237 YL 238 (239)
T ss_pred hc
Confidence 54
No 109
>cd07604 BAR_ASAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ASAPs (ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) with similarity to ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins) in that they contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and ankyrin (ANK) repeats. However, ASAPs contain an additional C-terminal SH3 domain. ASAPs function in regulating cell growth, migration, and invasion. Vertebrates contain at least three members, ASAP1, ASAP2, and ASAP3. ASAP1 and ASAP2 shows GTPase activating protein (GAP) activity towards Arf1 and Arf5. They do not show GAP activity towards Arf6, but is able to mediate
Probab=83.93 E-value=23 Score=32.63 Aligned_cols=114 Identities=11% Similarity=0.113 Sum_probs=71.4
Q ss_pred hHHHHhhchhhhhhhhHhhHHHHHhHHHHHHhHHHhhhhhhhhH----HHHHHHHHHhhHhHHHHHhhHHHhhccccCcc
Q psy5190 127 LQEEFLCNSETQRNLTGTGEILLNALNLFVSSVNTLCNKTIEDT----LVTVRQYENARVEYDAYRTDLELLLQVTSNVD 202 (292)
Q Consensus 127 L~~eF~~naetqr~m~k~G~~Ll~aL~~f~sdl~Tf~~KAI~DT----llTIkkYE~AR~EYdAyrl~leem~~e~~~~~ 202 (292)
+...+.+.-+.-|.|...|..+..+..-|...|+.|-...+.|- --++.++..+=.|=-+|+.-| +++......
T Consensus 14 ~~~~l~Kl~K~~k~~~~~g~~~~~~~~~F~~aL~~~g~~~~~~~~~~i~~~l~kF~~~l~El~~~~~~L--~~~~~~~i~ 91 (215)
T cd07604 14 DRVGLQKLKKAVKAIHNSGLAHVENELQFAEALEKLGSKALSREEEDLGAAFLKFSVFTKELAALFKNL--MQNLNNIIM 91 (215)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccccCcccHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
Confidence 33445555556677778888888888888888888887776542 344555555555544444322 111111122
Q ss_pred cccchHHHH-HHHHH-HHHHHHHhHHhHHHHHHhhhcccchh
Q psy5190 203 SNCSHLDEA-QRNFQ-THRENFEKLRNDVVVKLRFLDENRIK 242 (292)
Q Consensus 203 ~~l~r~eta-qr~~q-~aK~rFdKLR~DV~vKLdLLdenRvk 242 (292)
.||..|.+. .+.+. +.|.+|||-+.|--.+..-++..|-+
T Consensus 92 ~pL~~f~k~dL~~~k~e~KK~fdK~s~~ye~~~~k~~k~Kk~ 133 (215)
T cd07604 92 FPLDSLLKGDLKGSKGDLKKPFDKAWKDYETKASKIEKEKKQ 133 (215)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 488888887 56665 99999999998765555555555544
No 110
>cd07675 F-BAR_FNBP1L The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 1-Like. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FormiN Binding Protein 1-Like (FNBP1L), also known as Toca-1 (Transducer of Cdc42-dependent actin assembly), forms a complex with neural Wiskott-Aldrich syndrome protein (N-WASP). The FNBP1L/N-WASP complex induces the formation of filopodia and endocytic vesicles. FNBP1L is required for Cdc42-induced actin assembly and is essential for autophagy of intracellular pathogens. It contains an N-terminal F-BAR domain, a central Cdc42-binding HR1 domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=83.04 E-value=16 Score=34.66 Aligned_cols=108 Identities=14% Similarity=0.210 Sum_probs=62.9
Q ss_pred HHHHhHHHHHHhHHHhhhhhhhhHH-------HHHHHHHHhhHhHHHHHhhHHHhhccccCc--cccc--chHHHHHHHH
Q psy5190 147 ILLNALNLFVSSVNTLCNKTIEDTL-------VTVRQYENARVEYDAYRTDLELLLQVTSNV--DSNC--SHLDEAQRNF 215 (292)
Q Consensus 147 ~Ll~aL~~f~sdl~Tf~~KAI~DTl-------lTIkkYE~AR~EYdAyrl~leem~~e~~~~--~~~l--~r~etaqr~~ 215 (292)
.+..+|..+..++..-+-+.+.|-. ..++.++.||-.|+..|-+.|......... ...+ ..+++++.++
T Consensus 92 ~v~~~l~~~~~~l~~~rk~~~~~~~klqk~l~~~~~~leksKk~Y~~acke~E~A~~k~~ka~~d~~~tk~~~eK~k~~~ 171 (252)
T cd07675 92 RVYGELMRYSHDLKGERKMHLQEGRKAQQYLDMCWKQMDNSKKKFERECREAEKAQQSYERLDNDTNATKSDVEKAKQQL 171 (252)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccCHHHHHHHHHHH
Confidence 5567777777777766655544433 468889999999999998887765442110 1111 2245554443
Q ss_pred HHHHHH----------------------HHhHHhHHHHHHhhhcccchhHHHHHHHHHHHH
Q psy5190 216 QTHREN----------------------FEKLRNDVVVKLRFLDENRIKVMHKQLLLFHNA 254 (292)
Q Consensus 216 q~aK~r----------------------FdKLR~DV~vKLdLLdenRvkvm~~QL~~~~nA 254 (292)
+....- |...=-.|+.++.=|+++|+..|...+..+...
T Consensus 172 ~~~~q~~e~aKn~Y~~~L~~~N~~q~k~Y~e~mP~vfd~lQ~leE~Ri~~l~e~~~~~~~~ 232 (252)
T cd07675 172 NLRTHMADESKNEYAAQLQNFNGEQHKHFYIVIPQIYKQLQEMDERRTVKLSECYRGFADS 232 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333 333333456666666666666666655555443
No 111
>cd07639 BAR_ACAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP1 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1), also called centaurin beta-1, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP1 also participates in the cargo sorting and recycling of the transferrin receptor and integrin beta1. It may also play a role in innate immune responses. ACAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=80.30 E-value=28 Score=31.93 Aligned_cols=98 Identities=15% Similarity=0.204 Sum_probs=54.2
Q ss_pred hhhhhHhhHHHHHhHHHHHHhHHHhhhhhhhhHH--HHHHHHHHhhHhHHHHHhhHHHhhccccCcccccchHHHH-HHH
Q psy5190 138 QRNLTGTGEILLNALNLFVSSVNTLCNKTIEDTL--VTVRQYENARVEYDAYRTDLELLLQVTSNVDSNCSHLDEA-QRN 214 (292)
Q Consensus 138 qr~m~k~G~~Ll~aL~~f~sdl~Tf~~KAI~DTl--lTIkkYE~AR~EYdAyrl~leem~~e~~~~~~~l~r~eta-qr~ 214 (292)
-+.|...|..+..+-.-|..+|..|-..-++|+. -.++++-++=-|=-.|+..| +++.......||..|.+. .+.
T Consensus 25 ~k~~~~agk~~~~a~~~F~~~L~~f~~~~~~D~~i~~~l~kFs~~l~ei~~~~~~L--l~~~~~~l~~~L~~F~k~dl~~ 102 (200)
T cd07639 25 GSGMLEGGRHYCAASRAFVDGLCDLAHHGPKDPMMAECLEKFSDGLNHILDSHAEL--LEATQFSFKQQLQLLVKEDLRG 102 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhhHH
Confidence 3555556666666666666666666665566643 12222222222221121111 111112223478888877 468
Q ss_pred HHHHHHHHHhHHhHHHHHHhhhc
Q psy5190 215 FQTHRENFEKLRNDVVVKLRFLD 237 (292)
Q Consensus 215 ~q~aK~rFdKLR~DV~vKLdLLd 237 (292)
+.++|.+|||...|-...++=..
T Consensus 103 vKe~kK~FdK~s~~~d~al~K~~ 125 (200)
T cd07639 103 FRDARKEFERGAESLEAALQHNA 125 (200)
T ss_pred HHHHhhhHhhcchhHHHHHHHHh
Confidence 99999999999998766654433
No 112
>cd07634 BAR_GAP10-like The Bin/Amphiphysin/Rvs (BAR) domain of Rho GTPase activating protein 10-like. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This group is composed of uncharacterized proteins called Rho GTPase activating protein (GAP) 10-like. GAP10-like may be a GAP with activity towards RhoA and Cdc42. Similar to GRAF and GRAF2, it contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domains of the related proteins GRAF and OPHN1, directly interact with their Rho GAP domains and inhibit theiractivity. The autoinhibited proteins are capable of binding membranes and tubulating liposomes, showing that the membrane-tubulation and GAP-inhibitory functions of the BAR domain
Probab=79.31 E-value=18 Score=33.49 Aligned_cols=92 Identities=15% Similarity=0.073 Sum_probs=57.3
Q ss_pred hhhhHhhHHHHHhHHHHHHhHHHhhhhhhhhH-----------HHHHHHHHHhhHhHHHHHhhHHHhhccccCcccccch
Q psy5190 139 RNLTGTGEILLNALNLFVSSVNTLCNKTIEDT-----------LVTVRQYENARVEYDAYRTDLELLLQVTSNVDSNCSH 207 (292)
Q Consensus 139 r~m~k~G~~Ll~aL~~f~sdl~Tf~~KAI~DT-----------llTIkkYE~AR~EYdAyrl~leem~~e~~~~~~~l~r 207 (292)
+.|..-|..+..+-.-|...|+-|-...|+|+ +...-++-++=.||+.-+ +++.......||..
T Consensus 26 ~~li~A~k~~~~a~~~Fa~sL~~f~~~~igd~~tDde~~i~~~l~~Fs~~l~el~~~~~~L-----~~~~~~~l~~pL~~ 100 (207)
T cd07634 26 SLLIGALRNLSMAVQKFSQSLQDFQFECIGDAETDDEISIAQSLKEFARLLIAVEEERRRL-----IQNANDVLIAPLEK 100 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHH
Confidence 34444556666777778888888876666665 333333333333333322 22222222348888
Q ss_pred HHHH-HHHHHHHHHHHHhHHhHHHHHHhh
Q psy5190 208 LDEA-QRNFQTHRENFEKLRNDVVVKLRF 235 (292)
Q Consensus 208 ~eta-qr~~q~aK~rFdKLR~DV~vKLdL 235 (292)
|.+. .+.+.++|.+|||-..|-...++=
T Consensus 101 f~k~dl~~vKe~kK~FDK~se~y~~aleK 129 (207)
T cd07634 101 FRKEQIGAAKDGKKKFDKESEKYYSILEK 129 (207)
T ss_pred HHHHHHHHHHHHccchhHHHhHHHHHHHH
Confidence 8887 478999999999999998877763
No 113
>cd07601 BAR_APPL The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains, and are localized to cytoplasmic membranes. Vertebrates contain two APPL proteins, APPL1 and APPL2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=78.49 E-value=57 Score=30.27 Aligned_cols=123 Identities=17% Similarity=0.195 Sum_probs=70.4
Q ss_pred hhhhhhHhhHHHHHhHHHHHHhHHHhhhh----hhhhHHH--HHHHHHHhhHhHHHHHhhHHHhhccccCcccccchHHH
Q psy5190 137 TQRNLTGTGEILLNALNLFVSSVNTLCNK----TIEDTLV--TVRQYENARVEYDAYRTDLELLLQVTSNVDSNCSHLDE 210 (292)
Q Consensus 137 tqr~m~k~G~~Ll~aL~~f~sdl~Tf~~K----AI~DTll--TIkkYE~AR~EYdAyrl~leem~~e~~~~~~~l~r~et 210 (292)
..+.|..-|..+..+-.-|...|..|-.. --.|... ++.++-.+=-|=-.|+..|- ++.......||..|.+
T Consensus 24 ~c~~~~~a~~~~~~A~~~F~~~L~ef~~~~f~~~~dDe~~~~~l~kFs~~l~El~~~~~~L~--~q~~~~l~~pL~~F~k 101 (215)
T cd07601 24 ACKRVYDAQNELKSATQALSKKLGEYEKQKFELGRDDEILVSTLKQFSKVVDELSTMHSTLS--SQLADTVLHPISQFME 101 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 34555566667777777777777777333 2333332 44444444333333332221 1111222248888886
Q ss_pred H-HHHHHHHHHHHHhHHhHHHH---HHhhhcccc----h-----hHHHHHHHHHHHHHHHHHhc
Q psy5190 211 A-QRNFQTHRENFEKLRNDVVV---KLRFLDENR----I-----KVMHKQLLLFHNAISAYFSG 261 (292)
Q Consensus 211 a-qr~~q~aK~rFdKLR~DV~v---KLdLLdenR----v-----kvm~~QL~~~~nAl~ay~sg 261 (292)
. .+.+.+.|.+|||-..|-.. |.-=|..+| + ..+...-..|+.+...|...
T Consensus 102 ~Dl~~vKe~kK~FdK~s~~~d~al~K~~~l~k~k~~~~~~~Ea~~~l~~~R~~F~~~~ldYv~~ 165 (215)
T cd07601 102 SDLAEIMTLKELFKAASNDHDGVLSKYSRLSKKRENTKVKIEVNDEVYACRKKQHQTAMNYYCA 165 (215)
T ss_pred HHhHHHHHHHHHHHHHhHHHHHHHHHHhhCCcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6 57888999999998888755 544455554 1 23455566777777777763
No 114
>PF06456 Arfaptin: Arfaptin-like domain; InterPro: IPR010504 Arfaptin interacts with ARF1, a small GTPase involved in vesicle budding at the Golgi complex and immature secretory granules. The structure of arfaptin shows that upon binding to a small GTPase, arfaptin forms a an elongated, crescent-shaped dimer of three-helix coiled-coils []. The N-terminal region of ICA69 is similar to arfaptin [].; PDB: 1I4D_B 1I4L_B 1I49_B 1I4T_A 4DCN_D.
Probab=78.46 E-value=29 Score=32.24 Aligned_cols=42 Identities=17% Similarity=0.174 Sum_probs=36.2
Q ss_pred HHHHHHHHHHhhcChhhHHHHhhchh------hhhhhhHhhHHHHHhH
Q psy5190 111 QTLGEAFADLAQKSPELQEEFLCNSE------TQRNLTGTGEILLNAL 152 (292)
Q Consensus 111 ~~lgd~F~~Ls~kEpeL~~eF~~nae------tqr~m~k~G~~Ll~aL 152 (292)
+.|..+|+.+++.+.+|++.|...|. .++.|..+|+++...-
T Consensus 57 ~~~~~~l~~l~q~q~~lg~~f~~~~~~e~~~~l~~~f~~~~~~~~~~~ 104 (229)
T PF06456_consen 57 RAYQNRLQALSQTQKELGDFFAELGVREKSPALGEEFSANGEAQRSLA 104 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--H-CCGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHH
Confidence 57889999999999999999999887 5789999998776443
No 115
>cd07609 BAR_SIP3_fungi The Bin/Amphiphysin/Rvs (BAR) domain of fungal Snf1p-interacting protein 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of mostly uncharacterized fungal proteins with similarity to Saccharomyces cerevisiae Snf1p-interacting protein 3 (SIP3). These proteins contain an N-terminal BAR domain followed by a Pleckstrin Homology (PH) domain. SIP3 interacts with SNF1 protein kinase and activates transcription when anchored to DNA. It may function in the SNF1 pathway. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=78.44 E-value=39 Score=31.24 Aligned_cols=151 Identities=14% Similarity=0.186 Sum_probs=92.0
Q ss_pred hhhhhhhhhcccchhHHHHHHHHHHhCCCCccCchhhhHHHHHHHHHHHHHHHHHHH-----HhhcChh-hHHHHhhchh
Q psy5190 63 VSKIESIKNWGISTYKCTRQIMYEKLGKSTRTVDSDLKSRVLVIFFLQQTLGEAFAD-----LAQKSPE-LQEEFLCNSE 136 (292)
Q Consensus 63 ~~k~~~~k~W~~~tyk~TKQ~l~EklGk~~~TvD~ELeakIl~l~qtq~~lgd~F~~-----Ls~kEpe-L~~eF~~nae 136 (292)
...++.|-+|--...++++..+.+ + .+|+.=+ ..|=..+-- =++-..+ .-..+..|++
T Consensus 7 ~~Qi~~iE~Wl~~~~~~~~k~~~~-~--------~~~e~~~-------nsfl~~~~p~~~~s~~vidqdYT~~al~~f~~ 70 (214)
T cd07609 7 DDQVDAIEKWLDGYVSSTKKLYSS-L--------DELERVI-------NSFLSHLLPPLLVSGGVIDQDYTPLALKRFGD 70 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-H--------HHHHHHH-------HHHHHhcCCccccccchhCchhHHHHHHHHHH
Confidence 467888888988888888877652 2 2333222 111111110 0000010 1113334444
Q ss_pred hhhhhhHhhHHHHHhH----HHHHHhHHHhhhhhhhhHHHHHHHHHHhhHhHHHHHhhHHHhhccccCcccccchHHHHH
Q psy5190 137 TQRNLTGTGEILLNAL----NLFVSSVNTLCNKTIEDTLVTVRQYENARVEYDAYRTDLELLLQVTSNVDSNCSHLDEAQ 212 (292)
Q Consensus 137 tqr~m~k~G~~Ll~aL----~~f~sdl~Tf~~KAI~DTllTIkkYE~AR~EYdAyrl~leem~~e~~~~~~~l~r~etaq 212 (292)
.-+-|. ..++..+ .-++.-|.+|+...|.-.+.+-|+++.+.-.||+++...-.++... .-..++++-
T Consensus 71 ~l~e~~---~~ll~~~~~~~~~~~~pL~~f~k~~i~~~Ke~rk~Fd~~q~kyD~~L~r~~~~sk~K-----~p~~l~Eda 142 (214)
T cd07609 71 GLKDFW---GGVLSALKGNDSLILDPLRSFVKSDIRPYKELRKNFEYYQRKYDSMLARYVAQSKTK-----EPSSLREDA 142 (214)
T ss_pred HHHHHH---HHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC-----ChhhhhhHH
Confidence 433333 2333333 3467778888888999999999999999999999987754443221 124577888
Q ss_pred HHHHHHHHHHHhHHhHHHHHHhhhc
Q psy5190 213 RNFQTHRENFEKLRNDVVVKLRFLD 237 (292)
Q Consensus 213 r~~q~aK~rFdKLR~DV~vKLdLLd 237 (292)
.++-++|..|-+.=.|.+..+-.|.
T Consensus 143 ~qL~e~Rk~Y~~aSLDyv~qi~~lq 167 (214)
T cd07609 143 FQLFEARKAYLKASLDLVIAIPQLR 167 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8889999999999999888665443
No 116
>cd07606 BAR_SFC_plant The Bin/Amphiphysin/Rvs (BAR) domain of the plant protein SCARFACE (SFC). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. The plant protein SCARFACE (SFC), also called VAscular Network 3 (VAN3), is a plant ACAP (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein), an Arf GTPase Activating Protein (GAP) that plays a role in the trafficking of auxin efflux regulators from the plasma membrane to the endosome. It is required for the normal vein patterning in leaves. SCF contains an N-terminal BAR domain, followed by a Pleckstrin Homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=77.46 E-value=58 Score=29.81 Aligned_cols=137 Identities=10% Similarity=0.122 Sum_probs=72.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhcChhhHHHHhhchhh--hhhhhHhhHHHHHhHHHHHHhHHHhhhhhhhhHHHHH
Q psy5190 97 SDLKSRVLVIFFLQQTLGEAFADLAQKSPELQEEFLCNSET--QRNLTGTGEILLNALNLFVSSVNTLCNKTIEDTLVTV 174 (292)
Q Consensus 97 ~ELeakIl~l~qtq~~lgd~F~~Ls~kEpeL~~eF~~naet--qr~m~k~G~~Ll~aL~~f~sdl~Tf~~KAI~DTllTI 174 (292)
.+|+.++-.+++..+.+.++..+++.-+-........++.. .-++...|..-+....-++++|++|...-+..+-.+|
T Consensus 11 ~~l~~~~~Kl~K~~~~~~~a~~~~~~a~~~Fa~~L~~f~~~~dD~~~~a~gg~~l~kF~~~l~ei~~~~~~L~~q~~~~l 90 (202)
T cd07606 11 DELRDRSLKLYKGCRKYRDALGEAYDGDSAFAESLEEFGGGHDDPISVAVGGPVMTKFTSALREIGSYKEVLRSQVEHML 90 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777888999999998888877666544444444311 2344444444444445555555555443332222211
Q ss_pred HHHHHhhHhHHHHHhhHHHhhccccCcccccchHHHH-HHHHHHHHHHHHhHHhHHHH---HHhhhcc-cc-------hh
Q psy5190 175 RQYENARVEYDAYRTDLELLLQVTSNVDSNCSHLDEA-QRNFQTHRENFEKLRNDVVV---KLRFLDE-NR-------IK 242 (292)
Q Consensus 175 kkYE~AR~EYdAyrl~leem~~e~~~~~~~l~r~eta-qr~~q~aK~rFdKLR~DV~v---KLdLLde-nR-------vk 242 (292)
..||..|.+. .+.+.++|.+|||-..|-.. |.=-|.- +| -+
T Consensus 91 ---------------------------~~pL~~F~k~Dl~~vKe~kK~FdK~s~~yd~al~K~~~l~k~~k~~~~~ea~~ 143 (202)
T cd07606 91 ---------------------------NDRLAQFADTDLQEVKDARRRFDKASLDYEQARSKFLSLTKDAKPEILAAAEE 143 (202)
T ss_pred ---------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCchHHHHHHHH
Confidence 1255555544 45566666666666665543 3222222 12 23
Q ss_pred HHHHHHHHHHHHHHHHHh
Q psy5190 243 VMHKQLLLFHNAISAYFS 260 (292)
Q Consensus 243 vm~~QL~~~~nAl~ay~s 260 (292)
.+...=..|+.+...|..
T Consensus 144 ~l~~~R~~F~~~~ldyv~ 161 (202)
T cd07606 144 DLGTTRSAFETARFDLMN 161 (202)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444556666666654
No 117
>cd07652 F-BAR_Rgd1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Saccharomyces cerevisiae Rho GTPase activating protein Rgd1 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Saccharomyces cerevisiae Rgd1 is a GTPase activating protein (GAP) with activity towards Rho3p and Rho4p, which are involved in bud growth and cytokinesis, respectively. At low pH, S. cerevisiae Rgd1 is required for cell survival and the activation of the protein kinase C pathway, which is important in cell integrity and the maintenance of cell shape. It contains an N-terminal F-BAR domain and a C-terminal Rho GAP domain. The F-BAR domain of S. cerevisiae Rgd1 binds to phosphoinositides and plays an important role in the localization of the protein to the bud tip/neck during the cell cycle. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that
Probab=76.39 E-value=64 Score=29.76 Aligned_cols=126 Identities=16% Similarity=0.188 Sum_probs=75.2
Q ss_pred hHHHHhhchhhhhhhhHhhHHHHHhHHHHHHhHHHhhh--------------hhhhhHHHHHHHHHHhhHhHHHHHhhHH
Q psy5190 127 LQEEFLCNSETQRNLTGTGEILLNALNLFVSSVNTLCN--------------KTIEDTLVTVRQYENARVEYDAYRTDLE 192 (292)
Q Consensus 127 L~~eF~~naetqr~m~k~G~~Ll~aL~~f~sdl~Tf~~--------------KAI~DTllTIkkYE~AR~EYdAyrl~le 192 (292)
+...|...-..+..|..+++.+...|.-|+.+|..|.. ++--+....+...+.||--|+..|.++|
T Consensus 63 ~~~a~~~il~~~e~lA~~h~~~a~~L~~~~~eL~~l~~~~e~~RK~~ke~~~k~~k~~~~a~~~leKAK~~Y~~~c~e~E 142 (234)
T cd07652 63 FSNAYHSSLEFHEKLADNGLRFAKALNEMSDELSSLAKTVEKSRKSIKETGKRAEKKVQDAEAAAEKAKARYDSLADDLE 142 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555667777888777777777777766644 2333444556667999999999999999
Q ss_pred HhhccccCcc--------cccc--------hHHHH----HHHHHHHHH----HHHhHHhHHHHHHhhhcccchhHHHHHH
Q psy5190 193 LLLQVTSNVD--------SNCS--------HLDEA----QRNFQTHRE----NFEKLRNDVVVKLRFLDENRIKVMHKQL 248 (292)
Q Consensus 193 em~~e~~~~~--------~~l~--------r~eta----qr~~q~aK~----rFdKLR~DV~vKLdLLdenRvkvm~~QL 248 (292)
.+........ .... |++.| ..|++.+.. =|...|-.++.+|.=|+.-+-.-|.-||
T Consensus 143 kar~~~~~~~~~~~~k~~~~~~~~Ee~~~~K~~~A~~~Y~~~v~~~n~~q~e~~~~~~p~i~~~lq~li~e~d~~l~~~~ 222 (234)
T cd07652 143 RVKTGDPGKKLKFGLKGNKSAAQHEDELLRKVQAADQDYASKVNAAQALRQELLSRHRPEAVKDLFDLILEIDAALRLQY 222 (234)
T ss_pred HHhccCCCccccccccchhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHH
Confidence 8875522101 0111 22222 122222222 2235566666666666777777777777
Q ss_pred HHHH
Q psy5190 249 LLFH 252 (292)
Q Consensus 249 ~~~~ 252 (292)
+.|.
T Consensus 223 ~~~~ 226 (234)
T cd07652 223 QKYA 226 (234)
T ss_pred HHHh
Confidence 6664
No 118
>KOG2398|consensus
Probab=75.43 E-value=1.2e+02 Score=32.42 Aligned_cols=144 Identities=17% Similarity=0.243 Sum_probs=85.0
Q ss_pred HHHHHHHHHhhcChhh----HHHHhhchhhhhhhhHhhHHHHHhHHHHHHhHHHhhhhhhhhHHHHHHHHHHhhHhHHHH
Q psy5190 112 TLGEAFADLAQKSPEL----QEEFLCNSETQRNLTGTGEILLNALNLFVSSVNTLCNKTIEDTLVTVRQYENARVEYDAY 187 (292)
Q Consensus 112 ~lgd~F~~Ls~kEpeL----~~eF~~naetqr~m~k~G~~Ll~aL~~f~sdl~Tf~~KAI~DTllTIkkYE~AR~EYdAy 187 (292)
.++..--.|+++..++ .+.+...-++++.+...|..=+..++.... ......|.+++--|..-
T Consensus 58 ~ma~~h~~l~~~l~~~i~~~~k~~~~~~k~~k~~~~~~v~~~~~~q~~~~-------------~~~~~~~~~~~~~~~~~ 124 (611)
T KOG2398|consen 58 AMAKSHLELSRELQDLIKDVAKYYAEQLKTRKKSKEEGVEKLKQDQSKKK-------------AKDTYEVLCAKSNYLHR 124 (611)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHH-------------HHHHHHHHHHHHHHHHH
Confidence 3444444455544442 233333344556666555444444433321 22334455555556666
Q ss_pred HhhHHHhhccccCcccccc----hHHHHHHHHHHHHHHHHhHHh-------HHHHHHhhhcccchhHHHHHHHHHHHHHH
Q psy5190 188 RTDLELLLQVTSNVDSNCS----HLDEAQRNFQTHRENFEKLRN-------DVVVKLRFLDENRIKVMHKQLLLFHNAIS 256 (292)
Q Consensus 188 rl~leem~~e~~~~~~~l~----r~etaqr~~q~aK~rFdKLR~-------DV~vKLdLLdenRvkvm~~QL~~~~nAl~ 256 (292)
|..++-+.-.... ...+. ++.++...++...++|++.|. |+|.|.+..++.|..-|..-|++|.|.++
T Consensus 125 ~~e~e~~~~~~k~-~~~~~k~~~~i~~~~~~y~~~~~~~~~vr~~w~~~~~~~c~~fQ~~Ee~rl~~lk~~l~~~~~~is 203 (611)
T KOG2398|consen 125 CQEKESLKEKEKR-KKELAKAELKIKEAREEYRSLVAKLEKVRKDWEQEMTDLCLKFQEIEESRLSFLKEELWLFANQIS 203 (611)
T ss_pred HHhhhhcccccch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6665555433321 11112 233345566666666666665 57999999999999999999999999999
Q ss_pred HHHhcCHHHHHHH
Q psy5190 257 AYFSGNEPGLQAT 269 (292)
Q Consensus 257 ay~sgn~~~Le~t 269 (292)
.=+-.+.+.++..
T Consensus 204 ~~~~~~~q~~E~~ 216 (611)
T KOG2398|consen 204 ESCVKIDQVMEEF 216 (611)
T ss_pred HhccchhHHHHHH
Confidence 8888877777654
No 119
>KOG1660|consensus
Probab=69.98 E-value=1.3e+02 Score=30.47 Aligned_cols=102 Identities=16% Similarity=0.129 Sum_probs=66.9
Q ss_pred hhhhHHHHHHHHHHhhHhHHHHHhhHHHhhccccCcccccchHHHHHHHHHHHHHHHHhHHhHHHHHHhhhcccchhHHH
Q psy5190 166 TIEDTLVTVRQYENARVEYDAYRTDLELLLQVTSNVDSNCSHLDEAQRNFQTHRENFEKLRNDVVVKLRFLDENRIKVMH 245 (292)
Q Consensus 166 AI~DTllTIkkYE~AR~EYdAyrl~leem~~e~~~~~~~l~r~etaqr~~q~aK~rFdKLR~DV~vKLdLLdenRvkvm~ 245 (292)
-+.-..+-..+=+.|=..|-++-.-++.....-. .|..|...-+++..+|+++-.-.-+-|-=+-..||.-+.
T Consensus 296 ~~~aakdllyRr~Rcl~~ye~ank~l~kar~knk-------dv~~ae~~q~e~c~kfe~~s~~~k~eli~fk~rrvaaf~ 368 (399)
T KOG1660|consen 296 DSCAAKDLLYRRERCLADYEAANKNLEKARAKNK-------DVHAAEAAQQEACQKFESISESAKEELIGFKTRRVAAFK 368 (399)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccc-------cchhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3344444455555555666666544444332221 233455556778889999876554444445567899999
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHhhhcc
Q psy5190 246 KQLLLFHNAISAYFSGNEPGLQATLKQFN 274 (292)
Q Consensus 246 ~QL~~~~nAl~ay~sgn~~~Le~tl~~F~ 274 (292)
+.|+-+..-=.....+|.+.|.+++..|+
T Consensus 369 knl~el~eleikhak~~~~ll~~~~~~lk 397 (399)
T KOG1660|consen 369 KNLVELSELEIKHAKTNYSLLRQCLLALK 397 (399)
T ss_pred HhHHHHHHHHHHhhhhhHHHHHHHHHHhh
Confidence 99999988888888899999999887654
No 120
>cd07635 BAR_GRAF2 The Bin/Amphiphysin/Rvs (BAR) domain of GTPase Regulator Associated with Focal adhesion 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. GTPase Regulator Associated with Focal adhesion kinase 2 (GRAF2), also called Rho GTPase activating protein 10 (ARHGAP10) or PS-GAP, is a GAP with activity towards Cdc42 and RhoA which regulates caspase-activated p21-activated protein kinase-2 (PAK-2p34). GRAF2 interacts with PAK-2p34, leading to its stabilization and decrease of cell death. It is highly expressed in skeletal muscle and also interacts with PKNbeta, which is a target of Rho. GRAF2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of the related prote
Probab=69.11 E-value=42 Score=31.05 Aligned_cols=120 Identities=13% Similarity=0.149 Sum_probs=69.3
Q ss_pred hhhhhHhhHHHHHhHHHHHHhHHHhhhhhhhhHH--------HHHHHHHHhhHhHHHHHhhHH-HhhccccCcccccchH
Q psy5190 138 QRNLTGTGEILLNALNLFVSSVNTLCNKTIEDTL--------VTVRQYENARVEYDAYRTDLE-LLLQVTSNVDSNCSHL 208 (292)
Q Consensus 138 qr~m~k~G~~Ll~aL~~f~sdl~Tf~~KAI~DTl--------lTIkkYE~AR~EYdAyrl~le-em~~e~~~~~~~l~r~ 208 (292)
.+.|..-|..+..+-.-|...|+-|-...|+|+. .+++++.++=.|--.++..|- .+. .....||..|
T Consensus 25 c~~~i~a~k~~~~a~~~Fa~~L~~f~~~~~gd~~~dde~~i~~sl~ef~~~~~el~d~r~~L~~~~~---~~l~~pL~~F 101 (207)
T cd07635 25 GKNLIAATKSLSAAQRKFAHSLRDFKFEFIGDAETDDERCIDASLQEFSNFLKNLEEQREIMALNVT---ETLIKPLERF 101 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 3455556666777777777778888866666653 334444444444333332221 111 1122478888
Q ss_pred HHH-HHHHHHHHHHHHhHHhHHHHHHhh---hcccch--------hHHHHHHHHHHHHHHHHHh
Q psy5190 209 DEA-QRNFQTHRENFEKLRNDVVVKLRF---LDENRI--------KVMHKQLLLFHNAISAYFS 260 (292)
Q Consensus 209 eta-qr~~q~aK~rFdKLR~DV~vKLdL---LdenRv--------kvm~~QL~~~~nAl~ay~s 260 (292)
++- .+.+.+.|.+|||-..|-..-+.= |..+|= +.+...-.-|+.+-..|..
T Consensus 102 ~kedl~~~Ke~KK~FdK~se~~~~Al~K~~~ls~kkk~~e~~EA~~~l~~~r~~F~~~sLdYv~ 165 (207)
T cd07635 102 RKEQLGAVKEEKKKFDKETEKNYSLLEKHLNLSAKKKEPQLQEADVQVEQNRQHFYELSLEYVC 165 (207)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 776 578999999999998887655543 433321 2333444456666666654
No 121
>cd07603 BAR_ACAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) containing an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. Vertebrates contain at least three members, ACAP1, ACAP2, and ACAP3. ACAP1 and ACAP2 are Arf6-specific GAPs, involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration, by mediating Arf6 signaling. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=69.08 E-value=91 Score=28.33 Aligned_cols=123 Identities=20% Similarity=0.307 Sum_probs=62.0
Q ss_pred hhhhhhHhhHHHHHhHHHHHHhHHHhhhhhhhhHH--HHHHHHHHhhHhHHHHHhhHHHhhccccCcccccchHHHH-HH
Q psy5190 137 TQRNLTGTGEILLNALNLFVSSVNTLCNKTIEDTL--VTVRQYENARVEYDAYRTDLELLLQVTSNVDSNCSHLDEA-QR 213 (292)
Q Consensus 137 tqr~m~k~G~~Ll~aL~~f~sdl~Tf~~KAI~DTl--lTIkkYE~AR~EYdAyrl~leem~~e~~~~~~~l~r~eta-qr 213 (292)
.-+.|...|..+..+-.-|...|+.|...-+.|.. .+++++-++=-|--+|+.-+ +++.......||..|.+. .+
T Consensus 24 ~~~~~~~ag~~~~~a~~~F~~~L~~~~~~~~~d~~i~~~l~kF~~~l~el~~~~~~L--~~q~~~~i~~pL~~F~k~dL~ 101 (200)
T cd07603 24 LCNGMVDSGKTYVNANSLFVNSLNDLSDYFRDDSLVQNCLNKFIQALQEMNNFHTIL--LDQAQRTVSTQLQNFVKEDIK 101 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhH
Confidence 34455556666666666666666666655555542 12222222222222222221 111111112366777766 46
Q ss_pred HHHHHHHHHHhHHhHHHHHHhh---hcccch-------hHHHHHHHHHHHHHHHHHhc
Q psy5190 214 NFQTHRENFEKLRNDVVVKLRF---LDENRI-------KVMHKQLLLFHNAISAYFSG 261 (292)
Q Consensus 214 ~~q~aK~rFdKLR~DV~vKLdL---LdenRv-------kvm~~QL~~~~nAl~ay~sg 261 (292)
.+.++|.+|||--.|-...+.= +.-+|- +.+...=..|+.+...|...
T Consensus 102 ~vKE~kk~Fdk~s~~yd~al~k~~~~~K~K~~~~~Ea~~~L~~~Rk~f~~~sldyv~~ 159 (200)
T cd07603 102 KVKESKKHFEKISDDLDNALVKNAQAPRSKPQEAEEATNILTATRSCFRHTALDYVLQ 159 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788888888877766555542 222221 23444555666666666553
No 122
>cd07643 I-BAR_IMD_MIM Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Missing In Metastasis. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. Members of this subfamily include missing in metastasis (MIM) or metastasis suppressor 1 (MTSS1), metastasis suppressor 1-like (MTSSL) or ABBA (Actin-Bundling protein with BAIAP2 homology), and similar proteins. They contain an N-terminal IMD and a WASP homology 2 (WH2) actin-binding motif at the C-terminus. MIM was originally identified as a missing transcript from metastatic bladder and prostate cancer cells. It is a scaffold protein that functions in a signaling pathway between the PDGF receptor, Src kinases, and actin assembly. It may also function as a cofactor of the Sonic hedgehog (Shh) transcriptional pathway and may participate in tumor development and progression via this pathway. ABBA regulate
Probab=67.83 E-value=1.1e+02 Score=28.94 Aligned_cols=89 Identities=12% Similarity=0.178 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHHHHhh---cCh----hhHHHHhhchhhhhhhhHhhHHHHHhHHHHHHhHHHhhhhhhhhHHHHHHHH
Q psy5190 105 VIFFLQQTLGEAFADLAQ---KSP----ELQEEFLCNSETQRNLTGTGEILLNALNLFVSSVNTLCNKTIEDTLVTVRQY 177 (292)
Q Consensus 105 ~l~qtq~~lgd~F~~Ls~---kEp----eL~~eF~~naetqr~m~k~G~~Ll~aL~~f~sdl~Tf~~KAI~DTllTIkkY 177 (292)
.++++..+|.|+|+.+|. ..+ +++.....-++.||.++.+-...-++ |..++-+=+.+.|+|=.-+|.++
T Consensus 40 a~~~A~~~f~Da~qKvad~A~~s~GaSkElG~~Ltri~~~hr~iE~~lk~f~~~---L~~~lI~pLe~k~E~wkk~~~~l 116 (231)
T cd07643 40 ATIVATSAFLDAFQKIADAATNTRGATKEIGSALTRMCMRHKSIETKLKQFTSA---LMDCLVNPLQEKIEEWKKVANQL 116 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhHHHHHHHHHHHHHHHHH
Confidence 688899999999976654 332 58888888888898876553333322 23333666778899988889777
Q ss_pred HHh-hHhHHHHHhhHHHhhc
Q psy5190 178 ENA-RVEYDAYRTDLELLLQ 196 (292)
Q Consensus 178 E~A-R~EYdAyrl~leem~~ 196 (292)
+.- .-||.-.|.+++..+.
T Consensus 117 dKd~~k~~kk~R~elKk~~~ 136 (231)
T cd07643 117 DKDHAKEYKKARQEIKKKSS 136 (231)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 654 5678888888776543
No 123
>cd07638 BAR_ACAP2 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP2 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2), also called centaurin beta-2, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=65.65 E-value=1.1e+02 Score=28.07 Aligned_cols=132 Identities=15% Similarity=0.238 Sum_probs=70.5
Q ss_pred hHHHHhhchhhhhhhhHhhHHHHHhHHHHHHhHHHhhhhhhhhHH--HHHHHHHHhhHhHHHHHhhHHHhhccccCcccc
Q psy5190 127 LQEEFLCNSETQRNLTGTGEILLNALNLFVSSVNTLCNKTIEDTL--VTVRQYENARVEYDAYRTDLELLLQVTSNVDSN 204 (292)
Q Consensus 127 L~~eF~~naetqr~m~k~G~~Ll~aL~~f~sdl~Tf~~KAI~DTl--lTIkkYE~AR~EYdAyrl~leem~~e~~~~~~~ 204 (292)
|...+...-+.-+.|..-|..+..+..-|...|+-|..---.|.. -+++++-++=-|=-.|+..|-+ +.......|
T Consensus 14 Le~~l~Kl~K~~~~~~dag~~~~~a~~~F~~~l~d~~~~~~~De~i~~~l~kF~~~l~ei~~~~~~L~~--q~~~~l~~~ 91 (200)
T cd07638 14 LELKLDKLVKLCIGMIDAGKAFCQANKQFMNGIRDLAQYSSKDAVIETSLTKFSDTLQEMINYHTILFD--QAQRSIKAQ 91 (200)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
Confidence 444455555556667778888888888888888887421111111 1233333333332233322211 111222347
Q ss_pred cchHHHH-HHHHHHHHHHHHhHHhHHH---HHHhhhcccchh-------HHHHHHHHHHHHHHHHHh
Q psy5190 205 CSHLDEA-QRNFQTHRENFEKLRNDVV---VKLRFLDENRIK-------VMHKQLLLFHNAISAYFS 260 (292)
Q Consensus 205 l~r~eta-qr~~q~aK~rFdKLR~DV~---vKLdLLdenRvk-------vm~~QL~~~~nAl~ay~s 260 (292)
|..|++- .+.+.++|.+|||-..+-. .|-==+.-+|-. .+...-..|+.+-..|..
T Consensus 92 L~~F~k~dl~~vke~kk~FdK~s~~~~~aL~K~~~~~k~k~~e~eEa~~~l~~~r~~F~~~~ldYv~ 158 (200)
T cd07638 92 LQTFVKEDLRKFKDAKKQFDKVSEEKENALVKNAQVQRNKQHEVEEATNILTATRKCFRHIALDYVL 158 (200)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHhccCCcCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888776 5789999999999885542 222222222222 344445556666666654
No 124
>PF10455 BAR_2: Bin/amphiphysin/Rvs domain for vesicular trafficking; InterPro: IPR018859 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. This entry identifies several fungal BAR domain proteins, such as Gvp36, that are not found by IPR004148 from INTERPRO [].
Probab=64.20 E-value=1.4e+02 Score=29.05 Aligned_cols=56 Identities=16% Similarity=0.268 Sum_probs=34.4
Q ss_pred HHHHHHHhhHhHHHHHhh--HHHhhccccCcccccchHHHHHHHHHHHHHHHHhHHhHHHH
Q psy5190 173 TVRQYENARVEYDAYRTD--LELLLQVTSNVDSNCSHLDEAQRNFQTHRENFEKLRNDVVV 231 (292)
Q Consensus 173 TIkkYE~AR~EYdAyrl~--leem~~e~~~~~~~l~r~etaqr~~q~aK~rFdKLR~DV~v 231 (292)
+..+-.+||++-|..-.. ...+.... .....++.++++.|+.+|-.||-+|..+-.
T Consensus 160 ~~~~I~~aRL~qD~~I~~~Fn~~l~~~L---n~~~~~a~k~RkkV~~sRL~~D~~R~~~k~ 217 (289)
T PF10455_consen 160 AYEKIAQARLEQDQLIQKEFNKKLQTTL---NTDFKKANKARKKVENSRLQFDAARANLKN 217 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 345556667776665411 11111111 123456667789999999999999998865
No 125
>cd07660 BAR_Arfaptin The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin. The BAR domain of Arfaptin-like proteins, also called the Arfaptin domain, is a dimerization and lipid binding module that can detect and drive membrane curvature. Arfaptins are ubiquitously expressed proteins implicated in mediating cross-talk between Rac, a member of the Rho family GTPases, and Arf (ADP-ribosylation factor) small GTPases. Arfaptins bind to GTP-bound Arf1, Arf5, and Arf6, with strongest binding to GTP-Arf1. Arfaptins also bind to Rac-GTP and Rac-GDP with similar affinities. The Arfs are thought to bind to the same surface as Rac, and their binding is mutually exclusive. Mammals contain at least two isoforms of Arfaptin. Arfaptin 1 has been shown to inhibit the activation of Arf-dependent phospholipase D (PLD) and the secretion of matrix metalloproteinase-9 (MMP-9), an enzyme implicated in cancer invasiveness and metastasis. Arfaptin 2 regulates the aggregation of the protein huntingtin, which is im
Probab=60.30 E-value=1.4e+02 Score=27.55 Aligned_cols=35 Identities=20% Similarity=0.283 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHhhcChhhHHHHhhchhhhh
Q psy5190 105 VIFFLQQTLGEAFADLAQKSPELQEEFLCNSETQR 139 (292)
Q Consensus 105 ~l~qtq~~lgd~F~~Ls~kEpeL~~eF~~naetqr 139 (292)
.++..-+.|...|..+++.+.+|++.|..-|.-..
T Consensus 20 ~ll~~~~~l~~~~~~l~qtq~~Lg~~f~~l~~k~p 54 (201)
T cd07660 20 SVLRLARALASQFYQMLQTQKALGDAFADLSQKSP 54 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCh
Confidence 03556688999999999999999999998875433
No 126
>KOG2856|consensus
Probab=58.71 E-value=94 Score=31.77 Aligned_cols=84 Identities=18% Similarity=0.302 Sum_probs=51.5
Q ss_pred HHHHHHHHHhhHhHHHHHhhHHHhhccccCcc--c-----c----cchHHHHHHHHHHHHHHHHhHHhHH----------
Q psy5190 171 LVTVRQYENARVEYDAYRTDLELLLQVTSNVD--S-----N----CSHLDEAQRNFQTHRENFEKLRNDV---------- 229 (292)
Q Consensus 171 llTIkkYE~AR~EYdAyrl~leem~~e~~~~~--~-----~----l~r~etaqr~~q~aK~rFdKLR~DV---------- 229 (292)
.--++++|+||--|.+.|..=+..-..++.+. . + -+|+++.-..+|..|++|+|-=.++
T Consensus 138 aK~l~evE~ak~~yh~ack~EksA~~re~n~kaDsSvspeq~kKlqdrveK~k~evqktkekYektl~el~~yt~~YmE~ 217 (472)
T KOG2856|consen 138 AKLLKEVEAAKKAYHAACKEEKSALTREQNAKADSSVSPEQLKKLQDRVEKCKQEVQKTKEKYEKTLAELNKYTPVYMED 217 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHH
Confidence 34689999999999999976544332222211 1 2 2566667778888888888865443
Q ss_pred ----HHHHhhhcccchhHHHHHHHHHHHH
Q psy5190 230 ----VVKLRFLDENRIKVMHKQLLLFHNA 254 (292)
Q Consensus 230 ----~vKLdLLdenRvkvm~~QL~~~~nA 254 (292)
-.+-+-+++.|.+.+.--|+..|.-
T Consensus 218 MeqvFe~CQ~fE~~Rl~Ffkeil~~v~~h 246 (472)
T KOG2856|consen 218 MEQVFEQCQQFEEKRLQFFKEILLKVQRH 246 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2333445555555555555555543
No 127
>cd00011 BAR_Arfaptin_like The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin-like proteins, a dimerization module that binds and bends membranes. The BAR domain of Arfaptin-like proteins, also called the Arfaptin domain, is a dimerization, lipid binding and curvature sensing module present in Arfaptins, PICK1, ICA69, and similar proteins. Arfaptins are ubiquitously expressed proteins implicated in mediating cross-talk between Rac, a member of the Rho family GTPases, and Arf (ADP-ribosylation factor) small GTPases. Arfaptins bind to GTP-bound Arf1, Arf5, and Arf6, with strongest binding to GTP-Arf1. Arfaptins also binds to Rac-GTP and Rac-GDP with similar affinities. The Arfs are thought to bind to the same surface as Rac, and their binding is mutually exclusive. Protein Interacting with C Kinase 1 (PICK1) plays a key role in the trafficking of AMPA receptors, which are critical for regulating synaptic strength and may be important in cellular processes involved in learning and memory. Is
Probab=55.86 E-value=1.7e+02 Score=27.05 Aligned_cols=46 Identities=17% Similarity=0.113 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHhhcChhhHHHHhhchh-----hhhhhhHhhHHHHHhH
Q psy5190 107 FFLQQTLGEAFADLAQKSPELQEEFLCNSE-----TQRNLTGTGEILLNAL 152 (292)
Q Consensus 107 ~qtq~~lgd~F~~Ls~kEpeL~~eF~~nae-----tqr~m~k~G~~Ll~aL 152 (292)
+..-+.|..+|++|++.+.+|++.|...|. +++.|..+|+++...-
T Consensus 22 l~~~~~~~~~~~~l~q~q~~lG~~f~~l~~~~~~~a~~~f~~~~~a~r~~~ 72 (203)
T cd00011 22 LQLGRALTAHLYSLSQTQHALGDAFADLSQKDPELAGEEFGYNAEAQKLLC 72 (203)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHH
Confidence 445578999999999999999999988874 3578888998776443
No 128
>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis []. COG7 is required for normal Golgi morphology and trafficking. Mutation in COG7 causes a congenital disorder of glycosylation [].
Probab=54.41 E-value=3.2e+02 Score=29.76 Aligned_cols=115 Identities=17% Similarity=0.290 Sum_probs=83.0
Q ss_pred hhHhhHHHHHhHHHHHHhHHHhhhhhhhhHHH----HHHHHHHhhHhHHHHHhhHHHhhcccc----Ccc---cccchHH
Q psy5190 141 LTGTGEILLNALNLFVSSVNTLCNKTIEDTLV----TVRQYENARVEYDAYRTDLELLLQVTS----NVD---SNCSHLD 209 (292)
Q Consensus 141 m~k~G~~Ll~aL~~f~sdl~Tf~~KAI~DTll----TIkkYE~AR~EYdAyrl~leem~~e~~----~~~---~~l~r~e 209 (292)
+...--.|...|.-+.+|+|.=+..++.+.+. .++..+..|-|=.+-+..|..+..+.. ++. ..|.++.
T Consensus 32 ~d~~ls~l~~kLql~~qe~~~~le~~~~q~l~~~Pr~~~ev~~l~~ea~~L~~~~~~v~~~~~~~e~~t~~s~~~L~~ld 111 (766)
T PF10191_consen 32 ADAHLSSLVMKLQLYSQEVNASLEETSQQALQRVPRVLREVDRLRQEAASLQEQMASVQEEIKAVEQDTAQSMAQLAELD 111 (766)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHH
Confidence 33456688889999999999999999999885 456667777777777777766664422 111 2566777
Q ss_pred HHHHHHHHHHH------HHHhHHhHHHHHHhhhcccchhHHHHHHHHHHHHHHHH
Q psy5190 210 EAQRNFQTHRE------NFEKLRNDVVVKLRFLDENRIKVMHKQLLLFHNAISAY 258 (292)
Q Consensus 210 taqr~~q~aK~------rFdKLR~DV~vKLdLLdenRvkvm~~QL~~~~nAl~ay 258 (292)
+++++.+.++. +...|=.+|- ++|....+..++..|...++.|..+
T Consensus 112 ~vK~rm~~a~~~L~EA~~w~~l~~~v~---~~~~~~d~~~~a~~l~~m~~sL~~l 163 (766)
T PF10191_consen 112 SVKSRMEAARETLQEADNWSTLSAEVD---DLFESGDIAKIADRLAEMQRSLAVL 163 (766)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHH---HHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 77777777665 5566666663 3788888888888888888888874
No 129
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=52.48 E-value=2.9e+02 Score=28.62 Aligned_cols=75 Identities=20% Similarity=0.257 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHhhc----ChhhHHHHhhchhhhhhhhHhhHHHHHhHHHHHHhHHHhhhhhhhhHHHHHHHHHHhh
Q psy5190 106 IFFLQQTLGEAFADLAQK----SPELQEEFLCNSETQRNLTGTGEILLNALNLFVSSVNTLCNKTIEDTLVTVRQYENAR 181 (292)
Q Consensus 106 l~qtq~~lgd~F~~Ls~k----EpeL~~eF~~naetqr~m~k~G~~Ll~aL~~f~sdl~Tf~~KAI~DTllTIkkYE~AR 181 (292)
.-+....++.++..|... ++.+ ...-+.+.+.+..- +-+.+..+...++.... .++|....++.|.+ .
T Consensus 224 ~e~i~~~~~~~~~~L~~~~~~~~~~~---~~~l~~~~~~l~~~---~d~~~~~~~~~l~~~~~-~l~d~~~~l~~~~~-~ 295 (563)
T TIGR00634 224 LEKLRELSQNALAALRGDVDVQEGSL---LEGLGEAQLALASV---IDGSLRELAEQVGNALT-EVEEATRELQNYLD-E 295 (563)
T ss_pred HHHHHHHHHHHHHHHhCCccccccCH---HHHHHHHHHHHHHh---hhHhHHHHHHHHHHHHH-HHHHHHHHHHHHHH-h
Confidence 444445566666666433 1111 22223333444332 44455555555555554 56666666666666 4
Q ss_pred HhHHHHH
Q psy5190 182 VEYDAYR 188 (292)
Q Consensus 182 ~EYdAyr 188 (292)
+|||-.+
T Consensus 296 l~~dp~~ 302 (563)
T TIGR00634 296 LEFDPER 302 (563)
T ss_pred CCCCHHH
Confidence 4555544
No 130
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=52.19 E-value=1.5e+02 Score=25.37 Aligned_cols=42 Identities=19% Similarity=0.332 Sum_probs=19.9
Q ss_pred HhHHHHHhhHHHhhccccCcccccchHHHHHHHHHHHHHHHHhHH
Q psy5190 182 VEYDAYRTDLELLLQVTSNVDSNCSHLDEAQRNFQTHRENFEKLR 226 (292)
Q Consensus 182 ~EYdAyrl~leem~~e~~~~~~~l~r~etaqr~~q~aK~rFdKLR 226 (292)
-||..|+.-++++=..-. .-+..+..++......+++.++|+
T Consensus 96 ~~y~~~~~s~k~~l~~R~---~~~~~~~~~~~~l~~k~~~~~kl~ 137 (218)
T cd07596 96 KEYLRYCQAVKETLDDRA---DALLTLQSLKKDLASKKAQLEKLK 137 (218)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 355566555544321111 122334455566666666666664
No 131
>PRK10869 recombination and repair protein; Provisional
Probab=48.68 E-value=3.4e+02 Score=28.32 Aligned_cols=78 Identities=17% Similarity=0.088 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHhh-cChhhHHHHhhchhhhhhhhHhhHHHHHhHHHHHHhHHHhhhhhhhhHHHHHHHHHHhhHh
Q psy5190 105 VIFFLQQTLGEAFADLAQ-KSPELQEEFLCNSETQRNLTGTGEILLNALNLFVSSVNTLCNKTIEDTLVTVRQYENARVE 183 (292)
Q Consensus 105 ~l~qtq~~lgd~F~~Ls~-kEpeL~~eF~~naetqr~m~k~G~~Ll~aL~~f~sdl~Tf~~KAI~DTllTIkkYE~AR~E 183 (292)
+.-+....++.+...|.. .+.. ....-+.+.+.+.+- ..+-+.+..+...++.... -++|....++.|.+ .+|
T Consensus 219 n~e~i~~~~~~~~~~L~~~~~~~---~~~~l~~~~~~l~~~-~~~d~~~~~~~~~l~~~~~-~l~~~~~~l~~~~~-~~~ 292 (553)
T PRK10869 219 NSGQLLTTSQNALQLLADGEEVN---ILSQLYSAKQLLSEL-IGMDSKLSGVLDMLEEALI-QIQEASDELRHYLD-RLD 292 (553)
T ss_pred HHHHHHHHHHHHHHHhcCCCccc---HHHHHHHHHHHHHHH-hhhCHhHHHHHHHHHHHHH-HHHHHHHHHHHHHh-hcC
Confidence 344445556666666643 2111 122222333333332 2233445555555555555 46666666666665 445
Q ss_pred HHHHH
Q psy5190 184 YDAYR 188 (292)
Q Consensus 184 YdAyr 188 (292)
||-.+
T Consensus 293 ~dp~~ 297 (553)
T PRK10869 293 LDPNR 297 (553)
T ss_pred CCHHH
Confidence 55444
No 132
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l
Probab=48.48 E-value=2.1e+02 Score=25.90 Aligned_cols=53 Identities=11% Similarity=0.018 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHhhcChhhHHHHhhchhhhhhhhH----hhHHHHHhHHHHHHhHH
Q psy5190 108 FLQQTLGEAFADLAQKSPELQEEFLCNSETQRNLTG----TGEILLNALNLFVSSVN 160 (292)
Q Consensus 108 qtq~~lgd~F~~Ls~kEpeL~~eF~~naetqr~m~k----~G~~Ll~aL~~f~sdl~ 160 (292)
.....|.+.|.+-|.-|-+-+..+..-+........ .+-++..+...|+++++
T Consensus 19 ~~~~~l~~f~keRa~iE~eYak~L~kLa~k~~~~~~~~~~~~~s~~~aw~~i~~e~~ 75 (251)
T cd07653 19 DFLERYGKFVKERAAIEQEYAKKLRKLVKKYLPKKKEEDEYSFSSVKAFRSILNEVN 75 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCccccccHHHHHHHHHHHHH
Confidence 345667788888888777744333333221100000 12355566666665554
No 133
>PF06730 FAM92: FAM92 protein; InterPro: IPR009602 This family consists of several eukaryotic sequences of around 270 residues in length. Members of this family are found in mouse, human and Drosophila melanogaster. The function of this family is unknown.
Probab=46.88 E-value=2.5e+02 Score=26.38 Aligned_cols=151 Identities=13% Similarity=0.141 Sum_probs=88.9
Q ss_pred HHHHhh-cChhhHHHHhhchhhhhhhhHhhHHHHHhH-HHHHHhHHHhhhhhhhhHHHHHHHHHHhhHhHHHHHhhHHHh
Q psy5190 117 FADLAQ-KSPELQEEFLCNSETQRNLTGTGEILLNAL-NLFVSSVNTLCNKTIEDTLVTVRQYENARVEYDAYRTDLELL 194 (292)
Q Consensus 117 F~~Ls~-kEpeL~~eF~~naetqr~m~k~G~~Ll~aL-~~f~sdl~Tf~~KAI~DTllTIkkYE~AR~EYdAyrl~leem 194 (292)
+.+.|. +.|++...+..|++.--.+.-.+...+.-| ..+++.|..|- -.+..++.-||....||--=..=+..|+.+
T Consensus 55 l~~yA~~E~~~l~~~L~~fae~la~vqDYRqa~v~RlE~KVv~pL~~Y~-~~cK~~r~elK~~~~ar~kEikq~~~Lekl 133 (219)
T PF06730_consen 55 LQDYANTENPNLKLGLKNFAECLAKVQDYRQAEVERLEAKVVEPLSQYG-TICKHARDELKKFNKARNKEIKQLKQLEKL 133 (219)
T ss_pred HHHHHhcCCccHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333343 556666666666665433333332222111 12233333333 245556666677667765444444555555
Q ss_pred hccccCcccccchHHHHHHHHHHHHHHHHhHHhHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHhcCHHHHHHHhh
Q psy5190 195 LQVTSNVDSNCSHLDEAQRNFQTHRENFEKLRNDVVVKLRFLDENRIKVMHKQLLLFHNAISAYFSGNEPGLQATLK 271 (292)
Q Consensus 195 ~~e~~~~~~~l~r~etaqr~~q~aK~rFdKLR~DV~vKLdLLdenRvkvm~~QL~~~~nAl~ay~sgn~~~Le~tl~ 271 (292)
....+... -.+..+...++.+...-.+--.-+-.-++-++..|++++..-|.-|...=+.||++.-+.+..+-+
T Consensus 134 r~k~psdr---~~isqae~el~kas~~~~rt~~~Lee~i~~FEkqKl~DlK~i~sdFv~iEM~fHaKALEv~T~a~q 207 (219)
T PF06730_consen 134 RQKNPSDR---QIISQAESELQKASVDATRTTKQLEETIDNFEKQKLKDLKKIFSDFVTIEMVFHAKALEVYTAAYQ 207 (219)
T ss_pred HccCCccc---hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54432211 124455555555555555555555678889999999999999999999999999998888877643
No 134
>PF04782 DUF632: Protein of unknown function (DUF632); InterPro: IPR006867 This conserved region contains a leucine zipper-like domain. The proteins are found only in plants and their functions are unknown.
Probab=44.01 E-value=1.9e+02 Score=28.32 Aligned_cols=83 Identities=17% Similarity=0.253 Sum_probs=52.4
Q ss_pred HHHHHHhhHhHHHHHhhHHHhhccccCcccccchHHHH--------------HHHHHHHHHHHHhHHhHHHHHHhhhccc
Q psy5190 174 VRQYENARVEYDAYRTDLELLLQVTSNVDSNCSHLDEA--------------QRNFQTHRENFEKLRNDVVVKLRFLDEN 239 (292)
Q Consensus 174 IkkYE~AR~EYdAyrl~leem~~e~~~~~~~l~r~eta--------------qr~~q~aK~rFdKLR~DV~vKLdLLden 239 (292)
||.-|..|+||+--|..++.++....+. .++++. -+.+...-.+-.|||.+
T Consensus 101 VKa~E~~r~~yeKK~~~Lr~~d~kg~~~----~kidkTra~v~~L~tri~Vaiq~v~siS~~I~kLRDe----------- 165 (312)
T PF04782_consen 101 VKAEEKLRIEYEKKCKQLRKQDAKGADS----SKIDKTRASVKDLHTRIRVAIQSVDSISKRIEKLRDE----------- 165 (312)
T ss_pred HHccHHHHHHHHHHHHHHHHHHhCCccH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------
Confidence 6788999999999999999888655431 233322 23333333444444433
Q ss_pred chhHHHHHHHHHHHHHHHHHhc---CHHHHHHHhhhcc
Q psy5190 240 RIKVMHKQLLLFHNAISAYFSG---NEPGLQATLKQFN 274 (292)
Q Consensus 240 Rvkvm~~QL~~~~nAl~ay~sg---n~~~Le~tl~~F~ 274 (292)
=+.-||.-+..+++.-|.. |++.=..++.+..
T Consensus 166 ---EL~PQL~eLi~Gl~~MWk~M~ecHq~Q~~ii~~~k 200 (312)
T PF04782_consen 166 ---ELYPQLVELIQGLMRMWKSMLECHQKQFQIIQEAK 200 (312)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2456888888887776653 6666556666555
No 135
>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []. The exact function of these proteins is not known.
Probab=34.87 E-value=1.9e+02 Score=24.80 Aligned_cols=43 Identities=9% Similarity=0.298 Sum_probs=31.6
Q ss_pred chHHHHHHHHHHHHHHHHhHHhHHHHHHhhhcccchhHHHHHHHHHHHHHHH
Q psy5190 206 SHLDEAQRNFQTHRENFEKLRNDVVVKLRFLDENRIKVMHKQLLLFHNAISA 257 (292)
Q Consensus 206 ~r~etaqr~~q~aK~rFdKLR~DV~vKLdLLdenRvkvm~~QL~~~~nAl~a 257 (292)
..+..+...+.+.+++|++.-... ++|+.|+++|...|..+-.
T Consensus 63 ~~~~~l~~~~~erqk~~~k~ae~L---------~kv~els~~L~~~~~lL~~ 105 (131)
T PF10158_consen 63 QEIAKLLQQMVERQKRFAKFAEQL---------EKVNELSQQLSRCQSLLNQ 105 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHH
Confidence 345556777888888888876643 4588999999998887654
No 136
>cd07631 BAR_APPL1 The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains. Vertebrates contain two APPL proteins, APPL1 and APPL2. APPL1 interacts with diverse receptors (e.g. NGF receptor TrkA, FSHR, adiponectin receptors) and signaling proteins (e.g. Akt, PI3K), and may function as an adaptor linked to many distinct signaling pathways. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be invo
Probab=34.87 E-value=2.9e+02 Score=25.98 Aligned_cols=31 Identities=19% Similarity=0.225 Sum_probs=23.6
Q ss_pred cccchHHHH-HHHHHHHHHHHHhHHhHHHHHH
Q psy5190 203 SNCSHLDEA-QRNFQTHRENFEKLRNDVVVKL 233 (292)
Q Consensus 203 ~~l~r~eta-qr~~q~aK~rFdKLR~DV~vKL 233 (292)
.||.+|++- .+.+.++|.+|||-..|-..-+
T Consensus 94 ~pL~~F~kedL~~~Ke~KK~FdK~Se~~d~Al 125 (215)
T cd07631 94 FPITQFKERDLKEILTLKEVFQIASNDHDAAI 125 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 477788775 5789999999999888764433
No 137
>KOG0979|consensus
Probab=34.84 E-value=4.9e+02 Score=29.85 Aligned_cols=122 Identities=14% Similarity=0.275 Sum_probs=63.7
Q ss_pred hhcccchhHHHHHHHHHHhCCCCccCch--hh--hHHH--H-------HHHHHHHHHHH--------HHHHHhhcChhhH
Q psy5190 70 KNWGISTYKCTRQIMYEKLGKSTRTVDS--DL--KSRV--L-------VIFFLQQTLGE--------AFADLAQKSPELQ 128 (292)
Q Consensus 70 k~W~~~tyk~TKQ~l~EklGk~~~TvD~--EL--eakI--l-------~l~qtq~~lgd--------~F~~Ls~kEpeL~ 128 (292)
.+|.|+.+-||+-.|.+..|+=..-+|- .+ +.|+ | -|..|.++.|+ .+-+|..++.+|.
T Consensus 115 S~y~iN~~a~t~s~i~elv~~fNIQi~NLCqFLpQDkV~EFa~L~pi~LL~eTekAig~~~ll~~h~eL~~lr~~e~~Le 194 (1072)
T KOG0979|consen 115 SKYFINDSATTKSEIEELVAHFNIQIDNLCQFLPQDKVKEFARLSPIELLVETEKAIGAEELLQYHIELMDLREDEKSLE 194 (1072)
T ss_pred cceeeccchhhhHHHHHHHHHHhcccCchhhhccHHHHHHHHcCChHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHH
Confidence 5799999999999988887544332220 00 0011 1 13344443221 1334444555565
Q ss_pred HHHhhchhhhhhhhHhhHHHHHhHHHHHHhHHHhhhhhhhhHH-------HHHHHHHHhhHhHHHHHhhHHHhhccc
Q psy5190 129 EEFLCNSETQRNLTGTGEILLNALNLFVSSVNTLCNKTIEDTL-------VTVRQYENARVEYDAYRTDLELLLQVT 198 (292)
Q Consensus 129 ~eF~~naetqr~m~k~G~~Ll~aL~~f~sdl~Tf~~KAI~DTl-------lTIkkYE~AR~EYdAyrl~leem~~e~ 198 (292)
..+...+++-..|..- ...+-.||+-|+.+---=+. .-+=.|++-+-||-+|...++-+..+.
T Consensus 195 ~~~~~~~~~l~~L~~~-------~~~l~kdVE~~rer~~~~~~Ie~l~~k~~~v~y~~~~~ey~~~k~~~~r~k~~~ 264 (1072)
T KOG0979|consen 195 DKLTTKTEKLNRLEDE-------IDKLEKDVERVRERERKKSKIELLEKKKKWVEYKKHDREYNAYKQAKDRAKKEL 264 (1072)
T ss_pred HHHHHhHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHhhhHHHHHHHHHHHHHHHHH
Confidence 5555555554444433 33444555555554322111 223357777788888877766665443
No 138
>cd07644 I-BAR_IMD_BAIAP2L2 Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 2. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. This group is composed of uncharacterized proteins known as BAIAP2L2 (Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 2). They contain an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus. The related proteins, BAIAP2L1 and IRSp53, function as regulators of membrane dynamics and the actin cytoskeleton. The IMD domain binds and bundles actin filaments, binds membranes and produces membrane protrusions, and interacts with the small GTPase Rac.
Probab=34.09 E-value=4.1e+02 Score=25.06 Aligned_cols=153 Identities=20% Similarity=0.224 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHHHHHHhhc---Ch---hhHHHHhhchhhhhhhhHhhHHHHHhHHHHHHhHHHhhhhhhh-hHH---HHH
Q psy5190 105 VIFFLQQTLGEAFADLAQK---SP---ELQEEFLCNSETQRNLTGTGEILLNALNLFVSSVNTLCNKTIE-DTL---VTV 174 (292)
Q Consensus 105 ~l~qtq~~lgd~F~~Ls~k---Ep---eL~~eF~~naetqr~m~k~G~~Ll~aL~~f~sdl~Tf~~KAI~-DTl---lTI 174 (292)
.++.+.++|.++++.||.. ++ +|++.+-.-+++||-+..+ |-..|+.|+.||-+=+.+-.+ |+. .|.
T Consensus 38 a~t~aa~~Yf~Al~KiGe~A~~s~~s~~LG~vLmqisev~r~i~~~---le~~lk~FH~ell~~LEkk~elD~kyi~~s~ 114 (215)
T cd07644 38 ALSEAAEVYFSAIAKIGEQALQSLTSQSLGEILIQMSETQRKLSAD---LEVVFQTFHVDLLQHMDKNTKLDMQFIEDSR 114 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 6888999999999888763 33 4888888889999988754 555678888888776655433 554 467
Q ss_pred HHHHHhhHhHHHHH-------hhHHHhhccccCcccccchHHHHHHHHHHHHHHHHhHHhHHHHHHhhhcccchhHHHHH
Q psy5190 175 RQYENARVEYDAYR-------TDLELLLQVTSNVDSNCSHLDEAQRNFQTHRENFEKLRNDVVVKLRFLDENRIKVMHKQ 247 (292)
Q Consensus 175 kkYE~AR~EYdAyr-------l~leem~~e~~~~~~~l~r~etaqr~~q~aK~rFdKLR~DV~vKLdLLdenRvkvm~~Q 247 (292)
|+|+. ||+.=- .+++.|.-..+. .+ + +...+++.-+..-+..=.|-+-.-.+.+..|+-.+..-
T Consensus 115 KkYq~---E~r~k~dsleK~~selkk~rrk~qk--n~-~---e~kE~~~~lq~~~~~f~~~~~k~Al~eErRRy~Flvek 185 (215)
T cd07644 115 RVYEL---EYRHRAANLEKCMSELWRMERQRDR--NV-R---EMKENVNRLRQSMQAFLKESQRAAELEEKRRYRFLAEK 185 (215)
T ss_pred HHHHH---HHHHhhhhHHHHHHHHHHHHHhhcC--Cc-h---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77764 333211 112222111110 01 1 11112222223333334444445556666778888888
Q ss_pred HHHHHHHHHHHHhcCHHHHHHH
Q psy5190 248 LLLFHNAISAYFSGNEPGLQAT 269 (292)
Q Consensus 248 L~~~~nAl~ay~sgn~~~Le~t 269 (292)
...+.+..++|++.-...|++-
T Consensus 186 ~c~~~k~~~~yh~ka~~ll~~k 207 (215)
T cd07644 186 HYLLNNTFLQFQSRARGMLQTR 207 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 8899999999999877777664
No 139
>cd07307 BAR The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Mutations in BAR containing proteins have been linked to diseases and their inactivation in cells leads to altered membrane dynamics. A BAR domain with an additional N-terminal amphipathic helix (an N-BAR) can drive membrane curvature. These N-BAR domains are found in amphiphysins and endophilins, among others. BAR domains are also frequently found alongside domains that determine lipid specificity, such as the Pleckstrin Homology (PH) and Phox Homology (PX) domains which are present in beta centaurins (ACAPs and ASAPs) and sorting nexins, respectively. A FES-CIP4 Homology (FCH) domain together with a coiled coil region is called the F-
Probab=33.94 E-value=2.6e+02 Score=22.74 Aligned_cols=32 Identities=13% Similarity=0.142 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHhhcChhhHHHHhhchh
Q psy5190 105 VIFFLQQTLGEAFADLAQKSPELQEEFLCNSE 136 (292)
Q Consensus 105 ~l~qtq~~lgd~F~~Ls~kEpeL~~eF~~nae 136 (292)
.+++.-+.+-++...+....-.+++.|...|.
T Consensus 11 kl~k~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 42 (194)
T cd07307 11 KLIKDTKKLLDSLKELPAAAEKLSEALQELGK 42 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45555566666666555555556655555543
No 140
>PLN02939 transferase, transferring glycosyl groups
Probab=32.69 E-value=1.1e+02 Score=34.66 Aligned_cols=32 Identities=22% Similarity=0.402 Sum_probs=22.8
Q ss_pred HHHhhhcc---cchhHHHHHHHHHHHHHHHHHhcC
Q psy5190 231 VKLRFLDE---NRIKVMHKQLLLFHNAISAYFSGN 262 (292)
Q Consensus 231 vKLdLLde---nRvkvm~~QL~~~~nAl~ay~sgn 262 (292)
+|+++|++ .+..-|+.|+.+|+..+-.|...-
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (977)
T PLN02939 358 QKLKLLEERLQASDHEIHSYIQLYQESIKEFQDTL 392 (977)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777764 345667888888888888876543
No 141
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=32.27 E-value=1.2e+02 Score=26.97 Aligned_cols=26 Identities=15% Similarity=0.316 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHhhh
Q psy5190 247 QLLLFHNAISAYFSGNEPGLQATLKQ 272 (292)
Q Consensus 247 QL~~~~nAl~ay~sgn~~~Le~tl~~ 272 (292)
+|..=.+.++.|.+|+-..+...+..
T Consensus 126 ~l~sqi~vvl~yL~~dl~~v~~~~e~ 151 (159)
T PF05384_consen 126 NLVSQIGVVLNYLSGDLQQVSEQIED 151 (159)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 45555667788999988887766544
No 142
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=30.75 E-value=2.4e+02 Score=24.65 Aligned_cols=24 Identities=17% Similarity=0.184 Sum_probs=16.4
Q ss_pred HHHHHhhHhHHHHHhhHHHhhccc
Q psy5190 175 RQYENARVEYDAYRTDLELLLQVT 198 (292)
Q Consensus 175 kkYE~AR~EYdAyrl~leem~~e~ 198 (292)
.+|..+.-||+.|...+++.+...
T Consensus 20 ~~~~~~~~e~~~~k~ql~~~d~~i 43 (155)
T PF06810_consen 20 AKVDKVKEERDNLKTQLKEADKQI 43 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666778888887777766443
No 143
>KOG3156|consensus
Probab=27.37 E-value=5.4e+02 Score=24.35 Aligned_cols=23 Identities=9% Similarity=0.029 Sum_probs=11.4
Q ss_pred hhhhHhhHHHHHhHHHHHHhHHH
Q psy5190 139 RNLTGTGEILLNALNLFVSSVNT 161 (292)
Q Consensus 139 r~m~k~G~~Ll~aL~~f~sdl~T 161 (292)
..=.++.+++..++.-++.|--+
T Consensus 58 Gf~~kQAETIt~aiT~v~ndsl~ 80 (220)
T KOG3156|consen 58 GFDSKQAETITSAITTVLNDSLE 80 (220)
T ss_pred CCChhhHHHHHHHHHHHHcccHH
Confidence 33334555555555555554433
No 144
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=27.10 E-value=7.6e+02 Score=26.01 Aligned_cols=79 Identities=15% Similarity=0.225 Sum_probs=37.4
Q ss_pred HhHHHHHHhHHHhhhhhhhhH--HHHHHHHHHhhHhHHHHHhhHHHhhccccCcccccchHHHHHHHHHHHHHHHHhHHh
Q psy5190 150 NALNLFVSSVNTLCNKTIEDT--LVTVRQYENARVEYDAYRTDLELLLQVTSNVDSNCSHLDEAQRNFQTHRENFEKLRN 227 (292)
Q Consensus 150 ~aL~~f~sdl~Tf~~KAI~DT--llTIkkYE~AR~EYdAyrl~leem~~e~~~~~~~l~r~etaqr~~q~aK~rFdKLR~ 227 (292)
..+..+..|++.|..+--... ..-.++++..+-|+...-...+++..+... -...++.++..++..+.+|.....
T Consensus 182 ~~~~~L~~dl~~~~~~~~~~~~~~~~~~~~~~le~el~~l~~~~e~l~~~i~~---l~~ele~a~~~l~~l~~~~~~~GG 258 (650)
T TIGR03185 182 DLIDRLAGDLTNVLRRRKKSELPSSILSEIEALEAELKEQSEKYEDLAQEIAH---LRNELEEAQRSLESLEKKFRSEGG 258 (650)
T ss_pred HHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 346667777777665421111 112345555555555555555554433221 112334445555555555555444
Q ss_pred HHHH
Q psy5190 228 DVVV 231 (292)
Q Consensus 228 DV~v 231 (292)
+...
T Consensus 259 ~~~~ 262 (650)
T TIGR03185 259 DLFE 262 (650)
T ss_pred hHHH
Confidence 4444
No 145
>cd07595 BAR_RhoGAP_Rich-like The Bin/Amphiphysin/Rvs (BAR) domain of Rich-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to GAP interacting with CIP4 homologs proteins (Rich). Members contain an N-terminal BAR domain, followed by a Rho GAP domain, and a C-terminal prolin-rich region. Vertebrates harbor at least three Rho GAPs in this subfamily including Rich1, Rich2, and SH3-domain binding protein 1 (SH3BP1). Rich1 and Rich2 play complementary roles in the establishment and maintenance of cell polarity. Rich1 is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. Rich2 is a Rac GAP that interacts with CD317 and plays a role in actin cytoskeleton organization and
Probab=24.31 E-value=6e+02 Score=23.83 Aligned_cols=83 Identities=13% Similarity=0.119 Sum_probs=56.5
Q ss_pred hhHHHHHHHHHHh--------CCCCccCchhhhHHHHHHHHHHHHHHHHHHHHhhcChhhHHHHhhchhhhhhhhHhhHH
Q psy5190 76 TYKCTRQIMYEKL--------GKSTRTVDSDLKSRVLVIFFLQQTLGEAFADLAQKSPELQEEFLCNSETQRNLTGTGEI 147 (292)
Q Consensus 76 tyk~TKQ~l~Ekl--------Gk~~~TvD~ELeakIl~l~qtq~~lgd~F~~Ls~kEpeL~~eF~~naetqr~m~k~G~~ 147 (292)
.|-+.|..+.+.. +.+..+++.|+|..--.+.++...+...+..+-..|++....|..+-++|..+-+....
T Consensus 136 d~D~~k~r~~ka~k~~~~~~~~~K~~~l~eE~e~ae~k~e~~~e~~~~~M~~~l~~E~e~~~~l~~lv~aQl~YH~~a~e 215 (244)
T cd07595 136 DMDSARSRYNAAHKSSGGQGAAAKVDALKDEYEEAELKLEQCRDALATDMYEFLAKEAEIASYLIDLIEAQREYHRTALS 215 (244)
T ss_pred HHHHHHHHHHhccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777777775432 11112445555554456777777777777788888999888899998888888887777
Q ss_pred HHHhHHHHHHh
Q psy5190 148 LLNALNLFVSS 158 (292)
Q Consensus 148 Ll~aL~~f~sd 158 (292)
++..+-+-+.+
T Consensus 216 ~L~~l~~~l~~ 226 (244)
T cd07595 216 VLEAVLPELQE 226 (244)
T ss_pred HHHHHHHHHHH
Confidence 77666555443
No 146
>cd07658 F-BAR_NOSTRIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Nitric Oxide Synthase TRaffic INducer (NOSTRIN). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Nitric Oxide Synthase TRaffic INducer (NOSTRIN) is expressed in endothelial and epithelial cells and is involved in the regulation, trafficking and targeting of endothelial NOS (eNOS). NOSTRIN facilitates the endocytosis of eNOS by coordinating the functions of dynamin and the Wiskott-Aldrich syndrome protein (WASP). Increased expression of NOSTRIN may be correlated to preeclampsia. NOSTRIN contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. The F-BAR domain of NOSTRIN is necessary and sufficient fo
Probab=23.20 E-value=6e+02 Score=23.43 Aligned_cols=17 Identities=12% Similarity=0.132 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHhhcChh
Q psy5190 110 QQTLGEAFADLAQKSPE 126 (292)
Q Consensus 110 q~~lgd~F~~Ls~kEpe 126 (292)
.+.|.+.|.+=|.-|-+
T Consensus 21 ckel~~f~kERa~IE~~ 37 (239)
T cd07658 21 CKELATVLQERAELELN 37 (239)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444455444444443
No 147
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=22.04 E-value=9.2e+02 Score=25.18 Aligned_cols=33 Identities=18% Similarity=0.309 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHhHHhHHHHHHhhhcccchhHHH
Q psy5190 213 RNFQTHRENFEKLRNDVVVKLRFLDENRIKVMH 245 (292)
Q Consensus 213 r~~q~aK~rFdKLR~DV~vKLdLLdenRvkvm~ 245 (292)
..-..||.+-++++.++..=-+.+...+..-+.
T Consensus 407 ~dE~~Ar~~l~~~~~~l~~ikR~lek~nLPGlp 439 (560)
T PF06160_consen 407 KDEKEAREKLQKLKQKLREIKRRLEKSNLPGLP 439 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 344455555555555554444444444444433
No 148
>cd07632 BAR_APPL2 The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains. Vertebrates contain two APPL proteins, APPL1 and APPL2. Both APPL proteins interact with the transcriptional repressor Reptin, acting as activators of beta-catenin/TCF-mediated trancription. APPL2 is essential for cell proliferation. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interac
Probab=21.57 E-value=6.9e+02 Score=23.56 Aligned_cols=58 Identities=16% Similarity=0.126 Sum_probs=36.6
Q ss_pred cccchHHH-HHHHHHHHHHHHHhHHhHHHHHH---hhhcccc---------hhHHHHHHHHHHHHHHHHHh
Q psy5190 203 SNCSHLDE-AQRNFQTHRENFEKLRNDVVVKL---RFLDENR---------IKVMHKQLLLFHNAISAYFS 260 (292)
Q Consensus 203 ~~l~r~et-aqr~~q~aK~rFdKLR~DV~vKL---dLLdenR---------vkvm~~QL~~~~nAl~ay~s 260 (292)
.||..|++ -.+.+.+.|++|||...+-..-| --+..+| +..+...-..|+.+-+.|..
T Consensus 94 ~pL~~F~KeDl~~vKe~KK~FdK~Se~~d~AL~KnaqlskkK~~E~~eae~~~~l~~sRr~F~~~ALdYV~ 164 (215)
T cd07632 94 LPIIQFREKDLTEVSTLKDLFGIASNEHDLSMAKYSRLPKKRENEKVKAEVAKEVAYSRRKQHLSSLQYYC 164 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47777776 46789999999999988864433 2333333 22244455567776666654
No 149
>KOG0933|consensus
Probab=21.48 E-value=3.9e+02 Score=30.74 Aligned_cols=87 Identities=17% Similarity=0.265 Sum_probs=56.1
Q ss_pred hhHHHHHHHHHHhhHhHHHHHhhHHHhhccccCcccccchHHHHHHHHHHHHHHHHhHHhHH---HHHHhhhcccchhHH
Q psy5190 168 EDTLVTVRQYENARVEYDAYRTDLELLLQVTSNVDSNCSHLDEAQRNFQTHRENFEKLRNDV---VVKLRFLDENRIKVM 244 (292)
Q Consensus 168 ~DTllTIkkYE~AR~EYdAyrl~leem~~e~~~~~~~l~r~etaqr~~q~aK~rFdKLR~DV---~vKLdLLdenRvkvm 244 (292)
.|.+.-+..|.+++-||++-..+++++..+..+ .+....+|..|+.+. +-++.|+..+.-+.=
T Consensus 670 a~~L~~l~~l~~~~~~~~~~q~el~~le~eL~~--------------le~~~~kf~~l~~ql~l~~~~l~l~~~r~~~~e 735 (1174)
T KOG0933|consen 670 ADLLRQLQKLKQAQKELRAIQKELEALERELKS--------------LEAQSQKFRDLKQQLELKLHELALLEKRLEQNE 735 (1174)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCh
Confidence 467788999999999999998888777544433 445556666666665 445556666655555
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHH
Q psy5190 245 HKQLLLFHNAISAYFSGNEPGLQA 268 (292)
Q Consensus 245 ~~QL~~~~nAl~ay~sgn~~~Le~ 268 (292)
+|+++.=...+..=...+.+.+..
T Consensus 736 ~~~~~~~~~~~~e~v~e~~~~Ike 759 (1174)
T KOG0933|consen 736 FHKLLDDLKELLEEVEESEQQIKE 759 (1174)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555555544
No 150
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=20.47 E-value=6.7e+02 Score=28.72 Aligned_cols=77 Identities=17% Similarity=0.222 Sum_probs=54.7
Q ss_pred hhhhhhHHHHHHHHHHhhHhHHHHHhhHHHhhcc-c--cCcc-cccchHHHHHHHHHHHHHHHHhHHhHHHHHHhhhccc
Q psy5190 164 NKTIEDTLVTVRQYENARVEYDAYRTDLELLLQV-T--SNVD-SNCSHLDEAQRNFQTHRENFEKLRNDVVVKLRFLDEN 239 (292)
Q Consensus 164 ~KAI~DTllTIkkYE~AR~EYdAyrl~leem~~e-~--~~~~-~~l~r~etaqr~~q~aK~rFdKLR~DV~vKLdLLden 239 (292)
.+.|.+.-..|++=+.-|-+...|..|+++.=.. + .+-. .-...+++..+.++.-+.+|..++.++-.++.-|++.
T Consensus 777 ~~~i~~L~~~l~~ie~~r~~V~eY~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~le~~ 856 (1201)
T PF12128_consen 777 KQEIEQLEKELKRIEERRAEVIEYEDWLQEEWDKVDELREEKPELEEQLRDLEQELQELEQELNQLQKEVKQRRKELEEE 856 (1201)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777888888899999999998875322 1 1100 1223466677888888888888888888888888765
Q ss_pred c
Q psy5190 240 R 240 (292)
Q Consensus 240 R 240 (292)
+
T Consensus 857 ~ 857 (1201)
T PF12128_consen 857 L 857 (1201)
T ss_pred H
Confidence 4
No 151
>KOG2629|consensus
Probab=20.29 E-value=8.4e+02 Score=24.10 Aligned_cols=95 Identities=16% Similarity=0.179 Sum_probs=49.3
Q ss_pred hhhhhhccc----------chhHHHHHHHHHHh-CCCCc---cCchhhhHHHHHHHHHHHHHHHHHHHHhhcCh----hh
Q psy5190 66 IESIKNWGI----------STYKCTRQIMYEKL-GKSTR---TVDSDLKSRVLVIFFLQQTLGEAFADLAQKSP----EL 127 (292)
Q Consensus 66 ~~~~k~W~~----------~tyk~TKQ~l~Ekl-Gk~~~---TvD~ELeakIl~l~qtq~~lgd~F~~Ls~kEp----eL 127 (292)
+-.++.|++ .-|..+|+-|.-.| |.... ..+.+||.+...+.++-..+.+-.+.++++.- |+
T Consensus 80 ~~rwrdy~vmAvi~aGi~y~~y~~~K~YV~P~~l~~~~~k~e~~k~~Ld~~~~~~~~~~~~l~~~va~v~q~~~~qq~El 159 (300)
T KOG2629|consen 80 LRRWRDYFVMAVILAGIAYAAYRFVKSYVLPRFLGESKDKLEADKRQLDDQFDKAAKSLNALMDEVAQVSQLLATQQSEL 159 (300)
T ss_pred hhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777733 37999999999887 55554 56678888774333333333333333333222 22
Q ss_pred HHHHhhchhhhhhhhHhhHHHHHhHHHHHHhHH
Q psy5190 128 QEEFLCNSETQRNLTGTGEILLNALNLFVSSVN 160 (292)
Q Consensus 128 ~~eF~~naetqr~m~k~G~~Ll~aL~~f~sdl~ 160 (292)
..++..-..++-.+..+-+.|-.-++.+-++|-
T Consensus 160 s~~L~~l~~~~~~~s~~~~k~esei~~Ik~lvl 192 (300)
T KOG2629|consen 160 SRALASLKNTLVQLSRNIEKLESEINTIKQLVL 192 (300)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHh
Confidence 222222223333444454555444444444443
Done!