Query psy5192
Match_columns 324
No_of_seqs 240 out of 1478
Neff 11.2
Searched_HMMs 46136
Date Fri Aug 16 19:42:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5192.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5192hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4219|consensus 100.0 3.4E-49 7.4E-54 317.3 21.9 300 23-324 26-329 (423)
2 PHA03234 DNA packaging protein 100.0 4.1E-44 9E-49 299.7 16.6 273 28-324 28-310 (338)
3 PHA03235 DNA packaging protein 100.0 1.7E-40 3.7E-45 283.8 17.7 279 28-324 28-317 (409)
4 PHA02834 chemokine receptor-li 100.0 1.2E-40 2.7E-45 279.1 14.5 269 30-324 26-303 (323)
5 PHA02638 CC chemokine receptor 100.0 6.4E-39 1.4E-43 275.4 19.6 278 31-324 97-391 (417)
6 PHA03087 G protein-coupled che 100.0 7.5E-38 1.6E-42 264.9 22.0 273 27-323 35-316 (335)
7 KOG4220|consensus 100.0 1.2E-39 2.6E-44 262.0 5.1 281 30-324 28-481 (503)
8 PF00001 7tm_1: 7 transmembran 100.0 6E-36 1.3E-40 244.4 11.7 254 49-313 1-257 (257)
9 KOG2087|consensus 99.9 3.6E-27 7.8E-32 188.6 3.4 266 33-323 25-299 (363)
10 PF10320 7TM_GPCR_Srsx: Serpen 99.9 6.5E-25 1.4E-29 177.3 10.1 252 44-324 2-253 (257)
11 PF10324 7TM_GPCR_Srw: Serpent 99.9 9.4E-22 2E-26 165.3 17.9 273 41-323 5-310 (318)
12 PF10328 7TM_GPCR_Srx: Serpent 99.9 7.4E-21 1.6E-25 156.0 14.5 263 42-323 3-268 (274)
13 PF05296 TAS2R: Mammalian tast 99.7 1.5E-16 3.3E-21 131.3 13.9 282 30-324 4-295 (303)
14 PF10323 7TM_GPCR_Srv: Serpent 99.7 7.1E-17 1.5E-21 132.3 10.4 260 45-324 7-277 (283)
15 PF05462 Dicty_CAR: Slime mold 99.6 3.1E-14 6.8E-19 116.2 15.4 250 35-322 9-262 (303)
16 PF10321 7TM_GPCR_Srt: Serpent 99.6 1.4E-13 3E-18 113.1 15.0 263 29-324 29-301 (313)
17 PF03402 V1R: Vomeronasal orga 99.4 2.5E-12 5.5E-17 102.3 9.5 249 62-322 6-261 (265)
18 PF10326 7TM_GPCR_Str: Serpent 99.1 5.7E-11 1.2E-15 99.5 4.0 274 39-324 5-306 (307)
19 PF10317 7TM_GPCR_Srd: Serpent 99.1 1.7E-09 3.8E-14 89.6 12.3 272 37-324 3-290 (292)
20 PF10292 7TM_GPCR_Srab: Serpen 99.1 1.2E-08 2.6E-13 85.7 16.1 277 29-323 14-299 (324)
21 PF11710 Git3: G protein-coupl 99.0 8.2E-09 1.8E-13 79.8 13.4 162 61-235 30-199 (201)
22 PF02118 Srg: Srg family chemo 99.0 2.8E-09 6.2E-14 87.9 11.7 257 41-323 6-274 (275)
23 PF10327 7TM_GPCR_Sri: Serpent 99.0 3.7E-08 8.1E-13 81.7 16.9 274 34-323 10-302 (303)
24 PF02101 Ocular_alb: Ocular al 98.9 1.9E-07 4E-12 76.7 16.5 258 36-316 30-314 (405)
25 PF10319 7TM_GPCR_Srj: Serpent 98.7 1.1E-06 2.4E-11 71.1 16.1 273 39-324 11-310 (310)
26 PF10316 7TM_GPCR_Srbc: Serpen 98.7 1.7E-06 3.8E-11 70.0 16.1 117 33-149 6-125 (273)
27 PF02117 7TM_GPCR_Sra: Serpent 98.5 1.4E-05 2.9E-10 67.2 16.4 108 34-142 22-138 (328)
28 PF00002 7tm_2: 7 transmembran 98.5 5.6E-08 1.2E-12 78.6 1.9 130 37-169 5-134 (242)
29 PF10318 7TM_GPCR_Srh: Serpent 98.3 1.6E-05 3.4E-10 66.6 13.1 274 35-323 6-295 (302)
30 PF04789 DUF621: Protein of un 98.2 3.5E-05 7.6E-10 60.7 12.2 237 64-322 46-290 (305)
31 PF10322 7TM_GPCR_Sru: Serpent 98.1 0.00027 5.9E-09 58.4 16.0 205 102-323 100-305 (307)
32 KOG4193|consensus 98.1 2E-05 4.3E-10 70.9 9.6 242 40-323 327-574 (610)
33 KOG4564|consensus 97.8 0.00021 4.5E-09 61.8 10.4 235 54-323 166-412 (473)
34 PF01534 Frizzled: Frizzled/Sm 97.8 0.0045 9.8E-08 51.8 16.9 137 35-171 11-160 (328)
35 PF03125 Sre: C. elegans Sre G 97.6 0.0057 1.2E-07 52.6 16.6 117 30-146 24-164 (365)
36 PF02076 STE3: Pheromone A rec 97.3 0.011 2.4E-07 48.5 13.8 213 43-279 4-221 (283)
37 PF02175 7TM_GPCR_Srb: Serpent 96.4 0.15 3.2E-06 40.0 11.9 47 100-146 80-126 (236)
38 PF11970 Git3_C: G protein-cou 96.3 0.024 5.2E-07 36.1 6.2 71 248-321 4-75 (76)
39 PF03383 Serpentine_r_xa: Caen 94.1 0.019 4.1E-07 41.9 0.7 62 105-166 44-107 (153)
40 PF06681 DUF1182: Protein of u 90.9 0.42 9E-06 36.6 4.1 97 38-139 46-151 (226)
41 PF06454 DUF1084: Protein of u 85.9 19 0.0004 29.9 19.0 53 28-83 24-77 (281)
42 KOG4289|consensus 81.8 6.1 0.00013 39.8 7.2 59 101-163 2222-2280(2531)
43 PF10325 7TM_GPCR_Srz: Serpent 70.0 59 0.0013 26.6 10.4 29 110-138 87-115 (267)
44 PF00003 7tm_3: 7 transmembran 62.9 21 0.00046 28.5 5.5 30 99-128 50-79 (238)
45 PF15086 UPF0542: Uncharacteri 44.1 25 0.00055 21.9 2.2 29 206-234 23-52 (74)
46 PF06695 Sm_multidrug_ex: Puta 43.4 98 0.0021 21.9 5.5 61 206-266 21-81 (121)
47 PF06814 Lung_7-TM_R: Lung sev 43.3 2E+02 0.0042 24.1 16.4 21 212-232 190-211 (295)
48 PF05296 TAS2R: Mammalian tast 40.5 2.2E+02 0.0048 23.9 9.0 56 212-267 193-248 (303)
49 PF09889 DUF2116: Uncharacteri 39.0 69 0.0015 19.3 3.5 16 252-267 36-51 (59)
50 PF12963 DUF3852: Protein of u 37.6 1.3E+02 0.0028 20.4 5.8 77 145-235 3-79 (111)
51 PF13853 7tm_4: Olfactory rece 35.4 1.1 2.4E-05 32.8 -5.6 55 206-272 60-114 (144)
52 TIGR02976 phageshock_pspB phag 29.6 1.6E+02 0.0034 18.9 4.4 15 212-226 6-20 (75)
53 PF15050 SCIMP: SCIMP protein 28.7 2.1E+02 0.0046 20.1 5.3 29 206-234 11-39 (133)
54 PF05915 DUF872: Eukaryotic pr 26.7 2.3E+02 0.005 19.9 5.0 27 30-56 41-67 (115)
55 KOG1056|consensus 26.3 6.5E+02 0.014 25.0 15.4 46 32-77 558-610 (878)
56 PF00001 7tm_1: 7 transmembran 24.7 3.4E+02 0.0073 21.1 8.6 82 201-282 150-231 (257)
57 PF05478 Prominin: Prominin; 23.2 7.3E+02 0.016 24.5 9.5 73 202-278 411-483 (806)
58 PRK09458 pspB phage shock prot 23.1 2.1E+02 0.0046 18.2 4.8 25 211-235 5-29 (75)
59 PF00558 Vpu: Vpu protein; In 22.6 1.1E+02 0.0024 19.8 2.6 20 215-234 15-34 (81)
60 PF05241 EBP: Emopamil binding 22.0 3E+02 0.0064 21.4 5.4 36 199-234 157-192 (194)
No 1
>KOG4219|consensus
Probab=100.00 E-value=3.4e-49 Score=317.32 Aligned_cols=300 Identities=41% Similarity=0.734 Sum_probs=258.6
Q ss_pred eccccchHHHHHHHHHHHHHHHHHhhhhheeeeeeeecccccchhhHHHHHHHHHHHHHHHhhhhHHHHHHhhccCCCCc
Q psy5192 23 GIYKVPTSIIILLSVFYGTISVLAVVGNFLVIWIVATSRRMQNVTNCFIANLALADIVIGLFAIPFQFQAALLQRWNLPN 102 (324)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~i~~~~gi~~N~~vl~~i~~~~~~~~~~~~~l~~La~~dll~~~~~~~~~~~~~~~~~~~~~~ 102 (324)
+.+..+...+.+.++++.++.+++++||.++++++..+|++|+.+|+++.|||+||++.+++..++........+|.+|.
T Consensus 26 ~~f~lp~~~~~~wai~yg~l~~vAv~GN~iVlwIil~hrrMRtvtnyfL~NLAfADl~~s~Fn~~f~f~yal~~~W~~G~ 105 (423)
T KOG4219|consen 26 GLFVLPAWQQALWAIAYGLLVFVAVVGNLIVLWIILAHRRMRTVTNYFLVNLAFADLSMSIFNTVFNFQYALHQEWYFGS 105 (423)
T ss_pred CcccCCHHHHHHHHHHHHHHHHHHHhcCceEEEEEeehhehhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcccccc
Confidence 35778889999999999999999999999999999999999999999999999999999999999999888889999999
Q ss_pred cccccchhhhHHHHHHHHHHHHHHHHHHHhHhhccCCcCCCccccceeehhHHHHHHHhhhhhheeeceeeeeeecCCCC
Q psy5192 103 FMCPFCPFVQCLTVTVSVLTLTAIAVDRHRAILNPLSARPSKLRAKICIFGIWTLSSFLAAPMAIATGVTMEEEYTDPAG 182 (324)
Q Consensus 103 ~~C~~~~~~~~~~~~~s~~~~~~is~dRy~~i~~p~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (324)
..|++..++......+|++++++||+|||.||.+|++.+.+++..+.+++.+|+.+++.+.|..+.........++....
T Consensus 106 f~C~f~nf~~itav~vSVfTlvAiA~DRy~AIi~Pl~~r~s~r~sk~iIllIW~lA~l~a~P~~l~s~v~~~~~~d~~~~ 185 (423)
T KOG4219|consen 106 FYCRFVNFFPITAVFVSVFTLVAIAIDRYMAIIHPLQPRPSRRSSKIIILLIWALALLLALPQLLYSSVEELYLYDGESR 185 (423)
T ss_pred ceeeeccccchhhhhHhHHHHHHHHHHHHHHHhhhcccCCCCcceeehhHHHHHHHHHHhccceeeeeeEEeeccCCcce
Confidence 99999999999999999999999999999999999999999999999999999999999999988877655544321111
Q ss_pred cc----cccccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccccHHHHhhhhhHHHHH
Q psy5192 183 RI----HLKPFCTNIHLSDDTMILYRRVLAVVQYAIPLSVISFVYARMALRLWGSKAPGNAQDSRDATLMKNKKKVIKML 258 (324)
Q Consensus 183 ~~----~~~~~c~~~~~~~~~~~~~~~~~~~~~~~ip~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (324)
.. .....|... ......+.|.....++.+++|++++...|..|.+++|.++..++.+. ++.++.++++|+.|++
T Consensus 186 ~~~~~~~pe~~~~~~-~~~~~~~~y~~vl~~lqYflPliVl~~~Yt~iav~LW~~~~~gd~~d-~~~~~~kak~K~vkml 263 (423)
T KOG4219|consen 186 VVCVTAWPEHVCPTE-NESLLMQGYNYVLLFLQYFLPLIVLGLAYTVIAVTLWGRRIPGDQQD-RKHEQLKAKKKVVKML 263 (423)
T ss_pred EEEEEecccccCCcc-hhhhhhcceeeeehhHHHHHHHHHHHHHHHHHHHHHHhccCccchhc-hhhHHHHHHHHHHHHH
Confidence 10 011112110 01111123777888999999999999999999999999986665544 5556678889999999
Q ss_pred HHHHHHHHHhhhhHHHHHHHhhhccCccchhHHHHHHHHHHHhhhccccccceeeeecCcccccCC
Q psy5192 259 VIVVALFAICWLPLQTYNVLQGIFPSINSYHYINIVFFCCDWLAMSNSCYNPFIYGIYNDKERKKN 324 (324)
Q Consensus 259 ~~~~~~f~~~~~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~npiiy~~~~~~~R~~~ 324 (324)
++++..|.+||+|+.++.++....++..+.......+....|+++.|++.||+||++.|++||.+|
T Consensus 264 iiVV~~FaicWlPyh~y~il~~~~~~i~~~k~i~~vyl~~~WLaMSst~yNPiIY~~lN~Rfr~gf 329 (423)
T KOG4219|consen 264 IIVVVIFAICWLPYHIYFILNATNPEINRKKFIQQVYLAIYWLAMSSTCYNPIIYCFLNKRFRGGF 329 (423)
T ss_pred HHHHHHHHHhccChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhccHhhhhhHHHHHHHH
Confidence 999999999999999999998888888888888899999999999999999999999999999764
No 2
>PHA03234 DNA packaging protein UL33; Provisional
Probab=100.00 E-value=4.1e-44 Score=299.73 Aligned_cols=273 Identities=18% Similarity=0.170 Sum_probs=203.4
Q ss_pred chHHHHHHHHHHHHHHHHHhhhhheeeeee--eecccccchhhHHHHHHHHHHHHHHHhhhhHHHHHHhhccCCCCcccc
Q psy5192 28 PTSIIILLSVFYGTISVLAVVGNFLVIWIV--ATSRRMQNVTNCFIANLALADIVIGLFAIPFQFQAALLQRWNLPNFMC 105 (324)
Q Consensus 28 ~~~~~~~~~~~~~i~~~~gi~~N~~vl~~i--~~~~~~~~~~~~~l~~La~~dll~~~~~~~~~~~~~~~~~~~~~~~~C 105 (324)
.+..+.+..+++.+++++|++||+++++++ .+++++|+++|+++.|||++|++.++ ..|..... ...+|.+|+..|
T Consensus 28 ~~~~~~~~~~~y~~vf~~gl~gN~lvl~v~~~~~~~~~rt~tn~fi~NLAvaDLL~~l-~lp~~~~~-~~~~w~fG~~lC 105 (338)
T PHA03234 28 LKKAQILESAINGIMLTLIIPMIIIVICTLIIYHKVAKHNATSFYLITLFASDFLHML-CVFFLTLN-REALFNFNQAFC 105 (338)
T ss_pred HHHHHHHhhHHHHHHHHHHhhhHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHH-HHHHHHHH-HhCCccCchhHH
Confidence 345778889999999999999999999854 45556689999999999999999965 45554443 345799999999
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHHHHhHhhccCCcCCCccccceeehhHHHHHHHhhhhhheeeceeeeeeecCCCCccc
Q psy5192 106 PFCPFVQCLTVTVSVLTLTAIAVDRHRAILNPLSARPSKLRAKICIFGIWTLSSFLAAPMAIATGVTMEEEYTDPAGRIH 185 (324)
Q Consensus 106 ~~~~~~~~~~~~~s~~~~~~is~dRy~~i~~p~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (324)
++.+++......+|++++++||+|||++|++|.+++.++++....+++.|+.+++.++|.+........+. .
T Consensus 106 k~~~~~~~~~~~~Si~~L~~ISiDRY~aIv~p~~~~~~~~~~~~~i~~~Wi~s~l~~~P~l~~~~~~~~~~--~------ 177 (338)
T PHA03234 106 QCVLFIYHASCSYSICMLAIIATIRYKTLHRRKKNDKKNNHIGRNIGILFLASAMCAIPAALFVKTEGKKG--N------ 177 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHeeeechhhhhhhhhhHHHHHHHHHHHHHHHHhhHhHeeeeeecCC--C------
Confidence 99999999999999999999999999999999876543344444556679999999999876443221110 0
Q ss_pred ccccccccCCCchhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccccHHHHhhhhhHHHHHHHHH
Q psy5192 186 LKPFCTNIHLSDDTMILYRR---VLAVVQYAIPLSVISFVYARMALRLWGSKAPGNAQDSRDATLMKNKKKVIKMLVIVV 262 (324)
Q Consensus 186 ~~~~c~~~~~~~~~~~~~~~---~~~~~~~~ip~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (324)
...|...+.+++....+.. ....+++++|++++.++|.+|.+++++++ .++++|++|++++++
T Consensus 178 -~~~C~~~~~~~~~~~~~~~~~~~~~~~~f~iPl~im~~cY~~I~~~L~~~~-------------~~~~~k~~k~i~~vv 243 (338)
T PHA03234 178 -YGKCNIHISSKKAYDLFIAIKIVFCFIWGIFPTMIFSFFYVIFCKALHALT-------------EKKHKKTLFFIRILI 243 (338)
T ss_pred -CCcCcccCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-------------hhhhhhhhhHHHHHH
Confidence 1237554433322222221 22334568999999999999999987631 134678999999999
Q ss_pred HHHHHhhhhHHHHHHHhhhcc-----CccchhHHHHHHHHHHHhhhccccccceeeeecCcccccCC
Q psy5192 263 ALFAICWLPLQTYNVLQGIFP-----SINSYHYINIVFFCCDWLAMSNSCYNPFIYGIYNDKERKKN 324 (324)
Q Consensus 263 ~~f~~~~~P~~i~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~~~npiiy~~~~~~~R~~~ 324 (324)
++|++||+|+.+..++..... +............++..++++||++||+||++.+++||+++
T Consensus 244 ~vF~iCWlPy~iv~l~~~~~~~~~~~~c~~~~~~~~~~~v~~~La~~nsclNPiIY~f~~~~FR~~~ 310 (338)
T PHA03234 244 LSFLCIQIPNIAILICEIAFLYIANNSCFGLAQREILQIIIRLMPEIHCFSNPLVYAFTGGDFRLRF 310 (338)
T ss_pred HHHHHHHhHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhHHHHHHH
Confidence 999999999998776543321 11111223345567888999999999999999999999864
No 3
>PHA03235 DNA packaging protein UL33; Provisional
Probab=100.00 E-value=1.7e-40 Score=283.78 Aligned_cols=279 Identities=16% Similarity=0.201 Sum_probs=202.8
Q ss_pred chHHHHHHHHHHHHHHHHHhhhhheeeeeeee-cccc-cchhhHHHHHHHHHHHHHHHhhhhHHHHHHhhccCCCCcccc
Q psy5192 28 PTSIIILLSVFYGTISVLAVVGNFLVIWIVAT-SRRM-QNVTNCFIANLALADIVIGLFAIPFQFQAALLQRWNLPNFMC 105 (324)
Q Consensus 28 ~~~~~~~~~~~~~i~~~~gi~~N~~vl~~i~~-~~~~-~~~~~~~l~~La~~dll~~~~~~~~~~~~~~~~~~~~~~~~C 105 (324)
....+.+..+++.+++++|++||+++++++.+ +|+. ++..++|+.|||++|++. ++.+|+.+... ...|..+...|
T Consensus 28 ~~~~~~~~~~~~~li~vvGiigN~lVL~~~~~~~r~~~~~~~~~~I~NLAvsDLl~-l~~lP~~i~~~-~~~~~~g~~~C 105 (409)
T PHA03235 28 LSAARTTETFINLLIISVGGPLNLIVLVTQLLANRVHGFSTPTLYMTNLYLANLLT-VFVLPFIMLSN-QGLLSGSVAGC 105 (409)
T ss_pred hhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCccHHHHHHHHHHHHHH-HHHHHHHHHhc-CccccCCCCee
Confidence 35567789999999999999999999987543 3332 456679999999999987 56777665321 12233446899
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHHHHhHhhccCCcCC-CccccceeehhHHHHHHHhhhhhheeeceeeeeeecCCCCcc
Q psy5192 106 PFCPFVQCLTVTVSVLTLTAIAVDRHRAILNPLSARP-SKLRAKICIFGIWTLSSFLAAPMAIATGVTMEEEYTDPAGRI 184 (324)
Q Consensus 106 ~~~~~~~~~~~~~s~~~~~~is~dRy~~i~~p~~~~~-~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (324)
++.+++...+..+|++++++||+|||.+|++|.+++. +++++..+++++|+.+++.++|..+............. .
T Consensus 106 k~~~~l~~~~~~~Si~tL~~ISiDRY~aI~~p~~~~~~~~~~a~~ii~~iWi~sll~s~P~~~~~~~~~~~~~~~~---~ 182 (409)
T PHA03235 106 KFASLLYYASCTVGFATVALIAADRYRVIHQRTRARSSAYRSTYKILGLTWFASLICSGPAPVYTTVVAHDDVDPE---A 182 (409)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHeechhhccCcccchhhhhHHHHHHHHHHHHHHHHHHHhhhhccccCcC---C
Confidence 9999999999999999999999999999999986554 67788888999999999999987654322111100000 0
Q ss_pred cccccccccCCCchh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccccHHHHhhhhhHHHHHHHH
Q psy5192 185 HLKPFCTNIHLSDDT---MILYRRVLAVVQYAIPLSVISFVYARMALRLWGSKAPGNAQDSRDATLMKNKKKVIKMLVIV 261 (324)
Q Consensus 185 ~~~~~c~~~~~~~~~---~~~~~~~~~~~~~~ip~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (324)
.....|......+.. ...|.....++.+++|+++++++|.+|.++++++++ ++++|..+++.++
T Consensus 183 ~~~~~C~~~~~~~~~~~~~~~y~i~l~i~~f~iPl~im~~~Y~~I~~~l~~~~~-------------~~~~k~~~~v~ii 249 (409)
T PHA03235 183 PGYETCVIYFRADQVKTVLSTFKVLLTLVWGIAPVVMMTWFYTFFYRTLKRASY-------------KKRSRTLTFVCIL 249 (409)
T ss_pred CCcceeeEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-------------hcchhhhhhHHHH
Confidence 001236543332221 224555566777899999999999999999987532 1245677888888
Q ss_pred HHHHHHhhhhHHHHHHHhhhcc-----CccchhHHHHHHHHHHHhhhccccccceeeeecCcccccCC
Q psy5192 262 VALFAICWLPLQTYNVLQGIFP-----SINSYHYINIVFFCCDWLAMSNSCYNPFIYGIYNDKERKKN 324 (324)
Q Consensus 262 ~~~f~~~~~P~~i~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~~~npiiy~~~~~~~R~~~ 324 (324)
++.|++||+|+.+..++..... +............+..+++++|+++||+||++.+++||+++
T Consensus 250 vv~F~iCWlPy~v~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~La~~ns~lNPiIY~~~~~~FRk~~ 317 (409)
T PHA03235 250 LLSFLCLQTPFVAIMIFDSYATLIWPSDCEHINLRDAVSTLSRLVPNLHCLLNPILYAFLGNDFLKRF 317 (409)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHHHHHHHHHHhHhHHHHHHhhHHHHHHH
Confidence 9999999999999877654321 11112223345567788999999999999999999999864
No 4
>PHA02834 chemokine receptor-like protein; Provisional
Probab=100.00 E-value=1.2e-40 Score=279.07 Aligned_cols=269 Identities=21% Similarity=0.410 Sum_probs=201.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhheeeeeeeecccccchhhHHHHHHHHHHHHHHHhhhhHHHHHHhhccCCCCccccccch
Q psy5192 30 SIIILLSVFYGTISVLAVVGNFLVIWIVATSRRMQNVTNCFIANLALADIVIGLFAIPFQFQAALLQRWNLPNFMCPFCP 109 (324)
Q Consensus 30 ~~~~~~~~~~~i~~~~gi~~N~~vl~~i~~~~~~~~~~~~~l~~La~~dll~~~~~~~~~~~~~~~~~~~~~~~~C~~~~ 109 (324)
....+..+++.++.++|++||+++++++.++++ +++.|+++.|||++|++. ...+|..+... .++|..|+..|++.+
T Consensus 26 ~~~~~~~~~~~li~v~~~~gN~lVi~vi~~~~~-~~~~n~~i~nLAiaDll~-~~~lP~~i~~~-~~~w~~g~~~C~~~~ 102 (323)
T PHA02834 26 DVNYFVIVFYILLFIFGLIGNVLVIAVLIVKRF-MFVVDVYLFNIAMSDLML-VFSFPFIIHND-LNEWIFGEFMCKLVL 102 (323)
T ss_pred chhhhHHHHHHHHHHHHHhhHHHHHHHHHhccc-cchhhhhhHHHHHHHHHH-HHHHHHHHHHH-cCCcCCcchHHHhHH
Confidence 455667899999999999999999988877555 467899999999999986 56788766544 357899999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhHhhccCCcCC-CccccceeehhHHHHHHHhhhhhheeeceeeeeeecCCCCcccccc
Q psy5192 110 FVQCLTVTVSVLTLTAIAVDRHRAILNPLSARP-SKLRAKICIFGIWTLSSFLAAPMAIATGVTMEEEYTDPAGRIHLKP 188 (324)
Q Consensus 110 ~~~~~~~~~s~~~~~~is~dRy~~i~~p~~~~~-~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (324)
++...+..+|++++++||+|||.+|++|.+++. +.+++...++.+|+.+++.++|+.........+ . ..
T Consensus 103 ~~~~~~~~~Si~tL~~IsidRY~aI~~P~~~~~~~~~~~~~~i~~iWi~s~l~~~P~~~~~~~~~~~---~-------~~ 172 (323)
T PHA02834 103 GVYFVGFFSNMFFVTLISIDRYILVVNATKIKNKSISLSVLLSVAAWVCSVILSMPAMVLYYVDNTD---N-------LK 172 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhheeCchhccCCccchHHHHHHHHHHHHHHHHhhHHHHHHhccCC---C-------ce
Confidence 999999999999999999999999999997654 445566677889999999999887643321110 0 11
Q ss_pred cccccCCCch--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccccHHHHhhhhhHHHHHHHHHHHHH
Q psy5192 189 FCTNIHLSDD--TMILYRRVLAVVQYAIPLSVISFVYARMALRLWGSKAPGNAQDSRDATLMKNKKKVIKMLVIVVALFA 266 (324)
Q Consensus 189 ~c~~~~~~~~--~~~~~~~~~~~~~~~ip~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 266 (324)
.|.....+.. ....+.....+..+++|+++++++|.+|.++++++++ ++++|..|+++.+++.|+
T Consensus 173 ~C~~~~~~~~~~~~~~~~~~~~i~~f~iPl~ii~~~Y~~I~~~l~~~~~-------------~~~~k~~k~~~~vv~~F~ 239 (323)
T PHA02834 173 QCIFNDYHENFSWSAFFNFEINIFGIVIPLIILIYCYSKILYTLKNCKN-------------KNKTRSIKIILTVVTFTV 239 (323)
T ss_pred EEeccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-------------cccceEEeehhHHHHHHH
Confidence 2642222211 1222333445778899999999999999999987642 124577889999999999
Q ss_pred HhhhhHHHHHHHhhhccCc----c--chhHHHHHHHHHHHhhhccccccceeeeecCcccccCC
Q psy5192 267 ICWLPLQTYNVLQGIFPSI----N--SYHYINIVFFCCDWLAMSNSCYNPFIYGIYNDKERKKN 324 (324)
Q Consensus 267 ~~~~P~~i~~~~~~~~~~~----~--~~~~~~~~~~~~~~l~~~~~~~npiiy~~~~~~~R~~~ 324 (324)
+||+|+.+..++..+.... + ..+.......+..++++.||++||+||++.+++||+++
T Consensus 240 icWlPy~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~ns~iNPiIY~~~~~~fR~~~ 303 (323)
T PHA02834 240 VFWVPFNIVLFINSLQSVGLIDIGCYHFKKIVYSIDIAELISFVHCCVNPIIYAFVGKNFKKVF 303 (323)
T ss_pred HHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHhhccccHHHHHHhcHHHHHHH
Confidence 9999999887765442211 0 11111223456778999999999999999999999874
No 5
>PHA02638 CC chemokine receptor-like protein; Provisional
Probab=100.00 E-value=6.4e-39 Score=275.40 Aligned_cols=278 Identities=22% Similarity=0.414 Sum_probs=207.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhheeeeeeeecccccchhhHHHHHHHHHHHHHHHhhhhHHHHHHhhccCCCCccccccchh
Q psy5192 31 IIILLSVFYGTISVLAVVGNFLVIWIVATSRRMQNVTNCFIANLALADIVIGLFAIPFQFQAALLQRWNLPNFMCPFCPF 110 (324)
Q Consensus 31 ~~~~~~~~~~i~~~~gi~~N~~vl~~i~~~~~~~~~~~~~l~~La~~dll~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~ 110 (324)
......+++.+++++|++||+++++++. +|++|+++++++.|||++|++. ++..|+.+... .++|.+++..|++..+
T Consensus 97 ~~~~l~~~y~lvfvlgliGN~LVl~il~-~k~lrt~t~i~llnLAisDLl~-~l~lPf~i~~~-~~~W~fg~~~Ck~~~~ 173 (417)
T PHA02638 97 ISEYIKIFYIIIFILGLFGNAAIIMILF-CKKIKTITDIYIFNLAISDLIF-VIDFPFIIYNE-FDQWIFGDFMCKVISA 173 (417)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH-hccCCCHhHHHHHHHHHHHHHH-HHHHHHHHHHH-hccccccccchhhHHH
Confidence 5567788899999999999999997665 4777899999999999999987 45778776554 4678999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhHhhccCCcCC--CccccceeehhHHHHHHHhhhhhheeeceeeeeeecCCCCcccccc
Q psy5192 111 VQCLTVTVSVLTLTAIAVDRHRAILNPLSARP--SKLRAKICIFGIWTLSSFLAAPMAIATGVTMEEEYTDPAGRIHLKP 188 (324)
Q Consensus 111 ~~~~~~~~s~~~~~~is~dRy~~i~~p~~~~~--~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (324)
+...+..++++.++++++|||++|++|.+++. ++++....++.+|+++.+.++|..+..+...........+......
T Consensus 174 l~~~~~~~Si~~L~~isiDRYlaIv~p~~~~~~~~~~~~~i~~~~iW~~s~l~slP~~~~~~~~~~~~~~~~~~~~~~~~ 253 (417)
T PHA02638 174 SYYIGFFSNMFLITLMSIDRYFAILYPISFQKYRTFNIGIILCIISWILSLIITSPAYFIFEASNIIFSAQDSNETISNY 253 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccccceecHhhhHhhHhHHHHHHHHHHHHHHHHhhccccccccccCCCCccCC
Confidence 99999999999999999999999999997654 5556677788899999999999987654332111000000000112
Q ss_pred cccccCCCch-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccccHHHHhhhhhHHHHHHHHHH
Q psy5192 189 FCTNIHLSDD-----TMILYRRVLAVVQYAIPLSVISFVYARMALRLWGSKAPGNAQDSRDATLMKNKKKVIKMLVIVVA 263 (324)
Q Consensus 189 ~c~~~~~~~~-----~~~~~~~~~~~~~~~ip~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (324)
.|......+. ....+.....++.+++|+++++++|.+|++++++.++ ++++|..|+++.+++
T Consensus 254 ~C~~~~~~~~~~~~~~~~~~~~~~~i~~f~lPl~vmi~cY~~I~~~L~~~~~-------------~~k~k~~rli~~ivi 320 (417)
T PHA02638 254 QCTLIEDNEKNNISFLGRILQFEINILGMFIPIIIFAFCYIKIILKLKQLKK-------------SKKTKSIIIVSIIII 320 (417)
T ss_pred eeeeeccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-------------cccchhhhhHHHHHH
Confidence 3643322211 1122333445677889999999999999999976532 225677899999999
Q ss_pred HHHHhhhhHHHHHHHhhhccC----------ccchhHHHHHHHHHHHhhhccccccceeeeecCcccccCC
Q psy5192 264 LFAICWLPLQTYNVLQGIFPS----------INSYHYINIVFFCCDWLAMSNSCYNPFIYGIYNDKERKKN 324 (324)
Q Consensus 264 ~f~~~~~P~~i~~~~~~~~~~----------~~~~~~~~~~~~~~~~l~~~~~~~npiiy~~~~~~~R~~~ 324 (324)
.|++||+|+.+..++...... ............+...++++|+++||++|++.+++|||++
T Consensus 321 ~f~lcW~Py~i~~ll~~~~~~~~~~~~~~~~~c~~~~l~~~~~vt~~la~~~sclNPiIY~f~~~~FR~~l 391 (417)
T PHA02638 321 CSLICWIPLNIVILFATMYSFKGFNSIISEHICGFIKLGYAMMLAEAISLTHCCINPLIYTLIGENFRMHL 391 (417)
T ss_pred HHHHHHhhHHHHHHHHHHHHhhccccccccccccHHHHHHHHHHHHHHHHHHHhhhHHHHHHhCHHHHHHH
Confidence 999999999998777644211 0011123344567778999999999999999999999874
No 6
>PHA03087 G protein-coupled chemokine receptor-like protein; Provisional
Probab=100.00 E-value=7.5e-38 Score=264.90 Aligned_cols=273 Identities=23% Similarity=0.482 Sum_probs=211.7
Q ss_pred cchHHHHHHHHHHHHHHHHHhhhhheeeeeeeecccccchhhHHHHHHHHHHHHHHHhhhhHHHHHHhhccCCCCccccc
Q psy5192 27 VPTSIIILLSVFYGTISVLAVVGNFLVIWIVATSRRMQNVTNCFIANLALADIVIGLFAIPFQFQAALLQRWNLPNFMCP 106 (324)
Q Consensus 27 ~~~~~~~~~~~~~~i~~~~gi~~N~~vl~~i~~~~~~~~~~~~~l~~La~~dll~~~~~~~~~~~~~~~~~~~~~~~~C~ 106 (324)
..+....+...++.+++++|++||+++++++.++ ++|++.++++.+||++|++.++ ..|.........+|..++..|+
T Consensus 35 ~~~~~~~~~~~~~~~i~~~gl~gN~lvl~~~~~~-~~~~~~~~ll~~laisDll~~~-~~~~~~~~~~~~~~~~~~~~C~ 112 (335)
T PHA03087 35 GYDTNSTILIVVYSTIFFFGLVGNIIVIYVLTKT-KIKTPMDIYLLNLAVSDLLFVM-TLPFQIYYYILFQWSFGEFACK 112 (335)
T ss_pred cccchhhHHHHHHHHHHHHHHHhhHhEEeeehhc-cccCchHHHHHHHHHHHHHHHH-hHHHHHHHHhCCCCCCCcHHHH
Confidence 3355677788899999999999999999998887 8899999999999999998755 4665555555677888999999
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHhHhhccCCcCC--CccccceeehhHHHHHHHhhhhhheeeceeeeeeecCCCCcc
Q psy5192 107 FCPFVQCLTVTVSVLTLTAIAVDRHRAILNPLSARP--SKLRAKICIFGIWTLSSFLAAPMAIATGVTMEEEYTDPAGRI 184 (324)
Q Consensus 107 ~~~~~~~~~~~~s~~~~~~is~dRy~~i~~p~~~~~--~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (324)
...++......+|.+++++||+|||++|++|.+++. +.++...+++++|+.+++.++|+...........
T Consensus 113 ~~~~~~~~~~~~S~~~l~~iaidRy~aI~~p~~~~~~~~~~~~~~~~~~iWl~~~~~~~p~~~~~~~~~~~~-------- 184 (335)
T PHA03087 113 IVSGLYYIGFYNSMNFITVMSVDRYIAIVHPVKSNKINTVKYGYIVSLVIWIISIIETTPILFVYTTKKDHE-------- 184 (335)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccchhhhHHHHHHHHHHHHHHhccHhheeeeeccCC--------
Confidence 999999999999999999999999999999998765 7778888888999999999998876654332211
Q ss_pred cccccccccCCCch-h-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccccHHHHhhhhhHHHHHHHHH
Q psy5192 185 HLKPFCTNIHLSDD-T-MILYRRVLAVVQYAIPLSVISFVYARMALRLWGSKAPGNAQDSRDATLMKNKKKVIKMLVIVV 262 (324)
Q Consensus 185 ~~~~~c~~~~~~~~-~-~~~~~~~~~~~~~~ip~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (324)
...|.....+.. . ...+......+.+++|.++++++|.++.+++++++++ ++++|..|++..++
T Consensus 185 --~~~C~~~~~~~~~~~~~~~~~~~~~~~~~lP~~ii~~~y~~i~~~l~~~~~~------------~~~~k~~k~l~~iv 250 (335)
T PHA03087 185 --TLICCMFYNNKTMNWKLFINFEINIIGMLIPLTILLYCYSKILITLKGINKS------------KKNKKAIKLVLIIV 250 (335)
T ss_pred --CceEEecCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc------------hhcchHHHhHHHHH
Confidence 122543333222 1 1222233456678899999999999999999876421 34678899999999
Q ss_pred HHHHHhhhhHHHHHHHhhhc-----cCccchhHHHHHHHHHHHhhhccccccceeeeecCcccccC
Q psy5192 263 ALFAICWLPLQTYNVLQGIF-----PSINSYHYINIVFFCCDWLAMSNSCYNPFIYGIYNDKERKK 323 (324)
Q Consensus 263 ~~f~~~~~P~~i~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~~~npiiy~~~~~~~R~~ 323 (324)
+.|++||.|+.+..++.... +.............+...+..+|+++||+||++++++||++
T Consensus 251 ~~f~i~w~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~ns~~NPiIY~~~~~~fr~~ 316 (335)
T PHA03087 251 ILFVIFWLPFNVSVFVYSLHILHFKSGCKAVKYIQYALHVTEIISLSHCCINPLIYAFVSEFFNKH 316 (335)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHHHHhhhhhHHHHcCHHHHHH
Confidence 99999999998876654321 11122233344556777899999999999999999999976
No 7
>KOG4220|consensus
Probab=100.00 E-value=1.2e-39 Score=262.00 Aligned_cols=281 Identities=25% Similarity=0.414 Sum_probs=228.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhheeeeeeeecccccchhhHHHHHHHHHHHHHHHhhhhHHHHHHhhccCCCCccccccch
Q psy5192 30 SIIILLSVFYGTISVLAVVGNFLVIWIVATSRRMQNVTNCFIANLALADIVIGLFAIPFQFQAALLQRWNLPNFMCPFCP 109 (324)
Q Consensus 30 ~~~~~~~~~~~i~~~~gi~~N~~vl~~i~~~~~~~~~~~~~l~~La~~dll~~~~~~~~~~~~~~~~~~~~~~~~C~~~~ 109 (324)
...++++++...++++.++||++|++.+.-+|++++..|+|+++||+||++.|.+.+|+...+.+.+.|..|...|.+..
T Consensus 28 ~q~v~i~~v~~~lsLVTv~GNlLVmiSfKvnrqLqTVnNYfLfSLAcADliIG~~SMnl~t~Y~lmg~W~LG~~~CdlWL 107 (503)
T KOG4220|consen 28 WQVVFIVVVTGSLSLVTVVGNLLVMISFKVNRQLQTVNNYFLFSLACADLIIGAFSMNLYTTYTLMGYWPLGPLVCDLWL 107 (503)
T ss_pred eEEEeeehhhhHHHHHhhhccEEEEEEEEecceeeeecceeehHHHHhhhhhheeechHHHHHHHHcccccchHHHHHHH
Confidence 33455777888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhHhhccCCcCC--CccccceeehhHHHHHHHhhhhhheeeceeeeeeecCCCCccccc
Q psy5192 110 FVQCLTVTVSVLTLTAIAVDRHRAILNPLSARP--SKLRAKICIFGIWTLSSFLAAPMAIATGVTMEEEYTDPAGRIHLK 187 (324)
Q Consensus 110 ~~~~~~~~~s~~~~~~is~dRy~~i~~p~~~~~--~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (324)
.+.+....+|++.+..|++|||..|.+|++|+. +.+++...++++|++++++-.|.++.|...... .... .
T Consensus 108 alDYvaSNASVmNLLiISFDRYFsVTrPLtYrakRTtkrA~~MI~~AW~iSfiLWaPaIl~WqyivGk-rTv~------~ 180 (503)
T KOG4220|consen 108 ALDYVASNASVMNLLIISFDRYFSVTRPLTYRAKRTTKRAGLMIGAAWVLSFVLWAPAILFWQYIVGK-RTVP------D 180 (503)
T ss_pred HHHHHhhhhhhhhhheeeeecceeecccccccccccchHHHHHHHHHHHHHHHHHHHHHHhhHhheee-eecC------C
Confidence 999999999999999999999999999998875 889999999999999999999987766533322 1211 1
Q ss_pred ccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--------------------------------
Q psy5192 188 PFCTNIHLSDDTMILYRRVLAVVQYAIPLSVISFVYARMALRLWGSKA-------------------------------- 235 (324)
Q Consensus 188 ~~c~~~~~~~~~~~~~~~~~~~~~~~ip~~i~~~~~~~i~~~~~~~~~-------------------------------- 235 (324)
..|...+.+..... .-..+..|.+|+.+|.+.|.+|++..+++.+
T Consensus 181 ~eC~iQFlsnp~iT---fGTAiAAFYlPVtiM~~LY~rIyret~kR~k~~~~lq~s~~~~~~~~~~~~~~~~~~~~s~r~ 257 (503)
T KOG4220|consen 181 GECYIQFLSNPAIT---FGTAIAAFYLPVTIMTILYWRIYRETRKRQKELAKLQASLPSFSAIKLSPESPKGDSKSSGRS 257 (503)
T ss_pred CceEEEeecCceee---hhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccccCcccccccccCCCCC
Confidence 23776666644322 2456778889999999999999998871100
Q ss_pred --------------------------------------------------------------------------------
Q psy5192 236 -------------------------------------------------------------------------------- 235 (324)
Q Consensus 236 -------------------------------------------------------------------------------- 235 (324)
T Consensus 258 ~p~~~~~~~~~~~~~~~~~k~ps~~~~~~~~~s~~edsd~~~~~s~~~s~~~~~~se~~~~~~v~~~~~~~~~~~D~~~~ 337 (503)
T KOG4220|consen 258 SPSEEGKREPLTNGCISNSKAPSLTPTESWKPSEKEDSDESSSESLTSSPLERPGSELSEIEAVVAKMPANQRKVDEEGL 337 (503)
T ss_pred CCccccccccCCCCccccccCcccCCccCCCCccccccccccccccccCCccccccccccccceeccCCCCcCCCCcccc
Confidence
Q ss_pred ------------CC-------------------------CCCc-----------------c-----ccHHHHhhhhhHHH
Q psy5192 236 ------------PG-------------------------NAQD-----------------S-----RDATLMKNKKKVIK 256 (324)
Q Consensus 236 ------------~~-------------------------~~~~-----------------~-----~~~~~~~~~~~~~~ 256 (324)
+. .+.. + +.+...++|+|++|
T Consensus 338 ~~~i~i~~~~~~p~s~sc~p~~~~t~~~~~s~~ns~~gk~r~~~~~~~~~~~~kkf~~~~r~q~~k~k~~~~~rErKAAk 417 (503)
T KOG4220|consen 338 NTLIQIPTDQMLPKSDSCVPIFSATDTDKTTDTNSGAGKRRAGPVARKTGLDYKKFAKRARSQSRKKKKMSLVRERKAAK 417 (503)
T ss_pred ccccccccccCCCCCCcccccccccccccCCccCccccccccCccccccchhhhhhhhhhhhhhhhhcchhhHHHHHHHH
Confidence 00 0000 0 00001257889999
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHhhhccCccchhHHHHHHHHHHHhhhccccccceeeeecCcccccCC
Q psy5192 257 MLVIVVALFAICWLPLQTYNVLQGIFPSINSYHYINIVFFCCDWLAMSNSCYNPFIYGIYNDKERKKN 324 (324)
Q Consensus 257 ~~~~~~~~f~~~~~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~npiiy~~~~~~~R~~~ 324 (324)
++..+.+.|+++|+||.|+.++..+..++.+. .+..+..+|.++||-+||+.|+++|+.||+.|
T Consensus 418 TLsAILlAFIiTWtPYNImVlv~tFC~~CiP~----tlW~~gYwLCYINSTiNP~CYALCNatFrkTf 481 (503)
T KOG4220|consen 418 TLSAILLAFILTWTPYNIMVLVNTFCKNCIPE----TLWTFGYWLCYINSTINPLCYALCNATFRKTF 481 (503)
T ss_pred HHHHHHHHHHHHcccceeeeehHhhcccccch----hHhhhhhheeeecccccHHHHHHHhHHHHHHH
Confidence 99999999999999999999988887766543 34566778999999999999999999999854
No 8
>PF00001 7tm_1: 7 transmembrane receptor (rhodopsin family) Rhodopsin-like GPCR superfamily signature 5-hydroxytryptamine 7 receptor signature bradykinin receptor signature gastrin receptor signature melatonin receptor signature olfactory receptor signature; InterPro: IPR000276 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ].; GO: 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 2KI9_A 3QAK_A 2YDV_A 3VGA_A 3PWH_A 3RFM_A 3EML_A 3VG9_A 3REY_A 3UZA_A ....
Probab=100.00 E-value=6e-36 Score=244.39 Aligned_cols=254 Identities=31% Similarity=0.579 Sum_probs=212.0
Q ss_pred hhheeeeeeeecccccchhhHHHHHHHHHHHHHHHhhhhHHHHHHhhccCCCCccccccchhhhHHHHHHHHHHHHHHHH
Q psy5192 49 GNFLVIWIVATSRRMQNVTNCFIANLALADIVIGLFAIPFQFQAALLQRWNLPNFMCPFCPFVQCLTVTVSVLTLTAIAV 128 (324)
Q Consensus 49 ~N~~vl~~i~~~~~~~~~~~~~l~~La~~dll~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~~~~is~ 128 (324)
||+++++++.++|++|++.++++.+||++|++.++...|........++|..++..|++..++..++..++.++++++++
T Consensus 1 GN~lvi~~~~~~~~~~~~~~~~l~~Lav~Dll~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~~~~is~ 80 (257)
T PF00001_consen 1 GNILVILVILRSKRLRTPSNILLLNLAVADLLVGLFCIPFYIYSLLFDDWIFSSFLCRIFGFLFYFSSFSSIFSLVAISI 80 (257)
T ss_dssp HHHHHHHHHHHSGGG-SHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHSSCTSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhehhhhhhhccCCChhHHHHHHHHHHHHhhccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 89999999999999999999999999999999999888888877777788899999999999999999999999999999
Q ss_pred HHHhHhhccCCcCC--CccccceeehhHHHHHHHhhhhhheeeceeeeeeecCCCCcccccccccccCCCchhHHHHHHH
Q psy5192 129 DRHRAILNPLSARP--SKLRAKICIFGIWTLSSFLAAPMAIATGVTMEEEYTDPAGRIHLKPFCTNIHLSDDTMILYRRV 206 (324)
Q Consensus 129 dRy~~i~~p~~~~~--~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~ 206 (324)
|||+++++|.+|+. +++++...++.+|+.+++.++|+............. ...|........ ...+...
T Consensus 81 dRy~~i~~p~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~--------~~~C~~~~~~~~-~~~~~~~ 151 (257)
T PF00001_consen 81 DRYLAICHPLRYRRIRTRRRARIIIILIWIISFLISLPPLFFSWVYFVSDGS--------QSFCFIDFSSSS-SQIYFIY 151 (257)
T ss_dssp HHHHHHHSHHTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEESTCC--------CEEEEESCSSSH-HHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccc--------cccccccccccc-ccccccc
Confidence 99999999998876 667888999999999999999997764433322211 123766555444 5566667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCc-cccHHHHhhhhhHHHHHHHHHHHHHHhhhhHHHHHHHhhhccCc
Q psy5192 207 LAVVQYAIPLSVISFVYARMALRLWGSKAPGNAQD-SRDATLMKNKKKVIKMLVIVVALFAICWLPLQTYNVLQGIFPSI 285 (324)
Q Consensus 207 ~~~~~~~ip~~i~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~f~~~~~P~~i~~~~~~~~~~~ 285 (324)
...+.+++|++++.++|.++.+++++++++.+..+ ++.+++.++|+|.++++..+++.|++||+|+.+..++....+..
T Consensus 152 ~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~P~~i~~~~~~~~~~~ 231 (257)
T PF00001_consen 152 FFIVFFILPLIIILICYIRILRKLRRQRKRIKSQSSSSSRRRSRRERRAARTLLIIVLVFLLCWLPYFILSLLSVFSPSS 231 (257)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHHHHHHCTCCHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSTS
T ss_pred ccccccccceeeeeeecccccccccccccccccccccccccccccccccccccccccccccccCCceeHHHHHHHHcCcc
Confidence 78888899999999999999999998877655433 34555667899999999999999999999999998887776554
Q ss_pred cchhHHHHHHHHHHHhhhccccccceee
Q psy5192 286 NSYHYINIVFFCCDWLAMSNSCYNPFIY 313 (324)
Q Consensus 286 ~~~~~~~~~~~~~~~l~~~~~~~npiiy 313 (324)
+. .......+..++..+|+++||++|
T Consensus 232 ~~--~~~~~~~~~~~l~~~~s~~nP~iY 257 (257)
T PF00001_consen 232 SL--ISSILFYISYFLAFLNSCLNPIIY 257 (257)
T ss_dssp TC--SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ch--hhHHHHHHHHHHHHHHHhhCcEEC
Confidence 22 455677888899999999999998
No 9
>KOG2087|consensus
Probab=99.93 E-value=3.6e-27 Score=188.58 Aligned_cols=266 Identities=22% Similarity=0.325 Sum_probs=204.6
Q ss_pred HHHHHHHHHHHHHHhhhhheeeeeeeecccccchhhHHHHHHHHHHHHHHHhhhhHHHHHHhh-------ccCCCCcccc
Q psy5192 33 ILLSVFYGTISVLAVVGNFLVIWIVATSRRMQNVTNCFIANLALADIVIGLFAIPFQFQAALL-------QRWNLPNFMC 105 (324)
Q Consensus 33 ~~~~~~~~i~~~~gi~~N~~vl~~i~~~~~~~~~~~~~l~~La~~dll~~~~~~~~~~~~~~~-------~~~~~~~~~C 105 (324)
.++.+..++++.++++||.+++......+...+....++.|||.+|+++++........+... ..|......|
T Consensus 25 ~~lRi~vW~i~~lAi~gN~~Vl~~~~~~~~~~~~~~~li~~la~ad~~mGiYl~~ia~vD~~~~gey~~~ai~W~tg~gC 104 (363)
T KOG2087|consen 25 WILRISVWVIALLAIVGNLLVLLTRFTSRYELNSHRFLICNLAFADLLMGIYLGLIASVDAKTRGEYYKHAIDWQTGLGC 104 (363)
T ss_pred ceeeehhhhhhhHHhccCeeeeeeeeehhhhccchHHHHHHHHHHHHHcchHHHHHHHhhHHHHHHHHHHHHhhhhcCCC
Confidence 345667888999999999999999888887778999999999999999999777766665443 1233556889
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHHHHhHhhccCCcCC--CccccceeehhHHHHHHHhhhhhheeeceeeeeeecCCCCc
Q psy5192 106 PFCPFVQCLTVTVSVLTLTAIAVDRHRAILNPLSARP--SKLRAKICIFGIWTLSSFLAAPMAIATGVTMEEEYTDPAGR 183 (324)
Q Consensus 106 ~~~~~~~~~~~~~s~~~~~~is~dRy~~i~~p~~~~~--~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (324)
++.+|+..+....|++.++.+++||++.|++|+|-.+ ..+....+.+..|+.+++.++.++++...+...
T Consensus 105 ~~aGflavFASElSv~~LT~itlEr~l~i~~p~~~~~~~~lr~~~~ill~~wl~~~l~A~~Pl~g~s~Y~~~-------- 176 (363)
T KOG2087|consen 105 PVAGFLAVFASELSVFLLTLITLERWLSITYPFRLDRKAKLRPLVLILLLGWLFAFLMALLPLFGISSYGAS-------- 176 (363)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhheeccccCCCcccccHHHHHHHHHHHHHHHHHhccccCCCCCccc--------
Confidence 9999999999999999999999999999999998655 444478888899999999999888774433222
Q ss_pred ccccccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccccHHHHhhhhhHHHHHHHHHH
Q psy5192 184 IHLKPFCTNIHLSDDTMILYRRVLAVVQYAIPLSVISFVYARMALRLWGSKAPGNAQDSRDATLMKNKKKVIKMLVIVVA 263 (324)
Q Consensus 184 ~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~ip~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (324)
+.|.+...++....-|.....+....+.++++.++|.+++..+++...+.... ..+.+|.++.++.
T Consensus 177 ----~vClPL~~~~~~s~g~y~~~~l~~N~lafiiia~~Y~~iy~~l~~~~~~~~~~----------~~~~akr~a~Lvf 242 (363)
T KOG2087|consen 177 ----SVCLPLHIEEPLSTGYYLVALLGLNLLAFIIIAFSYGKIYCSLRKGDLSATLI----------STSVAKRMAFLVF 242 (363)
T ss_pred ----ceeeecccCCccchhHHHHHHHHHHHHHHHHHHHHhhhhheeeecCCCccccc----------hhhhhhCeeEEEE
Confidence 34765444444333366677788889999999999999999998776543211 1466677788888
Q ss_pred HHHHhhhhHHHHHHHhhhccCccchhHHHHHHHHHHHhhhccccccceeeeecCcccccC
Q psy5192 264 LFAICWLPLQTYNVLQGIFPSINSYHYINIVFFCCDWLAMSNSCYNPFIYGIYNDKERKK 323 (324)
Q Consensus 264 ~f~~~~~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~npiiy~~~~~~~R~~ 323 (324)
.-.+||.|.....+......+..+.....+. ..+..-+|+++||++|.+.++.||+.
T Consensus 243 Td~icw~Pi~f~~~~al~~~~li~~~~sk~l---lv~flPlns~~NP~LYa~fT~~fk~d 299 (363)
T KOG2087|consen 243 TDCICWCPIAFFKFSALIGVELISVSYSKWL---LVFFLPLNSCLNPFLYAFFTPVFKED 299 (363)
T ss_pred ccccccCchheeeeHHhcCCcccChhhceeE---EEEEEEcccccCchhHHHcCHHHHHH
Confidence 9999999988877776665444333322221 12355589999999999999999985
No 10
>PF10320 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemoreceptor Srsx; InterPro: IPR019424 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class sx (Srsx), which is a solo family amongst the superfamilies of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].
Probab=99.92 E-value=6.5e-25 Score=177.32 Aligned_cols=252 Identities=19% Similarity=0.239 Sum_probs=170.9
Q ss_pred HHHhhhhheeeeeeeecccccchhhHHHHHHHHHHHHHHHhhhhHHHHHHhhccCCCCccccccchhhhHHHHHHHHHHH
Q psy5192 44 VLAVVGNFLVIWIVATSRRMQNVTNCFIANLALADIVIGLFAIPFQFQAALLQRWNLPNFMCPFCPFVQCLTVTVSVLTL 123 (324)
Q Consensus 44 ~~gi~~N~~vl~~i~~~~~~~~~~~~~l~~La~~dll~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~~ 123 (324)
++|++||..++..+.++|++|++.+++++.+|++|++.+...+|.... ..++...+...|-...+...++..++...+
T Consensus 2 ~ig~~gN~~~i~~~~~~~~Lrs~~~~li~~~~~~d~~~~~~~~~~~~~--~~~~~~i~~~~Cf~~~~~~~f~~~~qs~~~ 79 (257)
T PF10320_consen 2 IIGLFGNLLLIILIFRNKSLRSPCYILICILCFADLICLLGTLPFMLF--LFRDHQITRSECFWQIFFYIFFQCAQSVIM 79 (257)
T ss_pred EEEEEccHHHHHHHHhccccccchHHHHHHHHHHHHHHHhhHHHHHHH--HHhheeccHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999999999999999999998877776552 223445677899999999999999999999
Q ss_pred HHHHHHHHhHhhccCCcCCCccccceeehhHHHHHHHhhhhhheeeceeeeeeecCCCCcccccccccccCCCchhHHHH
Q psy5192 124 TAIAVDRHRAILNPLSARPSKLRAKICIFGIWTLSSFLAAPMAIATGVTMEEEYTDPAGRIHLKPFCTNIHLSDDTMILY 203 (324)
Q Consensus 124 ~~is~dRy~~i~~p~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~ 203 (324)
.+|++||++||+.|.+|+...+.......... +++.+...........+++ ....|.+...-+......
T Consensus 80 l~i~iDr~iaV~~P~~Y~~~~~~~y~~~~~~~--~~~~s~~~~~~~~~~~~~~---------~~~~C~pp~a~~~~~~~~ 148 (257)
T PF10320_consen 80 LAIAIDRLIAVCFPLRYRTISTRKYLIILLIF--PVIYSIFFTVIGFLYRDDE---------TIVICNPPLAFHGTASQI 148 (257)
T ss_pred HHHHhhheeeEeehhhhhhcccccchhhHhHH--HHHHHHHHHhheeEecCCc---------ccccCCCccccCccHHHH
Confidence 99999999999999999983333333332222 2222222221111111111 123476644433332222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccccHHHHhhhhhHHHHHHHHHHHHHHhhhhHHHHHHHhhhcc
Q psy5192 204 RRVLAVVQYAIPLSVISFVYARMALRLWGSKAPGNAQDSRDATLMKNKKKVIKMLVIVVALFAICWLPLQTYNVLQGIFP 283 (324)
Q Consensus 204 ~~~~~~~~~~ip~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~P~~i~~~~~~~~~ 283 (324)
......+. .+++++.|.......++++++ +.++++|..|.+...++.++.+|.-..+...+.....
T Consensus 149 ~~~~~~~i----nv~tvivY~i~~~~~~~k~~~----------~~~~~~kv~ksL~v~v~i~i~~w~~s~~~~~v~~~~~ 214 (257)
T PF10320_consen 149 WSYSNIII----NVITVIVYIITIIIFKRKSRS----------NSSRSKKVFKSLKVTVIIFIFSWFLSQIINTVSLALG 214 (257)
T ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHHHccc----------cchhHHHHHHHhhhheeeeeHHHHHHHHHHHHHHHhC
Confidence 22222222 233445555555555555443 1244788889999999999999998777665544333
Q ss_pred CccchhHHHHHHHHHHHhhhccccccceeeeecCcccccCC
Q psy5192 284 SINSYHYINIVFFCCDWLAMSNSCYNPFIYGIYNDKERKKN 324 (324)
Q Consensus 284 ~~~~~~~~~~~~~~~~~l~~~~~~~npiiy~~~~~~~R~~~ 324 (324)
. +.+....+..-..++..++.+.|.++|.++|+|||+++
T Consensus 215 ~--~~~~~~~i~~~~~i~v~~~~s~~ffV~~~~S~EYR~af 253 (257)
T PF10320_consen 215 L--DGETIAIIQMYAGIFVNISYSQNFFVYYWRSSEYRKAF 253 (257)
T ss_pred C--cHHHHHHHHHHHHHHHHHHHHHHheEEEEcCHHHHHHH
Confidence 2 23333445556678888999999999999999999974
No 11
>PF10324 7TM_GPCR_Srw: Serpentine type 7TM GPCR chemoreceptor Srw; InterPro: IPR019427 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class w (Srw), which is a solo family amongst the superfamilies of chemoreceptors. The genes encoding Srw do not appear to be under as strong an adaptive evolutionary pressure as those of Srz [].
Probab=99.89 E-value=9.4e-22 Score=165.32 Aligned_cols=273 Identities=16% Similarity=0.206 Sum_probs=197.3
Q ss_pred HHHHHHhhhhheeeeeeeeccccc-chhhHHHHHHHHHHHHHHHhhhhHHHHHHhhc---cCCCC--c----cccccchh
Q psy5192 41 TISVLAVVGNFLVIWIVATSRRMQ-NVTNCFIANLALADIVIGLFAIPFQFQAALLQ---RWNLP--N----FMCPFCPF 110 (324)
Q Consensus 41 i~~~~gi~~N~~vl~~i~~~~~~~-~~~~~~l~~La~~dll~~~~~~~~~~~~~~~~---~~~~~--~----~~C~~~~~ 110 (324)
+++++|+++|.+.+.++.| |.+| ++.|.++.++|++|++..+...+......... +...+ . ....+...
T Consensus 5 ~~~~~g~~~N~~h~~VLtr-k~mR~~~in~~l~~Iai~Dl~~~~~~~~~~~~~~~~~~~~~~C~~~~sy~~~~~~~~~~~ 83 (318)
T PF10324_consen 5 ILSIFGLFINIFHLIVLTR-KSMRSSSINILLIGIAICDLLYMLSILIWELFFFIIFYEDDECIPPYSYFWAYFKLIMES 83 (318)
T ss_pred EEeHHHHHHHHHHhhhcCC-hhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCcccHHHHHHHHHHHH
Confidence 3568999999999987765 4556 58899999999999999887777766544432 11111 1 12234466
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhHhhccCCcCC----CccccceeehhHHHHHHHhhhhhheeeceeeeeeecCCCCcccc
Q psy5192 111 VQCLTVTVSVLTLTAIAVDRHRAILNPLSARP----SKLRAKICIFGIWTLSSFLAAPMAIATGVTMEEEYTDPAGRIHL 186 (324)
Q Consensus 111 ~~~~~~~~s~~~~~~is~dRy~~i~~p~~~~~----~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (324)
+...+..+|.|..+.||+.|++++.+|.+.+. +++.+..++.++++.+.....+..........++....
T Consensus 84 l~~~~~~~S~WL~V~mA~iR~l~i~~p~~~~~~~l~~~k~~~~~i~~v~~~s~~~~~~~~~~~~i~~~~~~~~p------ 157 (318)
T PF10324_consen 84 LSDIFRRISIWLGVLMALIRYLSIKFPMSSRFQKLSKPKFAIIVILIVFIISFLFSIPYFFRYKIVEVSDPWVP------ 157 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCeeeeehHHHHHHHHHHHHHhhceEEEEeccccccC------
Confidence 77788889999999999999999999986542 67777788888888888888888766554432211000
Q ss_pred cccccccC---C---------------CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccccHHHH
Q psy5192 187 KPFCTNIH---L---------------SDDTMILYRRVLAVVQYAIPLSVISFVYARMALRLWGSKAPGNAQDSRDATLM 248 (324)
Q Consensus 187 ~~~c~~~~---~---------------~~~~~~~~~~~~~~~~~~ip~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 248 (324)
.+.|.... . +......+.....++.-++|.++..+..+.+++.+|+.+++++...+++ .
T Consensus 158 ~~~C~~~~~~~~~~~Y~~~~~~~~~~~~~~~~~~~~~~~gi~~kiiP~il~~ilti~Li~~Lrk~~~~r~~~~~~~---~ 234 (318)
T PF10324_consen 158 PPNCSGFPENYTFPRYMLNISELFTENDCLFFRIYFFIDGIFFKIIPCILLPILTILLIIELRKAKKRRKKLSSSK---S 234 (318)
T ss_pred CCceeeccccccccccchhhhhhhhhhHHHHHHHHHHhhhhHhhhhhHHHHHHHHHHHHHHHHhccHhhhcccccc---c
Confidence 11233100 0 0011223444445556789999999999999999998887766555322 4
Q ss_pred hhhhhHHHHHHHHHHHHHHhhhhHHHHHHHhhhccCc-cchhHHHHHHHHHHHhhhccccccceeeeecCcccccC
Q psy5192 249 KNKKKVIKMLVIVVALFAICWLPLQTYNVLQGIFPSI-NSYHYINIVFFCCDWLAMSNSCYNPFIYGIYNDKERKK 323 (324)
Q Consensus 249 ~~~~~~~~~~~~~~~~f~~~~~P~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~npiiy~~~~~~~R~~ 323 (324)
+++.+.++++..+++.|+++.+|..+..++.....+. +..........+...+..+|+..|++||..+|.+||++
T Consensus 235 ~~~~~tt~li~~~ti~f~i~e~p~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~h~~ic~~mSsqYR~t 310 (318)
T PF10324_consen 235 KKSDRTTKLILFMTISFLISELPQGIIFLLESFFEEDSGLIFIIIQLSIIFNILITINSSIHFFICCFMSSQYRKT 310 (318)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhhHHHhhhhhhHHHHHH
Confidence 5688999999999999999999999999887763322 23444556667888899999999999999999999985
No 12
>PF10328 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemoreceptor Srx; InterPro: IPR019430 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class x (Srx) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.
Probab=99.86 E-value=7.4e-21 Score=156.03 Aligned_cols=263 Identities=19% Similarity=0.216 Sum_probs=182.6
Q ss_pred HHHHHhhhhheeeeeeeecccccchhhHHHHHHHHHHHHHHHhhhhHHHHHHhhccCCCCcc-ccccchhhhHHHHHHHH
Q psy5192 42 ISVLAVVGNFLVIWIVATSRRMQNVTNCFIANLALADIVIGLFAIPFQFQAALLQRWNLPNF-MCPFCPFVQCLTVTVSV 120 (324)
Q Consensus 42 ~~~~gi~~N~~vl~~i~~~~~~~~~~~~~l~~La~~dll~~~~~~~~~~~~~~~~~~~~~~~-~C~~~~~~~~~~~~~s~ 120 (324)
++++|++.|.+++..+.+.+++|++.+++..+.|++|.+.++..+.+.......+.....+. .-.+.+.....+...+.
T Consensus 3 ~s~~G~~~N~~v~~~~~~~~~~~~sF~~l~~~~a~~n~i~~~~~l~~~~P~~~~~~~~~~~~~~s~~~g~~~~~~y~~~~ 82 (274)
T PF10328_consen 3 ISIIGIILNWLVFIIIFKLKSLRNSFGILCASQAIANIIICLIFLFWVVPMTLLDISFLPSSLNSIIFGFIGMFCYFIGP 82 (274)
T ss_pred eeHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCchHHHHHHHHHHHHHHHHHHH
Confidence 56899999999999999999999999999999999999998866665555554443333332 23445888889999999
Q ss_pred HHHHHHHHHHHhHhhccCCcCC--CccccceeehhHHHHHHHhhhhhheeeceeeeeeecCCCCcccccccccccCCCch
Q psy5192 121 LTLTAIAVDRHRAILNPLSARP--SKLRAKICIFGIWTLSSFLAAPMAIATGVTMEEEYTDPAGRIHLKPFCTNIHLSDD 198 (324)
Q Consensus 121 ~~~~~is~dRy~~i~~p~~~~~--~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~ 198 (324)
+.-.+||++|+.|+..|.+|++ +.+.+..+++++|++++....+.....+.....+.+.........+.|....
T Consensus 83 ~~~~liaiNRf~ai~fP~~y~~~fs~~~T~~~i~~~~~~~~~~~~~~~~~~~C~~~y~~~~~~~~~~~~~~C~~~~---- 158 (274)
T PF10328_consen 83 LSHLLIAINRFCAIFFPFKYKKIFSFKNTIILIAFIWLLSIIISTILYFPDGCYFYYDPETWSWSYPTDPPCGNYS---- 158 (274)
T ss_pred HHHHHHHHHHHheeeeHHHHHhHcCccceehhhhHHHHHHHHHHHHhhhcCCCcceeccceeeeecCCCCccchhh----
Confidence 9999999999999999998876 8888999999999999977766655444433333222221111122343311
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccccHHHHhhhhhHHHHHHHHHHHHHHhhhhHHHHHHH
Q psy5192 199 TMILYRRVLAVVQYAIPLSVISFVYARMALRLWGSKAPGNAQDSRDATLMKNKKKVIKMLVIVVALFAICWLPLQTYNVL 278 (324)
Q Consensus 199 ~~~~~~~~~~~~~~~ip~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~P~~i~~~~ 278 (324)
.........+-.++...++..+..++++.+++....+.+.++++++|.+..+.....-..+.+.++-+....-+
T Consensus 159 ------~~~~~~~~~~~~~~~~~lni~t~ikl~~~~~~~~~~~~~s~~r~rke~~f~~Qs~~Q~~~~~i~~~~~~~~~~~ 232 (274)
T PF10328_consen 159 ------WYFDFYKNFILVIISNILNIITFIKLRKFRKKISVSSSESKKRRRKEIRFFIQSFIQDLLYLIDLIFYFFIPPL 232 (274)
T ss_pred ------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 11112222333445555666666666655555444555666777889999999999999999988887665333
Q ss_pred hhhccCccchhHHHHHHHHHHHhhhccccccceeeeecCcccccC
Q psy5192 279 QGIFPSINSYHYINIVFFCCDWLAMSNSCYNPFIYGIYNDKERKK 323 (324)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~npiiy~~~~~~~R~~ 323 (324)
. + + .......+.....+.+++|++|+...|+|+|++
T Consensus 233 ~---~---~---~~~~F~~~t~~w~~~h~~DG~i~l~fN~~~r~~ 268 (274)
T PF10328_consen 233 S---S---N---RWWQFFCTTFSWVLVHALDGLIMLIFNSEIRRK 268 (274)
T ss_pred c---c---c---cHHHHHHHHHHHHHHHHhcceeEeEEcHHHHHH
Confidence 1 1 1 122334444446677889999999999999975
No 13
>PF05296 TAS2R: Mammalian taste receptor protein (TAS2R); InterPro: IPR007960 This family consists of several forms of mammalian taste receptor proteins (TAS2Rs). TAS2Rs are G protein-coupled receptors expressed in subsets of taste receptor cells of the tongue and palate epithelia and are organised in the genome in clusters. The proteins are genetically linked to loci that influence bitter perception in mice and humans [].; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0050909 sensory perception of taste, 0016021 integral to membrane
Probab=99.72 E-value=1.5e-16 Score=131.30 Aligned_cols=282 Identities=14% Similarity=0.173 Sum_probs=186.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhheeeeeeee---cccccchhhHHHHHHHHHHHHHHHhhhhHHHHHHhhccCCCCccccc
Q psy5192 30 SIIILLSVFYGTISVLAVVGNFLVIWIVAT---SRRMQNVTNCFIANLALADIVIGLFAIPFQFQAALLQRWNLPNFMCP 106 (324)
Q Consensus 30 ~~~~~~~~~~~i~~~~gi~~N~~vl~~i~~---~~~~~~~~~~~l~~La~~dll~~~~~~~~~~~~~~~~~~~~~~~~C~ 106 (324)
..+.+..++..+..++|++||++++.+-.+ +++.-++.+..+.+||+++++...+.........+..+....+..++
T Consensus 4 ~~~~i~~~i~~~~~~~Gi~~N~FI~~vn~~~w~k~~~l~~~d~IL~~La~sr~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (303)
T PF05296_consen 4 SLEIIFLIILVVEFIIGILGNGFIVLVNCSDWVKSRKLSPSDQILTSLAISRILLQWVILLNSFLSFFFPNIYFSENVYK 83 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchhhhhhhHHH
Confidence 445566788899999999999999988654 33334799999999999999987766655555555555555667888
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHhHhhccCCcC-----C-CccccceeehhHHHHHHHhhhhhheeeceeeeeeecCC
Q psy5192 107 FCPFVQCLTVTVSVLTLTAIAVDRHRAILNPLSAR-----P-SKLRAKICIFGIWTLSSFLAAPMAIATGVTMEEEYTDP 180 (324)
Q Consensus 107 ~~~~~~~~~~~~s~~~~~~is~dRy~~i~~p~~~~-----~-~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (324)
...+...+....|.|..+++++--++.|....+.- + -.+.....+.+.++.+++...+...........+..+.
T Consensus 84 ~~~~~~~f~~~~s~W~tt~LsvfYcvKI~~fs~~~Fl~LK~rI~~~v~~lLl~s~l~s~~~~~~~~~~~~~~~~~~~~~~ 163 (303)
T PF05296_consen 84 IIDFLWMFSNSSSLWFTTWLSVFYCVKIANFSHPFFLWLKRRISKVVPWLLLGSLLISFLNLLSIPLFIDNHINNNNTNN 163 (303)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHheeeecCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeeeeccccccC
Confidence 89999999999999999999999999997654321 1 22223344566777777333333333322211110111
Q ss_pred CCcccccccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCc-cccHHHHhhhhhHHHHHH
Q psy5192 181 AGRIHLKPFCTNIHLSDDTMILYRRVLAVVQYAIPLSVISFVYARMALRLWGSKAPGNAQD-SRDATLMKNKKKVIKMLV 259 (324)
Q Consensus 181 ~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~ip~~i~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 259 (324)
.+ .+......++....+..........+|++++..+...+...++||.++.+... +.++.+.+++.|+.|++.
T Consensus 164 ~~------N~t~~~~~~~~~~~~~~~~~~~~~~lPf~i~l~s~~lli~SL~rH~r~M~~n~~g~~~ps~~aH~~a~k~~~ 237 (303)
T PF05296_consen 164 SR------NSTSNFQESKSSYFYFFILFNLGSFLPFLIFLVSSILLIFSLWRHMRRMQKNATGFRDPSTEAHIRAIKTMI 237 (303)
T ss_pred CC------cceEEeecchHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCcHHHHHHHHHHH
Confidence 00 01111222333344444445588899999999999999888888766554332 334455677899999999
Q ss_pred HHHHHHHHhhhhHHHHHHHhhhccCccchhHHHHHHHHHHHhhhccccccceeeeecCcccccCC
Q psy5192 260 IVVALFAICWLPLQTYNVLQGIFPSINSYHYINIVFFCCDWLAMSNSCYNPFIYGIYNDKERKKN 324 (324)
Q Consensus 260 ~~~~~f~~~~~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~npiiy~~~~~~~R~~~ 324 (324)
...+.|...++-..+... ....++ . .....+...+..+++..+|++-.+.|+++|+++
T Consensus 238 sfl~ly~~~~~~~~~~~~-~~~~~~---~---~~~~~~~~~i~~~yps~hs~iLIlgn~KLr~~~ 295 (303)
T PF05296_consen 238 SFLILYIIYFLSLILSFL-SFFFPE---N---SIWFWVCEIIIALYPSGHSIILILGNPKLRQAL 295 (303)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHhcc---c---cHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHH
Confidence 888888776655443211 111111 1 123345556888999999999999999999874
No 14
>PF10323 7TM_GPCR_Srv: Serpentine type 7TM GPCR chemoreceptor Srv; InterPro: IPR019426 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class v (Srv) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.
Probab=99.71 E-value=7.1e-17 Score=132.29 Aligned_cols=260 Identities=13% Similarity=0.158 Sum_probs=164.8
Q ss_pred HHhhhhheeeeeeeeccc----ccchhhHHHHHHHHHHHHHHHhhhhHHHHHHhh--cc--CCCCccccccchhhhHHHH
Q psy5192 45 LAVVGNFLVIWIVATSRR----MQNVTNCFIANLALADIVIGLFAIPFQFQAALL--QR--WNLPNFMCPFCPFVQCLTV 116 (324)
Q Consensus 45 ~gi~~N~~vl~~i~~~~~----~~~~~~~~l~~La~~dll~~~~~~~~~~~~~~~--~~--~~~~~~~C~~~~~~~~~~~ 116 (324)
+.++....++..+.+.|+ .+++.+-++.+.+++|++..+............ .+ ...++..-++.........
T Consensus 7 ~tlply~~il~~l~~~r~~~~~~~~~Fy~l~~~~~iaDi~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~y~~~ 86 (283)
T PF10323_consen 7 VTLPLYIFILYCLLKLRKRSKTFKSTFYTLLIQHCIADILSMLFYFLLQRFRAYGFFNDFYFSYQTYYAAIYYNIAYYFL 86 (283)
T ss_pred ehHHHHHHHHHHHHHcccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 344555555555555433 468999999999999999877555443333221 11 1122223455555666777
Q ss_pred HHHHHHHHHHHHHHHhHhhccC-CcCC--CccccceeehhHHHHHHHhhhhhheeeceeeeeeecCCCCccccccccccc
Q psy5192 117 TVSVLTLTAIAVDRHRAILNPL-SARP--SKLRAKICIFGIWTLSSFLAAPMAIATGVTMEEEYTDPAGRIHLKPFCTNI 193 (324)
Q Consensus 117 ~~s~~~~~~is~dRy~~i~~p~-~~~~--~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~ 193 (324)
.......+.+|++||.||++|. ++.+ ++.+.+.+.++-|+.+.+.++|.+...+........ ..
T Consensus 87 ~~~~~gi~lls~nR~~ai~~P~~~~~~~~~~~~~~~i~~i~wi~p~li~~~~~~~~~~~f~~~~~-------------~~ 153 (283)
T PF10323_consen 87 YIQCIGIVLLSLNRYLAICFPTSRHTKFWQPAKIWIIILIQWIPPLLISLPFFFDTDFYFDNEEN-------------MS 153 (283)
T ss_pred HHHHHhHHHHHHhhhheEEeecHHHhhhccccchhheeeeeehhhhhheeeeeccCceeeecccc-------------ee
Confidence 7888899999999999999999 5544 777888889999999999999865544332222111 11
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccccHHHHhhhhhHHHHHHHHHHHHHHhhhhHH
Q psy5192 194 HLSDDTMILYRRVLAVVQYAIPLSVISFVYARMALRLWGSKAPGNAQDSRDATLMKNKKKVIKMLVIVVALFAICWLPLQ 273 (324)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~ip~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~P~~ 273 (324)
...+................+.++..+++|..+...+||+++ ..+++.++++++|.|.+.+..+....+++...=+
T Consensus 154 ~~~d~~~~~~~~~~~~~~~~~~cv~~iv~Y~~i~~~iRk~~k---~~s~~~s~~~~rE~~L~~~~~i~~~a~~~~~~~~- 229 (283)
T PF10323_consen 154 LFVDPEFIQRNFLIAFIFVSVTCVICIVCYGIIFIFIRKRNK---KKSKSSSRSRRREIRLAIQVFILFCAFFVILVYY- 229 (283)
T ss_pred eecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---hhhHhhhhhhhHhHHHHHHHHHHHHHHHHHHHHH-
Confidence 112222222333444555667888899999999999998774 2333444556778888888877666654433332
Q ss_pred HHHHHhhhccCccchhHHHHHHHHHHHhhhccccccceeeeecCcccccCC
Q psy5192 274 TYNVLQGIFPSINSYHYINIVFFCCDWLAMSNSCYNPFIYGIYNDKERKKN 324 (324)
Q Consensus 274 i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~npiiy~~~~~~~R~~~ 324 (324)
+.........+ .+.....+..-..+..+.|.+||+.-...|+++||++
T Consensus 230 ~~~~~~~~~~~---~~~~~~~r~~y~~~~~~~s~inP~~LLi~n~~lr~~~ 277 (283)
T PF10323_consen 230 IFSNYFAQNFN---TDPIFYLRAFYPILNGLLSFINPWMLLIFNKDLRKQV 277 (283)
T ss_pred HHHHHHHhccc---chHHHHHHHHHHHHHHHHHhhhhHHhhhccHHHHHHH
Confidence 22222222221 1212223334445777899999999999999999863
No 15
>PF05462 Dicty_CAR: Slime mold cyclic AMP receptor
Probab=99.61 E-value=3.1e-14 Score=116.22 Aligned_cols=250 Identities=18% Similarity=0.208 Sum_probs=158.7
Q ss_pred HHHHHHHHHHHHhhhhheeeeeeeecccccchhhHHHHHHHHHHHHHHHhhhhHHHHHHhhccCCCCccccccchhhhHH
Q psy5192 35 LSVFYGTISVLAVVGNFLVIWIVATSRRMQNVTNCFIANLALADIVIGLFAIPFQFQAALLQRWNLPNFMCPFCPFVQCL 114 (324)
Q Consensus 35 ~~~~~~i~~~~gi~~N~~vl~~i~~~~~~~~~~~~~l~~La~~dll~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~ 114 (324)
+.++..+.++++++|-++++..+.+.|++|++.+.++.-++++|++..+..... ...++...++..|++++++..+
T Consensus 9 ~~~i~~~~s~lSllGclfiI~tf~~~k~~r~~~~rli~yl~~~~ll~~v~~~~~----~~~~~~~~~s~lC~~Qafliq~ 84 (303)
T PF05462_consen 9 LYAIELVASVLSLLGCLFIIITFCLFKRLRKPINRLIFYLSIANLLTNVASMIM----TLSPSAGENSFLCQFQAFLIQF 84 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHH----HhcccCCCCCcchhhHhHHHHH
Confidence 556677779999999999999999999999999999999999999876543322 1223334557889999999999
Q ss_pred HHHHHHHHHHHHHHHHHhHhhccCCcCCCccccceeehhHHHHHHHhhhhhheeeceeeeeeecCCCCcccccccccccC
Q psy5192 115 TVTVSVLTLTAIAVDRHRAILNPLSARPSKLRAKICIFGIWTLSSFLAAPMAIATGVTMEEEYTDPAGRIHLKPFCTNIH 194 (324)
Q Consensus 115 ~~~~s~~~~~~is~dRy~~i~~p~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~ 194 (324)
+..++.+..++||++=|..++++.. ..++.-+.....+|.++++.+..++.... .+. . ...|....
T Consensus 85 f~~as~lWt~~iA~nly~~~~~~~~--~~~k~e~~Y~l~~wGiPli~a~i~l~~~~---~g~----~-----G~WCWI~~ 150 (303)
T PF05462_consen 85 FMLASFLWTLCIAFNLYLTFVKRYD--ELEKLEKYYHLVCWGIPLIPAVIPLIGND---YGP----A-----GNWCWIKP 150 (303)
T ss_pred hhHHHHHHHHHHHHHhhheeEEcCc--cHHHHHHHHHHHHHHHHHHHHHHHHHccC---CCC----C-----CCceeecC
Confidence 9999999999999999999876532 33444456778899999998776653221 111 1 12365433
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhcCCCCCCCCccccHHHHhhhhhHHHHHHHHHHHHHHhhh
Q psy5192 195 LSDDTMILYRRVLAVVQYAIPLSVI----SFVYARMALRLWGSKAPGNAQDSRDATLMKNKKKVIKMLVIVVALFAICWL 270 (324)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~ip~~i~----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~ 270 (324)
..+.. . + ..+.+|+.++ .+.+....+...+..+.. . ..++ +++.|....+..-.++|++||+
T Consensus 151 ~~~~~-r-~------~lfY~Pl~ii~~~~~ilv~i~~~~~y~~~~~~-~-sd~~----~~~~~~~~kL~~Yp~ifiicw~ 216 (303)
T PF05462_consen 151 EWDVW-R-F------ALFYIPLWIIIIISAILVGITMRYIYRVIRNG-V-SDNK----DKHLKYQLKLVNYPLIFIICWI 216 (303)
T ss_pred CCcch-H-H------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-c-chhH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 22211 1 1 1122222111 111111111111111111 1 1111 1122223335568888999999
Q ss_pred hHHHHHHHhhhccCccchhHHHHHHHHHHHhhhccccccceeeeecCccccc
Q psy5192 271 PLQTYNVLQGIFPSINSYHYINIVFFCCDWLAMSNSCYNPFIYGIYNDKERK 322 (324)
Q Consensus 271 P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~npiiy~~~~~~~R~ 322 (324)
|..+.++....... +. .+...-..++.+...+|.++|++.++-++|
T Consensus 217 fa~INRI~~~~~~~---~~---~l~~Lh~~~s~lqGf~nsivy~~n~~~~~~ 262 (303)
T PF05462_consen 217 FATINRIYNFIGKN---PF---WLSVLHVGFSPLQGFFNSIVYGYNNSLMWR 262 (303)
T ss_pred HHHHHHHHHHhcCC---ch---HHHHHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 99999998876421 11 233344457778999999999999987665
No 16
>PF10321 7TM_GPCR_Srt: Serpentine type 7TM GPCR chemoreceptor Srt; InterPro: IPR019425 Chemoreception is mediated in Caenorhabditis elegans by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs) of proteins which are of the serpentine type []. Srt is a member of the Srg superfamily of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].
Probab=99.56 E-value=1.4e-13 Score=113.15 Aligned_cols=263 Identities=13% Similarity=0.113 Sum_probs=165.8
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhheeeeeeeecccccchhhHHHHHHHHHHHHHHHhhhhHHHHHHhhccCCCCccccc--
Q psy5192 29 TSIIILLSVFYGTISVLAVVGNFLVIWIVATSRRMQNVTNCFIANLALADIVIGLFAIPFQFQAALLQRWNLPNFMCP-- 106 (324)
Q Consensus 29 ~~~~~~~~~~~~i~~~~gi~~N~~vl~~i~~~~~~~~~~~~~l~~La~~dll~~~~~~~~~~~~~~~~~~~~~~~~C~-- 106 (324)
...+...++.+.+.+++-.+.+..++.++.+++..|.+.+.++.-|++.|+................ |...|+
T Consensus 29 g~~~p~~G~~~~~~g~~~~~lY~p~~~~i~~~~~~k~~~ykiM~~L~i~Di~~l~~~si~tG~l~i~-----G~vfC~~P 103 (313)
T PF10321_consen 29 GVKRPILGIYFLIFGIIIIILYIPCLIAIFKKKLFKMSCYKIMFFLAIFDIIQLFINSIITGILAIF-----GAVFCSYP 103 (313)
T ss_pred CCcccchhHHHHHHHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHHhhhhhhhHHHhc-----CccccCCc
Confidence 3455668888888888889999999999988877789999999999999998855433322222222 233444
Q ss_pred ----cchhhhHHHHHHHHHHHHHHHHHHHhHhhccCCcCC--CccccceeehhHHHHHH--Hhhhhhheeeceeeeeeec
Q psy5192 107 ----FCPFVQCLTVTVSVLTLTAIAVDRHRAILNPLSARP--SKLRAKICIFGIWTLSS--FLAAPMAIATGVTMEEEYT 178 (324)
Q Consensus 107 ----~~~~~~~~~~~~s~~~~~~is~dRy~~i~~p~~~~~--~~~~~~~~~~~~w~~~~--~~~~~~~~~~~~~~~~~~~ 178 (324)
+.+.....+..++......+++||...+..|..... ..++....+.+..++++ .+-.++..+........++
T Consensus 104 ~~~~i~G~~~~~~W~~~c~~~i~LainR~~~l~~~~~~~~~F~g~~~~~~l~~~~iY~~y~~~fT~pv~Fns~~~sw~fD 183 (313)
T PF10321_consen 104 RFIYIMGCIALGSWCGSCIICILLAINRCCELNFPFKLKFLFEGKRTYIVLFLPIIYGFYFSFFTPPVLFNSEYMSWFFD 183 (313)
T ss_pred hHhhhhhccchhhHHHHHHHHHHHHHHHHHHHhcchhhHHhhcCceEEeeehhHHHHHHHHHHHcCcccCCCCcceEecC
Confidence 446666778888899999999999999998865443 44454444444333333 3223443333222221111
Q ss_pred CCCCcccccccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccccHHHHhhhhhHHHHH
Q psy5192 179 DPAGRIHLKPFCTNIHLSDDTMILYRRVLAVVQYAIPLSVISFVYARMALRLWGSKAPGNAQDSRDATLMKNKKKVIKML 258 (324)
Q Consensus 179 ~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~ip~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (324)
+. -. +.+....|.........++-.+.+..+|..+...++++.+.. .+++..|++++.....
T Consensus 184 P~---------i~----~g~~~~~Y~N~~~~~nN~~~~~~t~~lY~~l~~~l~~k~~~~-----~s~~~~k~~~qI~iQs 245 (313)
T PF10321_consen 184 PM---------IF----EGKSPELYSNIPHTFNNIIVVICTTFLYIYLCYYLIKKSKYS-----TSSQLSKAQRQIFIQS 245 (313)
T ss_pred cc---------cc----CCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-----cchhhhhhhHHHHHHH
Confidence 10 00 011111233334444455567777888888888887775544 2223335577777777
Q ss_pred HHHHHHHHHhhhhHHHHHHHhhhccCccchhHHHHHHHHHHHhhhccccccceeeeecCcccccCC
Q psy5192 259 VIVVALFAICWLPLQTYNVLQGIFPSINSYHYINIVFFCCDWLAMSNSCYNPFIYGIYNDKERKKN 324 (324)
Q Consensus 259 ~~~~~~f~~~~~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~npiiy~~~~~~~R~~~ 324 (324)
.++.+.+.+.++-+..... + . .+.+...+......+++..+|+||...||..|+++
T Consensus 246 ~iIC~f~~i~a~iyv~m~f---~-~------~p~~~i~~~~~~Wql~~g~~~iIYl~lNrtIR~~~ 301 (313)
T PF10321_consen 246 VIICFFHAIAAVIYVYMQF---F-P------PPPWLIIIGQISWQLSHGCPPIIYLTLNRTIRNSV 301 (313)
T ss_pred HHHHHHHHHHHHHHHeeee---e-c------ccHHHHHHHHHHHhccCCccceEEEEECHHHHHHH
Confidence 7777766665554433322 1 1 12345666778889999999999999999999863
No 17
>PF03402 V1R: Vomeronasal organ pheromone receptor family, V1R; InterPro: IPR004072 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ]. Pheromones have evolved in all animal phyla, to signal sex and dominance status, and are responsible for stereotypical social and sexual behaviour among members of the same species. In mammals, these chemical signals are believed to be detected primarily by the vomeronasal organ (VNO), a chemosensory organ located at the base of the nasal septum []. The VNO is present in most amphibia, reptiles and non-primate mammals but is absent in birds, adult catarrhine monkeys and apes []. An active role for the human VNO in the detection of pheromones is disputed; the VNO is clearly present in the foetus but appears to be atrophied or absent in adults. Three distinct families of putative pheromone receptors have been identified in the vomeronasal organ (V1Rs, V2Rs and V3Rs). All are G protein-coupled receptors but are only distantly related to the receptors of the main olfactory system, highlighting their different role []. The V1 receptors share between 50 and 90% sequence identity but have little similarity to other families of G protein-coupled receptors. They appear to be distantly related to the mammalian T2R bitter taste receptors and the rhodopsin-like GPCRs []. In rat, the family comprises 30-40 genes. These are expressed in the apical regions of the VNO, in neurons expressing Gi2. Coupling of the receptors to this protein mediates inositol trisphosphate signalling []. A number of human V1 receptor homologues have also been found. The majority of these human sequences are pseudogenes [] but an apparently functional receptor has been identified that is expressed in the human olfactory system [].; GO: 0016503 pheromone receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane
Probab=99.38 E-value=2.5e-12 Score=102.27 Aligned_cols=249 Identities=13% Similarity=0.127 Sum_probs=160.7
Q ss_pred cccchhhHHHHHHHHHHHHHHHhhhhHHHHHHhhccCCCCccccccchhhhHHHHHHHHHHHHHHHHHHHhHhhccCCcC
Q psy5192 62 RMQNVTNCFIANLALADIVIGLFAIPFQFQAALLQRWNLPNFMCPFCPFVQCLTVTVSVLTLTAIAVDRHRAILNPLSAR 141 (324)
Q Consensus 62 ~~~~~~~~~l~~La~~dll~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~~~~is~dRy~~i~~p~~~~ 141 (324)
+..+|.+..+.+||++|.+..+.-...........+ .+++..||+..++.......|+.+.+++++-+-+.|. |...+
T Consensus 6 ~r~kp~dlIl~hLa~aN~lvLl~rGip~~~~~~~~~-~~~d~gCK~v~Y~~RV~RglSictTCLLSvfQAItIS-P~~s~ 83 (265)
T PF03402_consen 6 HRLKPIDLILIHLALANILVLLSRGIPQTMAFFGWK-FFDDIGCKIVFYIYRVARGLSICTTCLLSVFQAITIS-PSNSR 83 (265)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcc-cCCCceeeeeeeehHHhchhhHHhhhHHHHHhhEEEe-cCCch
Confidence 346899999999999999886654443333333323 4688999999999999999999999999996666664 33211
Q ss_pred ------CCccccceeehhHHHHHHHhhhhhheeeceeeeeeecCCCCcccccccccccCCCchhHHHHHHHHHHHHHHHH
Q psy5192 142 ------PSKLRAKICIFGIWTLSSFLAAPMAIATGVTMEEEYTDPAGRIHLKPFCTNIHLSDDTMILYRRVLAVVQYAIP 215 (324)
Q Consensus 142 ------~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~ip 215 (324)
+.++.....+...|++-.+................ ..+.......|.....+......+.... .+--++.
T Consensus 84 w~~lK~k~pk~i~~~~~~~Wilnlli~~~~~~~~~~~~n~t---~~~~~~~~~yCs~~~~~~~~~~~~~~~~-~~~D~~f 159 (265)
T PF03402_consen 84 WAELKVKAPKYIGPSCLFCWILNLLININVLVYIIATPNST---NNNFTYSLGYCSSVPISYIVSSLFATLL-SFRDVLF 159 (265)
T ss_pred hhhhhhhcCCccccHHHHHHHHHHhhhcceeEEEEecCccc---cCceeecCCeEEEEecchhhhhhhhhHH-HhhHHHH
Confidence 13333444455678877766654333221111111 1111122345765443333333333222 3334556
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCcc-ccHHHHhhhhhHHHHHHHHHHHHHHhhhhHHHHHHHhhhccCccchhHHHHH
Q psy5192 216 LSVISFVYARMALRLWGSKAPGNAQDS-RDATLMKNKKKVIKMLVIVVALFAICWLPLQTYNVLQGIFPSINSYHYINIV 294 (324)
Q Consensus 216 ~~i~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~f~~~~~P~~i~~~~~~~~~~~~~~~~~~~~ 294 (324)
+.+|+.+...+...+.||+++.+...+ +...+...|.|+++++++++..|+..+....+...+.....+. . .+
T Consensus 160 vgLM~~aSgyMV~~L~RH~q~VqhIhs~~~s~r~SpE~RAtktILlLVs~FV~fY~l~si~~~~~~~~~~~-~-----~~ 233 (265)
T PF03402_consen 160 VGLMIWASGYMVFLLYRHHQQVQHIHSSSLSPRSSPETRATKTILLLVSTFVSFYGLSSILFIYLTSFKNS-P-----WL 233 (265)
T ss_pred HHHHHhhhhhheeeeeecccccccCcCCCCCCCCChhHHHhCeEeeHHHHHHHHHhHHHHHHHHHHHhcCC-c-----ce
Confidence 778888888888888888887665443 3334456799999999999999999998887765543332221 1 12
Q ss_pred HHHHHHhhhccccccceeeeecCccccc
Q psy5192 295 FFCCDWLAMSNSCYNPFIYGIYNDKERK 322 (324)
Q Consensus 295 ~~~~~~l~~~~~~~npiiy~~~~~~~R~ 322 (324)
..+..+++...+.+.|++....+++..|
T Consensus 234 ~~~~~~ls~cfptisPfvLI~~d~~i~~ 261 (265)
T PF03402_consen 234 LNISVFLSSCFPTISPFVLISSDKRIIK 261 (265)
T ss_pred eEHHHHHhHHhHhhChHHhhccCchHHH
Confidence 2345578889999999999999988765
No 18
>PF10326 7TM_GPCR_Str: Serpentine type 7TM GPCR chemoreceptor Str; InterPro: IPR019428 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class r (Str) from the Str superfamily [, ]. Almost a quarter (22.5%) of str and srj family genes and pseudogenes in C. elegans appear to have been newly formed by gene duplications since the species split [].
Probab=99.10 E-value=5.7e-11 Score=99.45 Aligned_cols=274 Identities=14% Similarity=0.065 Sum_probs=160.9
Q ss_pred HHHHHHHHhhhhheeeeeeeeccccc-chhhHHHHHHHHHHHHHHHhhhhHHHHHHhh----------ccCCCCcccccc
Q psy5192 39 YGTISVLAVVGNFLVIWIVATSRRMQ-NVTNCFIANLALADIVIGLFAIPFQFQAALL----------QRWNLPNFMCPF 107 (324)
Q Consensus 39 ~~i~~~~gi~~N~~vl~~i~~~~~~~-~~~~~~l~~La~~dll~~~~~~~~~~~~~~~----------~~~~~~~~~C~~ 107 (324)
.-+..+++++.|++.++.+.++.+.+ ....+++...|+.|+..+++-....-..... +.+..+....+.
T Consensus 5 ~~~~~~~s~~~N~~Li~Li~~~s~k~~G~Yk~Lm~~fs~~~i~fs~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (307)
T PF10326_consen 5 QYIGFVLSLFLNSLLIYLILTKSPKSLGSYKYLMIYFSIFEIIFSILDFLVQPIIHSYGSSFVVFSDSGPFFLSKSIGQI 84 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCCCEEEEEehhHHHHHHHHHHHHHHHhceeecCCeeEEEeecccccccchheee
Confidence 34567899999999998887654333 3344677788999988877443322111111 112234455667
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHhHhhccCCcCC-CccccceeehhHHHHHHHhhhhhheeeceeeeee----------
Q psy5192 108 CPFVQCLTVTVSVLTLTAIAVDRHRAILNPLSARP-SKLRAKICIFGIWTLSSFLAAPMAIATGVTMEEE---------- 176 (324)
Q Consensus 108 ~~~~~~~~~~~s~~~~~~is~dRy~~i~~p~~~~~-~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~---------- 176 (324)
.......+...+...++.--+.||.++++|.+-+. ..++........-+.++.+............+.+
T Consensus 85 l~~~y~~~f~~~~~llaihFiYRY~av~~~~~l~~f~~~~~~~w~~~~~~~~~~W~~~~~~~~~~~~~~~~~lr~~~~~~ 164 (307)
T PF10326_consen 85 LLAIYCGCFGMSFSLLAIHFIYRYWAVCRPKKLRYFSGWRFIIWFLIPIIFGIIWFLLVYFFFSPDEESDEYLREELLEN 164 (307)
T ss_pred hhhhhhhhHHHHHHHHHhHhhhheeeeccchhhccccccceeeeehhhhhhcccceEEEeehhccchhhhhhhccccccc
Confidence 77778888889999999999999999999986443 3334333333333344443333222221111100
Q ss_pred ecCCCCcccc-ccccc--ccCCC--chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccccHHHHhhh
Q psy5192 177 YTDPAGRIHL-KPFCT--NIHLS--DDTMILYRRVLAVVQYAIPLSVISFVYARMALRLWGSKAPGNAQDSRDATLMKNK 251 (324)
Q Consensus 177 ~~~~~~~~~~-~~~c~--~~~~~--~~~~~~~~~~~~~~~~~ip~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (324)
++...+.... ...-. +...+ -+...............++..++++|-.++.+++++.++.. +++.++-+
T Consensus 165 y~~~i~~~~y~~~~~y~~~~nG~~~~~~~~~~~~~~~~~im~~s~~iii~cg~~~~~~i~~~~~~~------S~~~~~lq 238 (307)
T PF10326_consen 165 YGLDIDEIPYVGFVYYPKDENGSKELNWPSFIGMLIMCIIMSISFFIIIYCGIKIYKKIKKLSSIM------SSKTRKLQ 238 (307)
T ss_pred cCCCccceeEEEEEEeeeccCCceeechhhheeeeecchhHHhHHHHHHHHHhhhHHHHhcccccc------ChhhHHHH
Confidence 0000000000 00000 00111 11222233334455567788999999999999995544332 23334557
Q ss_pred hhHHHHHHHHHHH-HHHhhhhHHHHHHHhhhccCccchhHHHHHHHHHHHhhhccccccceeeeecCcccccCC
Q psy5192 252 KKVIKMLVIVVAL-FAICWLPLQTYNVLQGIFPSINSYHYINIVFFCCDWLAMSNSCYNPFIYGIYNDKERKKN 324 (324)
Q Consensus 252 ~~~~~~~~~~~~~-f~~~~~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~npiiy~~~~~~~R~~~ 324 (324)
+|..+.+...+++ .++...|..+......+..+.+. ...+......+.|++||++-.+.-|+||++.
T Consensus 239 ~QLf~aLv~Qt~iP~i~~~~P~~~~~~~p~~~i~~~~------~~~~~~~~~~~yP~iDpl~~i~~ik~yR~~i 306 (307)
T PF10326_consen 239 KQLFKALVIQTIIPFIFMYIPVFIVFILPFFGIDLGF------FSNIISILISLYPAIDPLPVIFIIKDYRKAI 306 (307)
T ss_pred HHHHHHHHHHhhhhheeeecchhheeeeeccCCCCCc------cccHhhhhEEEEeehhhheeeEeeHHHHHhh
Confidence 8888888876666 77889998876655444322221 1223345777999999999999999999974
No 19
>PF10317 7TM_GPCR_Srd: Serpentine type 7TM GPCR chemoreceptor Srd; InterPro: IPR019421 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents the chemoreceptor Srd [].
Probab=99.09 E-value=1.7e-09 Score=89.58 Aligned_cols=272 Identities=15% Similarity=0.117 Sum_probs=159.2
Q ss_pred HHHHHHHHHHhhhhheeeeeeeecc-cccchhhHHHHHHHHHHHHHHHhhhhHHHHHHhhcc-----------CCCCccc
Q psy5192 37 VFYGTISVLAVVGNFLVIWIVATSR-RMQNVTNCFIANLALADIVIGLFAIPFQFQAALLQR-----------WNLPNFM 104 (324)
Q Consensus 37 ~~~~i~~~~gi~~N~~vl~~i~~~~-~~~~~~~~~l~~La~~dll~~~~~~~~~~~~~~~~~-----------~~~~~~~ 104 (324)
++..+.+.+|++.|.++++.+.++. +.-+...+++.|-|+.|++.++...... ......+ ...+...
T Consensus 3 i~~~~~~~~~~~~n~~Ll~~i~~~tp~~l~~~~~~l~~~~~~~~~~~~~~~~~q-~R~i~~~~~~~~~~~GpC~~~~~~~ 81 (292)
T PF10317_consen 3 IYHPIFFILGIILNILLLYLIIFKTPKSLRTYSILLLNTAIFDLISIISAFLTQ-PRIIPNGTSIAVISYGPCRYFGPWF 81 (292)
T ss_pred EeHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhccCCCCcEEEEeeecceecCcHH
Confidence 3567789999999999998887653 4346778999999999999866443322 1222211 1234556
Q ss_pred cccchhhhHHHHHHHHHHHHHHHHHHHhHhhccCCcCCCccccceeehhHHHHHHHhhhhhheeeceeeeeeec-CC-CC
Q psy5192 105 CPFCPFVQCLTVTVSVLTLTAIAVDRHRAILNPLSARPSKLRAKICIFGIWTLSSFLAAPMAIATGVTMEEEYT-DP-AG 182 (324)
Q Consensus 105 C~~~~~~~~~~~~~s~~~~~~is~dRy~~i~~p~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~-~~-~~ 182 (324)
|.....+...+...+.+.+..--..||..+.++.. ++++....+...+..++................+.. .. ..
T Consensus 82 C~~~y~~~~~~~~~s~~~i~~sf~yRy~iL~~~~~---~~~~~i~~~~l~~~p~~~~~i~~~~~~~~~~~~~~~~~~~~p 158 (292)
T PF10317_consen 82 CFFCYHIMLHFSIHSGWSIILSFYYRYYILRNPSP---SRKRIIFICILIYIPSFSMLIFFFFSPTDSEPVEAELNQFHP 158 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC---chhHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHhCc
Confidence 77767777788888899999999999999987753 455555666666666666655444322211110000 00 00
Q ss_pred cccccccccccCCCc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccccHHHHhhhhhHHHHHHH
Q psy5192 183 RIHLKPFCTNIHLSD--DTMILYRRVLAVVQYAIPLSVISFVYARMALRLWGSKAPGNAQDSRDATLMKNKKKVIKMLVI 260 (324)
Q Consensus 183 ~~~~~~~c~~~~~~~--~~~~~~~~~~~~~~~~ip~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (324)
....... ...+..+ .....+.............++..+.--++.+.++++..+ -+++.++.+++..|.+.+
T Consensus 159 ~y~~~~~-~i~G~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~R~ki~~~L~~~~~~------~S~~tk~~h~~lv~~Lt~ 231 (292)
T PF10317_consen 159 EYNLENY-SISGFSDISSPPSLINILIMTIPIFPIPIVIFFLRRKILKFLNKKSSS------MSERTKSMHRQLVKGLTI 231 (292)
T ss_pred ccccccc-eeeeecchhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhh------cCHHHHHHHHHHHHHHHH
Confidence 0000000 0101111 111222222222222222333444555666666653321 122333557788888888
Q ss_pred HHHHHHHhhhhHHHHHHHhhhccCccchhHHHHHHHHHHHhhhccccccceeeeecCcccccCC
Q psy5192 261 VVALFAICWLPLQTYNVLQGIFPSINSYHYINIVFFCCDWLAMSNSCYNPFIYGIYNDKERKKN 324 (324)
Q Consensus 261 ~~~~f~~~~~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~npiiy~~~~~~~R~~~ 324 (324)
....=.++..|......+........ . ...........+.+.+||++....-+-|||++
T Consensus 232 Q~~lP~~~~~p~~~~~~~~~~~~~~~--~---~~e~~~~~~~~~~~~~~P~itl~fv~PYR~~i 290 (292)
T PF10317_consen 232 QALLPLFFYIPGVIIYFLSQFTGYEH--P---FLEYLIFMLASLPPLIDPLITLYFVRPYRKAI 290 (292)
T ss_pred HHHhHHHHHHHHHHHHHHHHHhcccc--H---HHHHHHHHHHHHHHHhchHhheeeeHhHHHHh
Confidence 88888888898777766665543221 1 22233344677889999999999999999864
No 20
>PF10292 7TM_GPCR_Srab: Serpentine type 7TM GPCR receptor class ab chemoreceptor; InterPro: IPR019408 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. Srab is part of the Sra superfamily of chemoreceptors. The expression pattern of the srab genes is biologically intriguing. Of the six promoters successfully expressed in transgenic organisms, one was exclusively expressed in the tail phasmid neurons, two were exclusively expressed in a head amphid neuron, and two were expressed both in the head and tail neurons as well as a limited number of other cells [].
Probab=99.06 E-value=1.2e-08 Score=85.75 Aligned_cols=277 Identities=11% Similarity=0.077 Sum_probs=150.2
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhheeeeeeeecccccchhhHHHHHHHHHHHHHHHhhhhHHHHHHhhc-------cCCCC
Q psy5192 29 TSIIILLSVFYGTISVLAVVGNFLVIWIVATSRRMQNVTNCFIANLALADIVIGLFAIPFQFQAALLQ-------RWNLP 101 (324)
Q Consensus 29 ~~~~~~~~~~~~i~~~~gi~~N~~vl~~i~~~~~~~~~~~~~l~~La~~dll~~~~~~~~~~~~~~~~-------~~~~~ 101 (324)
...+. ...+..+++++|++.++..+..+.+++..|....+++....++.++.++........+.... +...+
T Consensus 14 ~~l~~-~~~~~~~~s~~~~~~~~~~~~~~~~~~~~H~N~ril~~~~~~~~l~~~~~r~~~h~~~l~~~~~~~~~Cd~~~~ 92 (324)
T PF10292_consen 14 SFLRL-SLIFNLLLSIIAFPVIIYALWKIRNSKLFHFNTRILFIVHCFSFLIHCTGRIILHTYDLYNYFFPDDPCDMIPS 92 (324)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhcchhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcccccc
Confidence 33444 33457778889999998887777777777888888888899999888765444333332221 12234
Q ss_pred ccccccchhhhHHHHHHHHHHHHHHHHHHHhHhhccCCcCCCccccc-eeehhHHHHHHHhhhhhheeeceeeeeeecCC
Q psy5192 102 NFMCPFCPFVQCLTVTVSVLTLTAIAVDRHRAILNPLSARPSKLRAK-ICIFGIWTLSSFLAAPMAIATGVTMEEEYTDP 180 (324)
Q Consensus 102 ~~~C~~~~~~~~~~~~~s~~~~~~is~dRy~~i~~p~~~~~~~~~~~-~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (324)
...|........++...+..+...+.+||++|-++..+|.+..+... ....+.|..+........ ... +.
T Consensus 93 ~~~C~~lR~~~~~~~~~~~~t~v~l~IER~iAT~~~~~YE~~~~~~Gi~l~~~qi~is~~~~~~~~--~~~----~~--- 163 (324)
T PF10292_consen 93 TYRCFILRIPYNFGLFLVSFTTVSLVIERTIATFFSKSYEKSGKWLGILLAFFQILISLLILYFVY--SDE----DF--- 163 (324)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcCCCccHHHHHHHHHHHHHHHHHHHHH--hhh----hc---
Confidence 45677778888899999999999999999999999988887544321 222222333332222111 111 11
Q ss_pred CCcccccccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccccHHHHhhhhhHHHHHHH
Q psy5192 181 AGRIHLKPFCTNIHLSDDTMILYRRVLAVVQYAIPLSVISFVYARMALRLWGSKAPGNAQDSRDATLMKNKKKVIKMLVI 260 (324)
Q Consensus 181 ~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~ip~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (324)
.....+.|.....+.............+.-++ ..+.+..+.++-+|.+++.....-.++=+.+++.|..+.+..
T Consensus 164 --~~~~~~yC~~~~~~~~~~~~~~~~~~~~~~i~----~~i~f~~L~~~Nkk~r~~~~~~~LS~RYQl~ENl~slr~L~p 237 (324)
T PF10292_consen 164 --PNERMYYCQASSSSSPYRVNIPFIVILVLQIL----ALILFRYLLRKNKKLRKQQKHSTLSERYQLEENLRSLRLLKP 237 (324)
T ss_pred --cCccceeeEEecCCCchhhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhhccCCCcchHHhHHhHHHHHHHHHH
Confidence 00012337654433222222211222222122 222223333333333333333333344455667777777766
Q ss_pred HHHHHHHhhhhHHHHHHHhh-hccCccchhHHHHHHHHHHHhhhccccccceeeeecCcccccC
Q psy5192 261 VVALFAICWLPLQTYNVLQG-IFPSINSYHYINIVFFCCDWLAMSNSCYNPFIYGIYNDKERKK 323 (324)
Q Consensus 261 ~~~~f~~~~~P~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~npiiy~~~~~~~R~~ 323 (324)
++.+..+.-..+........ +.++.+...... +.. .......++.+-|++.....++.|++
T Consensus 238 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~y~a-l~e-~~~~~P~Y~ii~~~~~~~~~k~~r~~ 299 (324)
T PF10292_consen 238 FIILSSIFIFFYIFASIFLRLFNPSMSKPNYFA-LAE-LNHIFPLYSIISPLILYRKIKKIRKK 299 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCChhhHHH-HHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66665554444444433333 223332222221 212 22345567788888888877777664
No 21
>PF11710 Git3: G protein-coupled glucose receptor regulating Gpa2; InterPro: IPR023041 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor. Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This is the conserved N-terminal domain of the member proteins.
Probab=99.04 E-value=8.2e-09 Score=79.79 Aligned_cols=162 Identities=19% Similarity=0.108 Sum_probs=99.9
Q ss_pred ccccchhhHHHHHHHHHHHHHHHhhhhHHHHHHhhccCCCCccccccchhhhHHHHHHHHHHHHHHHHHHHhHhhccCC-
Q psy5192 61 RRMQNVTNCFIANLALADIVIGLFAIPFQFQAALLQRWNLPNFMCPFCPFVQCLTVTVSVLTLTAIAVDRHRAILNPLS- 139 (324)
Q Consensus 61 ~~~~~~~~~~l~~La~~dll~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~~~~is~dRy~~i~~p~~- 139 (324)
++++.-.+.++.||.++|++.++..+.........+.-..++..|..++++.+.+..++.+...+||++-|+.+.+|-.
T Consensus 30 ~r~~~fR~~LIl~L~~aD~~qal~~~i~~~~~l~~~~i~~~s~~C~aqGf~~q~g~~~sd~~ilaIAihT~l~v~~~~~~ 109 (201)
T PF11710_consen 30 YRRRSFRHQLILNLLLADFIQALAFLISPIRWLARGGIIAPSPFCQAQGFFLQVGDEASDLWILAIAIHTFLIVFRPNWK 109 (201)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 3345556669999999999998866654454444444455679999999999999999999999999999999999921
Q ss_pred ---cCC---C-ccccceeehhHHHHHHHhhhhhheeeceeeeeeecCCCCcccccccccccCCCchhHHHHHHHHHHHHH
Q psy5192 140 ---ARP---S-KLRAKICIFGIWTLSSFLAAPMAIATGVTMEEEYTDPAGRIHLKPFCTNIHLSDDTMILYRRVLAVVQY 212 (324)
Q Consensus 140 ---~~~---~-~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~ 212 (324)
.+. . .+....+....+++..+.+.......+... +.+ ....|........ +-.....+-.
T Consensus 110 ~~~~~~~~~gl~~~~~~v~~~~~~~~~~~~~la~i~~~~~~---Y~~------~g~WCWi~~~~~~----~Rl~l~y~~~ 176 (201)
T PF11710_consen 110 RKRSKNVEGGLYPYRYWVWVIWILVPLLLASLAFIGLGGPG---YGP------AGAWCWIPSRYEW----YRLWLHYIWR 176 (201)
T ss_pred cccccccccceEEeeeeeehHHHHHHHHHHHHHHhccccCc---ccc------cCcEEEECCCcHH----HHHHHHHHHH
Confidence 111 1 111122222233344443333333211111 111 1234754333322 2224444555
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCC
Q psy5192 213 AIPLSVISFVYARMALRLWGSKA 235 (324)
Q Consensus 213 ~ip~~i~~~~~~~i~~~~~~~~~ 235 (324)
++....+++.|..++..+||+.+
T Consensus 177 ~~~~~~~i~iY~~if~~lrr~~~ 199 (201)
T PF11710_consen 177 FIIIFAIIIIYIAIFFYLRRRIR 199 (201)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhc
Confidence 66777888889999988887654
No 22
>PF02118 Srg: Srg family chemoreceptor; InterPro: IPR000609 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class g (Srg) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures. ; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016020 membrane
Probab=99.04 E-value=2.8e-09 Score=87.86 Aligned_cols=257 Identities=12% Similarity=0.111 Sum_probs=141.1
Q ss_pred HHHHHHhhhhheeeeeeeeccc--c-cchhhHHHHHHHHHHHHHHHhhhhH-HHHHH-------hhccCCCCccccccch
Q psy5192 41 TISVLAVVGNFLVIWIVATSRR--M-QNVTNCFIANLALADIVIGLFAIPF-QFQAA-------LLQRWNLPNFMCPFCP 109 (324)
Q Consensus 41 i~~~~gi~~N~~vl~~i~~~~~--~-~~~~~~~l~~La~~dll~~~~~~~~-~~~~~-------~~~~~~~~~~~C~~~~ 109 (324)
+-++.|++.+..+++++.++|+ . +++.+.+...-++.|++.-+...+. .+... ............++..
T Consensus 6 ~Ygi~s~~l~~~~~~~i~~~~~~~~~~~sFy~l~~~d~~~ni~~~ln~~~~~Rl~~~~~~~~~~~~~~~~~~~~~l~~~~ 85 (275)
T PF02118_consen 6 IYGIPSLILYIFILYVIWKSKKKSYFKSSFYRLYIMDLIMNILTYLNTWITLRLPSYTPPFCPFFLPFFENPPFFLNIFY 85 (275)
T ss_pred hHHHHHHHHHHHHHHHHHHhccccccCCccHHHHHHHhHHHHHHHHHHHHHHHhccccCccchhHHHHHcCCcHHHHHHH
Confidence 3456777788888888877766 3 6777877777777777664433221 11111 0000122234556667
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhHhhccCCcCC-CccccceeehhHHHHHHHhhhhhheeeceeeeeeecCCCCcccccc
Q psy5192 110 FVQCLTVTVSVLTLTAIAVDRHRAILNPLSARP-SKLRAKICIFGIWTLSSFLAAPMAIATGVTMEEEYTDPAGRIHLKP 188 (324)
Q Consensus 110 ~~~~~~~~~s~~~~~~is~dRy~~i~~p~~~~~-~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (324)
++...+..+.......+++||+-++..|.++.+ .++..+.+++++...++....+.... ........ +......
T Consensus 86 ~l~~~~~~~Q~~~~~~is~nR~t~v~~p~~~~~~W~~~~~~~i~~i~~~p~~~~~~~~~~-~~~~~~~~--~~~~~~~-- 160 (275)
T PF02118_consen 86 FLQYYFAYVQYLSTILISLNRFTSVLFPIRYEKFWKRYYWIIIIIIFLLPFSFTWNIFIS-PTYVVYDN--GGFSYSY-- 160 (275)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhHHHHhhhhhheeeeeehhHHHHHHHHcc-ccEEEEEC--CceEEEE--
Confidence 788888889999999999999999999998877 33444344444555555544444332 22222111 1110000
Q ss_pred cccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccccHHHHhhhhhHHHHHHHHHHHHHHh
Q psy5192 189 FCTNIHLSDDTMILYRRVLAVVQYAIPLSVISFVYARMALRLWGSKAPGNAQDSRDATLMKNKKKVIKMLVIVVALFAIC 268 (324)
Q Consensus 189 ~c~~~~~~~~~~~~~~~~~~~~~~~ip~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 268 (324)
.. ..+ ...........+++..++.+.++....+++++.+++. ++.|++..+........+.+.
T Consensus 161 -~~--~~~----~~~~~~~~~~~~i~~~ii~i~~~~~~~~~l~~~~~~~----------~~~er~L~~is~~~~~~~~~~ 223 (275)
T PF02118_consen 161 -ND--TVS----WASLSIFSLIYFIIIIIITIITNIITYRRLRKLSKRI----------KSVERNLTIISFIISFVQLLI 223 (275)
T ss_pred -Ee--ccc----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh----------hHHHHHHHHHHHHHHHHHHHH
Confidence 00 001 1111123334445556666677777777777654221 234667777766666666655
Q ss_pred hhhHHHHHHHhhhccCccchhHHHHHHHHHHHhhhccccccceeeeecCcccccC
Q psy5192 269 WLPLQTYNVLQGIFPSINSYHYINIVFFCCDWLAMSNSCYNPFIYGIYNDKERKK 323 (324)
Q Consensus 269 ~~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~npiiy~~~~~~~R~~ 323 (324)
-....+.... ...+..+ .............-.-+...|++-...|++.||+
T Consensus 224 ~~~~~~~~~~-~~~~~~~---~~~~~~~~~~f~sD~ltl~~P~iLl~fs~~vR~~ 274 (275)
T PF02118_consen 224 AIWQIINSFA-FFFDFLP---ISSFLYYLLPFASDLLTLSQPYILLIFSKNVRRQ 274 (275)
T ss_pred HHHHHHHHHH-Hhhcccc---HHHHHHHHHHHHHHHHHHHHHHHHheECHhhhcc
Confidence 5444442111 1111111 1122222222333344566799999999999986
No 23
>PF10327 7TM_GPCR_Sri: Serpentine type 7TM GPCR chemoreceptor Sri; InterPro: IPR019429 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents Sri, which is part of the Str superfamily of chemoreceptors.
Probab=99.01 E-value=3.7e-08 Score=81.71 Aligned_cols=274 Identities=16% Similarity=0.149 Sum_probs=161.5
Q ss_pred HHHHHHHHHHHHHhhhhheeeeeeeec-ccccchhhHHH---HHHHHHHHHHHHhhhhHHHHHHhhccCCCC------cc
Q psy5192 34 LLSVFYGTISVLAVVGNFLVIWIVATS-RRMQNVTNCFI---ANLALADIVIGLFAIPFQFQAALLQRWNLP------NF 103 (324)
Q Consensus 34 ~~~~~~~i~~~~gi~~N~~vl~~i~~~-~~~~~~~~~~l---~~La~~dll~~~~~~~~~~~~~~~~~~~~~------~~ 103 (324)
++...+-++++++++.|.+.++.+..+ ++.++-.++++ ....++|+-.+.+..|..+.....+. ..| +.
T Consensus 10 ~li~~~~~ig~iS~~~n~~~iyLi~fks~k~~~fry~ll~~Qi~~~l~di~~t~L~qpipLfP~~agy-~~G~l~~~f~i 88 (303)
T PF10327_consen 10 WLINYYHIIGVISFILNSLGIYLIIFKSPKLDNFRYYLLYFQISCTLTDIHLTFLMQPIPLFPIPAGY-CVGFLARYFGI 88 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHheeEEEecCCccchhhHHHHHHHHHHHhhhhhhhhccchhhcceeEEE-EEeehhhcCCC
Confidence 345667788999999999999877654 44444333332 34578999998899998887765432 122 12
Q ss_pred ccccchhhhHHHHHHHHHHHHHHHHHHHhHhhccCCcCCCccccc-eeehhHHHHHHHhhhhhheeeceeeeeeecCCCC
Q psy5192 104 MCPFCPFVQCLTVTVSVLTLTAIAVDRHRAILNPLSARPSKLRAK-ICIFGIWTLSSFLAAPMAIATGVTMEEEYTDPAG 182 (324)
Q Consensus 104 ~C~~~~~~~~~~~~~s~~~~~~is~dRy~~i~~p~~~~~~~~~~~-~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (324)
.+........+......-.++.--+-|.-+|.+..+.+.-++... ..........+...... ...+...++...-.
T Consensus 89 ~~h~~~~i~~~l~~~q~~~L~~CF~~KHQaIa~i~~~~~l~~~~~~~~~~~~~~~p~~~~~~~-~~~~~s~eeq~~yI-- 165 (303)
T PF10327_consen 89 SSHYLMTIWIFLFIFQIESLVICFLRKHQAIARILSKHVLPKWFYIFFYFFCILFPFFIFICF-YFSGMSREEQMEYI-- 165 (303)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcCcHHHHHHHhhHHHHHHHHHHHHH-HhcCCCHHHHHHHH--
Confidence 233333444445555555566667788999988876665333333 33333333344333322 22222111110000
Q ss_pred cccccccccccC--------CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccccHHHHhhhhhH
Q psy5192 183 RIHLKPFCTNIH--------LSDDTMILYRRVLAVVQYAIPLSVISFVYARMALRLWGSKAPGNAQDSRDATLMKNKKKV 254 (324)
Q Consensus 183 ~~~~~~~c~~~~--------~~~~~~~~~~~~~~~~~~~ip~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (324)
-...|.|.... .+.+............+.........++...+.+.+++.+++. +++..++++++
T Consensus 166 -~~nyP~~~~~F~~l~nf~iY~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~L~~~k~~i------S~~ty~kHk~a 238 (303)
T PF10327_consen 166 -RENYPEYLSWFSSLPNFAIYDFNPWFIFFFILAFFGGFLCFVIFIFLTIDMFRMLKKLKKKI------SKQTYQKHKEA 238 (303)
T ss_pred -HhhCCchhHHHhcCCCEEEEeChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------CHHHHHHHHHH
Confidence 00011222111 1222333344445556666777788888888888887665432 22344668888
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHhhhccCccchhHHHHHHHHHHHhhhccccccceeeeecCcccccC
Q psy5192 255 IKMLVIVVALFAICWLPLQTYNVLQGIFPSINSYHYINIVFFCCDWLAMSNSCYNPFIYGIYNDKERKK 323 (324)
Q Consensus 255 ~~~~~~~~~~f~~~~~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~npiiy~~~~~~~R~~ 323 (324)
.+.+....++-.+|-+|..+........ .++.+ ............+|.+|-++-.++++.|||-
T Consensus 239 v~SLi~Q~~~~~i~~~P~~~~~~~~~~~--~~~~q---~i~~~~~~~f~~HS~~n~ivli~t~ppYR~f 302 (303)
T PF10327_consen 239 VRSLIAQFATSSICILPPFIFVVVVIFE--FEDAQ---VISEICLAIFSSHSSVNMIVLIITTPPYRKF 302 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhheec--CCCcH---HHHHHHHHHHHHhhHhhheeeeEcCcchhhc
Confidence 8999988888888889988766543332 12222 2334444577789999999999999999985
No 24
>PF02101 Ocular_alb: Ocular albinism type 1 protein; InterPro: IPR001414 Ocular albinism type 1 (OA1) is an X-linked disorder characterised by severe impairment of visual acuity, retinal hypopigmentation and the presence of macromelanosomes. A novel transcript from the OA1 critical region is expressed in high levels in RNA samples from retina and from melanoma and encodes a potential integral membrane protein []. This protein is of unknown function but is known to bind heterotrimeric G proteins.; GO: 0016020 membrane
Probab=98.90 E-value=1.9e-07 Score=76.65 Aligned_cols=258 Identities=16% Similarity=0.124 Sum_probs=135.2
Q ss_pred HHHHHHHHHHHhhhhheeeeeeeeccc----cc--chhhHHHHHHHHHHHHHHHhhhhHHHHHHhhccCC----------
Q psy5192 36 SVFYGTISVLAVVGNFLVIWIVATSRR----MQ--NVTNCFIANLALADIVIGLFAIPFQFQAALLQRWN---------- 99 (324)
Q Consensus 36 ~~~~~i~~~~gi~~N~~vl~~i~~~~~----~~--~~~~~~l~~La~~dll~~~~~~~~~~~~~~~~~~~---------- 99 (324)
..+-...+++|+.|-++-++--.|... .+ ....-.+..++++|++.++-.+.-........+..
T Consensus 30 ~avCLgSs~l~l~gallQLlp~rr~~~~~~~~~sp~~~~rIl~~la~aDlLaclGVivRS~vWl~~p~~~~s~s~~~~~d 109 (405)
T PF02101_consen 30 NAVCLGSSVLSLLGALLQLLPRRRSAGPRAPARSPSSSRRILFWLAVADLLACLGVIVRSSVWLGFPNFIDSISDVNGTD 109 (405)
T ss_pred hhhHHHHHHHHHHHHHHhhccccccccccccccCCcCCchhHHHHHHHHHHhhhhHHHHhhhhhcCCcccccccCCCCCc
Confidence 334455666777777766653322111 01 12346888999999998764444333333222211
Q ss_pred -CCccccccchhhhHHHHHHHHHHHHHHHHHHHhHhhccCCcCCCccccceeehhHHHHHHHhhhhhheeeceeeeeeec
Q psy5192 100 -LPNFMCPFCPFVQCLTVTVSVLTLTAIAVDRHRAILNPLSARPSKLRAKICIFGIWTLSSFLAAPMAIATGVTMEEEYT 178 (324)
Q Consensus 100 -~~~~~C~~~~~~~~~~~~~s~~~~~~is~dRy~~i~~p~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~ 178 (324)
.+...|.......++++.++.|.+.+-|+|-|+.+.+. ..+.+.+..-..+|..+.++..--....... +.
T Consensus 110 ~wp~afCv~ss~WIq~fYsAtfwWtfcYAVDv~Lv~~~~----ag~~~~~lYH~~aWgl~~lL~~~Gl~~Ly~P---s~- 181 (405)
T PF02101_consen 110 IWPAAFCVGSSMWIQLFYSATFWWTFCYAVDVYLVIRRS----AGRSTIWLYHMMAWGLPALLCAEGLAMLYYP---SI- 181 (405)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhheeecc----CCCcchhHHHHHHHHHHHHHHHhccceeecC---CH-
Confidence 12256888777888899999999999999999987432 1222333445568998888776433322211 10
Q ss_pred CCCCcccccccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccccHHHHhhhhhHHHHH
Q psy5192 179 DPAGRIHLKPFCTNIHLSDDTMILYRRVLAVVQYAIPLSVISFVYARMALRLWGSKAPGNAQDSRDATLMKNKKKVIKML 258 (324)
Q Consensus 179 ~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~ip~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (324)
..|...... ..-..+...+-.++-++.--+.|.+..+++-+.-+.++. .-..+.++...+.-+..
T Consensus 182 ---------~~Ce~~l~~----alphYvttY~PlllVlvaNPiLy~~a~~~V~~~lk~r~g--~yT~~ER~l~~~IK~kF 246 (405)
T PF02101_consen 182 ---------SRCESGLEH----ALPHYVTTYIPLLLVLVANPILYIKAVRAVASLLKGRQG--IYTENERRLGAQIKIKF 246 (405)
T ss_pred ---------Hhhhhhhhh----cchhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhccc--cccHHHHHHHHHHHHHH
Confidence 115322111 111112222222222223334455554444433332221 11122223334445566
Q ss_pred HHHHHHHHHhhhhHHHHHHHhhhcc---Ccc------chhHHHHHHHHHHHhhhccccccceee-eec
Q psy5192 259 VIVVALFAICWLPLQTYNVLQGIFP---SIN------SYHYINIVFFCCDWLAMSNSCYNPFIY-GIY 316 (324)
Q Consensus 259 ~~~~~~f~~~~~P~~i~~~~~~~~~---~~~------~~~~~~~~~~~~~~l~~~~~~~npiiy-~~~ 316 (324)
+.+.++|.+||+|..+-.++..... +.. .........++..++--++.++|-++| .+.
T Consensus 247 f~I~lVF~iCWlpNIINg~LL~~l~~~~~i~~~sl~~~~~a~~t~W~IMaIlNPlQgfLnsLay~gWt 314 (405)
T PF02101_consen 247 FKIMLVFYICWLPNIINGSLLFYLEMQPDINGGSLKQVRNAALTTWFIMAILNPLQGFLNSLAYYGWT 314 (405)
T ss_pred HHHHHHHHHHhhhhhHhHHHHHHhhcccccccccccchhhHHHHHHHHHHHHhHHHHHHHHHhhccCC
Confidence 7788899999999988766543311 111 112233344555556666677888886 544
No 25
>PF10319 7TM_GPCR_Srj: Serpentine type 7TM GPCR chemoreceptor Srj; InterPro: IPR019423 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class j (Srj) from the Str superfamily [, ]. The Srj family is designated as the out-group based on its location in preliminary phylogenetic analyses of the entire superfamily [].
Probab=98.74 E-value=1.1e-06 Score=71.15 Aligned_cols=273 Identities=9% Similarity=-0.008 Sum_probs=143.6
Q ss_pred HHHHHHHHhhhhheeeeeeeeccccc-chhhHHHHHHHHHHHHHHHhhhhHHHHHHhh---------ccCC-CCcccccc
Q psy5192 39 YGTISVLAVVGNFLVIWIVATSRRMQ-NVTNCFIANLALADIVIGLFAIPFQFQAALL---------QRWN-LPNFMCPF 107 (324)
Q Consensus 39 ~~i~~~~gi~~N~~vl~~i~~~~~~~-~~~~~~l~~La~~dll~~~~~~~~~~~~~~~---------~~~~-~~~~~C~~ 107 (324)
--+.++++.+.|.+-++.+..+|+.+ -...+++..-|+-|++.++.-+...+...-. ++|- .....-+.
T Consensus 11 Pk~~~~lsf~~Np~fiyli~~~~~~~~G~Yr~LL~~Fa~fn~~~S~~~~~vp~~vh~yry~F~~fi~dG~F~~~s~l~~~ 90 (310)
T PF10319_consen 11 PKIFGILSFIVNPIFIYLIFTEKKSQFGNYRYLLLFFAIFNLIYSVVDLLVPICVHGYRYAFVVFISDGPFFEKSELGQH 90 (310)
T ss_pred HHHHHHHHHHHhhhhheeEEcccccccccHHHHHHHHHHHHHHHHHHHHHhhheeeccceEEEEEEcCCcCcCcchHHHH
Confidence 34568889999999999999888766 4445788889999999888544433321111 1111 11122222
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHhHhhccCCcCC--CccccceeehhHHHHHHHhhhhhheeeceee------ee----
Q psy5192 108 CPFVQCLTVTVSVLTLTAIAVDRHRAILNPLSARP--SKLRAKICIFGIWTLSSFLAAPMAIATGVTM------EE---- 175 (324)
Q Consensus 108 ~~~~~~~~~~~s~~~~~~is~dRy~~i~~p~~~~~--~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~------~~---- 175 (324)
....-..+..+|-..+..--+.||+++++|...++ .+......+..+-.....+............ .+
T Consensus 91 ~ls~RCsfIs~sYaIL~~HFvYRYl~l~~~~~~~~~F~p~gl~~s~~~~~~h~~~W~~ic~~~~~ad~EiR~YIre~F~e 170 (310)
T PF10319_consen 91 LLSIRCSFISGSYAILHIHFVYRYLVLFNSKFINKYFMPYGLIGSILYCLFHFASWHVICYFCMYADDEIRDYIRESFRE 170 (310)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHhCcHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHH
Confidence 33334455556677778888999999999863322 2222222111111111222211111111000 00
Q ss_pred eec-CCCCcccccccccccCCCch--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccccHHHHhhhh
Q psy5192 176 EYT-DPAGRIHLKPFCTNIHLSDD--TMILYRRVLAVVQYAIPLSVISFVYARMALRLWGSKAPGNAQDSRDATLMKNKK 252 (324)
Q Consensus 176 ~~~-~~~~~~~~~~~c~~~~~~~~--~~~~~~~~~~~~~~~ip~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (324)
.++ +..+.. ...+.....+++ ...+..+....+.-.....+..+.-.+|.+++++.... -+++..+-++
T Consensus 171 ~YG~Ds~diN--ml~alY~eaS~~~v~rSW~gi~~~T~iS~~Si~~y~vlg~~I~~kL~~~~~~------mS~~T~~lq~ 242 (310)
T PF10319_consen 171 VYGVDSMDIN--MLIALYNEASDETVFRSWIGIIILTIISSYSIILYFVLGYKIMKKLNKMSST------MSKKTKRLQR 242 (310)
T ss_pred HhCCCCCcCc--eEeeeeccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhh------hCHhHHHHHH
Confidence 111 111110 111222111221 11222222233333334444445555666666543322 2223345577
Q ss_pred hHHHHHHHHHHH-HHHhhhhHHHHHHHhhhccCccchhHHHHHHHHHHHhhhccccccceeeeecCcccccCC
Q psy5192 253 KVIKMLVIVVAL-FAICWLPLQTYNVLQGIFPSINSYHYINIVFFCCDWLAMSNSCYNPFIYGIYNDKERKKN 324 (324)
Q Consensus 253 ~~~~~~~~~~~~-f~~~~~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~npiiy~~~~~~~R~~~ 324 (324)
+..|.+.+.+++ -+++..|..+......+..+ ...+...........-+.+||+.-.+.-|.+|++.
T Consensus 243 qL~~AL~vQT~IPi~vsf~Pc~~~wy~pif~i~-----~~~~~n~~~~iAls~FPf~DPlAii~~lP~~R~ri 310 (310)
T PF10319_consen 243 QLFKALIVQTVIPICVSFSPCVLSWYGPIFGID-----LGRWNNYFSVIALSAFPFLDPLAIILCLPAFRNRI 310 (310)
T ss_pred HHHHHHHHHHHhHHHHhhccHHHHHhHHHHcCC-----hhHHHHHHHHHHHHHccccCchHhheecHHhhccC
Confidence 888888877665 56888997776543333222 22345556666777899999999999999999974
No 26
>PF10316 7TM_GPCR_Srbc: Serpentine type 7TM GPCR chemoreceptor Srbc ; InterPro: IPR019420 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class b (Srb) from the Sra superfamily []. Srb receptors contain 6-8 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures. Srbc is a solo family amongst the superfamilies of chemoreceptors.
Probab=98.70 E-value=1.7e-06 Score=69.96 Aligned_cols=117 Identities=13% Similarity=0.136 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHHHhhhhheeeeeeeecccccchhhHHHHHHHHHHHHHHHhhhhHHHHHHhhc---cCCCCccccccch
Q psy5192 33 ILLSVFYGTISVLAVVGNFLVIWIVATSRRMQNVTNCFIANLALADIVIGLFAIPFQFQAALLQ---RWNLPNFMCPFCP 109 (324)
Q Consensus 33 ~~~~~~~~i~~~~gi~~N~~vl~~i~~~~~~~~~~~~~l~~La~~dll~~~~~~~~~~~~~~~~---~~~~~~~~C~~~~ 109 (324)
.+...+-.+.+.+....|..++..+..+|+.|++...+.-.....|.+.+....+...+..... +.......=-..+
T Consensus 6 ~iv~~i~i~~s~~~~~iN~~lL~~if~~Kk~kk~~l~LfY~Rf~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~ 85 (273)
T PF10316_consen 6 IIVSIIGIIFSIITCLINFYLLYSIFYSKKKKKPDLSLFYFRFAIDVFYGFSVFIYLIYYILFSLFPEFLDYKNLIFYIG 85 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCEEeeHHHHHHHHHHHHHHHHHHHHHHHHHhChhhhccccEEeehh
Confidence 3455666778889999999999998876665566666777789999999887776655544431 1110112222334
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhHhhccCCcCCCccccce
Q psy5192 110 FVQCLTVTVSVLTLTAIAVDRHRAILNPLSARPSKLRAKI 149 (324)
Q Consensus 110 ~~~~~~~~~s~~~~~~is~dRy~~i~~p~~~~~~~~~~~~ 149 (324)
................||+||.+|+..|..|++.+++...
T Consensus 86 ~p~~~~~~iR~~l~~~Ia~dR~~A~~fPI~y~~~r~k~~~ 125 (273)
T PF10316_consen 86 WPSSNLGSIRSILALIIALDRVFAVYFPIFYHNYRKKIPN 125 (273)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHccCccccH
Confidence 4555566678889999999999999999988775554443
No 27
>PF02117 7TM_GPCR_Sra: Serpentine type 7TM GPCR chemoreceptor Sra; InterPro: IPR000344 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class a (Sra) from the Sra superfamily []. Sra receptors contain 6-7 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane
Probab=98.49 E-value=1.4e-05 Score=67.21 Aligned_cols=108 Identities=17% Similarity=0.141 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHHhhhhheeeeeeeecccccchh-hHHHHHHHHHHHHHHHhhhhHHHH---HHhh--c---cCCCCccc
Q psy5192 34 LLSVFYGTISVLAVVGNFLVIWIVATSRRMQNVT-NCFIANLALADIVIGLFAIPFQFQ---AALL--Q---RWNLPNFM 104 (324)
Q Consensus 34 ~~~~~~~i~~~~gi~~N~~vl~~i~~~~~~~~~~-~~~l~~La~~dll~~~~~~~~~~~---~~~~--~---~~~~~~~~ 104 (324)
+...+..++.+++.++....+-.+.++.-..+.+ .+++.+|.-+++=- +........ ..+. + +..+.+..
T Consensus 22 ~~~~~~~~~~~~t~~~s~~Ai~~l~~ksif~~sTr~LL~~~l~~a~~Hq-~~y~~~~~~~lyrsf~~~~dpC~i~f~~~e 100 (328)
T PF02117_consen 22 INQIFILIIIIITFIFSVFAIKKLWKKSIFSNSTRILLISNLLFANIHQ-ISYAIIQIWSLYRSFFYSDDPCSILFTSSE 100 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCCCCeeeEeecCc
Confidence 3455566667777877777776666655555444 45556666555433 222222222 2221 1 23355678
Q ss_pred cccchhhhHHHHHHHHHHHHHHHHHHHhHhhccCCcCC
Q psy5192 105 CPFCPFVQCLTVTVSVLTLTAIAVDRHRAILNPLSARP 142 (324)
Q Consensus 105 C~~~~~~~~~~~~~s~~~~~~is~dRy~~i~~p~~~~~ 142 (324)
|........++.....+..+++.+||.+|-..|..+++
T Consensus 101 C~~~~~~~~~~~~~~~~~q~aL~idRl~at~~~~~~~~ 138 (328)
T PF02117_consen 101 CFPYYYFYYFTNSGMIFIQFALTIDRLLATFFPKYYSK 138 (328)
T ss_pred eeeeehHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhh
Confidence 99999999999999999999999999999988864443
No 28
>PF00002 7tm_2: 7 transmembrane receptor (Secretin family); InterPro: IPR000832 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The secretin-like GPCRs include secretin [], calcitonin [], parathyroid hormone/parathyroid hormone-related peptides [] and vasoactive intestinal peptide [], all of which activate adenylyl cyclase and the phosphatidyl-inositol-calcium pathway. These receptors contain seven transmembrane regions, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins (however there is no significant sequence identity between these families, the secretin-like receptors thus bear their own unique '7TM' signature). Their N terminus is probably located on the extracellular side of the membrane and potentially glycosylated. This N-terminal region contains a long conserved region which allow the binding of large peptidic ligand such as glucagon, secretin, VIP and PACAP; this region contains five conserved cysteines residues which could be involved in disulphide bond. The C-terminal region of these receptor is probably cytoplasmic. Every receptor gene in this family is encoded on multiple exons, and several of these genes are alternatively spliced to yield functionally distinct products. ; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 3L2J_A 1BL1_A.
Probab=98.48 E-value=5.6e-08 Score=78.57 Aligned_cols=130 Identities=12% Similarity=0.095 Sum_probs=4.1
Q ss_pred HHHHHHHHHHhhhhheeeeeeeecccccchhhHHHHHHHHHHHHHHHhhhhHHHHHHhhccCCCCccccccchhhhHHHH
Q psy5192 37 VFYGTISVLAVVGNFLVIWIVATSRRMQNVTNCFIANLALADIVIGLFAIPFQFQAALLQRWNLPNFMCPFCPFVQCLTV 116 (324)
Q Consensus 37 ~~~~i~~~~gi~~N~~vl~~i~~~~~~~~~~~~~l~~La~~dll~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~ 116 (324)
++..+-+.+++++-.+.+......|++|+..+....||++++++..+..+.. ......+....++..|...+.+.+.+.
T Consensus 5 ~i~~vg~~~Si~~ll~~i~~~~~~r~lr~~~~~i~~~l~~sll~~~~~~l~~-~~~~~~~~~~~~~~~C~~~a~~~hy~~ 83 (242)
T PF00002_consen 5 IISYVGCSLSIICLLLTIITYLLFRKLRSFRNKIHLNLCLSLLLANLSFLIG-ISQTFSPISTTNHCLCRAIAILLHYFF 83 (242)
T ss_dssp HHHHHHHH------------------------------------------------------------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhHHHHHHHHHHHhee-hhhccccccccccccchhhhhHhHHHH
Confidence 4445555666666666666666667778777888999999998876644332 111111111112335999999999999
Q ss_pred HHHHHHHHHHHHHHHhHhhccCCcCCCccccceeehhHHHHHHHhhhhhheee
Q psy5192 117 TVSVLTLTAIAVDRHRAILNPLSARPSKLRAKICIFGIWTLSSFLAAPMAIAT 169 (324)
Q Consensus 117 ~~s~~~~~~is~dRy~~i~~p~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 169 (324)
.++...+.+.++|-|..+.++... .+++.+...+..|..+.+.........
T Consensus 84 la~f~Wm~~~~~~l~~~~~~~~~~--~~~~~~~~~~~gwg~P~~iv~i~~~~~ 134 (242)
T PF00002_consen 84 LASFFWMLVEAFYLYRLLVKVFNS--SRRRFWWYYLIGWGIPALIVVISVAVN 134 (242)
T ss_dssp -----------------------------------------------------
T ss_pred HHHHHHHHHHHHHhheeEEEeecc--cchhhheeeeeeecCcceeeeeeeeec
Confidence 999999999999999999887422 244556666778998888776654433
No 29
>PF10318 7TM_GPCR_Srh: Serpentine type 7TM GPCR chemoreceptor Srh; InterPro: IPR019422 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. Srh is part of the Str superfamily of chemoreceptors [].
Probab=98.32 E-value=1.6e-05 Score=66.58 Aligned_cols=274 Identities=13% Similarity=0.097 Sum_probs=146.0
Q ss_pred HHHHHHHHHHHHhhhhheeeeeeeec-ccccchhhHH----HHHHHHHHHHHHHhhhhHHHHHHhhcc----CCCCcccc
Q psy5192 35 LSVFYGTISVLAVVGNFLVIWIVATS-RRMQNVTNCF----IANLALADIVIGLFAIPFQFQAALLQR----WNLPNFMC 105 (324)
Q Consensus 35 ~~~~~~i~~~~gi~~N~~vl~~i~~~-~~~~~~~~~~----l~~La~~dll~~~~~~~~~~~~~~~~~----~~~~~~~C 105 (324)
.....-++.+++++-|.+..+.+.++ ++.-+..... .....+.|+..+.+..|........+. ...-+...
T Consensus 6 ~~~~~h~~~~i~~Pi~~~~~y~Il~ktp~~m~~~k~~ll~~~~~~~~~d~~~~~l~~P~~~~P~~~~~~~G~l~~~gv~~ 85 (302)
T PF10318_consen 6 YSIVLHIITIISIPIYIFGFYCILFKTPKSMKSVKWYLLNHHFWNFLLDLYLSFLIIPYFFFPSPAGYPLGILSYFGVPT 85 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHheeEeChhhhHHHHHHHHHHHHHHHHHHHHhhhEEeeeeccchHHhhCCcchhhcccCh
Confidence 33445566778888888888877665 3322333233 333557788888877775554433321 11112445
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHHHHhHhhccCCcCCCccccceeehhHHHHHHHhhhhhheeeceeeeeeec---CCCC
Q psy5192 106 PFCPFVQCLTVTVSVLTLTAIAVDRHRAILNPLSARPSKLRAKICIFGIWTLSSFLAAPMAIATGVTMEEEYT---DPAG 182 (324)
Q Consensus 106 ~~~~~~~~~~~~~s~~~~~~is~dRy~~i~~p~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 182 (324)
.++.+...........+...+--+||-++..+.++..+++........-++.+.....|...... +++.... +...
T Consensus 86 ~~q~~i~~~~~~~~~~S~~~lFe~R~~~i~~~~~~~~~~~~r~~~~~~~y~~~~~~~~~~~~~~p-dQ~~~k~~~~~~~p 164 (302)
T PF10318_consen 86 PIQFYIGVTLLAFVGVSILSLFENRYQIIIRNRSRSLWKKIRIIFIIFNYIIAFLFFIPIYLSIP-DQEEAKQEVLKKYP 164 (302)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccccchhhHHHHHHHHHHHHHHHHHHHhcCCc-cHHHHHHHHHhhcc
Confidence 66777777888888888899999999999966542222223333344445555555556554322 1111000 0000
Q ss_pred cccccccc-cccC--CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccccHHHHhhhhhHHHHHH
Q psy5192 183 RIHLKPFC-TNIH--LSDDTMILYRRVLAVVQYAIPLSVISFVYARMALRLWGSKAPGNAQDSRDATLMKNKKKVIKMLV 259 (324)
Q Consensus 183 ~~~~~~~c-~~~~--~~~~~~~~~~~~~~~~~~~ip~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (324)
+......| .... ..+.. +..........+....+++....+.+.++++.+ .+.+++.+|.++|..+.+.
T Consensus 165 c~~~~~~~~~~~fv~~~~~~---~~~~~~~~~~~~~~~~~~~f~~~~~~~l~~~~~-----~~~S~~T~k~Qkkfl~~l~ 236 (302)
T PF10318_consen 165 CPPPEFFDNPPVFVLSTDSW---YILIIIIIFLLIIFIQIIFFAFLIIYYLLKSQK-----KTMSKKTRKMQKKFLIALI 236 (302)
T ss_pred CCchhhcCCCCeEEEcCCch---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhch-----hhhCHHHHHHHHHHHHHHH
Confidence 00000011 1000 01111 222333333333444444444555555655544 1223334466788888887
Q ss_pred HHHHHHH-HhhhhHHHHHHHhhhccCccchhHHHHHHHHHHHhhhccccccceeeeecCcccccC
Q psy5192 260 IVVALFA-ICWLPLQTYNVLQGIFPSINSYHYINIVFFCCDWLAMSNSCYNPFIYGIYNDKERKK 323 (324)
Q Consensus 260 ~~~~~f~-~~~~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~npiiy~~~~~~~R~~ 323 (324)
+.+.+.. +.-.|........... ..+. ....+...+...++..+-++..+.++.+|+.
T Consensus 237 iQ~~ip~~~l~~P~~~~~~~~~~~--~~~q----~~~n~~~~~~~~HG~~sti~mi~~~~pYR~~ 295 (302)
T PF10318_consen 237 IQVLIPFIFLFIPLIYFIISIIFG--YYNQ----ALNNISFIIISLHGIASTIVMILVHKPYRKF 295 (302)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhcc--cccc----ccchHHHHHHHhccHHHHHHHhhccHHHHHH
Confidence 7666644 4566766654433222 1111 2233444577789999999999999999975
No 30
>PF04789 DUF621: Protein of unknown function (DUF621); InterPro: IPR006874 This is a conserved region found in uncharacterised proteins from Caenorhabditis elegans, and is noted to have possible G-protein-coupled receptor-like activity.
Probab=98.25 E-value=3.5e-05 Score=60.68 Aligned_cols=237 Identities=12% Similarity=0.144 Sum_probs=133.8
Q ss_pred cchhhHHHHHHHHHHHHHHHhhh----hHHHHHHhhccCCCCccccccchhhhHHHHHHHHHHHHHHHHHHHhHhhccCC
Q psy5192 64 QNVTNCFIANLALADIVIGLFAI----PFQFQAALLQRWNLPNFMCPFCPFVQCLTVTVSVLTLTAIAVDRHRAILNPLS 139 (324)
Q Consensus 64 ~~~~~~~l~~La~~dll~~~~~~----~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~~~~is~dRy~~i~~p~~ 139 (324)
+-+...++..|.++-.+.+.+-+ |..+......+. ..+..-.+..+...++..+-.+.=..+|++|.........
T Consensus 46 ~m~ffwFl~qlt~s~fi~S~lNl~inVPatlfsl~t~~~-~~s~~f~~~Sy~idf~h~siLfsNlviaIqR~fVFFfr~~ 124 (305)
T PF04789_consen 46 PMKFFWFLTQLTISVFIISSLNLLINVPATLFSLITKEF-VQSELFIFMSYLIDFCHYSILFSNLVIAIQRFFVFFFRNL 124 (305)
T ss_pred cchHHHHHHHHHHHHHHHHhhhheEeCcHHHHHhhhHHH-hccchhhHHHHHHHHHHHHHHHHHHHHHHhhheeeeehhh
Confidence 46677889999988887766444 444433333332 2234556667788888888899999999999886652211
Q ss_pred -cCC-CccccceeehhHHHHHHHhhhhhheeeceeeeeeecCCCCcccccccccccCC--CchhHHHHHHHHHHHHHHHH
Q psy5192 140 -ARP-SKLRAKICIFGIWTLSSFLAAPMAIATGVTMEEEYTDPAGRIHLKPFCTNIHL--SDDTMILYRRVLAVVQYAIP 215 (324)
Q Consensus 140 -~~~-~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~--~~~~~~~~~~~~~~~~~~ip 215 (324)
++. .+.-..+-+..+|+++........ ..++....+... -.....|..... +.+...........+.+.+|
T Consensus 125 t~~~F~s~~iyiWL~~vWils~~v~~~l~-~~nC~Y~y~~~~----~~y~L~C~~~~~~v~~~~P~~IqiiE~ilQ~~IP 199 (305)
T PF04789_consen 125 TDKVFESPVIYIWLLLVWILSIGVVYSLM-SNNCRYRYNKWS----KHYQLNCETCNSVVDISPPRGIQIIEIILQFGIP 199 (305)
T ss_pred hhhhccchHHHHHHHHHHHHHHHHHHHHH-hCCCeeeccccc----ccEEEEcCCCCeeEeeCCCCchhHHHHHHHHhHH
Confidence 111 334444556678888876654433 233333322211 112233554311 11111223336677788888
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCccccHHHHhhhhhHHHHHHHHHHHHHHhhhhHHHHHHHhhhccCccchhHHHHHH
Q psy5192 216 LSVISFVYARMALRLWGSKAPGNAQDSRDATLMKNKKKVIKMLVIVVALFAICWLPLQTYNVLQGIFPSINSYHYINIVF 295 (324)
Q Consensus 216 ~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~P~~i~~~~~~~~~~~~~~~~~~~~~ 295 (324)
+.+...--..+.|....++... .+.|.+..|....+.+.|-. +..+...-+.. +. +........
T Consensus 200 i~Il~iYiAIIiKI~~MKkssL----------nK~Ei~ILKQAifIFvlFQ~---ss~VFl~~qt~--~~-~~~tAFlIK 263 (305)
T PF04789_consen 200 IFILVIYIAIIIKIIKMKKSSL----------NKNEITILKQAIFIFVLFQA---SSCVFLLCQTF--KF-NVATAFLIK 263 (305)
T ss_pred HHHHHHHHHHHHHHHHHhhccC----------CchhHHHHHHHHHHHHHHHH---HHHHHHhheee--ee-cchHHHHHH
Confidence 8877654444444433222111 14477888877776555544 44333222222 11 122223344
Q ss_pred HHHHHhhhccccccceeeeecCccccc
Q psy5192 296 FCCDWLAMSNSCYNPFIYGIYNDKERK 322 (324)
Q Consensus 296 ~~~~~l~~~~~~~npiiy~~~~~~~R~ 322 (324)
.+.+.+.....+.-|-...+.++|.||
T Consensus 264 R~iNT~ei~agaatP~ffffTs~eirk 290 (305)
T PF04789_consen 264 RIINTMEIFAGAATPCFFFFTSKEIRK 290 (305)
T ss_pred HHHHHHHHHhhccCCeEEEEehHHHHH
Confidence 555667777888899999999999997
No 31
>PF10322 7TM_GPCR_Sru: Serpentine type 7TM GPCR chemoreceptor Sru; InterPro: IPR003839 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class u (Sru) from the Srg superfamily [].
Probab=98.14 E-value=0.00027 Score=58.41 Aligned_cols=205 Identities=14% Similarity=0.130 Sum_probs=116.3
Q ss_pred ccccccchhhhHHHHHHHHHHHHHHHHHHHhHhhccCCcCC-CccccceeehhHHHHHHHhhhhhheeeceeeeeeecCC
Q psy5192 102 NFMCPFCPFVQCLTVTVSVLTLTAIAVDRHRAILNPLSARP-SKLRAKICIFGIWTLSSFLAAPMAIATGVTMEEEYTDP 180 (324)
Q Consensus 102 ~~~C~~~~~~~~~~~~~s~~~~~~is~dRy~~i~~p~~~~~-~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (324)
+..=++..+....+...+...-.+.++-|.+.+..|.++++ .++-.+...-.+.+++++.+.|.....+.-..-+..-+
T Consensus 100 n~~Lk~l~~~~~~~~Y~s~lf~~Lfc~~Rl~il~~p~~~~~i~~~i~~~~~P~i~i~p~~~~f~~~pa~G~C~Ql~~Pf~ 179 (307)
T PF10322_consen 100 NHFLKILVFFYYYFNYSSMLFPVLFCLLRLIILYSPRNHKKICRKIFRIWIPFIFIYPFCFTFPMFPALGYCRQLDPPFP 179 (307)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHheeCccchhHHHHhHHHHHHHHHHHHHHHHHHHccCCcEEEEeCCCCCC
Confidence 34445667778888999999999999999999999987655 44444556666777788878777655543222111111
Q ss_pred CCcccccccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccccHHHHhhhhhHHHHHHH
Q psy5192 181 AGRIHLKPFCTNIHLSDDTMILYRRVLAVVQYAIPLSVISFVYARMALRLWGSKAPGNAQDSRDATLMKNKKKVIKMLVI 260 (324)
Q Consensus 181 ~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~ip~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (324)
-|...... .....+.... .........-.+.+++.+..+++++|+.+.+. ...+++++.+|+|+..+.++..
T Consensus 180 fGAI~I~~---~~~~~~~~~~----~~~l~~s~~~~~~iii~N~lm~~Klr~~k~~l-~~~~~s~~~~KAE~SLT~Tmi~ 251 (307)
T PF10322_consen 180 FGAIIITS---TGSWFNIRNS----IFHLFFSIFWMISIIILNILMFFKLRKLKSSL-SSQRRSKQSRKAERSLTLTMIS 251 (307)
T ss_pred CCEEEEEE---Ecccccchhh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cchhhcccchhhheeHHHHHHH
Confidence 11111100 0011111111 22333344456666777888888888776311 1122333345678888887777
Q ss_pred HHHHHHHhhhhHHHHHHHhhhccCccchhHHHHHHHHHHHhhhccccccceeeeecCcccccC
Q psy5192 261 VVALFAICWLPLQTYNVLQGIFPSINSYHYINIVFFCCDWLAMSNSCYNPFIYGIYNDKERKK 323 (324)
Q Consensus 261 ~~~~f~~~~~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~npiiy~~~~~~~R~~ 323 (324)
+.+-++.--. ..+.....+ ........+--...=+..++-|.++.+.++-|||+
T Consensus 252 mliP~i~n~i----~~i~~~~~~-----~~~~y~~~iRp~~~D~~~~iv~w~FY~THP~Fkkk 305 (307)
T PF10322_consen 252 MLIPYITNGI----ISISFLFFP-----SYSSYILLIRPFGNDCRTCIVPWYFYLTHPIFKKK 305 (307)
T ss_pred HHHHHHHHHH----HHHHHhcCc-----hHHHHHHHHhhhhhccceeEEEEEeeecChhhcCC
Confidence 7766643222 222211111 12222222222344466777889999999999986
No 32
>KOG4193|consensus
Probab=98.11 E-value=2e-05 Score=70.89 Aligned_cols=242 Identities=13% Similarity=0.124 Sum_probs=129.1
Q ss_pred HHHHHHHhhhhheeeeeeeecccccchhhHHHHHHHHHHHHHHHhhhhHHHHHHhhccCCCCc-c-ccccchhhhHHHHH
Q psy5192 40 GTISVLAVVGNFLVIWIVATSRRMQNVTNCFIANLALADIVIGLFAIPFQFQAALLQRWNLPN-F-MCPFCPFVQCLTVT 117 (324)
Q Consensus 40 ~i~~~~gi~~N~~vl~~i~~~~~~~~~~~~~l~~La~~dll~~~~~~~~~~~~~~~~~~~~~~-~-~C~~~~~~~~~~~~ 117 (324)
.+-+.+++++=.+.+++..--|++++..+....+|+++=++.-++ .+.+.|..+. . .|...+++..++..
T Consensus 327 ~VG~~iSlvcL~lti~ty~~~~~l~~~~~~i~~~l~~~L~l~~l~--------fL~~~~~~~~~~~~C~~~a~llhff~L 398 (610)
T KOG4193|consen 327 TVGCIISLVCLLLTIATYLLFRKLQNDRTKIHINLCLCLFLAELL--------FLLGIDRTSTSVVLCIAAAILLHFFFL 398 (610)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHH--------HhcccccccCcccccHHHHHHHHHHHH
Confidence 334444444444445454445555555577778888773222111 1223333322 2 79999999999999
Q ss_pred HHHHHHHHHHHHHHhHhhccCCcCCCccccceeehhHHHHHHHhhhhhheeeceeeeeeecCCCCcccccccccccCCCc
Q psy5192 118 VSVLTLTAIAVDRHRAILNPLSARPSKLRAKICIFGIWTLSSFLAAPMAIATGVTMEEEYTDPAGRIHLKPFCTNIHLSD 197 (324)
Q Consensus 118 ~s~~~~~~is~dRy~~i~~p~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~ 197 (324)
++...+..++++-|..++.-.+.. .+++........|..+.+.............. .+.. ...|.......
T Consensus 399 aaF~Wm~leg~hl~~~~v~vf~~~-~~~~~l~~~~~gwg~Pavvv~Isa~~~~~~~~-~~~~-------~~~CWl~~~~~ 469 (610)
T KOG4193|consen 399 AAFFWMLLEGFHLYLLLVEVFRSR-PRRRKLLYSLYGWGVPAVVVGVSALVDPDLEG-QYGT-------PRVCWLDTQNG 469 (610)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccc-cchHHHHHHHHHhhhhHHHHhheeEEeccCcc-cccc-------CCceEEecCCc
Confidence 999999999999999666544322 33333444357898888776655443222211 1111 12264432222
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhcCCCCCCCCccccHHHHhhhhhHHHHHHHHHHHHHHhhhhHH
Q psy5192 198 DTMILYRRVLAVVQYAIPLSVISFVYA----RMALRLWGSKAPGNAQDSRDATLMKNKKKVIKMLVIVVALFAICWLPLQ 273 (324)
Q Consensus 198 ~~~~~~~~~~~~~~~~ip~~i~~~~~~----~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~P~~ 273 (324)
.... ++.|+.+++.+++ .+.+++.++....+...++. +..+..+..+.+..+.-++|.--.
T Consensus 470 ~~~~----------F~GPv~~ii~~Ni~~Fv~t~~~l~~~~~~~~~~~~~~-----~~~~~~~~~l~L~~lLGlTW~fgi 534 (610)
T KOG4193|consen 470 FIWS----------FLGPVTLIILVNIVMFVVTLKKLLRRLSKLQPIASKL-----ENISLIRSALALLFLLGLTWIFGI 534 (610)
T ss_pred eEEE----------EehHHHHHHHHHHHHHHHHHHHHhhcccccCcchhhH-----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2111 3334444444443 22333333332222221111 112556666777777777776533
Q ss_pred HHHHHhhhccCccchhHHHHHHHHHHHhhhccccccceeeeecCcccccC
Q psy5192 274 TYNVLQGIFPSINSYHYINIVFFCCDWLAMSNSCYNPFIYGIYNDKERKK 323 (324)
Q Consensus 274 i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~npiiy~~~~~~~R~~ 323 (324)
.. +. +. ....+.++..++-.++.+.=.+.|+.++++.|++
T Consensus 535 ~s-~~----~~-----~~~v~~YlFti~NalQG~fIFi~~cll~~kvr~~ 574 (610)
T KOG4193|consen 535 FS-WL----PG-----TSVVFAYLFTIFNALQGVFIFIFHCLLRKKVRKE 574 (610)
T ss_pred HH-Hh----cc-----cchHHHHHHHHHHHhhhhHhhHhhhhhhHHHHHH
Confidence 22 11 10 1223444555666677777788899999988875
No 33
>KOG4564|consensus
Probab=97.83 E-value=0.00021 Score=61.84 Aligned_cols=235 Identities=11% Similarity=0.128 Sum_probs=132.7
Q ss_pred eeeeeecccccchhhHHHHHHHHHHHHHHHhhhhHHHHHHhhcc------------CCCCccccccchhhhHHHHHHHHH
Q psy5192 54 IWIVATSRRMQNVTNCFIANLALADIVIGLFAIPFQFQAALLQR------------WNLPNFMCPFCPFVQCLTVTVSVL 121 (324)
Q Consensus 54 l~~i~~~~~~~~~~~~~l~~La~~dll~~~~~~~~~~~~~~~~~------------~~~~~~~C~~~~~~~~~~~~~s~~ 121 (324)
+.++..-|++|-..|++-.||-++=++-++..+........... -..+...|+...++...+..+..+
T Consensus 166 l~If~~FR~L~CtRn~IH~nLF~SfiLra~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~Ck~~~~~~~Yf~~aNf~ 245 (473)
T KOG4564|consen 166 LIIFLYFRSLHCTRNYIHMNLFASFILRAASVLIKDLVLVVNGEQDASSDTSLHCLISSNPVGCKLLFVFFQYFVLANFF 245 (473)
T ss_pred HHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccccchhHHHHHHHHHHHHHHHHH
Confidence 33444557888889999999999999887766654443222211 024457899988888888888888
Q ss_pred HHHHHHHHHHhHhhccCCcCCCccccceeehhHHHHHHHhhhhhheeeceeeeeeecCCCCcccccccccccCCCchhHH
Q psy5192 122 TLTAIAVDRHRAILNPLSARPSKLRAKICIFGIWTLSSFLAAPMAIATGVTMEEEYTDPAGRIHLKPFCTNIHLSDDTMI 201 (324)
Q Consensus 122 ~~~~is~dRy~~i~~p~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~ 201 (324)
.+.+=.+.-+-.+.--. ..-++..+....+.|.++..+..+..+.... .+ + . .|...........
T Consensus 246 WmlvEGlYLhtLlv~~~--~ser~~~~~y~~iGWG~P~v~v~~Wai~r~~-~~-d---~--------~CW~~~~~~~~~W 310 (473)
T KOG4564|consen 246 WMLVEGLYLHTLLVVAF--FSERRYFWLYLLIGWGVPAVFVVVWAIVRLY-LE-D---T--------GCWDSNDTGHIWW 310 (473)
T ss_pred HHHHHHHHHHHhhheee--ccCccHHHHHHHHhhCCcHHHhhhHHhHhee-ec-c---c--------cccccCCCcceEE
Confidence 88776665555554322 1124455566777898888888776554411 11 1 1 2544333211111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccccHHHHhhhhhHHHHHHHHHHHHHHhhhhHHHHHHHhhh
Q psy5192 202 LYRRVLAVVQYAIPLSVISFVYARMALRLWGSKAPGNAQDSRDATLMKNKKKVIKMLVIVVALFAICWLPLQTYNVLQGI 281 (324)
Q Consensus 202 ~~~~~~~~~~~~ip~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~P~~i~~~~~~~ 281 (324)
+ .-.-..+++++-.+..+.|+|.+-++-+..+.... +..+|++|..++++=+|-+.++.+. +
T Consensus 311 I-----i~gPi~~ai~vNf~flinIvrILv~KLr~~~~~~~------~~y~K~vKaTLvLIPLfGI~~ilf~-------~ 372 (473)
T KOG4564|consen 311 I-----IRGPILLAILVNFIFLINIVRILVTKLRASNASET------DQYRKLVKATLVLIPLFGIHYILFA-------F 372 (473)
T ss_pred E-----EeccHHHHHHHHHHHHHHHHHHHHHHhcCccccch------HHHHHHHHHHHHHHHHcCCeeEEEE-------e
Confidence 0 01111233444444455555555443333222222 1256666666665544444333211 1
Q ss_pred ccCccchhHHHHHHHHHHHhhhccccccceeeeecCcccccC
Q psy5192 282 FPSINSYHYINIVFFCCDWLAMSNSCYNPFIYGIYNDKERKK 323 (324)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~l~~~~~~~npiiy~~~~~~~R~~ 323 (324)
.+ +.........++...+...+..+=.++|++.|+|.|.+
T Consensus 373 ~P--~~~~~~~v~~~~~~~L~SfQGf~VAvlYCFlN~EVq~e 412 (473)
T KOG4564|consen 373 RP--DEDTLREVYLYFELFLGSFQGFFVAVLYCFLNGEVQAE 412 (473)
T ss_pred cC--chHHHHHHHHHHHHHHHhccchheehheeecCHHHHHH
Confidence 11 11122334445666788899999999999999998765
No 34
>PF01534 Frizzled: Frizzled/Smoothened family membrane region; InterPro: IPR000539 The frizzled (fz) locus of Drosophila coordinates the cytoskeletons of epidermal cells, producing a parallel array of cuticular hairs and bristles [, ]. In fz mutants, the orientation of individual hairs with respect both to their neighbours and to the organism as a whole is altered. In the wild-type wing, all hairs point towards the distal tip []. In the developing wing, fz has 2 functions: it is required for the proximal-distal transmission of an intracellular polarity signal; and it is required for cells to respond to the polarity signal. Fz produces an mRNA that encodes an integral membrane protein with 7 putative transmembrane (TM) domains. This protein should contain both extracellular and cytoplasmic domains, which could function in the transmission and interpretation of polarity information []. This signature is usually found downstream of the Fz domain (IPR000024 from INTERPRO); GO: 0007166 cell surface receptor linked signaling pathway, 0016020 membrane
Probab=97.75 E-value=0.0045 Score=51.77 Aligned_cols=137 Identities=10% Similarity=0.109 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHHhhhhheeeeeeeecccccchhhHHHHHHHHHHHHHHHhhhhHHHHH--Hhh-c----------cCCCC
Q psy5192 35 LSVFYGTISVLAVVGNFLVIWIVATSRRMQNVTNCFIANLALADIVIGLFAIPFQFQA--ALL-Q----------RWNLP 101 (324)
Q Consensus 35 ~~~~~~i~~~~gi~~N~~vl~~i~~~~~~~~~~~~~l~~La~~dll~~~~~~~~~~~~--~~~-~----------~~~~~ 101 (324)
......+.+.+..+.+++.+..+..++++-+-+...+.-++++-.+.++..+.-.... ... + ....+
T Consensus 11 ~~~wi~~~s~ic~~~t~ftv~Tf~id~~rf~yPerpi~fl~~Cy~~~s~~~l~~~~~g~~~i~C~~~~~~~~~~~~~~~~ 90 (328)
T PF01534_consen 11 ARIWIGVWSVICFISTLFTVLTFLIDRSRFRYPERPIIFLSFCYFIVSLGYLIRFILGRESIACRSQDGTERILVQDGLE 90 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccCCccchhhHHHHHHHHHHHHHHHHHhccCCCcCCCcCCCCceeEeecCCC
Confidence 3444555566666667776666555444323334455556666665544333322210 000 0 01224
Q ss_pred ccccccchhhhHHHHHHHHHHHHHHHHHHHhHhhccCCcCCCccccceeehhHHHHHHHhhhhhheeece
Q psy5192 102 NFMCPFCPFVQCLTVTVSVLTLTAIAVDRHRAILNPLSARPSKLRAKICIFGIWTLSSFLAAPMAIATGV 171 (324)
Q Consensus 102 ~~~C~~~~~~~~~~~~~s~~~~~~is~dRy~~i~~p~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 171 (324)
+..|.+...+.+++.+++..--+.+++.-|++...........++....-.++|.++.+.++..+....+
T Consensus 91 ~~~C~~~F~l~Yyf~mAa~~WWviLt~~W~lsa~~kw~~e~i~~~s~yfH~~aW~iP~~~ti~vL~~~~V 160 (328)
T PF01534_consen 91 NSSCTVVFLLLYYFGMAASLWWVILTLTWFLSAGLKWGSEAIEKKSSYFHLVAWGIPAVLTIAVLALRKV 160 (328)
T ss_pred CCchhhHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccCcchhhhhcchhhhHHhhhhHHHHHHHHHhccc
Confidence 5789999999999999999899999999999987665544455666666778999999988877665443
No 35
>PF03125 Sre: C. elegans Sre G protein-coupled chemoreceptor; InterPro: IPR004151 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class e (Sre) from the Sra superfamily []. ; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane
Probab=97.65 E-value=0.0057 Score=52.59 Aligned_cols=117 Identities=17% Similarity=0.202 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhheeeeeeeecccccchhhHHHHHHHHHHH---HHHHhhhhHHHHHHhhcc--------C
Q psy5192 30 SIIILLSVFYGTISVLAVVGNFLVIWIVATSRRMQNVTNCFIANLALADI---VIGLFAIPFQFQAALLQR--------W 98 (324)
Q Consensus 30 ~~~~~~~~~~~i~~~~gi~~N~~vl~~i~~~~~~~~~~~~~l~~La~~dl---l~~~~~~~~~~~~~~~~~--------~ 98 (324)
.......++..++.+++..-....+.++.+.|..+...+.+....-..-+ +.=+...|........++ |
T Consensus 24 ~~~~~~~i~e~~l~~~~~~~~~~~~~i~~~~r~FH~N~~~l~~~~~~~w~e~~i~k~~i~~y~~~~~~~~~~~~~~~~~~ 103 (365)
T PF03125_consen 24 WFYIILLIFELILYIICFYFTFKSCYIILKIRQFHRNLNILFIFILLQWFELIIGKILIIPYQIGIITLGDISIGTYIQW 103 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhceeeecCccchhhhhh
Confidence 45555666666666666666666666777777777656555554433332 222233333322111010 1
Q ss_pred -CCC-----------ccc-cccchhhhHHHHHHHHHHHHHHHHHHHhHhhccCCcCCCccc
Q psy5192 99 -NLP-----------NFM-CPFCPFVQCLTVTVSVLTLTAIAVDRHRAILNPLSARPSKLR 146 (324)
Q Consensus 99 -~~~-----------~~~-C~~~~~~~~~~~~~s~~~~~~is~dRy~~i~~p~~~~~~~~~ 146 (324)
..+ +.. -.+.+++...........+.++++||..|-..-..|.+++|.
T Consensus 104 ~t~~~~~m~~v~~~~~~~~l~~~~~l~~~y~~~~~~~~~~~~iER~~AT~~i~dYEk~~R~ 164 (365)
T PF03125_consen 104 WTDDPSEMIPVNSFNDSWPLFIGGFLRWHYMFSAIFCLLAIVIERCFATYFIKDYEKKSRR 164 (365)
T ss_pred hccCcccceeeeccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc
Confidence 000 011 112244444444555788999999999999998888876543
No 36
>PF02076 STE3: Pheromone A receptor; InterPro: IPR001499 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). Little is known about the structure and function of the mating factor receptors, STE2 and STE3. It is believed, however, that they are integral membrane proteins that may be involved in the response to mating factors on the cell membrane [, , ]. The amino acid sequences of both receptors contain high proportions of hydrophobic residues grouped into 7 domains, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins. However, while a similar 3D framework has been proposed to account for this, there is no significant sequence similarity either between STE2 and STE3, or between these and the rhodopsin-type family: the receptors thus bear their own unique '7TM' signatures. The STE3 gene of Saccharomyces cerevisiae (Baker's yeast) is the cell-surface receptor that binds the 13-residue lipopeptide a-factor. Several related fungal pheromone receptor sequences are known: these include pheromone B alpha 1 and B alpha 3, and pheromone B beta 1 receptors from Schizophyllum commune; pheromone receptor 1 from Ustilago hordei; and pheromone receptors 1 and 2 from Ustilago maydis. Members of the family share about 20% sequence identity.; GO: 0004932 mating-type factor pheromone receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane
Probab=97.34 E-value=0.011 Score=48.47 Aligned_cols=213 Identities=14% Similarity=0.083 Sum_probs=103.5
Q ss_pred HHHHhhhhheeeeeeeecccccchhhHHHHHHHHHHHHHHHhhhhHHHHHHhhccCCCCccccccchhhhHHHHHHHHHH
Q psy5192 43 SVLAVVGNFLVIWIVATSRRMQNVTNCFIANLALADIVIGLFAIPFQFQAALLQRWNLPNFMCPFCPFVQCLTVTVSVLT 122 (324)
Q Consensus 43 ~~~gi~~N~~vl~~i~~~~~~~~~~~~~l~~La~~dll~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~ 122 (324)
+++|.+..+.-+...+|.+ ..++-.++.-+.++++...+-.+.+.- +....-..+|.+..-+.......-...
T Consensus 4 s~i~~~l~i~Pl~wH~ra~--N~~~~~li~Wl~l~nl~~~INaiIW~~-----n~~~~~~~wCDI~~kl~~~~~~g~~~a 76 (283)
T PF02076_consen 4 SFIAFVLLIVPLPWHWRAR--NIGTCSLIFWLFLSNLIYFINAIIWRD-----NDINWWPVWCDISTKLIIGSSVGIPAA 76 (283)
T ss_pred HHHHHHHHHHHHHHHHHcC--cHHHHHHHHHHHHHHHHHHHhhhhcCC-----CCCccCceeeeehHHHHHHHHHHHHHH
Confidence 3444444444443333333 466778888888888877553332211 111122389999988777777665444
Q ss_pred HHHHHHHHHhHhhccCCcC----CCccccceeehhHHHHHHHhhhhhheeeceeeeeeecCCCCcccccccccccCCCch
Q psy5192 123 LTAIAVDRHRAILNPLSAR----PSKLRAKICIFGIWTLSSFLAAPMAIATGVTMEEEYTDPAGRIHLKPFCTNIHLSDD 198 (324)
Q Consensus 123 ~~~is~dRy~~i~~p~~~~----~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~ 198 (324)
..+|+-.=| .|..+.+.. .++|+...=..+++.++++......+..+....-.. ...|........
T Consensus 77 ~lcI~r~L~-~I~s~r~~~~~~~~~rr~~~~d~~i~~g~Pil~m~l~yivQ~~Rf~I~e---------~~GC~~~~~~s~ 146 (283)
T PF02076_consen 77 SLCIMRRLY-RIASARAVSLSRSEKRRRIIIDLLICFGIPILQMALHYIVQGHRFDIVE---------DVGCYPAIYPSW 146 (283)
T ss_pred HHHHHHHHH-HHhccccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeEec---------ccCCccCCCCCH
Confidence 444444333 244443222 145555566777788887776665554433322111 122766444443
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-CCCCccccHHHHhhhhhHHHHHHHHHHHHHHhhhhHHHHHH
Q psy5192 199 TMILYRRVLAVVQYAIPLSVISFVYARMALRLWGSKAP-GNAQDSRDATLMKNKKKVIKMLVIVVALFAICWLPLQTYNV 277 (324)
Q Consensus 199 ~~~~~~~~~~~~~~~ip~~i~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~P~~i~~~ 277 (324)
....... +-..++.++...++- ..+++..|++++ ++..+++++. -+.+|..| +..+.++.+++.+|..++.+
T Consensus 147 ~~~~l~~---iwp~i~~lia~vYa~-lt~~~f~~rr~~f~~~l~~s~s~--l~~~Rf~R-L~~la~~~i~~~~P~~i~~~ 219 (283)
T PF02076_consen 147 PTIFLFI---IWPPIFSLIAAVYAI-LTLRRFIRRRKQFRDILSSSNSG--LNTSRFFR-LLALALVIILIYLPLSIYYL 219 (283)
T ss_pred HHHHHHH---HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCCc--ccHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 2222111 111111222222222 233333333222 2111111110 11234444 66777788889999988888
Q ss_pred Hh
Q psy5192 278 LQ 279 (324)
Q Consensus 278 ~~ 279 (324)
+.
T Consensus 220 v~ 221 (283)
T PF02076_consen 220 VS 221 (283)
T ss_pred HH
Confidence 73
No 37
>PF02175 7TM_GPCR_Srb: Serpentine type 7TM GPCR chemoreceptor Srb; InterPro: IPR002184 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class b (Srb) from the Sra superfamily []. Srb receptors contain 6-8 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane
Probab=96.36 E-value=0.15 Score=40.01 Aligned_cols=47 Identities=9% Similarity=0.125 Sum_probs=38.6
Q ss_pred CCccccccchhhhHHHHHHHHHHHHHHHHHHHhHhhccCCcCCCccc
Q psy5192 100 LPNFMCPFCPFVQCLTVTVSVLTLTAIAVDRHRAILNPLSARPSKLR 146 (324)
Q Consensus 100 ~~~~~C~~~~~~~~~~~~~s~~~~~~is~dRy~~i~~p~~~~~~~~~ 146 (324)
.+...++.......+....+++.-..+++||++|.....+|.+++..
T Consensus 80 I~~~~~K~~h~~~~flmT~~ml~PigftIERfiAl~~A~~YE~~r~~ 126 (236)
T PF02175_consen 80 IDPTLFKYGHLTGLFLMTIPMLFPIGFTIERFIALKMAEKYENTRTL 126 (236)
T ss_pred EchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccCcee
Confidence 34466777778888899999999999999999999998888875543
No 38
>PF11970 Git3_C: G protein-coupled glucose receptor regulating Gpa2 C-term; InterPro: IPR022596 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor. Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This family is the conserved C-terminal domain of the member proteins.
Probab=96.31 E-value=0.024 Score=36.11 Aligned_cols=71 Identities=13% Similarity=0.291 Sum_probs=51.1
Q ss_pred HhhhhhHHHHHHHHHHHHHHhhh-hHHHHHHHhhhccCccchhHHHHHHHHHHHhhhccccccceeeeecCcccc
Q psy5192 248 MKNKKKVIKMLVIVVALFAICWL-PLQTYNVLQGIFPSINSYHYINIVFFCCDWLAMSNSCYNPFIYGIYNDKER 321 (324)
Q Consensus 248 ~~~~~~~~~~~~~~~~~f~~~~~-P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~npiiy~~~~~~~R 321 (324)
+++-+|.+|.+++--++|+++|+ |... .......+. ......++..++..+..+|+.+|-++|.++.+..|
T Consensus 4 r~~i~r~lr~mfiYP~~Yi~lwlfP~~~-~~~~~~~~~--~~~p~~~l~~i~~~~~~~~G~VD~lvf~~~erpw~ 75 (76)
T PF11970_consen 4 RKRIRRQLRSMFIYPLVYIVLWLFPFAA-HRMQYMYEI--GHGPSFWLFCIAGFMQPSQGFVDCLVFTLRERPWR 75 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhcc--CCCCchHHHHHHHHHHHccCHHHhhheeeecccCC
Confidence 45567888999999999999999 7654 343333211 12223456677778888999999999999887665
No 39
>PF03383 Serpentine_r_xa: Caenorhabditis serpentine receptor-like protein, class xa; InterPro: IPR005047 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class xa (Srxa), from the Str superfamily [].
Probab=94.12 E-value=0.019 Score=41.89 Aligned_cols=62 Identities=13% Similarity=-0.022 Sum_probs=48.1
Q ss_pred cccchhhhHHHHHHHHHHHHHHHHHHHhHhhccCCc--CCCccccceeehhHHHHHHHhhhhhh
Q psy5192 105 CPFCPFVQCLTVTVSVLTLTAIAVDRHRAILNPLSA--RPSKLRAKICIFGIWTLSSFLAAPMA 166 (324)
Q Consensus 105 C~~~~~~~~~~~~~s~~~~~~is~dRy~~i~~p~~~--~~~~~~~~~~~~~~w~~~~~~~~~~~ 166 (324)
-+-......++.....+...+|+++|-..+.+|.+. .-+.+|.+..+....++.+..-+.+.
T Consensus 44 G~~~TL~~tf~Yl~plfltvLMti~Ri~iV~~P~~~~~~Fs~~kl~~YC~~i~i~~~i~LlIPy 107 (153)
T PF03383_consen 44 GKEVTLFGTFSYLHPLFLTVLMTINRIYIVLFPFGSEIWFSDKKLWIYCGIIAILSFISLLIPY 107 (153)
T ss_pred CCEEeeeehHHHHHHHHHHHHHHHhheEEEEecCCCccccccchhHHHHHHHHHHHHHHHHhhc
Confidence 344466778888899999999999999999999987 34888888888776666666544443
No 40
>PF06681 DUF1182: Protein of unknown function (DUF1182); InterPro: IPR010601 This family consists of several hypothetical proteins of around 360 residues in length and seems to be specific to Caenorhabditis elegans. The function of this family is unknown.
Probab=90.87 E-value=0.42 Score=36.61 Aligned_cols=97 Identities=10% Similarity=0.139 Sum_probs=54.5
Q ss_pred HHHHHHHHHhhhhheeeeeeeecccc--cchhhHHHHHHHHHHHHHHHhhhhHHHHHHhh-------ccCCCCccccccc
Q psy5192 38 FYGTISVLAVVGNFLVIWIVATSRRM--QNVTNCFIANLALADIVIGLFAIPFQFQAALL-------QRWNLPNFMCPFC 108 (324)
Q Consensus 38 ~~~i~~~~gi~~N~~vl~~i~~~~~~--~~~~~~~l~~La~~dll~~~~~~~~~~~~~~~-------~~~~~~~~~C~~~ 108 (324)
.-.++...+.+.+.+....+.++|++ +-.+.+.. +.+..-++.+|..+..... .+-..+-..|.+.
T Consensus 46 ~e~~v~~~s~~~s~~L~ifi~~rk~l~~~~ksTIvF-----aT~g~fvLtlP~~lf~~wl~~~l~~~~ep~ytI~vCSfl 120 (226)
T PF06681_consen 46 VEFIVNTVSWLFSYFLCIFIWRRKNLIRSYKSTIVF-----ATFGQFVLTLPLYLFQTWLVFFLWFGHEPQYTIFVCSFL 120 (226)
T ss_pred HHHHHHhHHHHHHHHHHHHHhhhHHHHHhhcCeEEE-----eeHHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEeehHH
Confidence 34556667777777777666666663 21111211 1112223344443332211 1122344678887
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhHhhccCC
Q psy5192 109 PFVQCLTVTVSVLTLTAIAVDRHRAILNPLS 139 (324)
Q Consensus 109 ~~~~~~~~~~s~~~~~~is~dRy~~i~~p~~ 139 (324)
.-....+..+.....+++|++||..|++-.|
T Consensus 121 k~f~S~t~s~~~vip~aVAIyRy~~VV~k~r 151 (226)
T PF06681_consen 121 KNFTSSTTSCAQVIPVAVAIYRYLIVVLKKR 151 (226)
T ss_pred HhHHHHHhhhhccchhhhhhhhhheeeeccc
Confidence 7666666666666677899999999987543
No 41
>PF06454 DUF1084: Protein of unknown function (DUF1084); InterPro: IPR009457 This entry consists of several hypothetical plant specific proteins of unknown function.
Probab=85.88 E-value=19 Score=29.87 Aligned_cols=53 Identities=17% Similarity=0.283 Sum_probs=27.7
Q ss_pred chHHHHHHHHHHHHHHHHHhhhhheeeeeeeecccc-cchhhHHHHHHHHHHHHHHH
Q psy5192 28 PTSIIILLSVFYGTISVLAVVGNFLVIWIVATSRRM-QNVTNCFIANLALADIVIGL 83 (324)
Q Consensus 28 ~~~~~~~~~~~~~i~~~~gi~~N~~vl~~i~~~~~~-~~~~~~~l~~La~~dll~~~ 83 (324)
.+.....++.++.++++.|++= ++....|.++. .+...++..-+.++.+.-++
T Consensus 24 ~~~~~~~La~iy~~v~~~aliQ---l~ri~~r~~~~~~t~qkvf~ll~~l~~~~R~i 77 (281)
T PF06454_consen 24 QDGLFYALAAIYLLVALVALIQ---LIRIQYRVPKYGWTTQKVFHLLIFLANLVRAI 77 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HhheeEeccccCccHHHHHHHHHHHHHHHHeE
Confidence 3445566667777777666655 22222243332 35555555555566655544
No 42
>KOG4289|consensus
Probab=81.80 E-value=6.1 Score=39.76 Aligned_cols=59 Identities=10% Similarity=0.192 Sum_probs=40.2
Q ss_pred CccccccchhhhHHHHHHHHHHHHHHHHHHHhHhhccCCcCCCccccceeehhHHHHHHHhhh
Q psy5192 101 PNFMCPFCPFVQCLTVTVSVLTLTAIAVDRHRAILNPLSARPSKLRAKICIFGIWTLSSFLAA 163 (324)
Q Consensus 101 ~~~~C~~~~~~~~~~~~~s~~~~~~is~dRy~~i~~p~~~~~~~~~~~~~~~~~w~~~~~~~~ 163 (324)
.+..|.+...+..+...+....+.+-+++-|-...--. ...-.+...++.|.+..+++.
T Consensus 2222 nq~~CtvvailLhf~~~stFaWlfl~gLhlYRml~e~v----~tg~mrfy~~vGwgvPa~itg 2280 (2531)
T KOG4289|consen 2222 NQFYCTVVAILLHFTYLSTFAWLFLEGLHLYRMLTENV----DTGPMRFYYLVGWGVPALITG 2280 (2531)
T ss_pred CchhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccC----CCCceeEEEEeecchhhheee
Confidence 67899999999999999998888888888777776521 111222233446776665543
No 43
>PF10325 7TM_GPCR_Srz: Serpentine type 7TM GPCR chemoreceptor Srz; InterPro: IPR018817 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class z (Srz), a solo family amongst the superfamilies of chemoreceptors [, ]. The genes encoding Srz appear to be under strong adaptive evolutionary pressure [].
Probab=70.02 E-value=59 Score=26.56 Aligned_cols=29 Identities=24% Similarity=0.345 Sum_probs=22.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhHhhccC
Q psy5192 110 FVQCLTVTVSVLTLTAIAVDRHRAILNPL 138 (324)
Q Consensus 110 ~~~~~~~~~s~~~~~~is~dRy~~i~~p~ 138 (324)
........+--..+..+|++|++--..|.
T Consensus 87 ~~l~i~~~v~~lllsLLAIqRFllyFfP~ 115 (267)
T PF10325_consen 87 FILYIITQVFHLLLSLLAIQRFLLYFFPS 115 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 33444445556778999999999999997
No 44
>PF00003 7tm_3: 7 transmembrane sweet-taste receptor of 3 GCPR; InterPro: IPR017978 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). GPCR family 3 receptors (also known as family C) are structurally similar to other GPCRs, but do not show any significant sequence similarity and thus represent a distinct group. Structurally they are composed of four elements; an N-terminal signal sequence; a large hydrophilic extracellular agonist-binding region containing several conserved cysteine residues which could be involved in disulphide bonds; a shorter region containing seven transmembrane domains; and a C-terminal cytoplasmic domain of variable length []. Family 3 members include the metabotropic glutamate receptors, the extracellular calcium-sensing receptors, the gamma-amino-butyric acid (GABA) type B receptors, and the vomeronasal type-2 receptors [, , , ]. As these receptors regulate many important physiological processes they are potentially promising targets for drug development. This entry represents the C-terminal region of family 3 GPCR receptor proteins, which contains the seven transmembrane region. The seven TM regions assemble in such a way as to produce a docking pocket into which such molecules as cyclamate and lactisole have been found to bind and consequently confer the taste of sweetness []. ; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane
Probab=62.86 E-value=21 Score=28.50 Aligned_cols=30 Identities=17% Similarity=0.243 Sum_probs=19.2
Q ss_pred CCCccccccchhhhHHHHHHHHHHHHHHHH
Q psy5192 99 NLPNFMCPFCPFVQCLTVTVSVLTLTAIAV 128 (324)
Q Consensus 99 ~~~~~~C~~~~~~~~~~~~~s~~~~~~is~ 128 (324)
+.++..|....+....+.......+.+=+.
T Consensus 50 ~~s~~~C~~r~~~~~l~f~l~~~~ll~K~~ 79 (238)
T PF00003_consen 50 PPSDILCTLRRWLFSLGFTLIFSALLAKTW 79 (238)
T ss_pred CcCCcEEEEeeeeeeeehHhhhhHHHHhhh
Confidence 345678999888777666655555544443
No 45
>PF15086 UPF0542: Uncharacterised protein family UPF0542
Probab=44.09 E-value=25 Score=21.92 Aligned_cols=29 Identities=21% Similarity=0.240 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHhcCC
Q psy5192 206 VLAVVQYAIPLSVIS-FVYARMALRLWGSK 234 (324)
Q Consensus 206 ~~~~~~~~ip~~i~~-~~~~~i~~~~~~~~ 234 (324)
+..++..+.|+.++. ++..++.+.+.++.
T Consensus 23 l~~vll~LtPlfiisa~lSwkLaK~ie~~e 52 (74)
T PF15086_consen 23 LTTVLLILTPLFIISAVLSWKLAKAIEKEE 52 (74)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 455566667776554 45556666665443
No 46
>PF06695 Sm_multidrug_ex: Putative small multi-drug export protein; InterPro: IPR009577 This family contains a small number of putative small multi-drug export proteins.
Probab=43.38 E-value=98 Score=21.85 Aligned_cols=61 Identities=20% Similarity=0.158 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccccHHHHhhhhhHHHHHHHHHHHHH
Q psy5192 206 VLAVVQYAIPLSVISFVYARMALRLWGSKAPGNAQDSRDATLMKNKKKVIKMLVIVVALFA 266 (324)
Q Consensus 206 ~~~~~~~~ip~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 266 (324)
...++...+|...+....-++.+.+++.+.-++-.+.-.++.++++++.-|--..-...|+
T Consensus 21 ~~~~lGN~l~vp~i~~~~~~i~~~l~~~~~~~~~~~~~~~k~~~~~~~i~kyg~~GL~lFV 81 (121)
T PF06695_consen 21 LLAFLGNILPVPFILLFLDKILKWLKRKPWLKKFYEWLEKKAEKKSKKIEKYGFWGLALFV 81 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 5566777888888888888888777664433322222222223344444444333333344
No 47
>PF06814 Lung_7-TM_R: Lung seven transmembrane receptor; InterPro: IPR009637 This family represents a conserved region with eukaryotic lung seven transmembrane receptors and related proteins.; GO: 0016021 integral to membrane
Probab=43.28 E-value=2e+02 Score=24.06 Aligned_cols=21 Identities=19% Similarity=0.235 Sum_probs=11.6
Q ss_pred HHHHH-HHHHHHHHHHHHHHhc
Q psy5192 212 YAIPL-SVISFVYARMALRLWG 232 (324)
Q Consensus 212 ~~ip~-~i~~~~~~~i~~~~~~ 232 (324)
..+|+ ....+.+..+++.+++
T Consensus 190 ~~~~l~~~~~~~~~wi~~sL~~ 211 (295)
T PF06814_consen 190 FLLPLCILDLFFIVWIFRSLSK 211 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 34444 3345566666666655
No 48
>PF05296 TAS2R: Mammalian taste receptor protein (TAS2R); InterPro: IPR007960 This family consists of several forms of mammalian taste receptor proteins (TAS2Rs). TAS2Rs are G protein-coupled receptors expressed in subsets of taste receptor cells of the tongue and palate epithelia and are organised in the genome in clusters. The proteins are genetically linked to loci that influence bitter perception in mice and humans [].; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0050909 sensory perception of taste, 0016021 integral to membrane
Probab=40.51 E-value=2.2e+02 Score=23.91 Aligned_cols=56 Identities=7% Similarity=0.064 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCCCccccHHHHhhhhhHHHHHHHHHHHHHH
Q psy5192 212 YAIPLSVISFVYARMALRLWGSKAPGNAQDSRDATLMKNKKKVIKMLVIVVALFAI 267 (324)
Q Consensus 212 ~~ip~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 267 (324)
+.+-++.....-....|+.||.++.....+..+.+...+-.|......+.-+.|.+
T Consensus 193 f~i~l~s~~lli~SL~rH~r~M~~n~~g~~~ps~~aH~~a~k~~~sfl~ly~~~~~ 248 (303)
T PF05296_consen 193 FLIFLVSSILLIFSLWRHMRRMQKNATGFRDPSTEAHIRAIKTMISFLILYIIYFL 248 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334445566666665555544444444445555665565555444443
No 49
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=39.05 E-value=69 Score=19.32 Aligned_cols=16 Identities=19% Similarity=0.281 Sum_probs=7.0
Q ss_pred hhHHHHHHHHHHHHHH
Q psy5192 252 KKVIKMLVIVVALFAI 267 (324)
Q Consensus 252 ~~~~~~~~~~~~~f~~ 267 (324)
+|...++..+++++++
T Consensus 36 ~~~~~i~~~~~i~~l~ 51 (59)
T PF09889_consen 36 RKTQYIFFGIFILFLA 51 (59)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444443
No 50
>PF12963 DUF3852: Protein of unknown function (DUF3852); InterPro: IPR024330 This entry represents a family of uncharacterised bacterial proteins found by clustering human gut metagenomic sequences [].
Probab=37.64 E-value=1.3e+02 Score=20.44 Aligned_cols=77 Identities=13% Similarity=0.147 Sum_probs=37.4
Q ss_pred cccceeehhHHHHHHHhhhhhheeeceeeeeeecCCCCcccccccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5192 145 LRAKICIFGIWTLSSFLAAPMAIATGVTMEEEYTDPAGRIHLKPFCTNIHLSDDTMILYRRVLAVVQYAIPLSVISFVYA 224 (324)
Q Consensus 145 ~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~ip~~i~~~~~~ 224 (324)
+|.......+++.+.+++.|.+........+- ....+.+...++-......++-.+-+++.+++..
T Consensus 3 kk~l~~~~~~l~~~~~f~~~a~Aa~~gdVagA--------------Ie~TW~~A~~QIKtVVN~VVFPaidlILav~ffv 68 (111)
T PF12963_consen 3 KKILAVLCVVLLLACLFSTTAFAAGSGDVAGA--------------IESTWKDASGQIKTVVNNVVFPAIDLILAVFFFV 68 (111)
T ss_pred hhHHHHHHHHHHHHHHHhhhHHhcCCCcHHHH--------------HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34444455566777777766654321111000 0011222233333334445555667777777777
Q ss_pred HHHHHHhcCCC
Q psy5192 225 RMALRLWGSKA 235 (324)
Q Consensus 225 ~i~~~~~~~~~ 235 (324)
++-......|+
T Consensus 69 Kl~~ayfdYrK 79 (111)
T PF12963_consen 69 KLGMAYFDYRK 79 (111)
T ss_pred HHHHHHHHHHh
Confidence 77655544443
No 51
>PF13853 7tm_4: Olfactory receptor
Probab=35.44 E-value=1.1 Score=32.84 Aligned_cols=55 Identities=16% Similarity=0.247 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccccHHHHhhhhhHHHHHHHHHHHHHHhhhhH
Q psy5192 206 VLAVVQYAIPLSVISFVYARMALRLWGSKAPGNAQDSRDATLMKNKKKVIKMLVIVVALFAICWLPL 272 (324)
Q Consensus 206 ~~~~~~~~ip~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~P~ 272 (324)
.........|+.++.++|.+|.+.+.|.+..+ .++|+..+......+..+.+.|.
T Consensus 60 ~~~~~~~~~~~~~Il~SY~~Il~avlki~S~~------------~r~KAfsTC~sHL~vv~lfy~~~ 114 (144)
T PF13853_consen 60 VVAIFILLGPLLLILFSYIRILRAVLKIPSAE------------GRSKAFSTCSSHLTVVSLFYGTV 114 (144)
T ss_pred cccceeEEEEeeccccceeEEEehhhcccccc------------cccccccccccCceEEEEeeeee
Confidence 44455567899999999999999887765432 24566666666555555555553
No 52
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=29.61 E-value=1.6e+02 Score=18.85 Aligned_cols=15 Identities=33% Similarity=0.525 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHH
Q psy5192 212 YAIPLSVISFVYARM 226 (324)
Q Consensus 212 ~~ip~~i~~~~~~~i 226 (324)
.++|+++.+++-.-+
T Consensus 6 l~~Pliif~ifVap~ 20 (75)
T TIGR02976 6 LAIPLIIFVIFVAPL 20 (75)
T ss_pred HHHHHHHHHHHHHHH
Confidence 445666555444443
No 53
>PF15050 SCIMP: SCIMP protein
Probab=28.72 E-value=2.1e+02 Score=20.09 Aligned_cols=29 Identities=21% Similarity=0.256 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy5192 206 VLAVVQYAIPLSVISFVYARMALRLWGSK 234 (324)
Q Consensus 206 ~~~~~~~~ip~~i~~~~~~~i~~~~~~~~ 234 (324)
++.+...++.+.+-++.|..-.+.+|+.+
T Consensus 11 iLAVaII~vS~~lglIlyCvcR~~lRqGk 39 (133)
T PF15050_consen 11 ILAVAIILVSVVLGLILYCVCRWQLRQGK 39 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 44444444444444444444444444433
No 54
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=26.69 E-value=2.3e+02 Score=19.88 Aligned_cols=27 Identities=19% Similarity=0.225 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhheeeee
Q psy5192 30 SIIILLSVFYGTISVLAVVGNFLVIWI 56 (324)
Q Consensus 30 ~~~~~~~~~~~i~~~~gi~~N~~vl~~ 56 (324)
+-.+.+++++.+++.+.++...++..-
T Consensus 41 wK~I~la~~Lli~G~~li~~g~l~~~~ 67 (115)
T PF05915_consen 41 WKSIALAVFLLIFGTVLIIIGLLLFFG 67 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455666666666666666666655544
No 55
>KOG1056|consensus
Probab=26.30 E-value=6.5e+02 Score=24.99 Aligned_cols=46 Identities=9% Similarity=0.189 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHhhhhheeeeeeeecccc-------cchhhHHHHHHHHH
Q psy5192 32 IILLSVFYGTISVLAVVGNFLVIWIVATSRRM-------QNVTNCFIANLALA 77 (324)
Q Consensus 32 ~~~~~~~~~i~~~~gi~~N~~vl~~i~~~~~~-------~~~~~~~l~~La~~ 77 (324)
+-..++...+++++|++.-..++.++.+..+. |...++++.++.++
T Consensus 558 ~~~~~i~~l~lA~LGii~tl~vlv~fvr~~~TpvVkasgreLsyiLL~gi~l~ 610 (878)
T KOG1056|consen 558 RSPWSIAPLLLAILGIIATLFVLVLFVRYNDTPVVKASGRELSYILLLGIFLC 610 (878)
T ss_pred cccccHHHHHHHHHHHHHHHHhheeEEEecCCceEEecCcEehHHHHHHHHHH
Confidence 33455778888999999999998888775543 34556666665543
No 56
>PF00001 7tm_1: 7 transmembrane receptor (rhodopsin family) Rhodopsin-like GPCR superfamily signature 5-hydroxytryptamine 7 receptor signature bradykinin receptor signature gastrin receptor signature melatonin receptor signature olfactory receptor signature; InterPro: IPR000276 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ].; GO: 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 2KI9_A 3QAK_A 2YDV_A 3VGA_A 3PWH_A 3RFM_A 3EML_A 3VG9_A 3REY_A 3UZA_A ....
Probab=24.69 E-value=3.4e+02 Score=21.12 Aligned_cols=82 Identities=13% Similarity=0.165 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccccHHHHhhhhhHHHHHHHHHHHHHHhhhhHHHHHHHhh
Q psy5192 201 ILYRRVLAVVQYAIPLSVISFVYARMALRLWGSKAPGNAQDSRDATLMKNKKKVIKMLVIVVALFAICWLPLQTYNVLQG 280 (324)
Q Consensus 201 ~~~~~~~~~~~~~ip~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~P~~i~~~~~~ 280 (324)
.........+...+........+..+.+..++.+...+...+++.+++++..|....+....++..+-+.-..+......
T Consensus 150 ~~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~P~~i~~~~~~~~~ 229 (257)
T PF00001_consen 150 IYFFIVFFILPLIIILICYIRILRKLRRQRKRIKSQSSSSSRRRSRRERRAARTLLIIVLVFLLCWLPYFILSLLSVFSP 229 (257)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHCTCCHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred ccccccccccceeeeeeecccccccccccccccccccccccccccccccccccccccccccccccCCceeHHHHHHHHcC
Confidence 33444555555666666677777777777776665554555555555555666665555555555555555555554444
Q ss_pred hc
Q psy5192 281 IF 282 (324)
Q Consensus 281 ~~ 282 (324)
..
T Consensus 230 ~~ 231 (257)
T PF00001_consen 230 SS 231 (257)
T ss_dssp TS
T ss_pred cc
Confidence 33
No 57
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=23.17 E-value=7.3e+02 Score=24.48 Aligned_cols=73 Identities=11% Similarity=0.162 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccccHHHHhhhhhHHHHHHHHHHHHHHhhhhHHHHHHH
Q psy5192 202 LYRRVLAVVQYAIPLSVISFVYARMALRLWGSKAPGNAQDSRDATLMKNKKKVIKMLVIVVALFAICWLPLQTYNVL 278 (324)
Q Consensus 202 ~~~~~~~~~~~~ip~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~P~~i~~~~ 278 (324)
.|.++..++...+.++++++.+.-+..-....+++.....+.- .++.-..-.++.+.+.|+++|.-..+..+.
T Consensus 411 ~yR~~~~lil~~~llLIv~~~~lGLl~G~~G~~~~~~p~~r~c----~~~tGg~~Lm~gv~~~Flf~~~l~l~~~~~ 483 (806)
T PF05478_consen 411 SYRWIVGLILCCVLLLIVLCLLLGLLCGCCGYRRRADPTDRGC----SSNTGGNFLMAGVGLSFLFSWFLMLLVLFY 483 (806)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCcccCC----CCCccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444455555555543222221111111 123334445666777788888876665443
No 58
>PRK09458 pspB phage shock protein B; Provisional
Probab=23.11 E-value=2.1e+02 Score=18.23 Aligned_cols=25 Identities=28% Similarity=0.302 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCC
Q psy5192 211 QYAIPLSVISFVYARMALRLWGSKA 235 (324)
Q Consensus 211 ~~~ip~~i~~~~~~~i~~~~~~~~~ 235 (324)
+..+|+++.+++-.-++..++.+++
T Consensus 5 fl~~PliiF~ifVaPiWL~LHY~sk 29 (75)
T PRK09458 5 FLAIPLTIFVLFVAPIWLWLHYRSK 29 (75)
T ss_pred HHHHhHHHHHHHHHHHHHHHhhccc
Confidence 3456766666666655555544443
No 59
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=22.61 E-value=1.1e+02 Score=19.84 Aligned_cols=20 Identities=15% Similarity=0.170 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHHHHHhcCC
Q psy5192 215 PLSVISFVYARMALRLWGSK 234 (324)
Q Consensus 215 p~~i~~~~~~~i~~~~~~~~ 234 (324)
.+++.++....+++..+|.+
T Consensus 15 ~~iiaIvvW~iv~ieYrk~~ 34 (81)
T PF00558_consen 15 ALIIAIVVWTIVYIEYRKIK 34 (81)
T ss_dssp HHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444443
No 60
>PF05241 EBP: Emopamil binding protein ; InterPro: IPR007905 Emopamil binding protein (EBP) is a nonglycosylated type I integral membrane protein of endoplasmic reticulum and shows high level expression in epithelial tissues. The EBP protein has emopamil binding domains, including the sterol acceptor site and the catalytic centre, which show Delta8-Delta7 sterol isomerase activity. Human sterol isomerase, a homologue of mouse EBP, is suggested not only to play a role in cholesterol biosynthesis, but also to affect lipoprotein internalisation. In humans, mutations of EBP are known to cause the genetic disorder of X-linked dominant chondrodysplasia punctata (CDPX2). This syndrome of humans is lethal in most males, and affected females display asymmetric hyperkeratotic skin and skeletal abnormalities [].; GO: 0047750 cholestenol delta-isomerase activity, 0016125 sterol metabolic process, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=21.97 E-value=3e+02 Score=21.42 Aligned_cols=36 Identities=11% Similarity=0.168 Sum_probs=26.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy5192 199 TMILYRRVLAVVQYAIPLSVISFVYARMALRLWGSK 234 (324)
Q Consensus 199 ~~~~~~~~~~~~~~~ip~~i~~~~~~~i~~~~~~~~ 234 (324)
....|......+-.++|..++.-++-.+.+..+..+
T Consensus 157 y~W~y~v~~N~iWivvP~~~l~~s~~~i~~a~~~~~ 192 (194)
T PF05241_consen 157 YFWFYFVFPNGIWIVVPLLLLYQSWKEIARAFRAAQ 192 (194)
T ss_pred hheeehhhcchHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334555566677888999999999998887776544
Done!