Query psy5195
Match_columns 334
No_of_seqs 2 out of 4
Neff 1.2
Searched_HMMs 29240
Date Fri Aug 16 19:45:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5195.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5195hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dx8_A Integrin beta-1-binding 19.6 35 0.0012 29.0 1.2 14 164-177 95-108 (154)
2 3iot_A Maltose-binding protein 18.9 24 0.00083 29.9 0.0 12 23-34 110-121 (449)
3 2aca_A Putative adenylate cycl 11.6 1.1E+02 0.0039 24.1 2.1 17 30-46 123-140 (189)
4 2bps_A YUKD protein; ubiquitin 10.6 1E+02 0.0035 22.9 1.4 16 28-43 3-20 (81)
5 2een_A Hypothetical protein PH 9.8 1.5E+02 0.005 23.0 2.1 17 30-46 120-137 (183)
6 3n10_A Adenylate cyclase 2; CY 9.2 1.6E+02 0.0055 22.6 2.1 17 30-46 121-138 (179)
7 3bpo_A Interleukin 13; IL4, IL 9.0 78 0.0027 26.4 0.3 31 48-78 24-54 (127)
8 2dt7_B Splicing factor 3 subun 8.8 2.2E+02 0.0074 21.2 2.6 17 257-273 11-27 (85)
9 1wa7_B TIP, hypothetical 28.7 8.4 1.8E+02 0.0061 18.8 1.7 6 275-280 7-12 (26)
10 1yem_A Hypothetical protein; s 6.9 2.3E+02 0.0078 22.5 2.1 16 30-45 118-134 (179)
No 1
>4dx8_A Integrin beta-1-binding protein 1; protein-protien complex, PTB domain, nudix fold, protein-Pro interaction, membrane, nucleus, protein binding; 2.54A {Homo sapiens} PDB: 4dx9_A
Probab=19.62 E-value=35 Score=28.97 Aligned_cols=14 Identities=57% Similarity=1.021 Sum_probs=10.7
Q ss_pred ceeecCCCCCccce
Q psy5195 164 ATYYDDGLGHGGSI 177 (334)
Q Consensus 164 atyyddglghgg~i 177 (334)
++=||||+|||=.+
T Consensus 95 ~v~YdDg~g~g~~v 108 (154)
T 4dx8_A 95 MVCYDDGLGAGKSL 108 (154)
T ss_dssp EEEEECCSSSCCEE
T ss_pred heeeccccccccEE
Confidence 45569999999743
No 2
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=18.87 E-value=24 Score=29.88 Aligned_cols=12 Identities=17% Similarity=0.216 Sum_probs=7.4
Q ss_pred eeeEEEEEEeee
Q psy5195 23 LAVQAFYINLTL 34 (334)
Q Consensus 23 lavqafyinltl 34 (334)
.....+|.|-.|
T Consensus 110 ~~~~~l~YNkdl 121 (449)
T 3iot_A 110 VEALSLIYNKDL 121 (449)
T ss_dssp EEECEEEEETTT
T ss_pred cceeEEEEehHH
Confidence 445667777654
No 3
>2aca_A Putative adenylate cyclase; NESG, VPR19, Q87NV8, structural genomics, PSI, protein structure initiative; 2.25A {Vibrio parahaemolyticus} SCOP: d.63.1.2
Probab=11.60 E-value=1.1e+02 Score=24.10 Aligned_cols=17 Identities=41% Similarity=0.770 Sum_probs=14.4
Q ss_pred EEeeeeeeec-cceeeec
Q psy5195 30 INLTLDTVMG-GEYAELQ 46 (334)
Q Consensus 30 inltldtvmg-g~~~~l~ 46 (334)
+-++||.|-+ |+|+||.
T Consensus 123 ~~v~lD~~~~lg~f~EiE 140 (189)
T 2aca_A 123 FHITLDFLDGFGHFAEFA 140 (189)
T ss_dssp EEEEEEEETTTEEEEEEE
T ss_pred EEEEEEcccCCeeEEEEE
Confidence 6789999996 8998875
No 4
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=10.62 E-value=1e+02 Score=22.95 Aligned_cols=16 Identities=31% Similarity=0.611 Sum_probs=10.8
Q ss_pred EEEEeeeee--eecccee
Q psy5195 28 FYINLTLDT--VMGGEYA 43 (334)
Q Consensus 28 fyinltldt--vmgg~~~ 43 (334)
-|||+|+|- .-+..|-
T Consensus 3 ~yI~ITidl~~y~~~~~D 20 (81)
T 2bps_A 3 SYIDITIDLKHYNGSVFD 20 (81)
T ss_dssp CEEEEEEECTTTTCCEEE
T ss_pred cEEEEEEEeeccCCceEE
Confidence 489999994 4455543
No 5
>2een_A Hypothetical protein PH1819; dimer, NPPSFA, national project on Pro structural and functional analyses; 1.65A {Pyrococcus horikoshii}
Probab=9.80 E-value=1.5e+02 Score=22.96 Aligned_cols=17 Identities=41% Similarity=0.896 Sum_probs=14.1
Q ss_pred EEeeeeeeec-cceeeec
Q psy5195 30 INLTLDTVMG-GEYAELQ 46 (334)
Q Consensus 30 inltldtvmg-g~~~~l~ 46 (334)
+-++||.|-+ |+|+||.
T Consensus 120 ~~v~lD~~~~lg~f~EiE 137 (183)
T 2een_A 120 VTITLDEVEGLGKFIEIE 137 (183)
T ss_dssp EEEEEEEETTTEEEEEEE
T ss_pred EEEEEEeecCCeeEEEEE
Confidence 4689999987 8998876
No 6
>3n10_A Adenylate cyclase 2; CYTH domain, antiparallel barrel, product complex, cyclic AM; HET: CMP; 1.60A {Yersinia pestis} PDB: 3n0z_A* 3n0y_A* 2fjt_A
Probab=9.16 E-value=1.6e+02 Score=22.64 Aligned_cols=17 Identities=35% Similarity=0.872 Sum_probs=13.8
Q ss_pred EEeeeeeeec-cceeeec
Q psy5195 30 INLTLDTVMG-GEYAELQ 46 (334)
Q Consensus 30 inltldtvmg-g~~~~l~ 46 (334)
+.++||+|.+ |+|+|+.
T Consensus 121 ~~v~lD~v~~lG~f~EiE 138 (179)
T 3n10_A 121 FHITVDHLTGLGDFAEIA 138 (179)
T ss_dssp EEEEEEEETTTEEEEEEE
T ss_pred EEEEEEeccCCCcEEEEE
Confidence 4688999985 8998875
No 7
>3bpo_A Interleukin 13; IL4, IL13, IL4R, IL13R, cytokine, glycoprotein, IM response, membrane, phosphoprotein, secreted; HET: NAG; 3.00A {Homo sapiens} PDB: 1ijz_A 1ik0_A 3g6d_A 3l5w_I 3l5x_A* 3l5y_A 1ga3_A
Probab=8.97 E-value=78 Score=26.38 Aligned_cols=31 Identities=32% Similarity=0.535 Sum_probs=21.2
Q ss_pred cCCCccCCCceecccccccccccccccCcch
Q psy5195 48 VGPPLINTPGVWGVNGAYTGAYNTGVNGLSN 78 (334)
Q Consensus 48 ~gpp~in~~gvw~v~~~~~gay~t~~~~l~~ 78 (334)
---||.|..=||+||-...+.|-.|...|.|
T Consensus 24 qK~~LCNGSMVWSVnlt~a~~~C~AleSL~N 54 (127)
T 3bpo_A 24 QKAPLCNGSMVWSINLTTAGMYCAALESLIN 54 (127)
T ss_dssp --CCSGGGCCEECCC---CCCSHHHHHTTTT
T ss_pred ccCCccCCceEEEEecccchhHHHHHHHhcc
Confidence 3458889999999999988888877665544
No 8
>2dt7_B Splicing factor 3 subunit 1; structure genomics, SF3A120, SF3A60, SURP domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.217.1.1
Probab=8.80 E-value=2.2e+02 Score=21.24 Aligned_cols=17 Identities=41% Similarity=0.874 Sum_probs=7.4
Q ss_pred CCCCCCCCCCCCCCCcC
Q psy5195 257 PVLPPAPVPYIPPPPVI 273 (334)
Q Consensus 257 pvlppapvpyippppvi 273 (334)
|.-||.+..++-+||-|
T Consensus 11 p~~Pp~~~~f~~~pp~i 27 (85)
T 2dt7_B 11 PKEPPPEFEFIADPPSI 27 (85)
T ss_dssp SCCCCCCSCCCSSCSSC
T ss_pred CCCcCCCceeccCCCCC
Confidence 33344444444444443
No 9
>1wa7_B TIP, hypothetical 28.7 kDa protein in DHFR 3'region (ORF1); SH3 domain, ligand, tyrosine kinase, signal transduction, LYN; NMR {Saimiriine herpesvirus 2}
Probab=8.36 E-value=1.8e+02 Score=18.76 Aligned_cols=6 Identities=50% Similarity=0.960 Sum_probs=2.3
Q ss_pred CCCCCC
Q psy5195 275 PPVLPQ 280 (334)
Q Consensus 275 ppvlpq 280 (334)
||.||.
T Consensus 7 ~P~LPp 12 (26)
T 1wa7_B 7 TPPLPP 12 (26)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 333443
No 10
>1yem_A Hypothetical protein; structural genomics, southeast collaboratory for structural genomics, secsg, protein structure initiative, PSI; 2.30A {Pyrococcus furiosus} SCOP: d.63.1.2
Probab=6.85 E-value=2.3e+02 Score=22.48 Aligned_cols=16 Identities=25% Similarity=0.819 Sum_probs=0.0
Q ss_pred EEeeeeeeec-cceeee
Q psy5195 30 INLTLDTVMG-GEYAEL 45 (334)
Q Consensus 30 inltldtvmg-g~~~~l 45 (334)
+-++||.|-| |+|+||
T Consensus 118 ~~i~lD~~~~lG~f~EI 134 (179)
T 1yem_A 118 VTLEVNRVEGIGDFVDI 134 (179)
T ss_dssp EEEEEEEETTTEEEEEE
T ss_pred EEEEEEecCCCCCEEEE
Done!