RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5190
         (292 letters)



>d1i4da_ a.238.1.2 (A:) Arfaptin, Rac-binding fragment {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 200

 Score =  104 bits (261), Expect = 7e-28
 Identities = 99/153 (64%), Positives = 118/153 (77%), Gaps = 1/153 (0%)

Query: 110 QQTLGEAFADLAQKSPELQEEFLCNSETQRNLTGTGEILLNALNLFVSSVNTLCNKTIED 169
           Q  LG+AFADL+QKSPELQEEF  N+ETQ+ L   GE LL A+N FVSS+NTL  KT+ED
Sbjct: 43  QHALGDAFADLSQKSPELQEEFGYNAETQKLLCKNGETLLGAVNFFVSSINTLVTKTMED 102

Query: 170 TLVTVRQYENARVEYDAYRTDLELLLQVTSNVDSNCSHLDEAQRNFQTHRENFEKLRNDV 229
           TL+TV+QYE AR+EYDAYRTDLE L             L+ AQ  FQ HR+ +EKLR DV
Sbjct: 103 TLMTVKQYEAARLEYDAYRTDLEELSL-GPRDAGTRGRLESAQATFQAHRDKYEKLRGDV 161

Query: 230 VVKLRFLDENRIKVMHKQLLLFHNAISAYFSGN 262
            +KL+FL+EN+IKVMHKQLLLFHNA+SAYF+GN
Sbjct: 162 AIKLKFLEENKIKVMHKQLLLFHNAVSAYFAGN 194


>d1urua_ a.238.1.1 (A:) Amphiphysin {Fruit fly (Drosophila
           melanogaster) [TaxId: 7227]}
          Length = 217

 Score = 70.1 bits (171), Expect = 5e-15
 Identities = 26/198 (13%), Positives = 58/198 (29%), Gaps = 28/198 (14%)

Query: 86  EKLGKSTRTVDSDLKSRVLVIFFLQQT------------------------LGEAFADLA 121
           + LGK  RT D      +      Q +                        L ++  ++ 
Sbjct: 1   QNLGKVDRTADEIFDDHLNNFNRQQASANRLQKEFNNYIRCVRAAQAASKTLMDSVCEIY 60

Query: 122 QKSPELQEEFLCNSETQRNLTGTGEILLNALNLFVSSVNTLCNKTIEDTLVTVRQYENAR 181
           +      +     +    +L       L   +  +  +NT       +    V +     
Sbjct: 61  EPQWSGYDALQAQTGASESLWADFAHKLG--DQVLIPLNTYT-GQFPEMKKKVEKRNRKL 117

Query: 182 VEYDAYRTDLELLLQVTSNVDSNCSHLDEAQRNFQTHRENFEKLRNDVVVKLRFLDENRI 241
           ++YD  R   + L    +    +   L + +   +  R  +E L  ++  +L  L ++RI
Sbjct: 118 IDYDGQRHSFQNLQANANKRKDDV-KLTKGREQLEEARRTYEILNTELHDELPALYDSRI 176

Query: 242 KVMHKQLLLFHNAISAYF 259
             +   L         + 
Sbjct: 177 LFLVTNLQTLFATEQVFH 194


>d2b0aa1 c.8.8.1 (A:1-186) Hypothetical protein MJ0783
          {Methanococcus jannaschii [TaxId: 2190]}
          Length = 186

 Score = 25.8 bits (56), Expect = 5.0
 Identities = 6/16 (37%), Positives = 8/16 (50%)

Query: 36 LDLSHTMAPMSFPTSP 51
          LDL+ T+     P  P
Sbjct: 3  LDLTQTLINFPRPGDP 18


>d1pv5a_ d.251.1.1 (A:) Hypothetical protein YwqG {Bacillus subtilis
           [TaxId: 1423]}
          Length = 261

 Score = 25.4 bits (55), Expect = 8.0
 Identities = 12/48 (25%), Positives = 18/48 (37%), Gaps = 5/48 (10%)

Query: 182 VEYDAYRTDLELLLQVTSNVDSNCSHLDEAQRNFQTHRE-----NFEK 224
               AY+    +LLQ+ S+ D +    D    NF    E     +F  
Sbjct: 206 PREYAYKEHTIMLLQIDSDDDIDSMWGDVGIANFFITPEDLRKKDFSN 253


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.314    0.130    0.367 

Gapped
Lambda     K      H
   0.267   0.0662    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,003,228
Number of extensions: 44568
Number of successful extensions: 71
Number of sequences better than 10.0: 1
Number of HSP's gapped: 70
Number of HSP's successfully gapped: 10
Length of query: 292
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 207
Effective length of database: 1,240,546
Effective search space: 256793022
Effective search space used: 256793022
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 52 (23.9 bits)