RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5190
(292 letters)
>1i4d_A Arfaptin 2, partner of RAC1; coiled coil, G-protein, complex,
signaling protein; HET: GDP; 2.50A {Homo sapiens} SCOP:
a.238.1.2 PDB: 1i49_A* 1i4l_A* 1i4t_A*
Length = 224
Score = 166 bits (422), Expect = 5e-51
Identities = 107/174 (61%), Positives = 132/174 (75%), Gaps = 1/174 (0%)
Query: 110 QQTLGEAFADLAQKSPELQEEFLCNSETQRNLTGTGEILLNALNLFVSSVNTLCNKTIED 169
Q LG+AFADL+QKSPELQEEF N+ETQ+ L GE LL A+N FVSS+NTL KT+ED
Sbjct: 44 QHALGDAFADLSQKSPELQEEFGYNAETQKLLCKNGETLLGAVNFFVSSINTLVTKTMED 103
Query: 170 TLVTVRQYENARVEYDAYRTDLELLLQVTSNVDSNCSHLDEAQRNFQTHRENFEKLRNDV 229
TL+TV+QYE AR+EYDAYRTDLE L + L+ AQ FQ HR+ +EKLR DV
Sbjct: 104 TLMTVKQYEAARLEYDAYRTDLE-ELSLGPRDAGTRGRLESAQATFQAHRDKYEKLRGDV 162
Query: 230 VVKLRFLDENRIKVMHKQLLLFHNAISAYFSGNEPGLQATLKQFNIKTNKIPSQ 283
+KL+FL+EN+IKVMHKQLLLFHNA+SAYF+GN+ L+ TL+QFNIK ++
Sbjct: 163 AIKLKFLEENKIKVMHKQLLLFHNAVSAYFAGNQKQLEQTLQQFNIKLRPPGAE 216
>1uru_A Amphiphysin; endocytosis, coiled-coil, membrane curvature; 2.6A
{Drosophila melanogaster} SCOP: a.238.1.1
Length = 244
Score = 63.3 bits (153), Expect = 5e-12
Identities = 29/205 (14%), Positives = 64/205 (31%), Gaps = 28/205 (13%)
Query: 80 TRQIMYEKLGKSTRTVDSDLK------------------------SRVLVIFFLQQTLGE 115
++ + + LGK RT D V +TL +
Sbjct: 20 AKEKILQNLGKVDRTADEIFDDHLNNFNRQQASANRLQKEFNNYIRCVRAAQAASKTLMD 79
Query: 116 AFADLAQKSPELQEEFLCNSETQRNLTGTGEILLNALNLFVSSVNTLCNKTIEDTLVTVR 175
+ ++ + + + +L L + + +NT + V
Sbjct: 80 SVCEIYEPQWSGYDALQAQTGASESLWADFAHKLG--DQVLIPLNTYT-GQFPEMKKKVE 136
Query: 176 QYENARVEYDAYRTDLELLLQVTSNVDSNCSHLDEAQRNFQTHRENFEKLRNDVVVKLRF 235
+ ++YD R + LQ +N + L + + + R +E L ++ +L
Sbjct: 137 KRNRKLIDYDGQRHSFQ-NLQANANKRKDDVKLTKGREQLEEARRTYEILNTELHDELPA 195
Query: 236 LDENRIKVMHKQLLLFHNAISAYFS 260
L ++RI + L + +
Sbjct: 196 LYDSRILFLVTNLQTLFATEQVFHN 220
>2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils,
endocytosis/exocytosis, protein complex,
endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A
2rnd_A
Length = 251
Score = 60.2 bits (145), Expect = 7e-11
Identities = 27/205 (13%), Positives = 68/205 (33%), Gaps = 30/205 (14%)
Query: 80 TRQIMYEKLGKSTRTVDSDLK------------------------SRVLVIFFLQQTLGE 115
++ + +KLGK+ T D + + V + + L E
Sbjct: 35 AQEKVLQKLGKADETKDEQFEQCVQNFNKQLTEGTRLQKDLRTYLASVKAMHEASKKLNE 94
Query: 116 AFADLAQKSPELQEEFLCNSETQRNLTGTGEILLNALNLFVSSVNTLCNKTIEDTLVTVR 175
++ + ++E +E L + ++ + +++T + D +
Sbjct: 95 CLQEVYEPDWPGRDEANKIAENNDLL--WMDYHQKLVDQALLTMDTYLGQ-FPDIKSRIA 151
Query: 176 QYENARVEYDAYRTDLELLLQVTSNVDSNCSHLDEAQRNFQTHRENFEKLRNDVVVKLRF 235
+ V+YD+ R E L + + + +A+ ++ FE++ D+ +L
Sbjct: 152 KRGRKLVDYDSARHHYESLQTAKKKDE---AKIAKAEEELIKAQKVFEEMNVDLQEELPS 208
Query: 236 LDENRIKVMHKQLLLFHNAISAYFS 260
L +R+ +
Sbjct: 209 LWNSRVGFYVNTFQSIAGLEENFHK 233
>4a3a_A Amphiphysin; structural genomics, invagination, knobs-IN-holes,
curvature membrane, structural genomics consortium;
1.78A {Homo sapiens} PDB: 4atm_A 3sog_A
Length = 243
Score = 55.9 bits (134), Expect = 2e-09
Identities = 31/205 (15%), Positives = 70/205 (34%), Gaps = 30/205 (14%)
Query: 80 TRQIMYEKLGKSTRTVDSDLKS------------------------RVLVIFFLQQTLGE 115
++ + +KLGK+ T D + + + L E
Sbjct: 21 AQEKVLQKLGKADETKDEQFEEYVQNFKRQEAEGTRLQRELRGYLAAIKGMQEASMKLTE 80
Query: 116 AFADLAQKSPELQEEFLCNSETQRNLTGTGEILLNALNLFVSSVNTLCNKTIEDTLVTVR 175
+ ++ + +E+ E L + ++ + +++T D +
Sbjct: 81 SLHEVYEPDWYGREDVKMVGEKCDVL--WEDFHQKLVDGSLLTLDTYL-GQFPDIKNRIA 137
Query: 176 QYENARVEYDAYRTDLELLLQVTSNVDSNCSHLDEAQRNFQTHRENFEKLRNDVVVKLRF 235
+ V+YD+ R LE L S+ + S + +A+ FQ ++ FE+ D+ +L
Sbjct: 138 KRSRKLVDYDSARHHLEAL---QSSKRKDESRISKAEEEFQKAQKVFEEFNVDLQEELPS 194
Query: 236 LDENRIKVMHKQLLLFHNAISAYFS 260
L R+ + + +
Sbjct: 195 LWSRRVGFYVNTFKNVSSLEAKFHK 219
>4avm_A Bridging integrator 2; protein binding, plasma membrane, BAR
adaptor; 1.91A {Homo sapiens}
Length = 237
Score = 53.3 bits (127), Expect = 1e-08
Identities = 32/205 (15%), Positives = 65/205 (31%), Gaps = 30/205 (14%)
Query: 80 TRQIMYEKLGKSTRTVDSDLK------------------------SRVLVIFFLQQTLGE 115
++ + +KLGK+ T D + S V V+ + + E
Sbjct: 16 AQEKVLQKLGKAVETKDERFEQSASNFYQQQAEGHKLYKDLKNFLSAVKVMHESSKRVSE 75
Query: 116 AFADLAQKSPELQEEFLCNSETQRNLTGTGEILLNALNLFVSSVNTLCNKTIEDTLVTVR 175
++ + EE L E L + V ++ + +
Sbjct: 76 TLQEIYSSEWDGHEELKAIVWNNDLLWEDYEEKLA--DQAVRTMEIYV-AQFSEIKERIA 132
Query: 176 QYENARVEYDAYRTDLELLLQVTSNVDSNCSHLDEAQRNFQTHRENFEKLRNDVVVKLRF 235
+ V+YD+ R LE + + + +A+ F + FE L +++ +L
Sbjct: 133 KRGRKLVDYDSARHHLEAVQNAKKKDE---AKTAKAEEEFNKAQTVFEDLNQELLEELPI 189
Query: 236 LDENRIKVMHKQLLLFHNAISAYFS 260
L +RI N ++
Sbjct: 190 LYNSRIGCYVTIFQNISNLRDVFYR 214
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 50.2 bits (119), Expect = 4e-07
Identities = 52/331 (15%), Positives = 101/331 (30%), Gaps = 90/331 (27%)
Query: 8 AVGEIHEVDLREDYSPVGVNIPPPHPTSLDLSHTMAPMSFPTSPSGNSEGNPKSPVSKI- 66
+ + D+ + + L P NP+ +S I
Sbjct: 280 FLSAATTTHISLDHHSMTLT----PDEVKSLLLKYLDCRPQDLPREVLTTNPRR-LSIIA 334
Query: 67 ESIKNWGISTYKCTRQIMYEKLGKSTRTVDSDLKS----------RVLVIF-----FLQQ 111
ESI++ ++T+ + + +KL T ++S L L +F
Sbjct: 335 ESIRDG-LATWDNWKHVNCDKL---TTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTI 390
Query: 112 TLG-----------EAFAD-LAQKS-------------PELQEEFLCNSETQRNLTGTGE 146
L + L + S P + E E + L
Sbjct: 391 LLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALH---R 447
Query: 147 ILLNALNLFVSSVNTLCNKTIEDT---------LVTVRQYENARVEYDAYRT---DLELL 194
+++ N+ + + D L + E +R D L
Sbjct: 448 SIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPE----RMTLFRMVFLDFRFL 503
Query: 195 LQ----VTSNVDSNCSHLDEAQ--RNFQTH-REN---FEKLRNDVVVKLRFL---DENRI 241
Q ++ +++ S L+ Q + ++ + +N +E+L N + L FL +EN I
Sbjct: 504 EQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAI---LDFLPKIEENLI 560
Query: 242 KVMHKQLLLFHNAISAYFSGNEPGLQATLKQ 272
+ LL A + +E + KQ
Sbjct: 561 CSKYTDLLRI-----ALMAEDEAIFEEAHKQ 586
Score = 47.2 bits (111), Expect = 4e-06
Identities = 48/292 (16%), Positives = 81/292 (27%), Gaps = 100/292 (34%)
Query: 48 PTSPSGNSEGNPKSPVSKIESIKNWG--ISTYKCTRQIMYEKL----------------- 88
PS + + + + + N + Y +R Y KL
Sbjct: 102 QRQPSMMTR----MYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDG 157
Query: 89 ----GKSTRTVDSDLKSRVLV-----IFFLQQTLGEAFADLAQKSPEL---QEEFLC--- 133
GK+ +D L +V IF+L L SPE + L
Sbjct: 158 VLGSGKTWVALDVCLSYKVQCKMDFKIFWL--NLKN------CNSPETVLEMLQKLLYQI 209
Query: 134 ------NSETQRNLTGTGEILLNALNLFVSS---VNTL------CNKTIED-------TL 171
S+ N+ + L + S N L N + L
Sbjct: 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKIL 269
Query: 172 VTVRQYENARVEYDAYRTD---------------LELLLQVTSN---------VDSN--- 204
+T R + A T LLL+ + +N
Sbjct: 270 LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRR 329
Query: 205 CSHLDEAQRNFQTHRENF-----EKLRNDVVVKLRFLDENRIKVMHKQLLLF 251
S + E+ R+ +N+ +KL + L L+ + M +L +F
Sbjct: 330 LSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVF 381
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 47.4 bits (112), Expect = 4e-06
Identities = 37/219 (16%), Positives = 61/219 (27%), Gaps = 80/219 (36%)
Query: 89 GKSTRTV---DSDLKSRVLV---IFFLQQTLGEAF------------ADLAQKSP-ELQE 129
STR + L+ +LV FF+ L E F AD +P EL
Sbjct: 3 AYSTRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVG 62
Query: 130 EFL--CNSETQRNLTG-TGEILLNALNLF-------------VSSVNTLCNKTIEDTLVT 173
+FL +S + + G ++L L F + + + T+ T
Sbjct: 63 KFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKEL 122
Query: 174 VRQYENARV----------------------------------------E----YDAYRT 189
++ Y AR+ E Y Y
Sbjct: 123 IKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHV 182
Query: 190 DLELLLQVTSNVDSNCSHLDEAQRNFQTHRENFEK-LRN 227
+ L++ ++ S T N + L N
Sbjct: 183 LVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLEN 221
Score = 44.7 bits (105), Expect = 3e-05
Identities = 52/339 (15%), Positives = 95/339 (28%), Gaps = 125/339 (36%)
Query: 16 DLREDYSPVGVNIPPPHPTSLDLSHTMAPMSFPTSPSGNSEGNPKSPVSKIESIKNWGIS 75
+LR+ Y DL A + + + ++ +I W
Sbjct: 172 ELRDLY-----QTYHVLVG--DLIKFSAETLSELIRT---TLDAEKVFTQGLNILEW--- 218
Query: 76 TYKCTRQIMYEKLGKSTRTVDSDLKSRVLV----IFFLQQTLGEAFADLAQKSP-ELQEE 130
L + T D D + + I +Q A L +P EL+
Sbjct: 219 ------------LENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSY 266
Query: 131 FLCNSETQRNLTGTGEILLNALNLFVSSVNTLCNKTIEDTLVTVRQYENAR--VEY---- 184
+ TG + L+ A+ ++ ++ ++ + + R +
Sbjct: 267 L-------KGATGHSQGLVTAV--AIAETDS------WESF-----FVSVRKAITVLFFI 306
Query: 185 -----DAY-RTDLELLL------------------------QVTSNVDSNCSHLDEAQR- 213
+AY T L + QV V+ SHL ++
Sbjct: 307 GVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQV 366
Query: 214 -----NFQTHRENF------EKLRNDVVVKLR------FLDENRIK------VMHKQLLL 250
N + N + L + + LR LD++RI + L
Sbjct: 367 EISLVN--GAK-NLVVSGPPQSLYG-LNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLP 422
Query: 251 ----FHNAISAYFSGNEPGLQATLKQFNIKTN----KIP 281
FH S + L + N+ N +IP
Sbjct: 423 VASPFH---SHLLVPASDLINKDLVKNNVSFNAKDIQIP 458
Score = 38.9 bits (90), Expect = 0.002
Identities = 47/296 (15%), Positives = 73/296 (24%), Gaps = 102/296 (34%)
Query: 12 IHEV----DLREDYSPVGVNIPPPHPTSLDL--SHTMAPMSFPTSPSGNSEGNPKSPVSK 65
E DL + S ++ + +H F S NP +
Sbjct: 1626 SQEQGMGMDLYKT-SKAAQDV-------WNRADNHFKDTYGF--SILDIVINNPVNLT-- 1673
Query: 66 IESIKNWGISTYKCTRQIMYEKLGKSTRTVDSDLKSRVLVIFFLQQTLGEAFADLAQKSP 125
I G + + E D K + IF + + E +S
Sbjct: 1674 ---IHFGGEKG-----KRIRENYSAMIFETIVDGKLKTEKIF---KEINEHSTSYTFRSE 1722
Query: 126 ELQEEFLCNSE-TQRNLTGT-------------------------GEILLNALNLFVSSV 159
+ L ++ TQ LT GE AL S
Sbjct: 1723 K---GLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEY--AAL---ASLA 1774
Query: 160 NTLCNKTIEDTLVTVRQ-----------YENARVEYD---------AYRTDLELLLQVTS 199
+ + +IE + V E R Y A E L V
Sbjct: 1775 DVM---SIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVE 1831
Query: 200 NVDSNCSHLDE-AQRNF-----QT----HRENFEKLRNDVVVKLRFLDENRIKVMH 245
V L E N+ Q + + N L F+ +I ++
Sbjct: 1832 RVGKRTGWLVEIV--NYNVENQQYVAAGDLRALDTVTN----VLNFIKLQKIDIIE 1881
>2q12_A DIP13 alpha, DCC-interacting protein 13 alpha; APPL1, BAR domain,
protein transport; 1.79A {Homo sapiens} PDB: 2z0n_A
Length = 265
Score = 36.4 bits (83), Expect = 0.007
Identities = 21/164 (12%), Positives = 50/164 (30%), Gaps = 5/164 (3%)
Query: 111 QTLGEAFADLAQKSPELQEEFLCNSETQRNL-TGTGEILLNALNLFVSSVNTLCNKTIED 169
+ + L + S+ L + + + + + + +++
Sbjct: 66 KEYEKQRFPLGGDDEVMSSTLQQFSKVIDELSSCHAVLSTQLADAMMFPITQFKERDLKE 125
Query: 170 TLVTVRQYENARVEYDAYRTDLELLLQVTSNVDSNCSHLDEAQRNFQTHRENFEKLRNDV 229
L ++ A ++DA L + N E + T R+ +
Sbjct: 126 ILTLKEVFQIASNDHDAAINRYSRLSKKREND----KVKYEVTEDVYTSRKKQHQTMMHY 181
Query: 230 VVKLRFLDENRIKVMHKQLLLFHNAISAYFSGNEPGLQATLKQF 273
L L + + + LL + A ++F L L++F
Sbjct: 182 FCALNTLQYKKKIALLEPLLGYMQAQISFFKMGSENLNEQLEEF 225
>2oxl_A Hypothetical protein YMGB; bacterial protein, biofilm, acid
resistance, DNA binding Pro dimer, gene regulation; HET:
BOG; 1.80A {Escherichia coli}
Length = 64
Score = 30.5 bits (69), Expect = 0.088
Identities = 13/53 (24%), Positives = 27/53 (50%)
Query: 146 EILLNALNLFVSSVNTLCNKTIEDTLVTVRQYENARVEYDAYRTDLELLLQVT 198
+L A+ + S + + NK I +L+ + + ++ D R LE++L+ T
Sbjct: 8 AVLGQAVTNLMLSGDNVNNKNIILSLIHSLETTSDILKADVIRKTLEIVLRYT 60
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.9 bits (66), Expect = 0.48
Identities = 8/37 (21%), Positives = 16/37 (43%), Gaps = 9/37 (24%)
Query: 237 DENRIKVMHKQLLLFHNAISAYFSGNEPGL--QATLK 271
++ +K + L L Y + P L +AT++
Sbjct: 18 EKQALKKLQASLKL-------YADDSAPALAIKATME 47
>3g9g_A Suppressor of yeast profilin deletion; SYP1, BAR domain, FCH,
adaptor, endocytosis, phosphoprotein; 2.40A
{Saccharomyces cerevisiae}
Length = 287
Score = 30.1 bits (67), Expect = 0.81
Identities = 17/133 (12%), Positives = 46/133 (34%), Gaps = 1/133 (0%)
Query: 128 QEEFLCNSETQRNLTGTGEILLNALNLFVSSVNTLCNKTIEDTLVTVRQYENARVEYDAY 187
QE + L + ++ L + S N + + +++ +
Sbjct: 107 QEMSAFRFNSLGELRNVWDTVIEELKSDLKSSTEYYNTLDQQVVRELKESVENNTSWRES 166
Query: 188 RTDLELLLQVTSNVDSNCSHLDEAQRNFQTHRENFEKLRNDVVVKLRFLDENRIKVMHKQ 247
+ L + ++++ S +E + + R +++ + +D NR+ +
Sbjct: 167 KDLHSKLSKNAASIEHY-SKNNENSSHLEEARRQWDQQSPYLFELFETIDYNRLDTLKNC 225
Query: 248 LLLFHNAISAYFS 260
+L F + S Y
Sbjct: 226 MLRFQTSFSDYLL 238
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo
sapiens} PDB: 2qa7_A
Length = 120
Score = 27.8 bits (61), Expect = 1.9
Identities = 11/60 (18%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Query: 175 RQYENARVEYDAYRTDLELLLQVTSNVDSNCSHLDEAQRNFQTHRENFEKLRNDVVVKLR 234
+ A + + R +L+ L + + + L E +R Q + + + KL+ + +L
Sbjct: 61 HLRQQAADDCEFLRAELDELRRQREDTEKAQRSLSEIERKAQANEQRYSKLK-EKYSELV 119
>2rf9_C ERBB receptor feedback inhibitor 1; kinase domain, inhibition,
dimer, peptide, alternative splicing, anti-oncogene,
ATP-binding, cell cycle; 3.50A {Homo sapiens}
Length = 65
Score = 26.8 bits (58), Expect = 2.0
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 28 IPPPHPTSLDLSHTMAPMSFPTSPSG 53
+PP P S S T +P S P+ +G
Sbjct: 10 VPPREPLSPSNSRTPSPKSLPSYLNG 35
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription,
multi-protein complex, DNA- binding, magnesium; 3.65A
{Schizosaccharomyces pombe}
Length = 1752
Score = 28.9 bits (64), Expect = 2.3
Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
Query: 21 YSPVGVNIPPPHPTSLDLSHTMAPMS---FPTSPSGNSEGNPKSPVS 64
YSP + P P+ S + +P S PTSPS + SP S
Sbjct: 1669 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1715
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein
complex, beta-grAsp fold, amino-acid biosynthesis; HET:
PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Length = 93
Score = 27.0 bits (60), Expect = 3.0
Identities = 10/39 (25%), Positives = 15/39 (38%), Gaps = 1/39 (2%)
Query: 112 TLGEAFADLAQKSPELQEEFLCNSETQRNLTGTGEILLN 150
TLG +DL + E L + + L I +N
Sbjct: 27 TLGAVISDLEANYSGISER-LMDPSSPGKLHRFVNIYVN 64
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription,
mRNA, multiprotein complex; HET: UTP; 2.30A
{Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A
1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A*
1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A*
1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ...
Length = 1733
Score = 28.1 bits (62), Expect = 4.7
Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 3/47 (6%)
Query: 21 YSPVGVNIPPPHPTSLDLSHTMAPMS---FPTSPSGNSEGNPKSPVS 64
YSP + P P S + +P S PTSPS + SP S
Sbjct: 1647 YSPTSPSYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1693
>1bt3_A Protein (catechol oxidase); dicopper enzyme, oxidoreductase; 2.50A
{Ipomoea batatas} SCOP: a.86.1.2 PDB: 1bt2_A 1bt1_A
1bug_A*
Length = 345
Score = 27.2 bits (59), Expect = 6.1
Identities = 11/89 (12%), Positives = 28/89 (31%)
Query: 12 IHEVDLREDYSPVGVNIPPPHPTSLDLSHTMAPMSFPTSPSGNSEGNPKSPVSKIESIKN 71
+E L + +P + + ++ TS +S N + +
Sbjct: 124 FYERILGKLIGDPSFGLPFWNWDNPGGMVLPDFLNDSTSSLYDSNRNQSHLPPVVVDLGY 183
Query: 72 WGISTYKCTRQIMYEKLGKSTRTVDSDLK 100
G T +Q + + L + + ++
Sbjct: 184 NGADTDVTDQQRITDNLALMYKQMVTNAG 212
>1ek9_A Outer membrane protein TOLC; integral membrane protein, alpha
helical barrel, beta barrel; 2.10A {Escherichia coli}
SCOP: f.5.1.1 PDB: 1tqq_A 2vde_A 2vdd_A 2wmz_A* 2xmn_A*
Length = 428
Score = 27.4 bits (61), Expect = 6.3
Identities = 11/73 (15%), Positives = 25/73 (34%), Gaps = 6/73 (8%)
Query: 175 RQYENARVEYD---AYRTDLELLLQVTSNVDSNCSHLDEAQRNFQTHRENFEKLRNDVVV 231
RQ + ++ TD+ + D+ ++ A+ N E ++ +
Sbjct: 135 RQLDQTTQRFNVGLVAITDV---QNARAQYDTVLANELTARNNLDNAVEQLRQITGNYYP 191
Query: 232 KLRFLDENRIKVM 244
+L L+ K
Sbjct: 192 ELAALNVENFKTD 204
>2k6v_A Putative cytochrome C oxidase assembly protein; thioredoxin fold,
electron transfer protein, metal binding protein,
electron transport; NMR {Thermus thermophilus}
Length = 172
Score = 26.5 bits (59), Expect = 8.7
Identities = 14/77 (18%), Positives = 29/77 (37%), Gaps = 7/77 (9%)
Query: 222 FEKLRNDVVVKLRFL----DENR--IKVMHKQLLLFHNAISAYFSGNEPGLQATLKQFNI 275
+EKL +++ + D R +V + FH + SG+ ++ + F +
Sbjct: 62 YEKLPPKAQERVQVIFVSVDPERDPPEVADRYAKAFHPSFLG-LSGSPEAVREAAQTFGV 120
Query: 276 KTNKIPSQNSMLYSAEH 292
K + Y +H
Sbjct: 121 FYQKSQYRGPGEYLVDH 137
>3abh_A Pacsin2, protein kinase C and casein kinase substrate in neurons
protein 2; helix bundle, coiled-coil, endocytosis; 2.00A
{Homo sapiens} PDB: 3q0k_A 3lll_A 3hah_A 3qni_A 3hai_A
3q84_A
Length = 312
Score = 26.7 bits (58), Expect = 9.5
Identities = 13/130 (10%), Positives = 40/130 (30%), Gaps = 15/130 (11%)
Query: 175 RQYENARVEYDAYRTDLEL----LLQVTSNVDSNCSHLDEAQRNFQTHRENFEKLRND-- 228
++ + A + D L L ++ ++ + + + ++ + ++
Sbjct: 171 KEEKLAISREANSKADPSLNPEQLKKLQDKIEKCKQDVLKTKEKYEKSLKELDQGTPQYM 230
Query: 229 -----VVVKLRFLDENRIKVMHKQLLLFHNAISAYFSGNEPGLQATLKQFNIKTNKI-PS 282
V + + +E R++ + LL + G +A
Sbjct: 231 ENMEQVFEQCQQFEEKRLRFFREVLLEVQKHLDLSNV---AGYKAIYHDLEQSIRAADAV 287
Query: 283 QNSMLYSAEH 292
++ + A H
Sbjct: 288 EDLRWFRANH 297
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.130 0.367
Gapped
Lambda K H
0.267 0.0496 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,164,888
Number of extensions: 233408
Number of successful extensions: 401
Number of sequences better than 10.0: 1
Number of HSP's gapped: 387
Number of HSP's successfully gapped: 29
Length of query: 292
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 199
Effective length of database: 4,105,140
Effective search space: 816922860
Effective search space used: 816922860
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 57 (26.3 bits)