BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy5195
         (334 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q89893|DR2_HHV6U Uncharacterized protein DR2 OS=Human herpesvirus 6A (strain
           Uganda-1102) GN=DR2L PE=3 SV=1
          Length = 620

 Score = 36.6 bits (83), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 38/128 (29%), Positives = 56/128 (43%), Gaps = 17/128 (13%)

Query: 172 GHGGSIQYGSKDH-RSRDGVGNAFGGAYHDAHLKTN-----AHGNKQNFGGGQGFGTKTG 225
           GH G  Q  S DH R   G G+   GA+  A+ KT       H  ++    G+    +  
Sbjct: 346 GHHGR-QESSDDHQRGGSGRGHRDDGAHRHANDKTEPQQRGEHEERKQTDSGRHEHAQES 404

Query: 226 YV-------NNVGDTKLYGGGVGQGYTGTFNNGFNPALPVLPPAPVPY--IPPPPVITP- 275
            V          GD++   GG  Q Y G   +   P++P+  P P P   +PPP ++ P 
Sbjct: 405 QVARRDEEETEQGDSERSCGGATQTYGGRGRHDSCPSIPLSVPGPDPRLWVPPPHLLFPS 464

Query: 276 PVLPQSPV 283
           P+ P +PV
Sbjct: 465 PLPPMTPV 472


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.313    0.138    0.426 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 159,934,690
Number of Sequences: 539616
Number of extensions: 8778451
Number of successful extensions: 40559
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 809
Number of HSP's that attempted gapping in prelim test: 27968
Number of HSP's gapped (non-prelim): 6822
length of query: 334
length of database: 191,569,459
effective HSP length: 118
effective length of query: 216
effective length of database: 127,894,771
effective search space: 27625270536
effective search space used: 27625270536
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 61 (28.1 bits)