RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5196
         (252 letters)



>d1u04a1 b.34.14.1 (A:2-323) Argonaute homologue PF0537 {Pyrococcus
           furiosus [TaxId: 2261]}
          Length = 322

 Score = 39.4 bits (92), Expect = 2e-04
 Identities = 27/185 (14%), Positives = 51/185 (27%), Gaps = 48/185 (25%)

Query: 46  TNHFAITFKNPNLVIFHYDVAIDPDKPVRYMRPVMQKVAREYFPNSPCGYDGKKNLFSKG 105
            N   I  K     I+ Y +  DP++ ++     + ++A E          G        
Sbjct: 6   INLVKINKKIIPDKIYVYRLFNDPEEELQKEGYSIYRLAYENV--------GIVIDPE-N 56

Query: 106 TLPFGTAMNCTVSIFDEERMKDKEYKVEIKKAQEISFASIVEFMRTGVNRPQIAIQALDV 165
            +   T              K+ EY+ E     EISF        + +     +   L +
Sbjct: 57  LIIATT--------------KELEYEGEFIPEGEISF--------SELRNDYQSKLVLRL 94

Query: 166 VLREPCSLNANFVRVGRSYFSPPDPNRLVDLGDGLHLWNGFYQS-----AGIGWRPYLNV 220
           +            ++ R +     P    D      +      S            YL +
Sbjct: 95  LKEN-GIGEYELSKLLRKFR---KPKTFGD----YKVIPSVEMSVIKHDEDF----YLVI 142

Query: 221 DVAHK 225
            + H+
Sbjct: 143 HIIHQ 147


>d1y44a1 d.157.1.7 (A:1-307) Ribonuclease Z (RNase Z) {Bacillus
           subtilis [TaxId: 1423]}
          Length = 307

 Score = 29.7 bits (65), Expect = 0.34
 Identities = 13/49 (26%), Positives = 19/49 (38%), Gaps = 5/49 (10%)

Query: 49  FAITFKNPNLVIFHYDVAIDPDKPVRYMRPVMQKVAREYFPNSPCGYDG 97
            A   +   L++ H       D  +      +QK A + FPNS   YD 
Sbjct: 256 TAKEARAKQLILTHISARYQGDASLE-----LQKEAVDVFPNSVAAYDF 299


>d2cbna1 d.157.1.7 (A:1-305) Ribonuclease Z (RNase Z) {Escherichia
           coli [TaxId: 562]}
          Length = 305

 Score = 28.6 bits (62), Expect = 0.67
 Identities = 10/49 (20%), Positives = 13/49 (26%), Gaps = 5/49 (10%)

Query: 49  FAITFKNPNLVIFHYDVAIDPDKPVRYMRPVMQKVAREYFPNSPCGYDG 97
            A       L+I H     D       +R       R  FP +    D 
Sbjct: 257 LAREAGVGKLIITHVSSRYDDKGCQHLLRE-----CRSIFPATELANDF 300


>d2e7ya1 d.157.1.7 (A:1-280) Ribonuclease Z (RNase Z) {Thermotoga
           maritima [TaxId: 2336]}
          Length = 280

 Score = 27.0 bits (58), Expect = 2.3
 Identities = 10/56 (17%), Positives = 20/56 (35%), Gaps = 10/56 (17%)

Query: 49  FAITFKNPNLVIFHYDVAIDPDKPVRYMRPV--MQKVAREYFPNSPCGYDGKKNLF 102
                    ++++H           RY+R +  + K  RE  P+    Y   + +F
Sbjct: 231 SVKAAGVKKVILYHIST--------RYIRQLKSVIKKYREEMPDVEILYMDPRKVF 278


>d1x1ia1 a.102.3.2 (A:26-386) Xanthan lyase {Bacillus sp. gl1
           [TaxId: 84635]}
          Length = 361

 Score = 26.8 bits (59), Expect = 3.0
 Identities = 15/84 (17%), Positives = 24/84 (28%), Gaps = 3/84 (3%)

Query: 125 MKDKEYKVEIKKAQEISFASIVEFMRTGVNRPQIAIQALDVVLREPCSLNANFVRVGRSY 184
           + D      +    +           TG  R   A   + V +R     +A  +   R+ 
Sbjct: 140 LYDDISAARMATYMDTIDYFTPSIGLTGAARAWQA---IVVGVRAVIVKDAVKLAAARNG 196

Query: 185 FSPPDPNRLVDLGDGLHLWNGFYQ 208
            S          GDG +    F Q
Sbjct: 197 LSGTGIFPYATGGDGFYADGSFVQ 220


>d1v32a_ a.42.1.1 (A:) Hypothetical protein AT5G08430
          (rafl09-47-k03) {Thale cress (Arabidopsis thaliana)
          [TaxId: 3702]}
          Length = 101

 Score = 24.4 bits (53), Expect = 6.3
 Identities = 12/39 (30%), Positives = 15/39 (38%)

Query: 6  SSSSSSISSAASGAGSKGLYQIPRRSNKDGGTLGRRTQV 44
          SS SS       G GS+ L +      KD   +  R  V
Sbjct: 2  SSGSSGKRFEFVGWGSRQLIEFLHSLGKDTSEMISRYDV 40


>d2gz1a2 d.81.1.1 (A:128-329) Aspartate beta-semialdehyde
           dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]}
          Length = 202

 Score = 25.2 bits (54), Expect = 6.6
 Identities = 11/79 (13%), Positives = 21/79 (26%), Gaps = 3/79 (3%)

Query: 15  AASGAGSKGLYQIPRRSNKDGGTLGRRTQVDTNHFAITFKNPNLVIFHYDVAIDP---DK 71
           A SGAG   + +  R   +      +   +            +  I    +       D 
Sbjct: 29  AVSGAGMGAILETQRELREVLNDGVKPCDLHAEILPSGGDKKHYPIAFNALPQIDVFTDN 88

Query: 72  PVRYMRPVMQKVAREYFPN 90
              Y    M K  ++   +
Sbjct: 89  DYTYEEMKMTKETKKIMED 107


>d2shpa3 d.93.1.1 (A:111-218) Tyrosine phoshatase shp-2 {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 108

 Score = 24.3 bits (52), Expect = 9.2
 Identities = 7/75 (9%), Positives = 21/75 (28%), Gaps = 5/75 (6%)

Query: 103 SKGTLPFGTAMNCTVSIFDEERMKDKEYKVEIKK-----AQEISFASIVEFMRTGVNRPQ 157
             G               ++ + K     +  ++          F S+ + +      P 
Sbjct: 33  HPGDFVLSVRTGDDKGESNDGKSKVTHVMIRCQELKYDVGGGERFDSLTDLVEHYKKNPM 92

Query: 158 IAIQALDVVLREPCS 172
           +      + L++P +
Sbjct: 93  VETLGTVLQLKQPLN 107


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.136    0.410 

Gapped
Lambda     K      H
   0.267   0.0515    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 996,737
Number of extensions: 48704
Number of successful extensions: 147
Number of sequences better than 10.0: 1
Number of HSP's gapped: 146
Number of HSP's successfully gapped: 8
Length of query: 252
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 169
Effective length of database: 1,268,006
Effective search space: 214293014
Effective search space used: 214293014
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.3 bits)