BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5192
(324 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2KS9|A Chain A, Solution Conformation Of Substance P In Water Complexed
With Nk1r
pdb|2KSA|A Chain A, Substance P In DmpcCHAPS ISOTROPIC Q0.25 BICELLES AS A
LIGAND FOR Nk1r
pdb|2KSB|A Chain A, Substance P In Isotropic Q0.25 DmpcCHAPSGM1 BICELLES AS A
LIGAND For Nk1r
Length = 364
Score = 125 bits (314), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 95/301 (31%), Positives = 136/301 (45%), Gaps = 22/301 (7%)
Query: 28 PTSIIILLSVFYGTISVLAVVGNFLVIWIVATSRRMQNVTNCFIANLALADIVIGLFAIP 87
P I+L + Y I V +VVGN +V+WI+ +RM+ VTN F+ NLA A+ + F
Sbjct: 28 PAWQIVLWAAAYTVIVVTSVVGNVVVMWIILAHKRMRTVTNYFLVNLAFAEASMAAFNTV 87
Query: 88 FQFQAALLQRWNLPNFMCPFCPFVQCXXXXXXXXXXXAIAVDRHRAILNPLSARPSKLRA 147
F A+ W F C F F A+A DR+ AI++PL R S
Sbjct: 88 VNFTYAVHNEWYYGLFYCKFHNFFPIAAVFASIYSMTAVAFDRYMAIIHPLQPRLSATAT 147
Query: 148 KICIFGIWTLSSFLAAPMA-IATGVTMEE------EYTDPAGRIHLKPFCTNIHLSDDTM 200
K+ I IW L+ LA P +T TM E+ + +I+ K
Sbjct: 148 KVVICVIWVLALLLAFPQGYYSTTETMPSRVVCMIEWPEHPNKIYEK------------- 194
Query: 201 ILYRRVLAVVQYAIPLSVISFVYARMALRLWGSKAPGNAQDSRDATXXXXXXXXXXXXXX 260
+Y + V+ Y +PL VI + Y + + LW S+ PG++ D R
Sbjct: 195 -VYHICVTVLIYFLPLLVIGYAYTVVGITLWASEIPGDSSD-RYHEQVSAKRKVVKMMIV 252
Query: 261 XXALFAICWLPLQTYNVLQGIFPSINSYHYINIVFFCCDWLAMSNSCYNPFIYGIYNDKE 320
FAICWLP + +L I P + +I V+ WLAMS++ YNP IY ND+
Sbjct: 253 VVCTFAICWLPFHIFFLLPYINPDLYLKKFIQQVYLAIMWLAMSSTMYNPIIYCCLNDRF 312
Query: 321 R 321
R
Sbjct: 313 R 313
>pdb|4EA3|A Chain A, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A
PEPTIDE Mimetic
pdb|4EA3|B Chain B, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A
PEPTIDE Mimetic
Length = 434
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 78/308 (25%), Positives = 137/308 (44%), Gaps = 30/308 (9%)
Query: 19 EKYLGIYKVPTSIIILLSVFYGTISVLAVVGNFLVIWIVATSRRMQNVTNCFIANLALAD 78
+KYLG + +P + + + Y + V ++GN LV++++ +M+ TN +I NLALAD
Sbjct: 113 QKYLGAF-LPLGLKVTIVGLYLAVCVGGLLGNCLVMYVILRHTKMKTATNIYIFNLALAD 171
Query: 79 IVIGLFAIPFQFQAALLQRWNLPNFMCPFCPFVQCXXXXXXXXXXXAIAVDRHRAILNPL 138
++ L +PFQ LL W N +C + A++VDR+ AI +P+
Sbjct: 172 TLV-LLTLPFQGTDILLGFWPFGNALCKTVIAIDYYNMFTSTFTLTAMSVDRYVAICHPI 230
Query: 139 SARPSKL--RAKICIFGIWTLSSFLAAPMAIATGVTMEEEYTD-----PAGRIHLKPFCT 191
A + +A+ IW L+S + P+AI +E+E + P + + P
Sbjct: 231 RALDVRTSSKAQAVNVAIWALASVVGVPVAIMGSAQVEDEEIECLVEIPTPQDYWGP--- 287
Query: 192 NIHLSDDTMILYRRVLAVVQYAIPLSVISFVYARMALRLWGSK-APGNAQDSRDATXXXX 250
++ + + + +P+ VIS Y+ M RL G + G+ + R+
Sbjct: 288 ----------VFAICIFLFSFIVPVLVISVCYSLMIRRLRGVRLLSGSREKDRNLRRITR 337
Query: 251 XXXXXXXXXXXXALFAICWLPLQTYNVLQGIFPSINSYHYINIVFFCCDWLAMSNSCYNP 310
CW P+Q + + QG+ +S + I+ FC L NSC NP
Sbjct: 338 LVLVVVAVFVG------CWTPVQVFVLAQGLGVQPSSETAVAILRFCT-ALGYVNSCLNP 390
Query: 311 FIYGIYND 318
+Y ++
Sbjct: 391 ILYAFLDE 398
>pdb|4GBR|A Chain A, N-terminal T4 Lysozyme Fusion Facilitates Crystallization
Of A G Protein Coupled Receptor
Length = 309
Score = 91.3 bits (225), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 76/276 (27%), Positives = 116/276 (42%), Gaps = 27/276 (9%)
Query: 44 VLAVV-GNFLVIWIVATSRRMQNVTNCFIANLALADIVIGLFAIPFQFQAALLQRWNLPN 102
VLA+V GN LVI +A R+Q VTN FI +LA AD+V+GL +PF L + W N
Sbjct: 16 VLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILTKTWTFGN 75
Query: 103 FMCPFCPFVQCXXXXXXXXXXXAIAVDRHRAILNPLSARP--SKLRAKICIFGIWT---L 157
F C F + IAVDR+ AI +P + +K +A++ I +W L
Sbjct: 76 FWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGL 135
Query: 158 SSFLAAPMAIATGVTMEEEYTDPAGRIHLKPFCTNIHLSDDTMILYRRVLAVVQYAIPLS 217
+SFL M E A + + C + + Y ++V + +PL
Sbjct: 136 TSFLPIQMHWYRATHQE------AINCYAEETCCDFFTNQA----YAIASSIVSFYVPLV 185
Query: 218 VISFVYARMALRLWGSKAPGNAQDSRDATXXXXXXXXXXXXXXXXALFAICWLPLQTYNV 277
++ FVY+R+ Q + F +CWLP N+
Sbjct: 186 IMVFVYSRVF-------QEAKRQLQKIDKFCLKEHKALKTLGIIMGTFTLCWLPFFIVNI 238
Query: 278 LQGIFPSINSYHYINIVFFCCDWLAMSNSCYNPFIY 313
+ I ++ V+ +W+ NS +NP IY
Sbjct: 239 VHVIQDNLIRKE----VYILLNWIGYVNSGFNPLIY 270
>pdb|3SN6|R Chain R, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 514
Score = 88.6 bits (218), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 83/297 (27%), Positives = 123/297 (41%), Gaps = 41/297 (13%)
Query: 44 VLAVV-GNFLVIWIVATSRRMQNVTNCFIANLALADIVIGLFAIPFQFQAALLQRWNLPN 102
VLA+V GN LVI +A R+Q VTN FI +LA AD+V+GL +PF L + W N
Sbjct: 193 VLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILTKTWTFGN 252
Query: 103 FMCPFCPFVQCXXXXXXXXXXXAIAVDRHRAILNPLSARP--SKLRAKICIFGIW---TL 157
F C F + IAVDR+ AI +P + +K +A++ I +W L
Sbjct: 253 FWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGL 312
Query: 158 SSFLAAPMAIATGVTMEEEYTDPAGRIHLKPFCTNIHLSDDTMILYRRVLAVVQYAIPLS 217
+SFL M E A + + C + T Y ++V + +PL
Sbjct: 313 TSFLPIQMHWYRATHQE------AINCYAEETCCDFF----TNQAYAIASSIVSFYVPLV 362
Query: 218 VISFVYARM---ALRLWG--SKAPGN---------AQDS-------RDATXXXXXXXXXX 256
++ FVY+R+ A R K+ G QD R +
Sbjct: 363 IMVFVYSRVFQEAKRQLQKIDKSEGRFHVQNLSQVEQDGRTGHGLRRSSKFCLKEHKALK 422
Query: 257 XXXXXXALFAICWLPLQTYNVLQGIFPSINSYHYINIVFFCCDWLAMSNSCYNPFIY 313
F +CWLP N++ I ++ V+ +W+ NS +NP IY
Sbjct: 423 TLGIIMGTFTLCWLPFFIVNIVHVIQDNLIRKE----VYILLNWIGYVNSGFNPLIY 475
>pdb|3KJ6|A Chain A, Crystal Structure Of A Methylated Beta2 Adrenergic
Receptor- Fab Complex
Length = 366
Score = 88.2 bits (217), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 82/297 (27%), Positives = 124/297 (41%), Gaps = 41/297 (13%)
Query: 44 VLAVV-GNFLVIWIVATSRRMQNVTNCFIANLALADIVIGLFAIPFQFQAALLQRWNLPN 102
VLA+V GN LVI +A R+Q VTN FI +LA AD+V+GL +PF L++ W N
Sbjct: 45 VLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGN 104
Query: 103 FMCPFCPFVQCXXXXXXXXXXXAIAVDRHRAILNPLSARP--SKLRAKICIFGIW---TL 157
F C F + IAVDR+ AI +P + +K +A++ I +W L
Sbjct: 105 FWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGL 164
Query: 158 SSFLAAPMAIATGVTMEEEYTDPAGRIHLKPFCTNIHLSDDTMILYRRVLAVVQYAIPLS 217
+SFL M E A + + C + + Y ++V + +PL
Sbjct: 165 TSFLPIQMHWYRATHQE------AINCYAEETCCDFFTNQA----YAIASSIVSFYVPLV 214
Query: 218 VISFVYARM---ALRLWG--SKAPGN---------AQDS-------RDATXXXXXXXXXX 256
++ FVY+R+ A R K+ G QD R +
Sbjct: 215 IMVFVYSRVFQEAKRQLQKIDKSEGRFHVQNLSQVEQDGRTGHGLRRSSKFCLKEHKALK 274
Query: 257 XXXXXXALFAICWLPLQTYNVLQGIFPSINSYHYINIVFFCCDWLAMSNSCYNPFIY 313
F +CWLP N++ I ++ V+ +W+ NS +NP IY
Sbjct: 275 TLGIIMGTFTLCWLPFFIVNIVHVIQDNLIRKE----VYILLNWIGYVNSGFNPLIY 327
>pdb|2R4S|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor
Length = 342
Score = 88.2 bits (217), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 83/297 (27%), Positives = 125/297 (42%), Gaps = 41/297 (13%)
Query: 44 VLAVV-GNFLVIWIVATSRRMQNVTNCFIANLALADIVIGLFAIPFQFQAALLQRWNLPN 102
VLA+V GN LVI +A R+Q VTN FI +LA AD+V+GL +PF L++ W N
Sbjct: 21 VLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGN 80
Query: 103 FMCPFCPFVQCXXXXXXXXXXXAIAVDRHRAILNPLSARP--SKLRAKICIFGIWT---L 157
F C F + IAVDR+ AI +P + +K +A++ I +W L
Sbjct: 81 FWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGL 140
Query: 158 SSFLAAPMAIATGVTMEEEYTDPAGRIHLKPFCTNIHLSDDTMILYRRVLAVVQYAIPLS 217
+SFL P+ + +E + F TN Y ++V + +PL
Sbjct: 141 TSFL--PIQMHWYRATHQEAINCYANETCCDFFTN--------QAYAIASSIVSFYVPLV 190
Query: 218 VISFVYARM---ALRLWG--SKAPGN---------AQDS-------RDATXXXXXXXXXX 256
++ FVY+R+ A R K+ G QD R +
Sbjct: 191 IMVFVYSRVFQEAKRQLQKIDKSEGRFHVQNLSQVEQDGRTGHGLRRSSKFCLKEHKALK 250
Query: 257 XXXXXXALFAICWLPLQTYNVLQGIFPSINSYHYINIVFFCCDWLAMSNSCYNPFIY 313
F +CWLP N++ I ++ V+ +W+ NS +NP IY
Sbjct: 251 TLGIIMGTFTLCWLPFFIVNIVHVIQDNLIRKE----VYILLNWIGYVNSGFNPLIY 303
>pdb|2R4R|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor
Length = 365
Score = 87.8 bits (216), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 83/297 (27%), Positives = 125/297 (42%), Gaps = 41/297 (13%)
Query: 44 VLAVV-GNFLVIWIVATSRRMQNVTNCFIANLALADIVIGLFAIPFQFQAALLQRWNLPN 102
VLA+V GN LVI +A R+Q VTN FI +LA AD+V+GL +PF L++ W N
Sbjct: 44 VLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGN 103
Query: 103 FMCPFCPFVQCXXXXXXXXXXXAIAVDRHRAILNPLSARP--SKLRAKICIFGIW---TL 157
F C F + IAVDR+ AI +P + +K +A++ I +W L
Sbjct: 104 FWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGL 163
Query: 158 SSFLAAPMAIATGVTMEEEYTDPAGRIHLKPFCTNIHLSDDTMILYRRVLAVVQYAIPLS 217
+SFL P+ + +E + F TN Y ++V + +PL
Sbjct: 164 TSFL--PIQMHWYRATHQEAINCYANETCCDFFTN--------QAYAIASSIVSFYVPLV 213
Query: 218 VISFVYARM---ALRLWG--SKAPGN---------AQDS-------RDATXXXXXXXXXX 256
++ FVY+R+ A R K+ G QD R +
Sbjct: 214 IMVFVYSRVFQEAKRQLQKIDKSEGRFHVQNLSQVEQDGRTGHGLRRSSKFCLKEHKALK 273
Query: 257 XXXXXXALFAICWLPLQTYNVLQGIFPSINSYHYINIVFFCCDWLAMSNSCYNPFIY 313
F +CWLP N++ I ++ V+ +W+ NS +NP IY
Sbjct: 274 TLGIIMGTFTLCWLPFFIVNIVHVIQDNLIRKE----VYILLNWIGYVNSGFNPLIY 326
>pdb|2VT4|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|C Chain C, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|D Chain D, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2YCW|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Carazolol
pdb|2YCW|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Carazolol
pdb|2YCX|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCX|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCZ|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Iodocyanopindolol
pdb|2YCZ|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Iodocyanopindolol
pdb|2YCY|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCY|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|4GPO|A Chain A, Oligomeic Turkey Beta1-adrenergic G Protein-coupled
Receptor
pdb|4GPO|B Chain B, Oligomeic Turkey Beta1-adrenergic G Protein-coupled
Receptor
Length = 313
Score = 87.8 bits (216), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 72/282 (25%), Positives = 122/282 (43%), Gaps = 15/282 (5%)
Query: 35 LSVFYGTISVLAVVGNFLVIWIVATSRRMQNVTNCFIANLALADIVIGLFAIPFQFQAAL 94
+S+ + +L V GN LVI + +++R+Q +TN FI +LA AD+V+GL +PF +
Sbjct: 14 MSLLMALVVLLIVAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFGATLVV 73
Query: 95 LQRWNLPNFMCPFCPFVQCXXXXXXXXXXXAIAVDRHRAILNPLSARP--SKLRAKICIF 152
W +F+C + IA+DR+ AI +P + ++ RAK+ I
Sbjct: 74 RGTWLWGSFLCELWTSLDVLCVTASIETLCVIAIDRYLAITSPFRYQSLMTRARAKVIIC 133
Query: 153 GIWTLSSFLAAPMAIATGVTMEEEYTDP-AGRIHLKPFCTNIHLSDDTMILYRRVLAVVQ 211
+W +S+ L + + I +E DP A + + P C + T Y +++
Sbjct: 134 TVWAISA-LVSFLPIMMHWWRDE---DPQALKCYQDPGCCDFV----TNRAYAIASSIIS 185
Query: 212 YAIPLSVISFVYARMALRLWGSKAPGNAQDSRDATXXXXXXXXXXXXXXXXALFAICWLP 271
+ IPL ++ FV R+ + R +F +CWLP
Sbjct: 186 FYIPLLIMIFVALRVYREAKEQIRKIDRASKRKRVMLMREHKALKTLGIIMGVFTLCWLP 245
Query: 272 LQTYNVLQGIFPSINSYHYINIVFFCCDWLAMSNSCYNPFIY 313
N++ N + +F +WL +NS NP IY
Sbjct: 246 FFLVNIVN----VFNRDLVPDWLFVAFNWLGYANSAMNPIIY 283
>pdb|2Y00|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob92)
pdb|2Y00|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob92)
pdb|2Y01|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob102)
pdb|2Y01|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob102)
pdb|2Y02|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Carmoterol
pdb|2Y02|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Carmoterol
pdb|2Y03|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Isoprenaline
pdb|2Y03|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Isoprenaline
pdb|2Y04|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Salbutamol
pdb|2Y04|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Salbutamol
pdb|4AMI|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Bucindolol
pdb|4AMI|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Bucindolol
pdb|4AMJ|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Carvedilol
pdb|4AMJ|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Carvedilol
Length = 315
Score = 85.5 bits (210), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 75/288 (26%), Positives = 126/288 (43%), Gaps = 25/288 (8%)
Query: 35 LSVFYGTISVLAVVGNFLVIWIVATSRRMQNVTNCFIANLALADIVIGLFAIPFQFQAAL 94
+S+ + +L V GN LVI + +++R+Q +TN FI +LA AD+V+GL +PF +
Sbjct: 14 MSLLMALVVLLIVAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFGATLVV 73
Query: 95 LQRWNLPNFMCPFCPFVQCXXXXXXXXXXXAIAVDRHRAILNPLSARP--SKLRAKICIF 152
W +F+C + IA+DR+ AI +P + ++ RAK+ I
Sbjct: 74 RGTWLWGSFLCELWTSLDVLCVTASIETLCVIAIDRYLAITSPFRYQSLMTRARAKVIIC 133
Query: 153 GIWTLSSFLAAPMAIATGVTMEEEYTDP-AGRIHLKPFCTNIHLSDDTMILYRRVLAVVQ 211
+W +S+ L + + I +E DP A + + P C + T Y +++
Sbjct: 134 TVWAISA-LVSFLPIMMHWWRDE---DPQALKCYQDPGCCDFV----TNRAYAIASSIIS 185
Query: 212 YAIPLSVISFVYARMALRLWGSKAPGNAQDSRDATXXXXXXXXXXXXXXXXAL------F 265
+ IPL ++ FV ALR++ + R + L F
Sbjct: 186 FYIPLLIMIFV----ALRVYREAKEQIRKIDRASKRKTSRVMLMREHKALKTLGIIMGVF 241
Query: 266 AICWLPLQTYNVLQGIFPSINSYHYINIVFFCCDWLAMSNSCYNPFIY 313
+CWLP N++ N + +F +WL +NS NP IY
Sbjct: 242 TLCWLPFFLVNIVN----VFNRDLVPDWLFVAFNWLGYANSAMNPIIY 285
>pdb|3P0G|A Chain A, Structure Of A Nanobody-Stabilized Active State Of The
Beta2 Adrenoceptor
Length = 501
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 61/189 (32%), Positives = 91/189 (48%), Gaps = 16/189 (8%)
Query: 44 VLAVV-GNFLVIWIVATSRRMQNVTNCFIANLALADIVIGLFAIPFQFQAALLQRWNLPN 102
VLA+V GN LVI +A R+Q VTN FI +LA AD+V+GL +PF L++ W N
Sbjct: 52 VLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGN 111
Query: 103 FMCPFCPFVQCXXXXXXXXXXXAIAVDRHRAILNPLSARP--SKLRAKICIFGIW---TL 157
F C F + IAVDR+ AI +P + +K +A++ I +W L
Sbjct: 112 FWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGL 171
Query: 158 SSFLAAPMAIATGVTMEEEYTDPAGRIHLKPFCTNIHLSDDTMILYRRVLAVVQYAIPLS 217
+SFL M E A + + C + T Y ++V + +PL
Sbjct: 172 TSFLPIQMHWYRATHQE------AINCYAEETCCDFF----TNQAYAIASSIVSFYVPLV 221
Query: 218 VISFVYARM 226
++ FVY+R+
Sbjct: 222 IMVFVYSRV 230
Score = 32.0 bits (71), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
Query: 265 FAICWLPLQTYNVLQGIFPSINSYHYINIVFFCCDWLAMSNSCYNPFIY 313
F +CWLP N++ I ++ V+ +W+ NS +NP IY
Sbjct: 418 FTLCWLPFFIVNIVHVIQDNLIRKE----VYILLNWIGYVNSGFNPLIY 462
>pdb|2RH1|A Chain A, High Resolution Crystal Structure Of Human B2-Adrenergic G
Protein- Coupled Receptor
Length = 500
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 61/189 (32%), Positives = 91/189 (48%), Gaps = 16/189 (8%)
Query: 44 VLAVV-GNFLVIWIVATSRRMQNVTNCFIANLALADIVIGLFAIPFQFQAALLQRWNLPN 102
VLA+V GN LVI +A R+Q VTN FI +LA AD+V+GL +PF L++ W N
Sbjct: 51 VLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGN 110
Query: 103 FMCPFCPFVQCXXXXXXXXXXXAIAVDRHRAILNPLSARP--SKLRAKICIFGIW---TL 157
F C F + IAVDR+ AI +P + +K +A++ I +W L
Sbjct: 111 FWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGL 170
Query: 158 SSFLAAPMAIATGVTMEEEYTDPAGRIHLKPFCTNIHLSDDTMILYRRVLAVVQYAIPLS 217
+SFL M E A + + C + T Y ++V + +PL
Sbjct: 171 TSFLPIQMHWYRATHQE------AINCYAEETCCDFF----TNQAYAIASSIVSFYVPLV 220
Query: 218 VISFVYARM 226
++ FVY+R+
Sbjct: 221 IMVFVYSRV 229
Score = 32.0 bits (71), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
Query: 265 FAICWLPLQTYNVLQGIFPSINSYHYINIVFFCCDWLAMSNSCYNPFIY 313
F +CWLP N++ I ++ V+ +W+ NS +NP IY
Sbjct: 417 FTLCWLPFFIVNIVHVIQDNLIRKE----VYILLNWIGYVNSGFNPLIY 461
>pdb|3PDS|A Chain A, Irreversible Agonist-Beta2 Adrenoceptor Complex
Length = 458
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 60/189 (31%), Positives = 91/189 (48%), Gaps = 16/189 (8%)
Query: 44 VLAVV-GNFLVIWIVATSRRMQNVTNCFIANLALADIVIGLFAIPFQFQAALLQRWNLPN 102
VLA+V GN LVI +A R+Q VTN FI +LA AD+V+GL +PF L++ W N
Sbjct: 20 VLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAACILMKMWTFGN 79
Query: 103 FMCPFCPFVQCXXXXXXXXXXXAIAVDRHRAILNPLSARP--SKLRAKICIFGIWT---L 157
F C F + IAVDR+ AI +P + +K +A++ I +W L
Sbjct: 80 FWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGL 139
Query: 158 SSFLAAPMAIATGVTMEEEYTDPAGRIHLKPFCTNIHLSDDTMILYRRVLAVVQYAIPLS 217
+SFL M E A + + C + + Y ++V + +PL
Sbjct: 140 TSFLPIQMHWYRATHQE------AINCYAEETCCDFFTNQA----YAIASSIVSFYVPLV 189
Query: 218 VISFVYARM 226
++ FVY+R+
Sbjct: 190 IMVFVYSRV 198
Score = 32.0 bits (71), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
Query: 265 FAICWLPLQTYNVLQGIFPSINSYHYINIVFFCCDWLAMSNSCYNPFIY 313
F +CWLP N++ I ++ V+ +W+ NS +NP IY
Sbjct: 386 FTLCWLPFFIVNIVHVIQDNLIRKE----VYILLNWIGYVNSGFNPLIY 430
>pdb|3D4S|A Chain A, Cholesterol Bound Form Of Human Beta2 Adrenergic Receptor.
pdb|3NY8|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With The Inverse Agonist Ici 118,551
pdb|3NY9|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With A Novel Inverse Agonist
pdb|3NYA|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With The Neutral Antagonist Alprenolol
Length = 490
Score = 79.3 bits (194), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 61/189 (32%), Positives = 91/189 (48%), Gaps = 16/189 (8%)
Query: 44 VLAVV-GNFLVIWIVATSRRMQNVTNCFIANLALADIVIGLFAIPFQFQAALLQRWNLPN 102
VLA+V GN LVI +A R+Q VTN FI +LA AD+V+GL +PF L++ W N
Sbjct: 52 VLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGN 111
Query: 103 FMCPFCPFVQCXXXXXXXXXXXAIAVDRHRAILNPLSARP--SKLRAKICIFGIW---TL 157
F C F + IAVDR+ AI +P + +K +A++ I +W L
Sbjct: 112 FWCEFWTSIDVLCVTASIWTLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGL 171
Query: 158 SSFLAAPMAIATGVTMEEEYTDPAGRIHLKPFCTNIHLSDDTMILYRRVLAVVQYAIPLS 217
+SFL M E A + + C + T Y ++V + +PL
Sbjct: 172 TSFLPIQMHWYRATHQE------AINCYAEETCCDFF----TNQAYAIASSIVSFYVPLV 221
Query: 218 VISFVYARM 226
++ FVY+R+
Sbjct: 222 IMVFVYSRV 230
Score = 32.0 bits (71), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
Query: 265 FAICWLPLQTYNVLQGIFPSINSYHYINIVFFCCDWLAMSNSCYNPFIY 313
F +CWLP N++ I ++ V+ +W+ NS +NP IY
Sbjct: 418 FTLCWLPFFIVNIVHVIQDNLIRKE----VYILLNWIGYVNSGFNPLIY 462
>pdb|3VG9|A Chain A, Crystal Structure Of Human Adenosine A2a Receptor With An
Allosteric Inverse-Agonist Antibody At 2.7 A Resolution
pdb|3VGA|A Chain A, Crystal Structure Of Human Adenosine A2a Receptor With An
Allosteric Inverse-Agonist Antibody At 3.1 A Resolution
Length = 326
Score = 75.1 bits (183), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 88/306 (28%), Positives = 124/306 (40%), Gaps = 44/306 (14%)
Query: 41 TISVLAVVGNFLVIWIVATSRRMQNVTNCFIANLALADIVIGLFAIPFQ------FQAAL 94
I+VLA++GN LV W V + +QNVTN F+ +LA ADI +G+ AIPF F AA
Sbjct: 15 AIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAITISTGFCAA- 73
Query: 95 LQRWNLPNFMCPFCPFVQCXXXXXXXX---XXXAIAVDRHRAILNPL--SARPSKLRAKI 149
C C F+ C AIA+DR+ AI PL + + RAK
Sbjct: 74 ----------CHGCLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKG 123
Query: 150 CIFGIWTLSSFLA-APMAIATGVTMEEE---YTDPAGRIHLKPFCTNIHLSDDTMILYRR 205
I W LS + PM +E ++ G + C + ++Y
Sbjct: 124 IIAICWVLSFAIGLTPMLGWNNCGQPKEGKQHSQGCGEGQVA--CLFEDVVPMNYMVYFN 181
Query: 206 VLAVVQYAIPLSVISFVYARMALRLWGSKAPGNAQ---DSRDATXXXXXXXXXXXXXXXX 262
A V +PL ++ VY R+ L +Q R +
Sbjct: 182 FFACV--LVPLLLMLGVYLRIFLAARRQLKQMESQPLPGERARSTLQKEVHAAKSLAIIV 239
Query: 263 ALFAICWLPLQTYNVLQGIFPSINS----YHYINIVFFCCDWLAMSNSCYNPFIYGIYND 318
LFA+CWLPL N P + Y+ IV L+ +NS NPFIY Y
Sbjct: 240 GLFALCWLPLHIINCFTFFCPDCSHAPLWLMYLAIV------LSHTNSVVNPFIYA-YRI 292
Query: 319 KERKKN 324
+E ++
Sbjct: 293 REFRQT 298
>pdb|3PWH|A Chain A, Thermostabilised Adenosine A2a Receptor
pdb|3REY|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
Xac
pdb|3RFM|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
Caffeine
pdb|3UZA|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
6-(2,6-
Dimethylpyridin-4-Yl)-5-Phenyl-1,2,4-Triazin-3-Amine
pdb|3UZC|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
4-(3-Amino-5- Phenyl-1,2,4-Triazin-6-Yl)-2-Chlorophenol
Length = 329
Score = 74.3 bits (181), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 88/304 (28%), Positives = 123/304 (40%), Gaps = 40/304 (13%)
Query: 41 TISVLAVVGNFLVIWIVATSRRMQNVTNCFIANLALADIVIGLFAIPFQ------FQAAL 94
I+VLA++GN LV W V + +QNVTN F+ +LA ADI++G+ AIPF F AA
Sbjct: 15 AIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADILVGVLAIPFAITISTGFCAA- 73
Query: 95 LQRWNLPNFMCPFCPFVQCXXXXXXXX---XXXAIAVDRHRAILNPL--SARPSKLRAKI 149
C C F+ C AIA+DR+ AI PL + + RA
Sbjct: 74 ----------CHGCLFIACFVLVLAQSSIFSLLAIAIDRYIAIAIPLRYNGLVTGTRAAG 123
Query: 150 CIFGIWTLSSFLA-APMAIATGVTMEEEYTDPA-GRIHLKPFCTNIHLSDDTMILYRRVL 207
I W LS + PM +E + + G + C + ++Y
Sbjct: 124 IIAICWVLSFAIGLTPMLGWNNCGQPKEGKNHSQGCGEGQVACLFEDVVPMNYMVYFNFF 183
Query: 208 AVVQYAIPLSVISFVYARM---ALRLWGSKAPGNAQDSRDATXXXXXXXXXXXXXXXXAL 264
A V +PL ++ VY R+ A R R + L
Sbjct: 184 ACV--LVPLLLMLGVYLRIFAAARRQLKQMESQPLPGERARSTLQKEVHAAKSAAIIAGL 241
Query: 265 FAICWLPLQTYNVLQGIFPSINS----YHYINIVFFCCDWLAMSNSCYNPFIYGIYNDKE 320
FA+CWLPL N P + Y+ IV LA +NS NPFIY Y +E
Sbjct: 242 FALCWLPLHIINCFTFFCPDCSHAPLWLMYLAIV------LAHTNSVVNPFIYA-YRIRE 294
Query: 321 RKKN 324
++
Sbjct: 295 FRQT 298
>pdb|2YDO|A Chain A, Thermostabilised Human A2a Receptor With Adenosine Bound
pdb|2YDV|A Chain A, Thermostabilised Human A2a Receptor With Neca Bound
Length = 325
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 87/306 (28%), Positives = 124/306 (40%), Gaps = 44/306 (14%)
Query: 41 TISVLAVVGNFLVIWIVATSRRMQNVTNCFIANLALADIVIGLFAIPFQ------FQAAL 94
I+VLA++GN LV W V + +QNVTN F+ + A ADI++G+ AIPF F AA
Sbjct: 15 AIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSAAAADILVGVLAIPFAIAISTGFCAA- 73
Query: 95 LQRWNLPNFMCPFCPFVQCXXXXXXXX---XXXAIAVDRHRAILNPL--SARPSKLRAKI 149
C C F+ C AIA+DR+ AI PL + + RAK
Sbjct: 74 ----------CHGCLFIACFVLVLTASSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKG 123
Query: 150 CIFGIWTLSSFLA-APMAIATGVTMEEE---YTDPAGRIHLKPFCTNIHLSDDTMILYRR 205
I W LS + PM +E ++ G + C + ++Y
Sbjct: 124 IIAICWVLSFAIGLTPMLGWNNCGQPKEGKAHSQGCGEGQVA--CLFEDVVPMNYMVYFN 181
Query: 206 VLAVVQYAIPLSVISFVYARMALRLWGSKAPGNAQ---DSRDATXXXXXXXXXXXXXXXX 262
A V +PL ++ VY R+ L +Q R +
Sbjct: 182 FFACV--LVPLLLMLGVYLRIFLAARRQLKQMESQPLPGERARSTLQKEVHAAKSLAIIV 239
Query: 263 ALFAICWLPLQTYNVLQGIFPSINS----YHYINIVFFCCDWLAMSNSCYNPFIYGIYND 318
LFA+CWLPL N P + Y+ IV L+ +NS NPFIY Y
Sbjct: 240 GLFALCWLPLHIINCFTFFCPDCSHAPLWLMYLAIV------LSHTNSVVNPFIYA-YRI 292
Query: 319 KERKKN 324
+E ++
Sbjct: 293 REFRQT 298
>pdb|4DJH|A Chain A, Structure Of The Human Kappa Opioid Receptor In Complex
With Jdtic
pdb|4DJH|B Chain B, Structure Of The Human Kappa Opioid Receptor In Complex
With Jdtic
Length = 480
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 95/207 (45%), Gaps = 16/207 (7%)
Query: 30 SIIILLSVFYGTISVLAVVGNFLVIWIVATSRRMQNVTNCFIANLALADIVIGLFAIPFQ 89
+I ++++ Y + V+ +VGN LV++++ +M+ TN +I NLALAD ++ +PFQ
Sbjct: 20 AIPVIITAVYSVVFVVGLVGNSLVMFVIIRYTKMKTATNIYIFNLALADALVTT-TMPFQ 78
Query: 90 FQAALLQRWNLPNFMCPFCPFVQCXXXXXXXXXXXAIAVDRHRAILNPLSARP--SKLRA 147
L+ W + +C + ++VDR+ A+ +P+ A + L+A
Sbjct: 79 STVYLMNSWPFGDVLCKIVLSIDYYNMFTSIFTLTMMSVDRYIAVCHPVKALDFRTPLKA 138
Query: 148 KICIFGIWTLSSFLAAPMAIATGVTMEEEYTDPAGRIHLKPFCTNIHLSDDTM----ILY 203
KI IW LSS + + G + E+ + ++ DD +
Sbjct: 139 KIINICIWLLSSSVGISAIVLGGTKVRED---------VDVIECSLQFPDDDYSWWDLFM 189
Query: 204 RRVLAVVQYAIPLSVISFVYARMALRL 230
+ + + + IP+ +I Y M LRL
Sbjct: 190 KICVFIFAFVIPVLIIIVCYTLMILRL 216
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/55 (21%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 268 CWLPLQTYNVLQGIFPSINSYHYINIVFFCCDWLAMSNSCYNPFIYGIYNDKERK 322
CW P+ + +++ + + +S ++ +FC L +NS NP +Y ++ ++
Sbjct: 408 CWTPIHIFILVEALGSTSHSTAALSSYYFCIA-LGYTNSSLNPILYAFLDENFKR 461
>pdb|3RZE|A Chain A, Structure Of The Human Histamine H1 Receptor In Complex
With Doxepin
Length = 452
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 64/133 (48%), Gaps = 2/133 (1%)
Query: 35 LSVFYGTISVLAVVGNFLVIWIVATSRRMQNVTNCFIANLALADIVIGLFAIPFQFQAAL 94
L V TI ++ V N LV++ V + R++ V N +I +L++AD+++G +P L
Sbjct: 11 LVVVLSTICLVTVGLNLLVLYAVRSERKLHTVGNLYIVSLSVADLIVGAVVMPMNILYLL 70
Query: 95 LQRWNLPNFMCPFCPFVQCXXXXXXXXXXXAIAVDRHRAILNPLS--ARPSKLRAKICIF 152
+ +W+L +C F + + +DR+R++ PL +K RA I
Sbjct: 71 MSKWSLGRPLCLFWLSMDYVASTASIFSVFILCIDRYRSVQQPLRYLKYRTKTRASATIL 130
Query: 153 GIWTLSSFLAAPM 165
G W LS P+
Sbjct: 131 GAWFLSFLWVIPI 143
>pdb|4DAJ|A Chain A, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|B Chain B, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|C Chain C, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|D Chain D, Structure Of The M3 Muscarinic Acetylcholine Receptor
Length = 479
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 94/197 (47%), Gaps = 12/197 (6%)
Query: 32 IILLSVFYGTISVLAVVGNFLVIWIVATSRRMQNVTNCFIANLALADIVIGLFAIPFQFQ 91
++ ++ G ++++ ++GN LVI +++++ V N F+ +LA AD++IG+ ++
Sbjct: 12 VVFIAFLTGFLALVTIIGNILVIVAFKVNKQLKTVNNYFLLSLACADLIIGVISMNLFTT 71
Query: 92 AALLQRWNLPNFMCPFCPFVQCXXXXXXXXXXXAIAVDRHRAILNPLSARPSKL--RAKI 149
++ RW L N C + I+ DR+ +I PL+ R + RA +
Sbjct: 72 YIIMNRWALGNLACDLWLSIDYVASNASVMNLLVISFDRYFSITRPLTYRAKRTTKRAGV 131
Query: 150 CIFGIWTLSSFLAAPMAIATGVTMEEEYTDPAGRIHLKPFCTNIHLSDDTMILYRRVLAV 209
I W +S L AP AI + T P G ++ LS+ T+ A+
Sbjct: 132 MIGLAWVISFVLWAP-AILFWQYFVGKRTVPPGECFIQ------FLSEPTITFGT---AI 181
Query: 210 VQYAIPLSVISFVYARM 226
+ +P+++++ +Y R+
Sbjct: 182 AAFYMPVTIMTILYWRI 198
>pdb|3EML|A Chain A, The 2.6 A Crystal Structure Of A Human A2a Adenosine
Receptor Bound To Zm241385.
pdb|3QAK|A Chain A, Agonist Bound Structure Of The Human Adenosine A2a
Receptor
Length = 488
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 47/124 (37%), Positives = 62/124 (50%), Gaps = 14/124 (11%)
Query: 42 ISVLAVVGNFLVIWIVATSRRMQNVTNCFIANLALADIVIGLFAIPFQFQAALLQRWNLP 101
I+VLA++GN LV W V + +QNVTN F+ +LA ADI +G+ AIPF +
Sbjct: 31 IAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAITIS-------T 83
Query: 102 NF--MCPFCPFVQC---XXXXXXXXXXXAIAVDRHRAILNPL--SARPSKLRAKICIFGI 154
F C C F+ C AIA+DR+ AI PL + + RAK I
Sbjct: 84 GFCAACHGCLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAIC 143
Query: 155 WTLS 158
W LS
Sbjct: 144 WVLS 147
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 11/65 (16%)
Query: 263 ALFAICWLPLQTYNVLQGIFPSINS----YHYINIVFFCCDWLAMSNSCYNPFIYGIYND 318
LFA+CWLPL N P + Y+ IV L+ +NS NPFIY Y
Sbjct: 402 GLFALCWLPLHIINCFTFFCPDCSHAPLWLMYLAIV------LSHTNSVVNPFIYA-YRI 454
Query: 319 KERKK 323
+E ++
Sbjct: 455 REFRQ 459
>pdb|4EIY|A Chain A, Crystal Structure Of The Chimeric Protein Of A2aar-Bril In
Complex With Zm241385 At 1.8a Resolution
Length = 447
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 49/129 (37%), Positives = 63/129 (48%), Gaps = 22/129 (17%)
Query: 41 TISVLAVVGNFLVIWIVATSRRMQNVTNCFIANLALADIVIGLFAIPFQ------FQAAL 94
I+VLA++GN LV W V + +QNVTN F+ +LA ADI +G+ AIPF F AA
Sbjct: 40 AIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAITISTGFCAA- 98
Query: 95 LQRWNLPNFMCPFCPFVQC---XXXXXXXXXXXAIAVDRHRAILNPL--SARPSKLRAKI 149
C C F+ C AIA+DR+ AI PL + + RAK
Sbjct: 99 ----------CHGCLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKG 148
Query: 150 CIFGIWTLS 158
I W LS
Sbjct: 149 IIAICWVLS 157
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 11/66 (16%)
Query: 263 ALFAICWLPLQTYNVLQGIFPSINS----YHYINIVFFCCDWLAMSNSCYNPFIYGIYND 318
LFA+CWLPL N P + Y+ IV L+ +NS NPFIY Y
Sbjct: 361 GLFALCWLPLHIINCFTFFCPDCSHAPLWLMYLAIV------LSHTNSVVNPFIYA-YRI 413
Query: 319 KERKKN 324
+E ++
Sbjct: 414 REFRQT 419
>pdb|4DKL|A Chain A, Crystal Structure Of The Mu-Opioid Receptor Bound To A
Morphinan Antagonist
Length = 464
Score = 60.8 bits (146), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 52/203 (25%), Positives = 87/203 (42%), Gaps = 17/203 (8%)
Query: 33 ILLSVFYGTISVLAVVGNFLVIWIVATSRRMQNVTNCFIANLALADIVIGLFAIPFQFQA 92
I + Y + V+ + GNFLV++++ +M+ TN +I NLALAD + +PFQ
Sbjct: 18 ITIMALYSIVCVVGLFGNFLVMYVIVRYTKMKTATNIYIFNLALAD-ALATSTLPFQSVN 76
Query: 93 ALLQRWNLPNFMCPFCPFVQCXXXXXXXXXXXAIAVDRHRAILNPLSARPSKL--RAKIC 150
L+ W N +C + ++VDR+ A+ +P+ A + AKI
Sbjct: 77 YLMGTWPFGNILCKIVISIDYYNMFTSIFTLCTMSVDRYIAVCHPVKALDFRTPRNAKIV 136
Query: 151 IFGIWTLSSFLAAPMAIATGVTMEEEYTDPAGRIHLKPFCTNIHLSDDTMI---LYRRVL 207
W LSS + P+ + D CT + S T L + +
Sbjct: 137 NVCNWILSSAIGLPVMFMATTKYRQGSID----------CT-LTFSHPTWYWENLLKICV 185
Query: 208 AVVQYAIPLSVISFVYARMALRL 230
+ + +P+ +I+ Y M LRL
Sbjct: 186 FIFAFIMPVLIITVCYGLMILRL 208
Score = 32.0 bits (71), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 13/55 (23%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 268 CWLPLQTYNVLQGIFPSINSYHYINIVFFCCDWLAMSNSCYNPFIYGIYNDKERK 322
CW P+ Y +++ + +I + + + C L +NSC NP +Y ++ ++
Sbjct: 395 CWTPIHIYVIIKALI-TIPETTFQTVSWHFCIALGYTNSCLNPVLYAFLDENFKR 448
>pdb|4EJ4|A Chain A, Structure Of The Delta Opioid Receptor Bound To
Naltrindole
Length = 461
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 69/142 (48%), Gaps = 7/142 (4%)
Query: 30 SIIILLSVFYGTISVLAVVGNFLVIWIVATSRRMQNVTNCFIANLALADIVIGLFAIPFQ 89
++ I ++ Y + + ++GN LV++ + +++ TN +I NLALAD + +PFQ
Sbjct: 12 ALAIAITALYSAVCAVGLLGNVLVMFGIVRYTKLKTATNIYIFNLALAD-ALATSTLPFQ 70
Query: 90 FQAALLQRWNLPNFMCPFCPFVQCXXXXXXXXXXXAIAVDRHRAILNPLSA----RPSKL 145
L++ W +C + ++VDR+ A+ +P+ A P+K
Sbjct: 71 SAKYLMETWPFGELLCKAVLSIDYYNMFTSIFTLTMMSVDRYIAVCHPVKALDFRTPAK- 129
Query: 146 RAKICIFGIWTLSSFLAAPMAI 167
AK+ IW L+S + P+ +
Sbjct: 130 -AKLINICIWVLASGVGVPIMV 150
>pdb|3UON|A Chain A, Structure Of The Human M2 Muscarinic Acetylcholine
Receptor Bound To An Antagonist
Length = 467
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 68/136 (50%), Gaps = 4/136 (2%)
Query: 32 IILLSVFYGTISVLAVVGNFLVIWIVATSRRMQNVTNCFIANLALADIVIGLFAIPFQFQ 91
++ + + G++S++ ++GN LV+ + +R +Q V N F+ +LA AD++IG+F++
Sbjct: 23 VVFIVLVAGSLSLVTIIGNILVMVSIKVNRHLQTVNNYFLFSLACADLIIGVFSMNLYTL 82
Query: 92 AALLQRWNLPNFMCPFCPFVQCXXXXXXXXXXXAIAVDRHRAILNPLS---ARPSKLRAK 148
++ W L +C + I+ DR+ + PL+ R +K+ A
Sbjct: 83 YTVIGYWPLGPVVCDLWLALDYVVSNASVMNLLIISFDRYFCVTKPLTYPVKRTTKM-AG 141
Query: 149 ICIFGIWTLSSFLAAP 164
+ I W LS L AP
Sbjct: 142 MMIAAAWVLSFILWAP 157
>pdb|3ODU|A Chain A, The 2.5 A Structure Of The Cxcr4 Chemokine Receptor In
Complex With Small Molecule Antagonist It1t
pdb|3ODU|B Chain B, The 2.5 A Structure Of The Cxcr4 Chemokine Receptor In
Complex With Small Molecule Antagonist It1t
pdb|3OE8|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE8|B Chain B, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE8|C Chain C, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
Length = 502
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 71/147 (48%), Gaps = 6/147 (4%)
Query: 33 ILLSVFYGTISVLAVVGNFLVIWIVATSRRMQNVTNCFIANLALADIVIGLFAIPFQFQA 92
I L Y I + +VGN LVI ++ ++++++T+ + +L++AD+ LF I F A
Sbjct: 49 IFLPTIYSIIFLTGIVGNGLVILVMGYQKKLRSMTDKYRLHLSVADL---LFVITLPFWA 105
Query: 93 A-LLQRWNLPNFMCPFCPFVQCXXXXXXXXXXXAIAVDRHRAILNPL-SARPSKLRA-KI 149
+ W NF+C + I++DR+ AI++ S RP KL A K+
Sbjct: 106 VDAVANWYFGNFLCKAVHVIYTVNLYSSVWILAFISLDRYLAIVHATNSQRPRKLLAEKV 165
Query: 150 CIFGIWTLSSFLAAPMAIATGVTMEEE 176
G+W + L P I V+ ++
Sbjct: 166 VYVGVWIPALLLTIPDFIFANVSEADD 192
>pdb|3OE0|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Cyclic Peptide Antagonist Cvx15
pdb|3OE9|A Chain A, Crystal Structure Of The Chemokine Cxcr4 Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE9|B Chain B, Crystal Structure Of The Chemokine Cxcr4 Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
Length = 499
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 71/147 (48%), Gaps = 6/147 (4%)
Query: 33 ILLSVFYGTISVLAVVGNFLVIWIVATSRRMQNVTNCFIANLALADIVIGLFAIPFQFQA 92
I L Y I + +VGN LVI ++ ++++++T+ + +L++AD+ LF I F A
Sbjct: 49 IFLPTIYSIIFLTGIVGNGLVILVMGYQKKLRSMTDKYRLHLSVADL---LFVITLPFWA 105
Query: 93 A-LLQRWNLPNFMCPFCPFVQCXXXXXXXXXXXAIAVDRHRAILNPL-SARPSKLRA-KI 149
+ W NF+C + I++DR+ AI++ S RP KL A K+
Sbjct: 106 VDAVANWYFGNFLCKAVHVIYTVNLYSSVWILAFISLDRYLAIVHATNSQRPRKLLAEKV 165
Query: 150 CIFGIWTLSSFLAAPMAIATGVTMEEE 176
G+W + L P I V+ ++
Sbjct: 166 VYVGVWIPALLLTIPDFIFANVSEADD 192
>pdb|3OE6|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In I222
Spacegroup
Length = 508
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 71/147 (48%), Gaps = 6/147 (4%)
Query: 33 ILLSVFYGTISVLAVVGNFLVIWIVATSRRMQNVTNCFIANLALADIVIGLFAIPFQFQA 92
I L Y I + +VGN LVI ++ ++++++T+ + +L++AD+ LF I F A
Sbjct: 49 IFLPTIYSIIFLTGIVGNGLVILVMGYQKKLRSMTDKYRLHLSVADL---LFVITLPFWA 105
Query: 93 A-LLQRWNLPNFMCPFCPFVQCXXXXXXXXXXXAIAVDRHRAILNPL-SARPSKLRA-KI 149
+ W NF+C + I++DR+ AI++ S RP KL A K+
Sbjct: 106 VDAVANWYFGNFLCKAVHVIYTVNLYSSVWILAFISLDRYLAIVHATNSQRPRKLLAEKV 165
Query: 150 CIFGIWTLSSFLAAPMAIATGVTMEEE 176
G+W + L P I V+ ++
Sbjct: 166 VYVGVWIPALLLTIPDFIFANVSEADD 192
>pdb|3PBL|A Chain A, Structure Of The Human Dopamine D3 Receptor In Complex
With Eticlopride
pdb|3PBL|B Chain B, Structure Of The Human Dopamine D3 Receptor In Complex
With Eticlopride
Length = 481
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 81/190 (42%), Gaps = 25/190 (13%)
Query: 44 VLAVV-GNFLVIWIVATSRRMQNVTNCFIANLALADIVIGLFAIPFQFQAALLQR-WNLP 101
+LA+V GN LV V R +Q TN + +LA+AD+++ +P+ + WN
Sbjct: 49 ILAIVFGNGLVCMAVLKERALQTTTNYLVVSLAVADLLVATLVMPWVVYLEVTGGVWNFS 108
Query: 102 NFMCPFCPFVQCXXXXXXXXXXXAIAVDRHRAILNPL-----SARPSKLRAKICIFGIWT 156
C + AI++DR+ A++ P+ + + S R + I +W
Sbjct: 109 RICCDVFVTLDVMMCTASIWNLCAISIDRYTAVVMPVHYQHGTGQSSCRRVALMITAVWV 168
Query: 157 LSSFLAAPMAIATGVTMEEEYTDPAGRIHLKPFCTNIHLSDDTMILYRRVLAVVQYAIPL 216
L+ ++ P+ T DP T +S+ ++Y +VV + +P
Sbjct: 169 LAFAVSCPLLFGFNTT-----GDP----------TVCSISNPDFVIYS---SVVSFYLPF 210
Query: 217 SVISFVYARM 226
V VYAR+
Sbjct: 211 GVTVLVYARI 220
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Query: 265 FAICWLPLQTYNVLQGIFPSINSYHYINIVFFCCDWLAMSNSCYNPFIYGIYNDKERK 322
F +CWLP +VL + H ++ WL NS NP IY +N + RK
Sbjct: 410 FIVCWLPFFLTHVLN---THCQTCHVSPELYSATTWLGYVNSALNPVIYTTFNIEFRK 464
>pdb|3OAX|A Chain A, Crystal Structure Of Bovine Rhodopsin With Beta-Ionone
pdb|3OAX|B Chain B, Crystal Structure Of Bovine Rhodopsin With Beta-Ionone
pdb|1GZM|A Chain A, Structure Of Bovine Rhodopsin In A Trigonal Crystal Form
pdb|1GZM|B Chain B, Structure Of Bovine Rhodopsin In A Trigonal Crystal Form
pdb|1HZX|A Chain A, Crystal Structure Of Bovine Rhodopsin
pdb|1HZX|B Chain B, Crystal Structure Of Bovine Rhodopsin
pdb|2I36|A Chain A, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I36|B Chain B, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I36|C Chain C, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I35|A Chain A, Crystal Structure Of Rhombohedral Crystal Form Of
Ground-State Rhodopsin
pdb|2I37|A Chain A, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2I37|B Chain B, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2I37|C Chain C, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2HPY|A Chain A, Crystallographic Model Of Lumirhodopsin
pdb|2HPY|B Chain B, Crystallographic Model Of Lumirhodopsin
pdb|2PED|A Chain A, Crystallographic Model Of 9-Cis-Rhodopsin
pdb|2PED|B Chain B, Crystallographic Model Of 9-Cis-Rhodopsin
pdb|2G87|A Chain A, Crystallographic Model Of Bathorhodopsin
pdb|2G87|B Chain B, Crystallographic Model Of Bathorhodopsin
pdb|1L9H|A Chain A, Crystal Structure Of Bovine Rhodopsin At 2.6 Angstroms
Resolution
pdb|1L9H|B Chain B, Crystal Structure Of Bovine Rhodopsin At 2.6 Angstroms
Resolution
pdb|1U19|A Chain A, Crystal Structure Of Bovine Rhodopsin At 2.2 Angstroms
Resolution
pdb|1U19|B Chain B, Crystal Structure Of Bovine Rhodopsin At 2.2 Angstroms
Resolution
Length = 349
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 58/274 (21%), Positives = 104/274 (37%), Gaps = 14/274 (5%)
Query: 50 NFLVIWIVATSRRMQNVTNCFIANLALADIVIGLFAIPFQFQAALLQRWNLPNFMCPFCP 109
NFL +++ ++++ N + NLA+AD+ + +L + C
Sbjct: 56 NFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEG 115
Query: 110 FVQCXXXXXXXXXXXAIAVDRHRAILNPLSA-RPSKLRAKICIFGIWTLSSFLAAPMAIA 168
F +A++R+ + P+S R + A + + W ++ AAP +
Sbjct: 116 FFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVG 175
Query: 169 TGVTMEEEYTDPAGRIHLKPFCTNIHLSDDTMILYRRVLAVVQYAIPLSVISFVYARMAL 228
+ E G + P + ++++ ++Y + VV + IPL VI F Y ++
Sbjct: 176 WSRYIPEGMQCSCGIDYYTP---HEETNNESFVIY---MFVVHFIIPLIVIFFCYGQLVF 229
Query: 229 RLWGSKAPGNAQDSRDATXXXXXXXXXXXXXXXXALFAICWLPLQTYNVLQGIFPSINSY 288
+ AQ AT F ICWLP V IF S
Sbjct: 230 TV----KEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYA--GVAFYIFTHQGS- 282
Query: 289 HYINIVFFCCDWLAMSNSCYNPFIYGIYNDKERK 322
+ I + A +++ YNP IY + N + R
Sbjct: 283 DFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRN 316
>pdb|1JFP|A Chain A, Structure Of Bovine Rhodopsin (Dark Adapted)
pdb|1LN6|A Chain A, Structure Of Bovine Rhodopsin (Metarhodopsin Ii)
pdb|3CAP|A Chain A, Crystal Structure Of Native Opsin: The G Protein-Coupled
Receptor Rhodopsin In Its Ligand-Free State
pdb|3CAP|B Chain B, Crystal Structure Of Native Opsin: The G Protein-Coupled
Receptor Rhodopsin In Its Ligand-Free State
pdb|3C9L|A Chain A, Structure Of Ground-State Bovine Rhodospin In A Hexagonal
Crystal Form
pdb|1F88|A Chain A, Crystal Structure Of Bovine Rhodopsin
pdb|1F88|B Chain B, Crystal Structure Of Bovine Rhodopsin
pdb|3DQB|A Chain A, Crystal Structure Of The Active G-protein-coupled Receptor
Opsin In Complex With A C-terminal Peptide Derived From
The Galpha Subunit Of Transducin
pdb|3PQR|A Chain A, Crystal Structure Of Metarhodopsin Ii In Complex With A
C-Terminal Peptide Derived From The Galpha Subunit Of
Transducin
pdb|3PXO|A Chain A, Crystal Structure Of Metarhodopsin Ii
Length = 348
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 58/274 (21%), Positives = 104/274 (37%), Gaps = 14/274 (5%)
Query: 50 NFLVIWIVATSRRMQNVTNCFIANLALADIVIGLFAIPFQFQAALLQRWNLPNFMCPFCP 109
NFL +++ ++++ N + NLA+AD+ + +L + C
Sbjct: 55 NFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEG 114
Query: 110 FVQCXXXXXXXXXXXAIAVDRHRAILNPLSA-RPSKLRAKICIFGIWTLSSFLAAPMAIA 168
F +A++R+ + P+S R + A + + W ++ AAP +
Sbjct: 115 FFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVG 174
Query: 169 TGVTMEEEYTDPAGRIHLKPFCTNIHLSDDTMILYRRVLAVVQYAIPLSVISFVYARMAL 228
+ E G + P + ++++ ++Y + VV + IPL VI F Y ++
Sbjct: 175 WSRYIPEGMQCSCGIDYYTP---HEETNNESFVIY---MFVVHFIIPLIVIFFCYGQLVF 228
Query: 229 RLWGSKAPGNAQDSRDATXXXXXXXXXXXXXXXXALFAICWLPLQTYNVLQGIFPSINSY 288
+ AQ AT F ICWLP V IF S
Sbjct: 229 TV----KEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYA--GVAFYIFTHQGS- 281
Query: 289 HYINIVFFCCDWLAMSNSCYNPFIYGIYNDKERK 322
+ I + A +++ YNP IY + N + R
Sbjct: 282 DFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRN 315
>pdb|2X72|A Chain A, Crystal Structure Of The Constitutively Active E113q,N2c,
D282c Rhodopsin Mutant With Bound Galphact Peptide
Length = 349
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 58/274 (21%), Positives = 104/274 (37%), Gaps = 14/274 (5%)
Query: 50 NFLVIWIVATSRRMQNVTNCFIANLALADIVIGLFAIPFQFQAALLQRWNLPNFMCPFCP 109
NFL +++ ++++ N + NLA+AD+ + +L + C
Sbjct: 56 NFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLQG 115
Query: 110 FVQCXXXXXXXXXXXAIAVDRHRAILNPLSA-RPSKLRAKICIFGIWTLSSFLAAPMAIA 168
F +A++R+ + P+S R + A + + W ++ AAP +
Sbjct: 116 FFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVG 175
Query: 169 TGVTMEEEYTDPAGRIHLKPFCTNIHLSDDTMILYRRVLAVVQYAIPLSVISFVYARMAL 228
+ E G + P + ++++ ++Y + VV + IPL VI F Y ++
Sbjct: 176 WSRYIPEGMQCSCGIDYYTP---HEETNNESFVIY---MFVVHFIIPLIVIFFCYGQLVF 229
Query: 229 RLWGSKAPGNAQDSRDATXXXXXXXXXXXXXXXXALFAICWLPLQTYNVLQGIFPSINSY 288
+ AQ AT F ICWLP V IF S
Sbjct: 230 TV----KEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYA--GVAFYIFTHQGS- 282
Query: 289 HYINIVFFCCDWLAMSNSCYNPFIYGIYNDKERK 322
+ I + A +++ YNP IY + N + R
Sbjct: 283 CFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRN 316
>pdb|2J4Y|A Chain A, Crystal Structure Of A Rhodopsin Stabilizing Mutant
Expressed In Mammalian Cells
pdb|2J4Y|B Chain B, Crystal Structure Of A Rhodopsin Stabilizing Mutant
Expressed In Mammalian Cells
Length = 349
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 58/274 (21%), Positives = 104/274 (37%), Gaps = 14/274 (5%)
Query: 50 NFLVIWIVATSRRMQNVTNCFIANLALADIVIGLFAIPFQFQAALLQRWNLPNFMCPFCP 109
NFL +++ ++++ N + NLA+AD+ + +L + C
Sbjct: 56 NFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEG 115
Query: 110 FVQCXXXXXXXXXXXAIAVDRHRAILNPLSA-RPSKLRAKICIFGIWTLSSFLAAPMAIA 168
F +A++R+ + P+S R + A + + W ++ AAP +
Sbjct: 116 FFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVG 175
Query: 169 TGVTMEEEYTDPAGRIHLKPFCTNIHLSDDTMILYRRVLAVVQYAIPLSVISFVYARMAL 228
+ E G + P + ++++ ++Y + VV + IPL VI F Y ++
Sbjct: 176 WSRYIPEGMQCSCGIDYYTP---HEETNNESFVIY---MFVVHFIIPLIVIFFCYGQLVF 229
Query: 229 RLWGSKAPGNAQDSRDATXXXXXXXXXXXXXXXXALFAICWLPLQTYNVLQGIFPSINSY 288
+ AQ AT F ICWLP V IF S
Sbjct: 230 TV----KEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYA--GVAFYIFTHQGS- 282
Query: 289 HYINIVFFCCDWLAMSNSCYNPFIYGIYNDKERK 322
+ I + A +++ YNP IY + N + R
Sbjct: 283 CFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRN 316
>pdb|3C9M|A Chain A, Structure Of A Mutant Bovine Rhodopsin In Hexagonal
Crystal Form
Length = 348
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 58/274 (21%), Positives = 104/274 (37%), Gaps = 14/274 (5%)
Query: 50 NFLVIWIVATSRRMQNVTNCFIANLALADIVIGLFAIPFQFQAALLQRWNLPNFMCPFCP 109
NFL +++ ++++ N + NLA+AD+ + +L + C
Sbjct: 55 NFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEG 114
Query: 110 FVQCXXXXXXXXXXXAIAVDRHRAILNPLSA-RPSKLRAKICIFGIWTLSSFLAAPMAIA 168
F +A++R+ + P+S R + A + + W ++ AAP +
Sbjct: 115 FFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVG 174
Query: 169 TGVTMEEEYTDPAGRIHLKPFCTNIHLSDDTMILYRRVLAVVQYAIPLSVISFVYARMAL 228
+ E G + P + ++++ ++Y + VV + IPL VI F Y ++
Sbjct: 175 WSRYIPEGMQCSCGIDYYTP---HEETNNESFVIY---MFVVHFIIPLIVIFFCYGQLVF 228
Query: 229 RLWGSKAPGNAQDSRDATXXXXXXXXXXXXXXXXALFAICWLPLQTYNVLQGIFPSINSY 288
+ AQ AT F ICWLP V IF S
Sbjct: 229 TV----KEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYA--GVAFYIFTHQGS- 281
Query: 289 HYINIVFFCCDWLAMSNSCYNPFIYGIYNDKERK 322
+ I + A +++ YNP IY + N + R
Sbjct: 282 CFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRN 315
>pdb|4A4M|A Chain A, Crystal Structure Of The Light-Activated Constitutively
Active N2c,M257y,D282c Rhodopsin Mutant In Complex With
A Peptide Resembling The C-Terminus Of The
Galpha-Protein Subunit (Gact)
Length = 349
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 58/274 (21%), Positives = 104/274 (37%), Gaps = 14/274 (5%)
Query: 50 NFLVIWIVATSRRMQNVTNCFIANLALADIVIGLFAIPFQFQAALLQRWNLPNFMCPFCP 109
NFL +++ ++++ N + NLA+AD+ + +L + C
Sbjct: 56 NFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEG 115
Query: 110 FVQCXXXXXXXXXXXAIAVDRHRAILNPLSA-RPSKLRAKICIFGIWTLSSFLAAPMAIA 168
F +A++R+ + P+S R + A + + W ++ AAP +
Sbjct: 116 FFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVG 175
Query: 169 TGVTMEEEYTDPAGRIHLKPFCTNIHLSDDTMILYRRVLAVVQYAIPLSVISFVYARMAL 228
+ E G + P + ++++ ++Y + VV + IPL VI F Y ++
Sbjct: 176 WSRYIPEGMQCSCGIDYYTP---HEETNNESFVIY---MFVVHFIIPLIVIFFCYGQLVF 229
Query: 229 RLWGSKAPGNAQDSRDATXXXXXXXXXXXXXXXXALFAICWLPLQTYNVLQGIFPSINSY 288
+ AQ AT F ICWLP V IF S
Sbjct: 230 TV----KEAAAQQQESATTQKAEKEVTRMVIIYVIAFLICWLPYA--GVAFYIFTHQGS- 282
Query: 289 HYINIVFFCCDWLAMSNSCYNPFIYGIYNDKERK 322
+ I + A +++ YNP IY + N + R
Sbjct: 283 CFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRN 316
>pdb|2LNL|A Chain A, Structure Of Human Cxcr1 In Phospholipid Bilayers
Length = 296
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 71/298 (23%), Positives = 118/298 (39%), Gaps = 43/298 (14%)
Query: 39 YGTISVLAVVGNFLVIWIVATSRRMQNVTNCFIANLALADIVIGLFAIPFQFQAALLQRW 98
Y + +L+++GN LV+ ++ SR ++VT+ ++ NLALAD++ +P + A+ + W
Sbjct: 18 YALVFLLSLLGNSLVMLVILYSRVGRSVTDVYLLNLALADLLF-ALTLPI-WAASKVNGW 75
Query: 99 NLPNFMCPFCPFVQCXXXXXXXXXXXAIAVDRHRAILNPLSARPSKLR-AKICIFGIWTL 157
F+C ++ I+VDR+ AI++ K K G W L
Sbjct: 76 IFGTFLCKVVSLLKEVNFYSGILLLACISVDRYLAIVHATRTLTQKRHLVKFVCLGCWGL 135
Query: 158 SSFLAAPMAIATGVTMEEEYTDPAGRIHLKPFCTNIHLSDDTMILYRRVLAVV----QYA 213
S L+ P + + Y P P C + L +DT +R VL ++ +
Sbjct: 136 SMNLSLPFFL-----FRQAY-HPNNS---SPVCYEV-LGNDTAK-WRMVLRILPHTFGFI 184
Query: 214 IPLSVISFVYARMALRLWGSKAPGNAQDSRDATXXXXXXXXXXXXXXXXALFAICWLPLQ 273
+PL V+ F Y L+ + + R +F +CWLP
Sbjct: 185 VPLFVMLFCYGFTLRTLFKAHMGQKHRAMR-------------VIFAVVLIFLLCWLP-- 229
Query: 274 TYNVL---------QGIFPSINSYHYINIVFFCCDWLAMSNSCYNPFIYGIYNDKERK 322
YN++ Q I S + I + L +SC NP IY R
Sbjct: 230 -YNLVLLADTLMRTQVIQESCERRNNIGRALDATEILGFLHSCLNPIIYAFIGQNFRH 286
>pdb|2Z73|A Chain A, Crystal Structure Of Squid Rhodopsin
pdb|2Z73|B Chain B, Crystal Structure Of Squid Rhodopsin
pdb|3AYM|A Chain A, Crystal Structure Of The Batho Intermediate Of Squid
Rhodopsin
pdb|3AYM|B Chain B, Crystal Structure Of The Batho Intermediate Of Squid
Rhodopsin
pdb|3AYN|A Chain A, Crystal Structure Of Squid Isorhodopsin
pdb|3AYN|B Chain B, Crystal Structure Of Squid Isorhodopsin
Length = 448
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 45/111 (40%), Gaps = 3/111 (2%)
Query: 55 WIVATSRRMQNVTNCFIANLALADIVIGLF-AIPFQFQAALLQRWNLPNFMCPFCPFVQC 113
++ ++ +Q N FI NLA +D L P + L++W C F+
Sbjct: 57 YLFTKTKSLQTPANMFIINLAFSDFTFSLVNGFPLMTISCFLKKWIFGFAACKVYGFIGG 116
Query: 114 XXXXXXXXXXXAIAVDRHRAILNPLSA--RPSKLRAKICIFGIWTLSSFLA 162
I++DR+ I P++A + S RA I I +W S A
Sbjct: 117 IFGFMSIMTMAMISIDRYNVIGRPMAASKKMSHRRAFIMIIFVWLWSVLWA 167
>pdb|2ZIY|A Chain A, Crystal Structure Of Squid Rhodopsin
Length = 372
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 45/111 (40%), Gaps = 3/111 (2%)
Query: 55 WIVATSRRMQNVTNCFIANLALADIVIGLF-AIPFQFQAALLQRWNLPNFMCPFCPFVQC 113
++ ++ +Q N FI NLA +D L P + L++W C F+
Sbjct: 56 YLFTKTKSLQTPANMFIINLAFSDFTFSLVNGFPLMTISCFLKKWIFGFAACKVYGFIGG 115
Query: 114 XXXXXXXXXXXAIAVDRHRAILNPLSA--RPSKLRAKICIFGIWTLSSFLA 162
I++DR+ I P++A + S RA I I +W S A
Sbjct: 116 IFGFMSIMTMAMISIDRYNVIGRPMAASKKMSHRRAFIMIIFVWLWSVLWA 166
>pdb|4GRV|A Chain A, The Crystal Structure Of The Neurotensin Receptor Nts1 In
Complex With Neurotensin (8-13)
Length = 510
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 46/206 (22%), Positives = 89/206 (43%), Gaps = 14/206 (6%)
Query: 33 ILLSVFYGTISVLAVVGNFLVIWIVATSRRMQNVTNCFIANLALADIVIGLFA---IPFQ 89
+L++ Y + V+ VGN + ++ +A + +Q++ + +L + L +P +
Sbjct: 33 VLVTAIYLALFVVGTVGNSVTLFTLARKKSLQSLQSTVHYHLGSLALSDLLILLLAMPVE 92
Query: 90 FQAALL--QRWNLPNFMCPFCPFVQCXXXXXXXXXXXAIAVDRHRAILNPLSARP--SKL 145
+ W + C F++ +++V R+ AI +P A+ S+
Sbjct: 93 LYNFIWVHHPWAFGDAGCRGYYFLRDACTYATALNVASLSVARYLAICHPFKAKTLMSRS 152
Query: 146 RAKICIFGIWTLSSFLAAPMAIATGV-TMEEEYTDPAGRIHLKPFCTNIHLSDDTMILYR 204
R K I IW S+ LA PM G+ + T P G + CT I + T+ +
Sbjct: 153 RTKKFISAIWLASALLAIPMLFTMGLQNRSADGTHPGGLV-----CTPI-VDTATVKVVI 206
Query: 205 RVLAVVQYAIPLSVISFVYARMALRL 230
+V + + P+ VIS + +A +L
Sbjct: 207 QVNTFMSFLFPMLVISILNTVIANKL 232
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.328 0.140 0.444
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,144,808
Number of Sequences: 62578
Number of extensions: 267501
Number of successful extensions: 624
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 503
Number of HSP's gapped (non-prelim): 68
length of query: 324
length of database: 14,973,337
effective HSP length: 99
effective length of query: 225
effective length of database: 8,778,115
effective search space: 1975075875
effective search space used: 1975075875
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 51 (24.3 bits)