Query psy5196
Match_columns 252
No_of_seqs 118 out of 723
Neff 7.7
Searched_HMMs 29240
Date Fri Aug 16 19:46:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5196.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5196hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f3t_A Protein argonaute-2; hy 100.0 4.6E-46 1.6E-50 370.6 19.5 217 19-243 19-242 (861)
2 4f1n_A Kpago; argonaute, RNAI, 100.0 3.9E-38 1.3E-42 315.7 14.8 216 21-242 13-319 (1046)
3 1u04_A Argonaute, hypothetical 99.7 8.8E-18 3E-22 164.5 8.5 152 41-240 3-163 (771)
4 1yvu_A Hypothetical protein AQ 99.4 7.6E-13 2.6E-17 129.2 7.8 117 94-239 50-175 (706)
5 3ho1_A Argonaute; argonaute, p 97.3 0.016 5.3E-07 56.3 18.4 174 40-240 5-186 (685)
6 1r6z_P Chimera of maltose-bind 35.2 19 0.00065 32.8 2.6 31 221-251 375-406 (509)
7 2lic_A Vitellogenin; lipid tra 35.0 14 0.00049 20.5 1.0 9 6-14 15-23 (35)
8 2jr3_A Pelovaterin; beta-defen 34.4 14 0.00048 21.3 0.9 9 11-19 4-12 (42)
9 3u85_B Histone-lysine N-methyl 25.2 31 0.0011 17.2 1.1 7 26-34 4-10 (21)
10 3kvp_A Uncharacterized protein 21.9 40 0.0014 22.5 1.6 22 42-64 25-46 (72)
No 1
>4f3t_A Protein argonaute-2; hydrolase/gene regulation, RNAI, slicer, hydrolase-RNA; 2.25A {Homo sapiens} PDB: 4ei1_A 4ei3_A* 1r4k_A 1si2_A 1si3_A
Probab=100.00 E-value=4.6e-46 Score=370.61 Aligned_cols=217 Identities=30% Similarity=0.517 Sum_probs=181.4
Q ss_pred CCCCCCccCCCCCCCCCCCCCCeEEEEeeeeeeeecCCCeeEEEeEEEeCCC-CChhhhHHHHHHHHHHhC----CCCCe
Q psy5196 19 AGSKGLYQIPRRSNKDGGTLGRRTQVDTNHFAITFKNPNLVIFHYDVAIDPD-KPVRYMRPVMQKVAREYF----PNSPC 93 (252)
Q Consensus 19 ~~~~~~~~~p~R~~P~~Gt~G~~i~l~tN~f~i~~~~p~~~iy~Y~V~i~P~-~~~~~~r~i~~~l~~~~~----~~~~~ 93 (252)
.++...+.+|+| |++|+.|++|+|+||||+|++ |++.+|||+|+|+|+ .+++++|+||+.+++++. .+..+
T Consensus 19 ~~~~~~~~~p~R--Pg~Gt~G~~i~l~aN~F~v~~--~~~~ly~Y~V~i~p~~~~~~~~r~i~~~l~~~~~~~~~~~~~~ 94 (861)
T 4f3t_A 19 PIQGYAFKPPPR--PDFGTSGRTIKLQANFFEMDI--PKIDIYHYELDIKPEKCPRRVNREIVEHMVQHFKTQIFGDRKP 94 (861)
T ss_dssp ------CCCCBC--CCCCCCSEEEEEEESEEEEEC--CSCEEEEEEEEEESCSCCHHHHHHHHHHHHHHSCCCCCTTCCC
T ss_pred ccccccccCCCC--CCCCCCCcEEEEEeeeEEEEC--CCCceeeeeEEeCCCcCcHHHHHHHHHHHHHHhhhhhhcCceE
Confidence 345567899999 999999999999999999997 678999999999998 577889999999988763 23456
Q ss_pred EecCCcceEecCCCCCCCCCceEEEEeeCCCCccceEEEEEEeecccChhhHHHHHhcCCC-ChhHHHHHHHHHHhCCCc
Q psy5196 94 GYDGKKNLFSKGTLPFGTAMNCTVSIFDEERMKDKEYKVEIKKAQEISFASIVEFMRTGVN-RPQIAIQALDVVLREPCS 172 (252)
Q Consensus 94 ~yDG~~~lyS~~~L~~~~~~~~~~~v~~~~~~~~~~~~v~I~~~~~i~l~~l~~~l~~~~~-~~~~~iq~Lnivlr~~~~ 172 (252)
||||+++|||+++||.++. ..++.+..+++++++.|+|+|++++++++++|.+|+.|... .+.++||+||||||+.++
T Consensus 95 afDG~~~l~s~~~L~~~~~-~~~~~v~~~~~~~~~~~~V~I~~~~~i~l~~L~~~l~g~~~~~~~~~iq~Lniilr~~~~ 173 (861)
T 4f3t_A 95 VFDGRKNLYTAMPLPIGRD-KVELEVTLPGEGKDRIFKVSIKWVSCVSLQALHDALSGRLPSVPFETIQALDVVMRHLPS 173 (861)
T ss_dssp EECSSSEEEESSCCSCSSC-EEEEECCC-------CEEEEEEEEEEEEHHHHHHHHHTCSSSCCHHHHHHHHHHHHHHHH
T ss_pred EEcCcceEEECCcCCCCCc-ceEEEEecCCCCCCcEEEEEEEEeeecCHHHHHHHhcCCCCCCcHHHHHHHHHHHHhhcc
Confidence 9999999999999997654 44666666555567899999999999999999999999877 778999999999999888
Q ss_pred CCCCeeeecccccCCCCCCCcccCCCcEEEeeeeeeeeeec-CceEEEeecCccccCCCCcHHHHHHHHhcC
Q psy5196 173 LNANFVRVGRSYFSPPDPNRLVDLGDGLHLWNGFYQSAGIG-WRPYLNVDVAHKGFPEEKSVIKVIDEICRG 243 (252)
Q Consensus 173 ~~~~~~~vGr~fF~~~~~~~~~~l~~GlE~w~Gf~~SvR~~-~~l~LNvDvs~~~F~~~~~l~d~i~e~~~~ 243 (252)
. ++..+||+||+ +..+...+|++|+|+|+|||+||||+ ++|+||||++|++||++++|+|+|.++++.
T Consensus 174 ~--~~~~vGR~Ff~-~~~~~~~~lg~Gle~w~G~~~Svr~~~~~l~LnvDvs~~~F~~~~~v~d~~~~~~~~ 242 (861)
T 4f3t_A 174 M--RYTPVGRSFFT-ASEGCSNPLGGGREVWFGFHQSVRPSLWKMMLNIDVSATAFYKAQPVIEFVCEVLDF 242 (861)
T ss_dssp H--HSEEETTEEEC-CC---CCEEETTEEEEEEEEEEEEECSSSEEEEEEEEEEEEECCEEHHHHHHHHHTC
T ss_pred c--cccccCCCccC-CCCCceeccCCCEEEEeceeEEEEecCCccEEeecccceeEeeCCcHHHHHHHHhcc
Confidence 7 89999999998 54344568899999999999999999 999999999999999999999999999864
No 2
>4f1n_A Kpago; argonaute, RNAI, RNAse H, RNA binding protein-RNA complex; 3.19A {Vanderwaltozyma polyspora}
Probab=100.00 E-value=3.9e-38 Score=315.69 Aligned_cols=216 Identities=16% Similarity=0.220 Sum_probs=172.2
Q ss_pred CCCCccCCCCCCCCCCCCCCeEEEEeeeeeeeecCCC--------------------eeEEEeEEEeCCCC---------
Q psy5196 21 SKGLYQIPRRSNKDGGTLGRRTQVDTNHFAITFKNPN--------------------LVIFHYDVAIDPDK--------- 71 (252)
Q Consensus 21 ~~~~~~~p~R~~P~~Gt~G~~i~l~tN~f~i~~~~p~--------------------~~iy~Y~V~i~P~~--------- 71 (252)
.+..+.+|.| |+|||.|++|.|+||||.+.+. ++ ..||+|+|+|.|+.
T Consensus 13 ~~~~~~~p~R--p~yGt~G~~v~l~aN~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~i~~~~~~~~~~~~~~~ 89 (1046)
T 4f1n_A 13 THAIYKVENR--HDYGTKGTKVDILTNHILLAVG-NDVPTEKIDKELVPKLDGWWKTAFIFTYHIDFKPQQKGPPRRGKP 89 (1046)
T ss_dssp CCCCCCCCBC--CCCCCCSEEEEEEESEEEEECC-TTSCTTTSCTTTSCCCCSTTTSCEEEEEEEEEC------------
T ss_pred ccccccCCCC--CCCCCCCcEEEEEeeEEEEecC-CCccccccccccccccccccccceEEEEEEEEccccccccccccc
Confidence 4568999999 9999999999999999999996 33 38999999998852
Q ss_pred ------ChhhhHHHHHHHHHHh--C-C-CCCeEecCCcceEecCCCC---CCCCCceEEEEeeC-------CC-------
Q psy5196 72 ------PVRYMRPVMQKVAREY--F-P-NSPCGYDGKKNLFSKGTLP---FGTAMNCTVSIFDE-------ER------- 124 (252)
Q Consensus 72 ------~~~~~r~i~~~l~~~~--~-~-~~~~~yDG~~~lyS~~~L~---~~~~~~~~~~v~~~-------~~------- 124 (252)
.++++++|+..++++. . . ...+||||+++|||..+|| ...+ .++|... ++
T Consensus 90 ~~~~~~~~~k~~~ii~~ll~e~~~~~~~~~~ia~d~~~~L~s~~~L~~~~l~~~---~~~v~~~~~~~~~~~~~~~~~~~ 166 (1046)
T 4f1n_A 90 VPPQELSKPKKYELIEALLDEDEILYKYRDRIAFNGEDTIYSHVPLEEFTLFDG---CWEVSNKQKKKVVPGMGAPSNKA 166 (1046)
T ss_dssp -----CCHHHHHHHHHHHHHSCTTTGGGTTSEEECSSSEEEESSCGGGSTTCTT---CCC--------------------
T ss_pred CcccccchhHHHHHHHHHHHhcchhhhcCCceeecCccceEECCcCCccccCCC---ceEEeccccccccCCcccccccc
Confidence 2567889999988772 2 1 5679999999999999999 3333 2333333 21
Q ss_pred ---------CccceEEEEEEeecccChhhHHHHHhcCCCC---h---hHHHHHHHHHHhCCCcCC-CCeeeeccc-ccCC
Q psy5196 125 ---------MKDKEYKVEIKKAQEISFASIVEFMRTGVNR---P---QIAIQALDVVLREPCSLN-ANFVRVGRS-YFSP 187 (252)
Q Consensus 125 ---------~~~~~~~v~I~~~~~i~l~~l~~~l~~~~~~---~---~~~iq~Lnivlr~~~~~~-~~~~~vGr~-fF~~ 187 (252)
.++++|+|+|+++++|++++|.+|+.++... . .+++|+||+||++.+... .....+|++ ||..
T Consensus 167 ~~~~~~~~~~~~~~~~V~i~~~~~i~l~dL~~~l~~~~~~~~~~~~~~~~i~aL~~il~~~~~~~~~~i~~vg~nkFF~~ 246 (1046)
T 4f1n_A 167 SLQKKIDPELEEMVSQITLKFSGKVGLKDIYNDTTTQDTEVQESRMSAIDKTCLLSLLGAKFMSTDDLIFQVQGNKFFIF 246 (1046)
T ss_dssp -----------CGGGGEEEEEEEEEEGGGGGSCSSCCCTTHHHHHHTCHHHHHHHHHHHHHHHCSSSCEEEETTTEEEEC
T ss_pred cccccccccccCceEEEEEEEeeecCHHHHHHHHcCCCccccccccchHHHHHHHHHHhhhhhhcCCceEEcCCcccccC
Confidence 2567899999999999999999999999762 2 689999999999987653 233556655 8874
Q ss_pred CCCCCcccCCCcEEEeeeeeeeeeec-CceEEEeecCccccCCC-----------------CcHHHHHHHHhc
Q psy5196 188 PDPNRLVDLGDGLHLWNGFYQSAGIG-WRPYLNVDVAHKGFPEE-----------------KSVIKVIDEICR 242 (252)
Q Consensus 188 ~~~~~~~~l~~GlE~w~Gf~~SvR~~-~~l~LNvDvs~~~F~~~-----------------~~l~d~i~e~~~ 242 (252)
...+...+|++|+|+|+|||+||||+ +||+||||++|++||++ ++|+|+|.++++
T Consensus 247 ~~~~~~~~Lg~Gle~wrGffqSvRpa~~rLlLNvdvs~~aF~k~~~~~~~~~~~~~~~~~p~~lid~l~~~~~ 319 (1046)
T 4f1n_A 247 NNFAKAIPFQIGGYLLQGFTVSLTHVYGGVALNTVSVPAPFIKHTKYLPGDPRFKNNEKEQFTLMDWIIECYH 319 (1046)
T ss_dssp STTCCEEECSSSEEEEEEEEEEEEEETTEEEEEEEEEEEEEECCSSSCTTSHHHHHCTTCCCCHHHHHHHHHH
T ss_pred CCCCccccCCCcEEEEEeEeeeEEecCCceEEEEeccceeEEeccccCcccccccccccCCccHHHHHHHHhc
Confidence 43345689999999999999999999 99999999999999984 799999999876
No 3
>1u04_A Argonaute, hypothetical protein PF0537; RNAI, silencing, PIWI, PAZ, RISC, slicer, RNAse H hydrolase-gene regulation complex; 2.25A {Pyrococcus furiosus} SCOP: b.34.14.1 c.55.3.10 PDB: 1z25_A 1z26_A
Probab=99.71 E-value=8.8e-18 Score=164.47 Aligned_cols=152 Identities=13% Similarity=0.107 Sum_probs=115.5
Q ss_pred eEEEEeeeeeeee--cCCCeeEEEeEEEeCCCCChhhhHHHHHHHHHHhCCCCCeEecCCc-ceEecCCCCCCCCCceEE
Q psy5196 41 RTQVDTNHFAITF--KNPNLVIFHYDVAIDPDKPVRYMRPVMQKVAREYFPNSPCGYDGKK-NLFSKGTLPFGTAMNCTV 117 (252)
Q Consensus 41 ~i~l~tN~f~i~~--~~p~~~iy~Y~V~i~P~~~~~~~r~i~~~l~~~~~~~~~~~yDG~~-~lyS~~~L~~~~~~~~~~ 117 (252)
+..|.+|||+|.. . |+ .+|||+|++.|+....++..++..+...+ + .++|||.. .||++++|+.
T Consensus 3 ~~~~~~n~~~~~~~~~-~~-~~y~y~v~~~p~~~~~~~~~~~~~~~~~~--g-~~~fdg~~~~l~~~~~l~~-------- 69 (771)
T 1u04_A 3 KAIVVINLVKINKKII-PD-KIYVYRLFNDPEEELQKEGYSIYRLAYEN--V-GIVIDPENLIIATTKELEY-------- 69 (771)
T ss_dssp EEEEEBSEEEBCGGGS-CS-CEEEEEC------------CCHHHHHHHT--T-EEEEETTTTEEEESSCCCC--------
T ss_pred ceEEEeeeEEEecccC-CC-eeEEEEeecCChHHHHHHHHHHHHHHhhc--C-cEEecCcceeeeccceecc--------
Confidence 5789999999998 6 88 99999999999854336667777777765 4 88999953 2999999962
Q ss_pred EEeeCCCCccceEEEEEEeecccChhhHHHHHhcCCCChhHHHHHHHHHHhCCCcCCCC-----eeeecccccCCCCCCC
Q psy5196 118 SIFDEERMKDKEYKVEIKKAQEISFASIVEFMRTGVNRPQIAIQALDVVLREPCSLNAN-----FVRVGRSYFSPPDPNR 192 (252)
Q Consensus 118 ~v~~~~~~~~~~~~v~I~~~~~i~l~~l~~~l~~~~~~~~~~iq~Lnivlr~~~~~~~~-----~~~vGr~fF~~~~~~~ 192 (252)
++..+.|+++.+++++ +|++|+++|+.+.. .+ +..+||+||+ |
T Consensus 70 --------~~~~~~~~~~~~~~~~------------------~~~~n~i~r~~l~~-~~~~~~~l~~~~r~~~~-~---- 117 (771)
T 1u04_A 70 --------EGEFIPEGEISFSELR------------------NDYQSKLVLRLLKE-NGIGEYELSKLLRKFRK-P---- 117 (771)
T ss_dssp --------SSCCEEEEEECGGGSC------------------HHHHHHHHHHHHHH-TTCSHHHHHHHHTTTSC-C----
T ss_pred --------CCCeEEEEEEEcceec------------------HHHHHHHHHHHHHH-cccchHHHHHHhhhcCC-C----
Confidence 1235888888888774 67899999998754 24 7889999998 4
Q ss_pred cccCCCcEEEeeeeeeeeeec-CceEEEeecCccccCCCCcHHHHHHHH
Q psy5196 193 LVDLGDGLHLWNGFYQSAGIG-WRPYLNVDVAHKGFPEEKSVIKVIDEI 240 (252)
Q Consensus 193 ~~~l~~GlE~w~Gf~~SvR~~-~~l~LNvDvs~~~F~~~~~l~d~i~e~ 240 (252)
..+ +.+++|+|+-+|||.. ++++||+|++|++++ .+||+|+|.+.
T Consensus 118 -~~~-~~~~~~~~~~tsi~~~e~~~ll~~di~hkv~r-~~t~~d~~~~~ 163 (771)
T 1u04_A 118 -KTF-GDYKVIPSVEMSVIKHDEDFYLVIHIIHQIQS-MKTLWELVNKD 163 (771)
T ss_dssp -EEE-TTEEEEEEEEEEEEECSSCEEEEEEEEEEEEE-SSCHHHHTTTC
T ss_pred -ccc-cccEEEECceeeEEecCCceEEEEEeeeeEee-hhHHHHHHHHH
Confidence 233 6788999999999999 999999999999996 58999999764
No 4
>1yvu_A Hypothetical protein AQ_1447; RNAse H fold, RNA binding protein, gene regulation; 2.90A {Aquifex aeolicus} SCOP: b.34.14.1 c.55.3.10 PDB: 2f8s_A 2f8t_A 2nub_A
Probab=99.36 E-value=7.6e-13 Score=129.19 Aligned_cols=117 Identities=9% Similarity=0.067 Sum_probs=90.7
Q ss_pred EecCCcceEecCCCCCCCCCceEEEEeeCCCCccceEEEEEEeecccC----hhhHHHHHhcCCCChhHHHHHHHHHHhC
Q psy5196 94 GYDGKKNLFSKGTLPFGTAMNCTVSIFDEERMKDKEYKVEIKKAQEIS----FASIVEFMRTGVNRPQIAIQALDVVLRE 169 (252)
Q Consensus 94 ~yDG~~~lyS~~~L~~~~~~~~~~~v~~~~~~~~~~~~v~I~~~~~i~----l~~l~~~l~~~~~~~~~~iq~Lnivlr~ 169 (252)
.|.-..-.|+..+... + +.-+... +| . .|+|++++++. . ...+++|+++.+|++
T Consensus 50 ~~~~~~~~~~~~~~~~--~---~~~~~~~-~~--~--~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~ 107 (706)
T 1yvu_A 50 TFRREDEFWCAGKVEK--D---TLYLTLS-NG--E--IVELKRVGEEEFRGFQ------------NERECQELFRDFLTK 107 (706)
T ss_dssp EEEETTEEEESSCCTT--C---CCEEEEC-SS--S--CEEEEECCCEECCCCS------------CHHHHHHHHHHHHHH
T ss_pred cccccccceecccccc--c---eEEEEcC-CC--C--EEEEEEEEEeeccCCC------------CCHHHHHHHHHHHHH
Confidence 4555556898888763 3 3333332 11 2 56699999887 4 357899999999997
Q ss_pred CCcCCCCeeeecccccCCCCCCCcccC---CCcEEEeeeeeeeeeec--CceEEEeecCccccCCCCcHHHHHHH
Q psy5196 170 PCSLNANFVRVGRSYFSPPDPNRLVDL---GDGLHLWNGFYQSAGIG--WRPYLNVDVAHKGFPEEKSVIKVIDE 239 (252)
Q Consensus 170 ~~~~~~~~~~vGr~fF~~~~~~~~~~l---~~GlE~w~Gf~~SvR~~--~~l~LNvDvs~~~F~~~~~l~d~i~e 239 (252)
. .. .+..+||+||+ +. .+..+ .++||+||||.+||+.. ++++||+|++|++. +.+||+|+|.+
T Consensus 108 ~-~l--~~~~igr~~~~-~~--~~~~i~~~~~~l~iwPG~~tsi~~~e~~~~~L~~DvshKvl-r~~Tvld~l~~ 175 (706)
T 1yvu_A 108 T-KV--KDKFISDFYKK-FR--DKITVQGKNRKIALIPEVNEKVLKSEEGYFLLHLDLKFRIQ-PFETLQTLLER 175 (706)
T ss_dssp T-CH--HHHHHHHHHHH-HH--HHHEEECSSCEEEEEEEEEEEEEEBSSSCEEEEEEEEEEEE-ESSCHHHHHHH
T ss_pred c-CC--hHhhhCccccC-cc--ccccccCCCCcEEEccCeEEEEEeccCCCeEEEEEeeeeec-ccchHHHHHHH
Confidence 7 33 66789999999 65 56667 57899999999999998 89999999999955 67999999998
No 5
>3ho1_A Argonaute; argonaute, protein-DNA-RNA complex, nucleic acid binding Pro RNA complex; 2.60A {Thermus thermophilus} PDB: 3dlb_A* 3dlh_A* 3f73_A* 3hm9_A 3hvr_A 3hxm_A* 3hk2_A 3hjf_A
Probab=97.30 E-value=0.016 Score=56.26 Aligned_cols=174 Identities=20% Similarity=0.155 Sum_probs=111.3
Q ss_pred CeEEEEeeeeeeeecC-CCeeEEEeEEEeCCCCChhhhHHHHHHHHHHhCCCCCeEecCCcceEecCCCCCCCCCceEEE
Q psy5196 40 RRTQVDTNHFAITFKN-PNLVIFHYDVAIDPDKPVRYMRPVMQKVAREYFPNSPCGYDGKKNLFSKGTLPFGTAMNCTVS 118 (252)
Q Consensus 40 ~~i~l~tN~f~i~~~~-p~~~iy~Y~V~i~P~~~~~~~r~i~~~l~~~~~~~~~~~yDG~~~lyS~~~L~~~~~~~~~~~ 118 (252)
.++.|+-|-|.++-.. ++.+.|.|++.+.|.+....-...+..+..+. +...+==| +.|.|..+ |..- ..|=.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~-~~~~--~~~~~ 78 (685)
T 3ho1_A 5 GKTEVFLNRFALRPLNPEELRPWRLEVVLDPPPGREEVYPLLAQVARRA--GGVTVRMG-DGLASWSP-PEVL--VLEGT 78 (685)
T ss_dssp CCEEEEEEEEEEEECCTTTSSCEEEEEEEESCCCTTTHHHHHHHHHHHT--CSSEEEET-TEEEESSC-TTTS--CCEEE
T ss_pred cceeEEEeeeecccCChhhCceeEEEEecCCCCCcchHHHHHHHHHHHh--CCeEEeec-CceecccC-chhh--hccch
Confidence 4578999999998553 35799999999998755555556677777765 44433335 67999877 5421 12333
Q ss_pred EeeCCCCccceEEEEEEeecccChhhHHHHHhcCCCChhHHHH-----HHHHHHhCCCcCCCCeeeecccccCCCCCCCc
Q psy5196 119 IFDEERMKDKEYKVEIKKAQEISFASIVEFMRTGVNRPQIAIQ-----ALDVVLREPCSLNANFVRVGRSYFSPPDPNRL 193 (252)
Q Consensus 119 v~~~~~~~~~~~~v~I~~~~~i~l~~l~~~l~~~~~~~~~~iq-----~Lnivlr~~~~~~~~~~~vGr~fF~~~~~~~~ 193 (252)
|.-. +....+.+.-.=.+.+|+.+=.+ .+++. .|+--|++. + +...-|.-.+- .. .
T Consensus 79 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~-~~--~- 139 (685)
T 3ho1_A 79 LARM--GQTYAYRLYPKGRRPLDPKDPGE---------RSVLSALARRLLQERLRRL-E---GVWVEGLAVYR-RE--H- 139 (685)
T ss_dssp EECS--SCEEEEEEEEEEECCCCTTSHHH---------HHHHHHHHHHHHHHHHHTC-S---SSEEETTEEEE-EE--E-
T ss_pred hccc--cCCcceeeeecccccCCCCChHH---------HHHHHHHHHHHHHHHHHhh-h---ceEEccEEEEe-ec--C-
Confidence 3321 23445777666667788753111 11222 334444444 2 22222322222 11 1
Q ss_pred ccCCCcEEEeeeeeeeeeec--CceEEEeecCccccCCCCcHHHHHHHH
Q psy5196 194 VDLGDGLHLWNGFYQSAGIG--WRPYLNVDVAHKGFPEEKSVIKVIDEI 240 (252)
Q Consensus 194 ~~l~~GlE~w~Gf~~SvR~~--~~l~LNvDvs~~~F~~~~~l~d~i~e~ 240 (252)
.-|.|.|+.+|+--.|.++ +++.|.||..|. |+.+.++.+++.+.
T Consensus 140 -~~~~~~~~~~g~~~~v~~~~~~~~~l~vd~~~r-~~~~~~~~~~l~~~ 186 (685)
T 3ho1_A 140 -ARGPGWRVLGGAVLDLWVSDSGAFLLEVDPAYR-ILCEMSLEAWLAQG 186 (685)
T ss_dssp -EEETTEEEEEEEEEEEEECSSSEEEEEEEEEEE-EEECSCHHHHHHHS
T ss_pred -CCCCceEEecceEEEEEECCCCcEEEEEeehee-ecChhhHHHHHHhC
Confidence 1289999999999999999 899999999998 56789999999873
No 6
>1r6z_P Chimera of maltose-binding periplasmic protein AN argonaute 2; deviant OB fold, RNAI, gene regulation; HET: MAL; 2.80A {Escherichia coli} SCOP: b.34.14.1 c.94.1.1
Probab=35.22 E-value=19 Score=32.81 Aligned_cols=31 Identities=19% Similarity=0.465 Sum_probs=24.9
Q ss_pred ecCccccCCCCcHHHHHHHHh-cCCCCCCCCC
Q psy5196 221 DVAHKGFPEEKSVIKVIDEIC-RGLPPELSDY 251 (252)
Q Consensus 221 Dvs~~~F~~~~~l~d~i~e~~-~~~~~~l~~~ 251 (252)
+...+.||++++|+|++.+++ +...|+|++.
T Consensus 375 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 406 (509)
T 1r6z_P 375 DISHKSFPISMPMIEYLERFSLKAKINNTTNL 406 (509)
T ss_dssp CSSCCCSSCEEEHHHHHHHHTTCSCCCTTCCG
T ss_pred hhhhhccCCCccHHHHHHHHhhccccCCcccc
Confidence 445678999999999999998 6677777753
No 7
>2lic_A Vitellogenin; lipid transport; HET: SEP; NMR {Apis mellifera}
Probab=35.01 E-value=14 Score=20.45 Aligned_cols=9 Identities=89% Similarity=0.774 Sum_probs=5.3
Q ss_pred CCCCccccc
Q psy5196 6 SSSSSSISS 14 (252)
Q Consensus 6 ~~~~~~~~~ 14 (252)
|.||||||+
T Consensus 15 stssssiss 23 (35)
T 2lic_A 15 STSSSSISS 23 (35)
T ss_dssp CSCSSCCST
T ss_pred ccccccccc
Confidence 455666665
No 8
>2jr3_A Pelovaterin; beta-defensin like peptide, chinese SOFT-shelled turtle eggshell, antibacterial peptide, eggshell matrix; NMR {Pelodiscus sinensis}
Probab=34.42 E-value=14 Score=21.31 Aligned_cols=9 Identities=33% Similarity=0.405 Sum_probs=6.8
Q ss_pred ccccccCCC
Q psy5196 11 SISSAASGA 19 (252)
Q Consensus 11 ~~~~~~~~~ 19 (252)
..||||||+
T Consensus 4 pssrcgsgg 12 (42)
T 2jr3_A 4 PSSRCGSGG 12 (42)
T ss_dssp CSCCTTTSS
T ss_pred ccccccCCC
Confidence 347999994
No 9
>3u85_B Histone-lysine N-methyltransferase MLL; menin, MEN1, JUND, ledgf, TPR, transcription, epigeneti cancer; 3.00A {Homo sapiens}
Probab=25.20 E-value=31 Score=17.23 Aligned_cols=7 Identities=29% Similarity=0.653 Sum_probs=4.5
Q ss_pred cCCCCCCCC
Q psy5196 26 QIPRRSNKD 34 (252)
Q Consensus 26 ~~p~R~~P~ 34 (252)
.||.| |+
T Consensus 4 rfpar--pg 10 (21)
T 3u85_B 4 RFPAR--PG 10 (26)
T ss_pred ccccC--CC
Confidence 46777 65
No 10
>3kvp_A Uncharacterized protein YMZC; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.40A {Bacillus subtilis}
Probab=21.89 E-value=40 Score=22.46 Aligned_cols=22 Identities=23% Similarity=0.543 Sum_probs=19.0
Q ss_pred EEEEeeeeeeeecCCCeeEEEeE
Q psy5196 42 TQVDTNHFAITFKNPNLVIFHYD 64 (252)
Q Consensus 42 i~l~tN~f~i~~~~p~~~iy~Y~ 64 (252)
++|--|+|.+.-. ...+||.|+
T Consensus 25 vqLe~nhFgv~e~-g~iKIykyd 46 (72)
T 3kvp_A 25 FPLEHNHFGVMED-GYIKIYEYN 46 (72)
T ss_dssp EECSTTEEEEEET-TEEEEEEEE
T ss_pred eeecCCEEEEEeC-CEEEEEEeC
Confidence 8888999999875 668999998
Done!