BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy5195
         (334 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2OZO|A Chain A, Autoinhibited Intact Human Zap-70
          Length = 613

 Score = 30.4 bits (67), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 21/95 (22%), Positives = 35/95 (36%), Gaps = 2/95 (2%)

Query: 97  YTDANGFYHGNLGTKNGYDVGHAYGGGKDIGLTNVQGG--SYGDVRGRNRGHQVAGFSTS 154
           Y +   F H NL  +N   V   Y    D GL+   G   SY   R   +          
Sbjct: 451 YLEEKNFVHRNLAARNVLLVNRHYAKISDFGLSKALGADDSYYTARSAGKWPLKWYAPEC 510

Query: 155 YNKHESGNKATYYDDGLGHGGSIQYGSKDHRSRDG 189
            N  +  +++  +  G+    ++ YG K ++   G
Sbjct: 511 INFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKG 545


>pdb|3UJH|A Chain A, Crystal Structure Of Substrate-Bound Glucose-6-Phosphate
           Isomerase From Toxoplasma Gondii
 pdb|3UJH|B Chain B, Crystal Structure Of Substrate-Bound Glucose-6-Phosphate
           Isomerase From Toxoplasma Gondii
          Length = 567

 Score = 30.0 bits (66), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 18/61 (29%), Positives = 29/61 (47%)

Query: 63  GAYTGAYNTGVNGLSNNGIQALNTYGDRGYGAGGYTDANGFYHGNLGTKNGYDVGHAYGG 122
           GA+  A +T ++G S  GIQ+   +G   +  G Y+  +      L  + GYDV   +  
Sbjct: 248 GAHFCAVSTNLDGTSKFGIQSDRVFGFWDWVGGRYSVTSAVGILPLALQYGYDVAQEFLN 307

Query: 123 G 123
           G
Sbjct: 308 G 308


>pdb|1IE7|C Chain C, Phosphate Inhibited Bacillus Pasteurii Urease Crystal
           Structure
          Length = 570

 Score = 27.7 bits (60), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 13/28 (46%), Positives = 16/28 (57%)

Query: 99  DANGFYHGNLGTKNGYDVGHAYGGGKDI 126
           D  G Y  ++G K+GY VG   GG  DI
Sbjct: 78  DYTGIYKADIGVKDGYIVGIGKGGNPDI 105


>pdb|1UBP|C Chain C, Crystal Structure Of Urease From Bacillus Pasteurii
           Inhibited With Beta-Mercaptoethanol At 1.65 Angstroms
           Resolution
 pdb|2UBP|C Chain C, Structure Of Native Urease From Bacillus Pasteurii
 pdb|3UBP|C Chain C, Diamidophosphate Inhibited Bacillus Pasteurii Urease
 pdb|4UBP|C Chain C, Structure Of Bacillus Pasteurii Urease Inhibited With
           Acetohydroxamic Acid At 1.55 A Resolution
 pdb|1S3T|C Chain C, Borate Inhibited Bacillus Pasteurii Urease Crystal
           Structure
 pdb|4AC7|C Chain C, The Crystal Structure Of Sporosarcina Pasteurii Urease In
           Complex With Citrate
          Length = 570

 Score = 27.7 bits (60), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 13/28 (46%), Positives = 16/28 (57%)

Query: 99  DANGFYHGNLGTKNGYDVGHAYGGGKDI 126
           D  G Y  ++G K+GY VG   GG  DI
Sbjct: 78  DYTGIYKADIGVKDGYIVGIGKGGNPDI 105


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.313    0.136    0.413 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,307,358
Number of Sequences: 62578
Number of extensions: 486957
Number of successful extensions: 662
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 654
Number of HSP's gapped (non-prelim): 31
length of query: 334
length of database: 14,973,337
effective HSP length: 99
effective length of query: 235
effective length of database: 8,778,115
effective search space: 2062857025
effective search space used: 2062857025
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 52 (24.6 bits)