RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5195
         (334 letters)



>d1jvra_ a.61.1.2 (A:) HTLV-II matrix protein {Human T-cell leukemia
           virus type 2 [TaxId: 11909]}
          Length = 137

 Score = 27.5 bits (61), Expect = 1.3
 Identities = 13/30 (43%), Positives = 13/30 (43%)

Query: 253 NPALPVLPPAPVPYIPPPPVITPPVLPQSP 282
           N   P  P APVP    P    PP  P SP
Sbjct: 91  NQVSPSAPAAPVPTPICPTTTPPPPPPPSP 120


>d1pd0a2 b.2.8.1 (A:133-215,A:553-646) Sec24 {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 177

 Score = 25.9 bits (57), Expect = 5.3
 Identities = 11/34 (32%), Positives = 16/34 (47%)

Query: 258 VLPPAPVPYIPPPPVITPPVLPQSPVISGVFSPN 291
           + PP     +PPPP++ PP     P      SP+
Sbjct: 15  LPPPITDLTLPPPPLVIPPERMLVPSELSNASPD 48


>d1olra_ b.29.1.11 (A:) Family 12 endo-1,4-beta-glucanase
           (cellulase) catalytic domain {Humicola grisea [TaxId:
           5527]}
          Length = 224

 Score = 25.9 bits (57), Expect = 6.7
 Identities = 13/54 (24%), Positives = 22/54 (40%)

Query: 58  VWGVNGAYTGAYNTGVNGLSNNGIQALNTYGDRGYGAGGYTDANGFYHGNLGTK 111
           +WG + A +G   T ++G +N GIQ    +  +G      +          G K
Sbjct: 23  LWGKDTATSGWQCTYLDGTNNGGIQWSTAWEWQGAPDNVKSYPYVGKQIQRGRK 76


>d2pbla1 c.69.1.2 (A:1-261) Uncharacterized protein TM1040_2492
           {Silicibacter sp. tm1040 [TaxId: 292414]}
          Length = 261

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 8/42 (19%), Positives = 10/42 (23%)

Query: 173 HGGSIQYGSKDHRSRDGVGNAFGGAYHDAHLKTNAHGNKQNF 214
           HGG      K   S   VG    G              + + 
Sbjct: 69  HGGYWMAFDKSSWSHLAVGALSKGWAVAMPSYELCPEVRISE 110


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.313    0.138    0.426 

Gapped
Lambda     K      H
   0.267   0.0465    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,288,388
Number of extensions: 63019
Number of successful extensions: 125
Number of sequences better than 10.0: 1
Number of HSP's gapped: 119
Number of HSP's successfully gapped: 22
Length of query: 334
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 248
Effective length of database: 1,226,816
Effective search space: 304250368
Effective search space used: 304250368
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 53 (24.8 bits)