RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy5192
(324 letters)
>gnl|CDD|215646 pfam00001, 7tm_1, 7 transmembrane receptor (rhodopsin family).
This family contains, amongst other G-protein-coupled
receptors (GCPRs), members of the opsin family, which
have been considered to be typical members of the
rhodopsin superfamily. They share several motifs, mainly
the seven transmembrane helices, GCPRs of the rhodopsin
superfamily. All opsins bind a chromophore, such as
11-cis-retinal. The function of most opsins other than
the photoisomerases is split into two steps: light
absorption and G-protein activation. Photoisomerases, on
the other hand, are not coupled to G-proteins - they are
thought to generate and supply the chromophore that is
used by visual opsins.
Length = 251
Score = 179 bits (457), Expect = 4e-55
Identities = 71/261 (27%), Positives = 123/261 (47%), Gaps = 12/261 (4%)
Query: 55 WIVATSRRMQNVTNCFIANLALADIVIGLFAIPFQFQAALLQRWNLPNFMCPFCPFVQCL 114
++ +++++ TN F+ NLA+AD++ L P+ + W + +C F+ +
Sbjct: 1 LVILRTKKLRTPTNIFLLNLAVADLLFLLTLPPWALYYLVGGDWPFGDALCKLVGFLFVV 60
Query: 115 TVTVSVLTLTAIAVDRHRAILNPLSARP--SKLRAKICIFGIWTLSSFLAAPMAIATGVT 172
S+L LTAI++DR+ AI++PL R + RAK+ I +W L+ L+ P + + +
Sbjct: 61 NGYASILLLTAISIDRYLAIVHPLRYRRIRTPRRAKVLILVVWVLALLLSLPPLLFSWLR 120
Query: 173 MEEEYTDPAGRIHLKPFCTNIHLSDDTMILYRRVLAVVQYAIPLSVISFVYARMALRLWG 232
EE C + T Y + ++ + +PL VI Y + L
Sbjct: 121 TVEEGNV--------TTCLIDFPEESTKRSYTLLSTLLGFVLPLLVILVCYTLILRTLRK 172
Query: 233 SKAPGNAQDSRDATLMKNKKKVIKMLVIVVALFAICWLPLQTYNVLQGIFPSINSYHYIN 292
G +Q + K ++K KML++VV +F +CWLP +L + P ++ + +
Sbjct: 173 RARSGASQARAKRSSSK-ERKAAKMLLVVVVVFVLCWLPYHIVLLLDSLCP-LSIWRLLP 230
Query: 293 IVFFCCDWLAMSNSCYNPFIY 313
WLA NSC NP IY
Sbjct: 231 TALLITLWLAYVNSCLNPIIY 251
>gnl|CDD|222976 PHA03087, PHA03087, G protein-coupled chemokine receptor-like
protein; Provisional.
Length = 335
Score = 93.7 bits (233), Expect = 8e-22
Identities = 73/330 (22%), Positives = 137/330 (41%), Gaps = 53/330 (16%)
Query: 1 METQNLKGYKSDETVSITEKYLGIYKVPTSIIILLSVFYGTISVLAVVGNFLVIWIVATS 60
T DE + + +G T +I++ Y TI +VGN +VI V T
Sbjct: 13 NTTDYYYDTYYDEDYADCDLNIGYDTNSTILIVV----YSTIFFFGLVGNIIVI-YVLTK 67
Query: 61 RRMQNVTNCFIANLALADIVIGLFAIPFQFQAALLQRWNLPNFMCPFCPFVQCLTVTVSV 120
+++ + ++ NLA++D++ + +PFQ +L +W+ F C + + S+
Sbjct: 68 TKIKTPMDIYLLNLAVSDLLFVM-TLPFQIYYYILFQWSFGEFACKIVSGLYYIGFYNSM 126
Query: 121 LTLTAIAVDRHRAILNPLSA--RPSKLRAKICIFGIWTLSSFLAAPMAIATGVTMEEE-- 176
+T ++VDR+ AI++P+ + + I IW +S P+ + E
Sbjct: 127 NFITVMSVDRYIAIVHPVKSNKINTVKYGYIVSLVIWIISIIETTPILFVYTTKKDHETL 186
Query: 177 -----YTDPAGRIHLKPFCTNIHLSDDTMILYRRVLAVVQYAIPLSVISFVYARMALRLW 231
Y + ++ K F + ++ IPL+++ + Y+++ + L
Sbjct: 187 ICCMFYNNKT--MNWKLFIN-------------FEINIIGMLIPLTILLYCYSKILITLK 231
Query: 232 GSKAPGNAQDSRDATLMKNKKKVIKMLVIVVALFAICWLPLQTYNV--------LQGIFP 283
G K KK IK+++I+V LF I WLP +NV +
Sbjct: 232 GINKS------------KKNKKAIKLVLIIVILFVIFWLP---FNVSVFVYSLHILHFKS 276
Query: 284 SINSYHYINIVFFCCDWLAMSNSCYNPFIY 313
+ YI + +++S+ C NP IY
Sbjct: 277 GCKAVKYIQYALHVTEIISLSHCCINPLIY 306
>gnl|CDD|165021 PHA02638, PHA02638, CC chemokine receptor-like protein;
Provisional.
Length = 417
Score = 64.3 bits (156), Expect = 2e-11
Identities = 74/315 (23%), Positives = 142/315 (45%), Gaps = 45/315 (14%)
Query: 30 SIIILLSVFYGTISVLAVVGNFLVIWIVATSRRMQNVTNCFIANLALADIVIGLFAIPFQ 89
SI + +FY I +L + GN +I I+ ++++ +T+ +I NLA++D++ F I F
Sbjct: 96 SISEYIKIFYIIIFILGLFGNAAIIMIL-FCKKIKTITDIYIFNLAISDLI---FVIDFP 151
Query: 90 FQA-ALLQRWNLPNFMCPFCPFVQCLTVTVSVLTLTAIAVDRHRAILNPLS---ARPSKL 145
F +W +FMC + ++ +T +++DR+ AIL P+S R +
Sbjct: 152 FIIYNEFDQWIFGDFMCKVISASYYIGFFSNMFLITLMSIDRYFAILYPISFQKYRTFNI 211
Query: 146 RAKICIFGIWTLSSFLAAP---MAIATGVTMEEEYTDPAGRIHLKPFCTNIHLSDDT-MI 201
+CI W LS + +P + A+ + + ++ + CT I ++ +
Sbjct: 212 GIILCIIS-WILSLIITSPAYFIFEASNIIFSAQDSNETISNYQ---CTLIEDNEKNNIS 267
Query: 202 LYRRVLA----VVQYAIPLSVISFVYARMALRLWGSKAPGNAQDSRDATLMKNKK-KVIK 256
R+L ++ IP+ + +F Y ++ L+L L K+KK K I
Sbjct: 268 FLGRILQFEINILGMFIPIIIFAFCYIKIILKL--------------KQLKKSKKTKSII 313
Query: 257 MLVIVVALFAICWLPLQTYNVLQGI-----FPSINSYHYINIV-----FFCCDWLAMSNS 306
++ I++ ICW+PL + + F SI S H + + +++++
Sbjct: 314 IVSIIIICSLICWIPLNIVILFATMYSFKGFNSIISEHICGFIKLGYAMMLAEAISLTHC 373
Query: 307 CYNPFIYGIYNDKER 321
C NP IY + + R
Sbjct: 374 CINPLIYTLIGENFR 388
>gnl|CDD|165177 PHA02834, PHA02834, chemokine receptor-like protein; Provisional.
Length = 323
Score = 51.8 bits (124), Expect = 1e-07
Identities = 65/284 (22%), Positives = 122/284 (42%), Gaps = 31/284 (10%)
Query: 37 VFYGTISVLAVVGNFLVIWIVATSRRMQNVTNCFIANLALADIVIGLFAIPFQFQAALLQ 96
VFY + + ++GN LVI ++ R M V + ++ N+A++D+++ +F+ PF L
Sbjct: 33 VFYILLFIFGLIGNVLVIAVLIVKRFM-FVVDVYLFNIAMSDLML-VFSFPFIIHND-LN 89
Query: 97 RWNLPNFMCPFCPFVQCLTVTVSVLTLTAIAVDRHRAILNPLSARPSKLRAKICI-FGIW 155
W FMC V + ++ +T I++DR+ ++N + + + + W
Sbjct: 90 EWIFGEFMCKLVLGVYFVGFFSNMFFVTLISIDRYILVVNATKIKNKSISLSVLLSVAAW 149
Query: 156 TLSSFLAAPMAIATGVTMEEEYTDPAGRIHLKPFCTNIHLSDDTMILYRRVLAVVQYAIP 215
S L+ P + V + TD + + N S + + + IP
Sbjct: 150 VCSVILSMPAMVLYYV----DNTDNLKQCIFNDYHENFSWS----AFFNFEINIFGIVIP 201
Query: 216 LSVISFVYARMALRLWGSKAPGNAQDSRDATLMKNKKKVIKMLVIVVALFAICWLPLQTY 275
L ++ + Y+++ L K KNK + IK+++ VV + W+P
Sbjct: 202 LIILIYCYSKILYTLKNCKN-------------KNKTRSIKIILTVVTFTVVFWVPFNIV 248
Query: 276 ---NVLQGI-FPSINSYHYINIVF--FCCDWLAMSNSCYNPFIY 313
N LQ + I YH+ IV+ + ++ + C NP IY
Sbjct: 249 LFINSLQSVGLIDIGCYHFKKIVYSIDIAELISFVHCCVNPIIY 292
>gnl|CDD|223017 PHA03235, PHA03235, DNA packaging protein UL33; Provisional.
Length = 409
Score = 40.6 bits (95), Expect = 8e-04
Identities = 55/231 (23%), Positives = 88/231 (38%), Gaps = 36/231 (15%)
Query: 67 TNCFIANLALADIVIGLFAIPFQFQAALLQRWNLPNFMCPFCPFVQCL---TVTVSVLTL 123
TN ++ANL + +F +PF +L L + C F L + TV T+
Sbjct: 74 TNLYLANL------LTVFVLPF----IMLSNQGLLSGSVAGCKFASLLYYASCTVGFATV 123
Query: 124 TAIAVDRHRAILNPLSARPSKLRAKICIFGI-WTLSSFLAAPMAIATGVTMEEEYTDPAG 182
IA DR+R I AR S R+ I G+ W S + P + T V + + DP
Sbjct: 124 ALIAADRYRVIHQRTRARSSAYRSTYKILGLTWFASLICSGPAPVYTTV-VAHDDVDPEA 182
Query: 183 RIHLKPFCTNIHLSDDTMILYRRVL-AVVQYAIPLSVISFVYARMALRLWGSKAPGNAQD 241
+ T++ +VL +V P+ ++++ Y L + +
Sbjct: 183 PGYETCVIYFRADQVKTVLSTFKVLLTLVWGIAPVVMMTWFYTFFYRTLKRA-----SYK 237
Query: 242 SRDATLMKNKKKVIKMLVIVVALFAICWLPLQTYNVLQGIFPSINSYHYIN 292
R TL V + + +L LQT V IF +SY +
Sbjct: 238 KRSRTLT------------FVCILLLSFLCLQTPFVAIMIF---DSYATLI 273
>gnl|CDD|192535 pfam10320, 7TM_GPCR_Srsx, Serpentine type 7TM GPCR chemoreceptor
Srsx. Chemoreception is mediated in Caenorhabditis
elegans by members of the seven-transmembrane
G-protein-coupled receptor class (7TM GPCRs) of proteins
which are of the serpentine type. Srsx is a solo family
amongst the superfamilies of chemoreceptors.
Chemoperception is one of the central senses of soil
nematodes like C. elegans which are otherwise 'blind'
and 'deaf'.
Length = 257
Score = 35.3 bits (82), Expect = 0.032
Identities = 48/281 (17%), Positives = 89/281 (31%), Gaps = 31/281 (11%)
Query: 43 SVLAVVGNFLVIWIVATSRRMQNVTNCFIANLALADIVIGLFAIPFQFQAALLQRWNLPN 102
SV+ + GN ++I + +++++ + I LAD++ I F L L
Sbjct: 1 SVIGIFGNVIMIILTFKKKKLRSKCSYLICVQCLADLLCLSGEIIFVVL--LFTGTQLTR 58
Query: 103 FMCPFCPFVQCLTVTVSVLTLTAIAVDRHRAILNPLSARPSKLRAKICIFGIWTLSSFLA 162
C T + I +DR A+ P+ R + I L
Sbjct: 59 NECFLIIIPYIFGQTAQSPLMLMIGIDRLIAVKFPIFYRLLSSSKYLFIQ--------LI 110
Query: 163 APMAIATGVTMEEEYTDPAGRIHLKPFCTN-IHLSDDTMILYRRVLAVVQYAIPLSVISF 221
P+ ++ + + I C + L+ R+ + I + V+
Sbjct: 111 FPVIYSSFILVYGFLERDDETII---VCAPPLALNGTA----FRIFTLSSVIINVIVL-I 162
Query: 222 VYARMALRLWGSKAPGNAQDSRDATLMKNKKKVIKMLVIVVALFAICWLPLQTYNVLQGI 281
VY + + N+ KKV K L + V +F W N + +
Sbjct: 163 VYIILIIIFKKKGQTTNSDS----------KKVFKSLQVTVIIFIFGWFTSTIANTVFLL 212
Query: 282 FPSINSYHYINIVFFCCDWLAMSNSCYNPFIYGIYNDKERK 322
NI+ + N F+ + + RK
Sbjct: 213 LTE--DGEVENIIQMYAGIFVNLSFSQNFFVTYWRSSEYRK 251
>gnl|CDD|217394 pfam03155, Alg6_Alg8, ALG6, ALG8 glycosyltransferase family.
N-linked (asparagine-linked) glycosylation of proteins
is mediated by a highly conserved pathway in eukaryotes,
in which a lipid (dolichol phosphate)-linked
oligosaccharide is assembled at the endoplasmic
reticulum membrane prior to the transfer of the
oligosaccharide moiety to the target asparagine
residues. This oligosaccharide is composed of
Glc(3)Man(9)GlcNAc(2). The addition of the three glucose
residues is the final series of steps in the synthesis
of the oligosaccharide precursor. Alg6 transfers the
first glucose residue, and Alg8 transfers the second
one. In the human alg6 gene, a C->T transition, which
causes Ala333 to be replaced with Val, has been
identified as the cause of a congenital disorder of
glycosylation, designated as type Ic OMIM:603147.
Length = 463
Score = 31.6 bits (72), Expect = 0.53
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 4/34 (11%)
Query: 254 VIKMLVIVVALFAICWLPL----QTYNVLQGIFP 283
++K+ ++VV FAI +LP Q VL +FP
Sbjct: 217 ILKLALVVVGTFAIIFLPFLYLKQLPQVLSRLFP 250
>gnl|CDD|171815 PRK12911, PRK12911, bifunctional preprotein translocase subunit
SecD/SecF; Reviewed.
Length = 1403
Score = 31.4 bits (71), Expect = 0.71
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 7/49 (14%)
Query: 10 KSDETVSITEKYLGIYKVPTSIIILLSVFY---GTISVLAVVGNFLVIW 55
KS T I LG+ +I+L+SV+Y G I+ AV+ N L+IW
Sbjct: 905 KSQRTQGIISVCLGL----AVLIVLMSVYYRFGGVIASGAVLLNLLLIW 949
>gnl|CDD|143541 cd07167, NR_DBD_Lrh-1_like, The DNA-binding domain of Lrh-1 like
nuclear receptor family like is composed of two C4-type
zinc fingers. The DNA-binding domain of Lrh-1 like
nuclear receptor family like is composed of two C4-type
zinc fingers. Each zinc finger contains a group of four
Cys residues which co-ordinates a single zinc atom. This
domain interacts with specific DNA sites upstream of the
target gene and modulates the rate of transcriptional
initiation. This nuclear receptor family includes at
least three subgroups of receptors that function in
embryo development and differentiation, and other
processes. FTZ-F1 interacts with the cis-acting DNA
motif of ftz gene, which is required at several stages
of development. Particularly, FTZ-F1 regulated genes are
strongly linked to steroid biosynthesis and
sex-determination; LRH-1 is a regulator of bile-acid
homeostasis, steroidogenesis, reverse cholesterol
transport and the initial stages of embryonic
development; SF-1 is an essential regulator of endocrine
development and function and is considered a master
regulator of reproduction; SF-1 functions cooperatively
with other transcription factors to modulate gene
expression. Phospholipids have been identified as
potential ligand for LRH-1 and steroidogenic factor-1
(SF-1). However, the ligand for FTZ-F1 has not yet been
identified. Most nuclear receptors function as homodimer
or heterodimers. However, LRH-1 and SF-1 bind to DNA as
monomers. Like other members of the nuclear receptor
(NR) superfamily of ligand-activated transcription
factors, receptors in this family have a central well
conserved DNA-binding domain (DBD), a variable
N-terminal domain, a flexible hinge and a C-terminal
ligand binding domain (LBD).
Length = 93
Score = 29.0 bits (65), Expect = 1.0
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 3/28 (10%)
Query: 105 CPFCPFVQCLTVTVSVLTLTAIAVDRHR 132
CP+C F +CL+V + L A+ DR R
Sbjct: 53 CPYCRFQKCLSVG---MKLEAVRADRMR 77
>gnl|CDD|233119 TIGR00763, lon, ATP-dependent protease La. This protein is induced
by heat shock and other stresses in E. coli, B.
subtilis, and other species. The yeast member,
designated PIM1, is located in the mitochondrial matrix,
required for mitochondrial function, and also induced by
heat shock [Protein fate, Degradation of proteins,
peptides, and glycopeptides].
Length = 775
Score = 29.2 bits (66), Expect = 4.1
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 1 METQNLKGYKSDETVSITEKYL 22
ME L GY +E + I +KYL
Sbjct: 484 MEVIELSGYTEEEKLEIAKKYL 505
>gnl|CDD|234183 TIGR03361, VI_Rhs_Vgr, type VI secretion system Vgr family protein.
Members of this protein family belong to the Rhs
element Vgr protein family (see TIGR01646), but
furthermore all are found in genomes with type VI
secretion loci. However, members of this protein family,
although recognizably correlated to type VI secretion
according the partial phylogenetic profiling algorithm,
are often found far the type VI secretion locus.
Length = 513
Score = 28.7 bits (65), Expect = 4.9
Identities = 15/47 (31%), Positives = 19/47 (40%), Gaps = 9/47 (19%)
Query: 141 RPSKLRAKICIFGIWTLSSFLAAPMAIATGVTMEEEYTDPAGRIHLK 187
RP + K I G T A G EE YTD GR+ ++
Sbjct: 348 RPPRRTPKPRIDGPQT---------ATVVGPAGEEIYTDEYGRVKVQ 385
>gnl|CDD|183198 PRK11560, PRK11560, phosphoethanolamine transferase; Provisional.
Length = 558
Score = 28.5 bits (64), Expect = 6.3
Identities = 7/32 (21%), Positives = 17/32 (53%)
Query: 248 MKNKKKVIKMLVIVVALFAICWLPLQTYNVLQ 279
++ + I+ L +VV + W P++ ++ Q
Sbjct: 151 LRTPGQRIRSLAVVVLAGLLVWAPIRLLDIQQ 182
>gnl|CDD|130320 TIGR01253, thiP, thiamine ABC transporter, permease protein. The
model describes thiamine ABC transporter, permease
protein in bacteria. The protein belongs to the larger
ABC transport system. It consists of atleast three
components: the inner mebrane permease; thiamine binding
protein; an ATP-binding subunit. It has been
experimentally demonstrated that the mutants in the
various steps in the de novo synthesis of the thiamine
and the biologically active form, namely thiamine
pyrophosphate can be exogenously supplemented with
thiamine, thiamine monophosphate (TMP) or thiamine
pyrophosphate (TPP) [Transport and binding proteins,
Other].
Length = 519
Score = 28.3 bits (63), Expect = 6.7
Identities = 33/135 (24%), Positives = 58/135 (42%), Gaps = 14/135 (10%)
Query: 110 FVQCLTVTVSVLTL------TAIAVDRHRAIL---NPLSARPSKLRAKICIFGIWTLSSF 160
F+ C +VL+L T I + ++AIL + A L +C G++ LS
Sbjct: 197 FMLCFASFATVLSLGGGPQATTIELAIYQAILFDFDLAKAALFALLQFVCCLGLFLLSQR 256
Query: 161 LAAPMAIATGVTMEEEYTDPAGRIHLKPFCTNIHLSDDTMILYRRVLAVVQYAIPLSVIS 220
+ AIA G+++ + DP ++ K C + + L+ +LA++ A+ +
Sbjct: 257 FS--KAIANGLSLLNGWFDPDDKLASK-ICDILLILLALFFLFPPLLAIIIDALNSRNLL 313
Query: 221 FVYARMAL--RLWGS 233
V A L L S
Sbjct: 314 EVLANPQLWQALGTS 328
>gnl|CDD|221622 pfam12530, DUF3730, Protein of unknown function (DUF3730). This
domain family is found in eukaryotes, and is typically
between 220 and 262 amino acids in length.
Length = 230
Score = 27.4 bits (61), Expect = 8.6
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Query: 112 QCLTVTVSVLTLTAIAVDRH----RAILNPLSARPSKLRAKICI 151
+ + V + +LT DRH +A+L LS S+ R ++ I
Sbjct: 54 ELVQVLLRLLTRLWAQNDRHFPFLQALLLFLSNSGSEERWEVLI 97
>gnl|CDD|223550 COG0474, MgtA, Cation transport ATPase [Inorganic ion transport and
metabolism].
Length = 917
Score = 28.1 bits (63), Expect = 8.7
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Query: 26 KVPTSIIILLSVFYGTISVLAVVGNFLVIWIVATSRRMQNVTNCFIANLALADIVI--GL 83
+V T + L+ + VLA+V ++++V R + F+ LALA + GL
Sbjct: 256 EVKTPLQRKLNKLGKFLLVLALVL-GALVFVVGLFRGGNGLLESFLTALALAVAAVPEGL 314
Query: 84 FAI 86
A+
Sbjct: 315 PAV 317
>gnl|CDD|219962 pfam08668, HDOD, HDOD domain.
Length = 195
Score = 27.2 bits (61), Expect = 9.1
Identities = 9/14 (64%), Positives = 11/14 (78%)
Query: 92 AALLQRWNLPNFMC 105
AALL+RWNLP +
Sbjct: 174 AALLERWNLPEELV 187
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.328 0.139 0.434
Gapped
Lambda K H
0.267 0.0843 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 16,506,984
Number of extensions: 1592566
Number of successful extensions: 2083
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2062
Number of HSP's successfully gapped: 59
Length of query: 324
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 227
Effective length of database: 6,635,264
Effective search space: 1506204928
Effective search space used: 1506204928
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 59 (26.3 bits)