Query psy5195
Match_columns 334
No_of_seqs 2 out of 4
Neff 1.2
Searched_HMMs 13730
Date Fri Aug 16 19:46:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5195.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/5195hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1yema_ d.63.1.2 (A:) Hypothet 11.6 55 0.004 23.2 2.1 18 30-47 110-128 (163)
2 d2dt7b1 a.217.1.1 (B:134-217) 9.3 1E+02 0.0074 21.0 2.8 11 261-271 6-16 (84)
3 d1rl6a2 d.141.1.1 (A:82-170) R 8.9 60 0.0044 22.9 1.4 25 303-327 28-52 (89)
4 d2zjre1 d.141.1.1 (E:83-172) R 8.7 75 0.0054 22.4 1.9 25 303-327 28-52 (90)
5 d2j01h2 d.141.1.1 (H:83-171) R 8.2 91 0.0066 22.0 2.2 25 303-327 28-52 (89)
6 d2qamg2 d.141.1.1 (G:82-176) R 7.8 75 0.0055 22.7 1.6 25 303-327 28-52 (95)
7 d1uxya2 d.146.1.1 (A:201-342) 6.9 66 0.0048 23.7 0.9 31 285-315 27-62 (142)
8 d1tbaa_ a.15.1.1 (A:) TAF(II)2 5.9 87 0.0064 22.0 1.0 11 167-177 27-37 (67)
9 d1hcza2 b.84.2.2 (A:168-230) C 5.7 1.8E+02 0.013 19.6 2.5 27 31-57 24-51 (63)
10 d2ixma1 a.268.1.1 (A:23-322) S 5.4 83 0.006 26.4 0.7 17 44-65 178-194 (300)
No 1
>d1yema_ d.63.1.2 (A:) Hypothetical protein PF0863 {Pyrococcus furiosus [TaxId: 2261]}
Probab=11.64 E-value=55 Score=23.17 Aligned_cols=18 Identities=22% Similarity=0.726 Sum_probs=14.4
Q ss_pred EEeeeeeeec-cceeeecc
Q psy5195 30 INLTLDTVMG-GEYAELQP 47 (334)
Q Consensus 30 inltldtvmg-g~~~~l~p 47 (334)
+.++||+|-| |.|+|+.=
T Consensus 110 ~~i~lD~v~~lg~f~EiE~ 128 (163)
T d1yema_ 110 VTLEVNRVEGIGDFVDIEV 128 (163)
T ss_dssp EEEEEEEETTTEEEEEEEE
T ss_pred EEEEEEeeCCCCcEEEEEE
Confidence 4689999985 99998763
No 2
>d2dt7b1 a.217.1.1 (B:134-217) Splicing factor 3 subunit 1, SF3A1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.25 E-value=1e+02 Score=20.98 Aligned_cols=11 Identities=45% Similarity=0.788 Sum_probs=5.1
Q ss_pred CCCCCCCCCCC
Q psy5195 261 PAPVPYIPPPP 271 (334)
Q Consensus 261 papvpyipppp 271 (334)
+..+|..|||.
T Consensus 6 ~~~~p~~pPp~ 16 (84)
T d2dt7b1 6 ETIVPKEPPPE 16 (84)
T ss_dssp CCCCSCCCCCC
T ss_pred cCCCCCCCCCC
Confidence 34445555443
No 3
>d1rl6a2 d.141.1.1 (A:82-170) Ribosomal protein L6 {Bacillus stearothermophilus [TaxId: 1422]}
Probab=8.86 E-value=60 Score=22.93 Aligned_cols=25 Identities=32% Similarity=0.618 Sum_probs=18.4
Q ss_pred CCCeeeeEeccceeecCCCceeeec
Q psy5195 303 SHPVGLVTRSSTKYQIPAPTKLFVD 327 (334)
Q Consensus 303 shpvglvtrsstkyqipaptklfvd 327 (334)
|||+-+-.-+.-+..+|.||++.+.
T Consensus 28 SH~I~~~iP~~i~v~~~~~t~i~i~ 52 (89)
T d1rl6a2 28 SHPVEIEPEEGLEIEVPSQTKIIVK 52 (89)
T ss_dssp SSCEEECCCTTEEEEEEETTEEEEE
T ss_pred cceEEEeCCCCcEEEecCCceeEEE
Confidence 7888777777777777778877653
No 4
>d2zjre1 d.141.1.1 (E:83-172) Ribosomal protein L6 {Deinococcus radiodurans [TaxId: 1299]}
Probab=8.73 E-value=75 Score=22.43 Aligned_cols=25 Identities=32% Similarity=0.627 Sum_probs=19.9
Q ss_pred CCCeeeeEeccceeecCCCceeeec
Q psy5195 303 SHPVGLVTRSSTKYQIPAPTKLFVD 327 (334)
Q Consensus 303 shpvglvtrsstkyqipaptklfvd 327 (334)
|||+-+-.-..-+..+|.||.+.+.
T Consensus 28 SH~i~~~iP~~I~v~~~~~t~i~i~ 52 (90)
T d2zjre1 28 SHPVIIEPPAGVTFAVPEPTRIDVS 52 (90)
T ss_dssp SSCCBCCCCTTEEEECSSTTEEEEE
T ss_pred eeeeeeecCCCeEEEecCCCEEEEE
Confidence 7888887777778888888887763
No 5
>d2j01h2 d.141.1.1 (H:83-171) Ribosomal protein L6 {Thermus thermophilus [TaxId: 274]}
Probab=8.24 E-value=91 Score=21.98 Aligned_cols=25 Identities=32% Similarity=0.639 Sum_probs=20.0
Q ss_pred CCCeeeeEeccceeecCCCceeeec
Q psy5195 303 SHPVGLVTRSSTKYQIPAPTKLFVD 327 (334)
Q Consensus 303 shpvglvtrsstkyqipaptklfvd 327 (334)
|||+-+..-..-+..+|.||++.+.
T Consensus 28 SH~I~~~iP~~I~v~~~~~t~i~i~ 52 (89)
T d2j01h2 28 SHPVVVEPPEGITFEVPEPTRVRVS 52 (89)
T ss_dssp SSCEEECCCTTEEEECSSSSCEEEE
T ss_pred cccccccCCCCeEEEecCCCEEEEE
Confidence 7888888777788888888887653
No 6
>d2qamg2 d.141.1.1 (G:82-176) Ribosomal protein L6 {Escherichia coli [TaxId: 562]}
Probab=7.77 E-value=75 Score=22.72 Aligned_cols=25 Identities=24% Similarity=0.401 Sum_probs=19.5
Q ss_pred CCCeeeeEeccceeecCCCceeeec
Q psy5195 303 SHPVGLVTRSSTKYQIPAPTKLFVD 327 (334)
Q Consensus 303 shpvglvtrsstkyqipaptklfvd 327 (334)
|||+-+..-..-+..+|.||.+.+.
T Consensus 28 SH~i~~~iP~gI~v~~~~~t~i~i~ 52 (95)
T d2qamg2 28 SHPVDHQLPAGITAECPTQTEIVLK 52 (95)
T ss_dssp SSCCCEECCSSEECCCSSTTCCCCE
T ss_pred ceeceecCCCCcEEEecCCCEEEEE
Confidence 7888887777777888888877653
No 7
>d1uxya2 d.146.1.1 (A:201-342) Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=6.85 E-value=66 Score=23.66 Aligned_cols=31 Identities=29% Similarity=0.501 Sum_probs=20.9
Q ss_pred eeeccCCceecccc-----ccCCCCCeeeeEeccce
Q psy5195 285 SGVFSPNPVITKNY-----QPYPSHPVGLVTRSSTK 315 (334)
Q Consensus 285 sgvfspnpvitkny-----qpypshpvglvtrsstk 315 (334)
.|-|--||+|++.. +-+|+-|.....-.++|
T Consensus 27 ~GSfFKNPii~~~~~~~l~~~~~~~~~~~~~~~~~K 62 (142)
T d1uxya2 27 AGAFFKNPVVSAETAKALLSQFPTAPNYPQADGSVK 62 (142)
T ss_dssp EEESBCCCEECHHHHHHHHHHSTTCCEEECTTSCEE
T ss_pred cCccccCCcccHHHHHHHHHhCCcccccccCCCCcc
Confidence 47788899998652 45777777665554444
No 8
>d1tbaa_ a.15.1.1 (A:) TAF(II)230 TBP-binding fragment {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=5.95 E-value=87 Score=21.98 Aligned_cols=11 Identities=55% Similarity=0.842 Sum_probs=9.0
Q ss_pred ecCCCCCccce
Q psy5195 167 YDDGLGHGGSI 177 (334)
Q Consensus 167 yddglghgg~i 177 (334)
=|||-||||++
T Consensus 27 Dd~~~g~~~s~ 37 (67)
T d1tbaa_ 27 DDDGEGRGGTG 37 (67)
T ss_dssp SSCCCSSSCSS
T ss_pred ccccccccccc
Confidence 36899999986
No 9
>d1hcza2 b.84.2.2 (A:168-230) Cytochrome f, small domain {Turnip (Brassica rapa) [TaxId: 3711]}
Probab=5.67 E-value=1.8e+02 Score=19.64 Aligned_cols=27 Identities=19% Similarity=0.337 Sum_probs=19.2
Q ss_pred Eeeeeee-eccceeeecccCCCccCCCc
Q psy5195 31 NLTLDTV-MGGEYAELQPVGPPLINTPG 57 (334)
Q Consensus 31 nltldtv-mgg~~~~l~p~gpp~in~~g 57 (334)
.+|+.+- =|-+.+|.-|+||-||-..|
T Consensus 24 ~vtI~~~~dg~~v~~~IP~GpeLiVseG 51 (63)
T d1hcza2 24 EITIVDASNERQVIDIIPRGLELLVSEG 51 (63)
T ss_dssp EEEEEETTTTEEEEEEECTTCCBCCCTT
T ss_pred EEEEEecCCCCEEEEecCCCCeEEEcCC
Confidence 3556433 34468999999999996655
No 10
>d2ixma1 a.268.1.1 (A:23-322) Serine/threonine-protein phosphatase 2A regulatory subunit B', PTPA {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.37 E-value=83 Score=26.42 Aligned_cols=17 Identities=35% Similarity=1.007 Sum_probs=13.2
Q ss_pred eecccCCCccCCCceecccccc
Q psy5195 44 ELQPVGPPLINTPGVWGVNGAY 65 (334)
Q Consensus 44 ~l~p~gpp~in~~gvw~v~~~~ 65 (334)
.|.||| .-|||++|.-.
T Consensus 178 ~LEPAG-----SHGvWgLDDy~ 194 (300)
T d2ixma1 178 RMEPAG-----SQGVWGLDDFQ 194 (300)
T ss_dssp TCEESS-----CCGGGCSSSSC
T ss_pred ccccCC-----CCCCCcccccc
Confidence 377998 67999999643
Done!