RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5192
         (324 letters)



>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}
          Length = 348

 Score =  123 bits (308), Expect = 4e-33
 Identities = 64/299 (21%), Positives = 120/299 (40%), Gaps = 14/299 (4%)

Query: 25  YKVPTSIIILLSVFYGTISVLAVVGNFLVIWIVATSRRMQNVTNCFIANLALADIVIGLF 84
           Y        +L+ +   + +L    NFL +++    ++++   N  + NLA+AD+ +   
Sbjct: 30  YLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFG 89

Query: 85  AIPFQFQAALLQRWNLPNFMCPFCPFVQCLTVTVSVLTLTAIAVDRHRAILNPLSARP-S 143
                   +L   +      C    F   L   +++ +L  +A++R+  +  P+S     
Sbjct: 90  GFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFG 149

Query: 144 KLRAKICIFGIWTLSSFLAAPMAIATGVTMEEEYTDPAGRIHLKPFCTNIHLSDDTMILY 203
           +  A + +   W ++   AAP  +     + E      G  +  P     + S      +
Sbjct: 150 ENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNES------F 203

Query: 204 RRVLAVVQYAIPLSVISFVYARMALRLWGSKAPGNAQDSRDATLMKNKKKVIKMLVIVVA 263
              + VV + IPL VI F Y ++   +        AQ    AT  K +K+V +M++I+V 
Sbjct: 204 VIYMFVVHFIIPLIVIFFCYGQLVFTVK----EAAAQQQESATTQKAEKEVTRMVIIMVI 259

Query: 264 LFAICWLPLQTYNVLQGIFPSINSYHYINIVFFCCDWLAMSNSCYNPFIYGIYNDKERK 322
            F ICWLP                  +  I      + A +++ YNP IY + N + R 
Sbjct: 260 AFLICWLPYAGVAFYIFTHQ---GSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRN 315


>d1z84a1 d.13.1.2 (A:23-195) Galactose-1-phosphate
           uridylyltransferase {Thale cress (Arabidopsis thaliana)
           [TaxId: 3702]}
          Length = 173

 Score = 25.4 bits (55), Expect = 7.1
 Identities = 8/23 (34%), Positives = 10/23 (43%)

Query: 87  PFQFQAALLQRWNLPNFMCPFCP 109
           P  F++   Q  N     CPFC 
Sbjct: 23  PTDFKSKSPQNPNPKPSSCPFCI 45


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.328    0.139    0.434 

Gapped
Lambda     K      H
   0.267   0.0352    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,200,089
Number of extensions: 53025
Number of successful extensions: 125
Number of sequences better than 10.0: 1
Number of HSP's gapped: 123
Number of HSP's successfully gapped: 3
Length of query: 324
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 239
Effective length of database: 1,240,546
Effective search space: 296490494
Effective search space used: 296490494
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 53 (25.2 bits)