Query psy5195
Match_columns 334
No_of_seqs 2 out of 4
Neff 1.2
Searched_HMMs 46136
Date Fri Aug 16 19:45:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5195.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5195hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1923|consensus 55.0 9.8 0.00021 40.6 2.8 20 260-279 299-318 (830)
2 PF07538 ChW: Clostridial hydr 52.8 12 0.00026 25.0 2.0 17 17-33 18-34 (36)
3 KOG0921|consensus 52.4 20 0.00044 39.6 4.6 40 151-198 1155-1194(1282)
4 PF12881 NUT_N: NUT protein N 44.6 36 0.00079 33.2 4.6 51 254-304 19-74 (328)
5 PF13003 MRL1: Ribosomal prote 26.7 30 0.00064 30.0 0.8 15 26-40 92-106 (133)
6 KOG2675|consensus 26.5 44 0.00096 34.0 2.1 12 277-288 257-268 (480)
7 KOG0921|consensus 23.8 88 0.0019 35.0 3.8 49 87-139 1198-1246(1282)
8 PHA01732 proline-rich protein 23.4 83 0.0018 26.3 2.8 9 257-265 10-18 (94)
9 PF05385 Adeno_E4: Mastadenovi 22.9 42 0.00091 28.5 1.0 9 264-272 3-11 (109)
10 PF10480 ICAP-1_inte_bdg: Beta 22.3 45 0.00097 30.7 1.2 15 163-177 140-154 (200)
No 1
>KOG1923|consensus
Probab=55.03 E-value=9.8 Score=40.60 Aligned_cols=20 Identities=45% Similarity=0.835 Sum_probs=11.0
Q ss_pred CCCCCCCCCCCCcCCCCCCC
Q psy5195 260 PPAPVPYIPPPPVITPPVLP 279 (334)
Q Consensus 260 ppapvpyippppvitppvlp 279 (334)
+|.|++.+||||.+.|||.|
T Consensus 299 ~p~~~~~~pPppp~~ppv~~ 318 (830)
T KOG1923|consen 299 SPLRLRCSPPPPPPFPPVGP 318 (830)
T ss_pred CCCCCCCCCCCCCCCCCCCC
Confidence 34455556666665555554
No 2
>PF07538 ChW: Clostridial hydrophobic W; InterPro: IPR006637 This hydrophobic repeat is found in a number of Chlostridium proteins. It contains a conserved tryptophan residue.
Probab=52.84 E-value=12 Score=25.03 Aligned_cols=17 Identities=47% Similarity=0.600 Sum_probs=14.8
Q ss_pred EEecceeeeEEEEEEee
Q psy5195 17 HLTGIGLAVQAFYINLT 33 (334)
Q Consensus 17 hltgiglavqafyinlt 33 (334)
--+|.++.+|||-|+||
T Consensus 18 Gt~G~~~rlEai~i~L~ 34 (36)
T PF07538_consen 18 GTTGQGLRLEAIKIKLT 34 (36)
T ss_pred ccCCCCcEEEEEEEEEe
Confidence 35788999999999997
No 3
>KOG0921|consensus
Probab=52.36 E-value=20 Score=39.62 Aligned_cols=40 Identities=30% Similarity=0.431 Sum_probs=29.9
Q ss_pred eeeccccccCCCcceeecCCCCCccceeecCCcccccCCcccccCccc
Q psy5195 151 FSTSYNKHESGNKATYYDDGLGHGGSIQYGSKDHRSRDGVGNAFGGAY 198 (334)
Q Consensus 151 fstsy~k~esgnkatyyddglghgg~iqyg~kd~r~rdg~g~afgg~y 198 (334)
=||.|.+----+|-.+||.|.-.- ..-+|.|-+.-+||||
T Consensus 1155 ~StrygDGp~PPKmaryDnG~~~n--------~SgyRRGgssysgGGY 1194 (1282)
T KOG0921|consen 1155 DSTRYGDGPGPPKMARYDNGPSNN--------NSGYRRGGSSYSGGGY 1194 (1282)
T ss_pred ccccccCCCCCcccccccCCCccC--------ccccccCCCCCCCCCc
Confidence 388999988889999999984322 1235777777788877
No 4
>PF12881 NUT_N: NUT protein N terminus; InterPro: IPR024309 This domain is found in the N-terminal region of Nuclear Testis (NUT) proteins. It is also found in FAM22, which are a family of uncharacterised mammalian proteins.
Probab=44.55 E-value=36 Score=33.19 Aligned_cols=51 Identities=39% Similarity=0.773 Sum_probs=37.5
Q ss_pred CCCCCCCCCCCCCC-----CCCCcCCCCCCCCCceeeeeccCCceeccccccCCCC
Q psy5195 254 PALPVLPPAPVPYI-----PPPPVITPPVLPQSPVISGVFSPNPVITKNYQPYPSH 304 (334)
Q Consensus 254 palpvlppapvpyi-----ppppvitppvlpqspvisgvfspnpvitknyqpypsh 304 (334)
.+||++||+|.|.. |+||.+|+...|.+|.+--.|---|+++-.=.+=|+-
T Consensus 19 ~aLPf~pp~pgP~~qp~wep~pP~~~~~fppg~PLvLsafP~tpLVagdgg~gpsg 74 (328)
T PF12881_consen 19 TALPFPPPAPGPPHQPPWEPPPPLMTAAFPPGNPLVLSAFPRTPLVAGDGGPGPSG 74 (328)
T ss_pred ccCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCccccccCCCCccccCCCCCCCCC
Confidence 58999999998765 3467888888888888777777677777655554443
No 5
>PF13003 MRL1: Ribosomal protein L1; InterPro: IPR024663 This entry represents a ribosomal protein L1 domain found mainly in chordates.
Probab=26.66 E-value=30 Score=30.04 Aligned_cols=15 Identities=40% Similarity=0.660 Sum_probs=12.7
Q ss_pred EEEEEEeeeeeeecc
Q psy5195 26 QAFYINLTLDTVMGG 40 (334)
Q Consensus 26 qafyinltldtvmgg 40 (334)
|.-|||||||..++=
T Consensus 92 Q~VYldL~Ldm~l~K 106 (133)
T PF13003_consen 92 QPVYLDLTLDMKLEK 106 (133)
T ss_pred CcEEEeeeehhhhcc
Confidence 678999999988763
No 6
>KOG2675|consensus
Probab=26.50 E-value=44 Score=34.02 Aligned_cols=12 Identities=8% Similarity=-0.039 Sum_probs=6.4
Q ss_pred CCCCCceeeeec
Q psy5195 277 VLPQSPVISGVF 288 (334)
Q Consensus 277 vlpqspvisgvf 288 (334)
.--++.-++.||
T Consensus 257 ~~~~k~~~~AlF 268 (480)
T KOG2675|consen 257 SDANKGGRGALF 268 (480)
T ss_pred cccccccHHHHH
Confidence 333455566666
No 7
>KOG0921|consensus
Probab=23.76 E-value=88 Score=35.00 Aligned_cols=49 Identities=37% Similarity=0.691 Sum_probs=25.7
Q ss_pred cCCCccCCCCccccCCcccCCCCCccccccccccCCcccccceeecCCccccC
Q psy5195 87 YGDRGYGAGGYTDANGFYHGNLGTKNGYDVGHAYGGGKDIGLTNVQGGSYGDV 139 (334)
Q Consensus 87 ~g~~~~~a~gy~d~ngfy~~n~g~~ngydvg~~ygg~~d~g~t~v~gg~yg~i 139 (334)
|++.+|+.+||--.-+.||.|.|+- |++-|=|+.--|..+-.||-|.+.
T Consensus 1198 ys~gGygsGGYGgsa~~~~~~~Gag----vg~GyrGvsrgGfrnnggGdyrnp 1246 (1282)
T KOG0921|consen 1198 YSGGGYGSGGYGGSAPSARANYGAG----VGNGYRGVSRGGFRNNGGGDYRNP 1246 (1282)
T ss_pred CCCCCcCCCCCCCCCCCCCCCcccc----ccCCCccccCCccccCCCCCCCCC
Confidence 4555666666666656666665542 344444444444444455544433
No 8
>PHA01732 proline-rich protein
Probab=23.43 E-value=83 Score=26.28 Aligned_cols=9 Identities=33% Similarity=0.560 Sum_probs=3.6
Q ss_pred CCCCCCCCC
Q psy5195 257 PVLPPAPVP 265 (334)
Q Consensus 257 pvlppapvp 265 (334)
|..||+|+|
T Consensus 10 p~ppPpPpP 18 (94)
T PHA01732 10 PEPPAPLPP 18 (94)
T ss_pred CCCCCCCCC
Confidence 344444333
No 9
>PF05385 Adeno_E4: Mastadenovirus early E4 13 kDa protein; InterPro: IPR008680 This family consists of Homo sapiens and simian mastadenovirus early E4 13 kDa proteins. Human adenovirus 9 (HAdV-9) is unique in eliciting exclusively estrogen-dependent mammary tumours in Rattus spp. and in not requiring viral E1 region transforming genes for tumorigenicity. E4 codes for an oncoprotein essential for tumourigenesis by Ad9 [].
Probab=22.92 E-value=42 Score=28.47 Aligned_cols=9 Identities=67% Similarity=1.630 Sum_probs=4.8
Q ss_pred CCCCCCCCc
Q psy5195 264 VPYIPPPPV 272 (334)
Q Consensus 264 vpyippppv 272 (334)
.|-+|||||
T Consensus 3 LP~LPpPPv 11 (109)
T PF05385_consen 3 LPSLPPPPV 11 (109)
T ss_pred CCCCCCCCC
Confidence 445555555
No 10
>PF10480 ICAP-1_inte_bdg: Beta-1 integrin binding protein; InterPro: IPR019517 ICAP-1 is a serine/threonine-rich protein that binds to the cytoplasmic domains of beta-1 integrins in a highly specific manner, binding to a NPXY sequence motif on the beta-1 integrin. The cytoplasmic domains of integrins are essential for cell adhesion, and the fact that phosphorylation of ICAP-1 by interaction with the cell-matrix implies an important role of ICAP-1 during integrin-dependent cell adhesion []. Over expression of ICAP-1 strongly reduces the integrin-mediated cell spreading on extracellular matrix and inhibits both Cdc42 and Rac1. In addition, ICAP-1 induces release of Cdc42 from cellular membranes and prevents the dissociation of GDP from this GTPase []. An additional function of ICAP-1 is to promote differentiation of osteoprogenitors by supporting their condensation through modulating the integrin high affinity state [].
Probab=22.25 E-value=45 Score=30.72 Aligned_cols=15 Identities=47% Similarity=0.984 Sum_probs=12.3
Q ss_pred cceeecCCCCCccce
Q psy5195 163 KATYYDDGLGHGGSI 177 (334)
Q Consensus 163 katyyddglghgg~i 177 (334)
.+++||||||||=.+
T Consensus 140 r~V~YdDGlG~g~~l 154 (200)
T PF10480_consen 140 RMVCYDDGLGAGKNL 154 (200)
T ss_pred EEEEEecCcCCcceE
Confidence 468899999998665
Done!