BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5197
(564 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P14599|A4_DROME Beta-amyloid-like protein OS=Drosophila melanogaster GN=Appl PE=1
SV=2
Length = 887
Score = 315 bits (808), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 149/241 (61%), Positives = 185/241 (76%), Gaps = 4/241 (1%)
Query: 320 TTRVPTPDPYFTHFEPKDEHHAFKEALQRLEEMHREKVTKVMKDWSDLEERYQDMRSKSP 379
+T PT DPYFTHF+P EH ++K + +RLEE HREKVT+VMKDWSDLEE+YQDMR P
Sbjct: 390 STAQPTSDPYFTHFDPHYEHQSYKVSQKRLEESHREKVTRVMKDWSDLEEKYQDMRLADP 449
Query: 380 GVAEDFKQKMTLRFQQTVQSLEEEGNAEKHQLIVMHQQRVAARINQHKKDAMNCYIEALN 439
A+ FKQ+MT RFQ +VQ+LEEEGNAEKHQL MHQQRV A INQ K++AM CY +AL
Sbjct: 450 KAAQSFKQRMTARFQTSVQALEEEGNAEKHQLAAMHQQRVLAHINQRKREAMTCYTQALT 509
Query: 440 DVSLNTHKVQKCLQKLLRALHKDRHHTIAHYKHLLAT----NLDFAVKEKPMTLEHLVDI 495
+ N H V+KCLQKLLRALHKDR H +AHY+HLL + L+ A E+P TLE L+DI
Sbjct: 510 EQPPNAHHVEKCLQKLLRALHKDRAHALAHYRHLLNSGGPGGLEAAASERPRTLERLIDI 569
Query: 496 DHTINQSMTMLQRHPALAVKISELMQDYMQALRSKDETPGSLLSLTREAEEAILDKYKAQ 555
D +NQSMTML+R+P L+ KI++LM DY+ ALRSKD+ PGS L ++ EAE ILDKY+ +
Sbjct: 570 DRAVNQSMTMLKRYPELSAKIAQLMNDYILALRSKDDIPGSSLGMSEEAEAGILDKYRVE 629
Query: 556 V 556
+
Sbjct: 630 I 630
Score = 182 bits (463), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 78/115 (67%), Positives = 92/115 (80%), Gaps = 5/115 (4%)
Query: 2 YPKHDITNIVESSNYVKITNWCKVGH---SKCKHT-DWVKPYRCLEGPFQSDALLVPEHC 57
YP DITNIVESS+Y KI WC+ G +KCK + W+KP+RCL GPFQSDALLVPE C
Sbjct: 85 YPNRDITNIVESSHYQKIGGWCRQGALNAAKCKGSHRWIKPFRCL-GPFQSDALLVPEGC 143
Query: 58 VFDHIHNQSKCWEYERWNQTAAQSCLERDLSLRSFAMLLPCGISLFAGVEFVCCP 112
+FDHIHN S+CW + RWNQT A +C ER + +RSFAMLLPCGIS+F+GVEFVCCP
Sbjct: 144 LFDHIHNASRCWPFVRWNQTGAAACQERGMQMRSFAMLLPCGISVFSGVEFVCCP 198
Score = 84.0 bits (206), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 56/114 (49%), Positives = 71/114 (62%), Gaps = 19/114 (16%)
Query: 186 MSHDLSIGEPSY-LRHEVRPRG----DSKGVYVTVVFAGLAVMAAVFIAMTVLKRRSARS 240
M+HDL E S+ LR E + + VY T+ FAG+A+MAAVF+ + V K R++RS
Sbjct: 782 MTHDLGHRESSFSLRREFAQHAHAAKEGRNVYFTLSFAGIALMAAVFVGVAVAKWRTSRS 841
Query: 241 PQNLCNVFFYFQGFIEVDQAATP------EERHVANMQINGYENPTYKYFEIKD 288
P + QGFIEVDQ T EE+ V NMQINGYENPTYKYFE+K+
Sbjct: 842 P--------HAQGFIEVDQNVTTHHPIVREEKIVPNMQINGYENPTYKYFEVKE 887
Score = 38.9 bits (89), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/34 (58%), Positives = 25/34 (73%)
Query: 113 MKDKERERFLEKQRKEVHKHEREELREEKARVKA 146
+ +KER R EKQRKE ERE+LREEK R++A
Sbjct: 634 VAEKERLRLAEKQRKEQRAAEREKLREEKLRLEA 667
>sp|Q10651|A4_CAEEL Beta-amyloid-like protein OS=Caenorhabditis elegans GN=apl-1 PE=1
SV=2
Length = 686
Score = 144 bits (364), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 82/204 (40%), Positives = 117/204 (57%), Gaps = 2/204 (0%)
Query: 327 DPYFTHFEPKDEHHAFKEALQRLEEMHREKVTKVMKDWSDLEERYQDMRSKSPGVAEDFK 386
DPYF +EH FK+A R++E HR+KV KVMK+W DLE RY + ++K P AE FK
Sbjct: 242 DPYFKIANWTNEHDDFKKAEMRMDEKHRKKVDKVMKEWGDLETRYNEQKAKDPKGAEKFK 301
Query: 387 QKMTLRFQQTVQSLEEEGNAEKHQLIVMHQQRVAARINQHKKDAMNCYIEALND--VSLN 444
+M RFQ+TV SLEEE + ++ +H++RV A +N+ K+DA + Y +AL N
Sbjct: 302 SQMNARFQKTVSSLEEEHKRMRKEIEAVHEERVQAMLNEKKRDATHDYRQALATHVNKPN 361
Query: 445 THKVQKCLQKLLRALHKDRHHTIAHYKHLLATNLDFAVKEKPMTLEHLVDIDHTINQSMT 504
H V + L+ +RA KDR HT+ Y+HLL + A KP + L ID IN ++
Sbjct: 362 KHSVLQSLKAYIRAEEKDRMHTLNRYRHLLKADSKEAAAYKPTVIHRLRYIDLRINGTLA 421
Query: 505 MLQRHPALAVKISELMQDYMQALR 528
ML+ P L + + Y + R
Sbjct: 422 MLRDFPDLEKYVRPIAVTYWKDYR 445
Score = 124 bits (311), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 53/117 (45%), Positives = 76/117 (64%), Gaps = 6/117 (5%)
Query: 2 YPKHDITNIVESSNYVKITNWCKVGHSKCKHTDWVKPYRCLEGPFQSDALLVPEHCVFDH 61
YP +ITNIVE S+ V I++WC+ S CK T V+PY C++G F S+AL VP C F H
Sbjct: 80 YPSMNITNIVEYSHEVSISDWCREEGSPCKWTHSVRPYHCIDGEFHSEALQVPHDCQFSH 139
Query: 62 IHNQSKCWEYERWNQTAAQSCL------ERDLSLRSFAMLLPCGISLFAGVEFVCCP 112
++++ +C +Y+ W A + C +D+ +RSFA+L PC + +F GVEFVCCP
Sbjct: 140 VNSRDQCNDYQHWKDEAGKQCKTKKSKGNKDMIVRSFAVLEPCALDMFTGVEFVCCP 196
Score = 65.1 bits (157), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/110 (39%), Positives = 54/110 (49%), Gaps = 23/110 (20%)
Query: 181 QPAYAMSHDLSIGEPSYLRHEVRPRGDSKGVYVTVVFAGLAVMAAVFI---AMTVLKRRS 237
+PA HD I P R + V+ V A + A+ I A+T +RR
Sbjct: 596 EPASFYRHDKLIQSPEVER-------SASSVFQPYVLASAMFITAICIIAFAITNARRRR 648
Query: 238 ARSPQNLCNVFFYFQGFIEVDQAATPEERHVANMQINGYENPTYKYFEIK 287
A +GFIEVD TPEERHVA MQ+NGYENPTY +F+ K
Sbjct: 649 A------------MRGFIEVD-VYTPEERHVAGMQVNGYENPTYSFFDSK 685
>sp|O73683|A4_TETFL Amyloid beta A4 protein OS=Tetraodon fluviatilis GN=app PE=2 SV=1
Length = 780
Score = 130 bits (326), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 61/129 (47%), Positives = 81/129 (62%), Gaps = 4/129 (3%)
Query: 1 IYPKHDITNIVESSNYVKITNWCKVGHSKCK-HTDWVKPYRCLEGPFQSDALLVPEHCVF 59
+YP+ ITN+VE++ V I NWCK G +C+ H V PYRCL G F SDALLVP+ C F
Sbjct: 77 VYPELQITNVVEANQPVSIQNWCKKGRKQCRSHMHIVVPYRCLVGEFVSDALLVPDKCKF 136
Query: 60 DHIHNQSKCWEYERWNQTAAQSCLERDLSLRSFAMLLPCGISLFAGVEFVCCPMKDKERE 119
H ++C + W+ A +SC +R ++L + MLLPCGI F GVEFVCCP E E
Sbjct: 137 LHQERMNQCESHLHWHTVAKESCGDRAMNLHDYGMLLPCGIDRFRGVEFVCCP---AEAE 193
Query: 120 RFLEKQRKE 128
R ++ K+
Sbjct: 194 RDMDSTEKD 202
Score = 104 bits (259), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 63/198 (31%), Positives = 109/198 (55%), Gaps = 10/198 (5%)
Query: 327 DPYFTHFEPKDEHHAFKEALQRLEEMHREKVTKVMKDWSDLEERYQDMRSKSPGVAEDFK 386
D Y ++EH F++A + LE HRE++++VM++W + E + +++ K
Sbjct: 394 DHYLETPADENEHAHFQKAKESLEAKHRERMSQVMREWEEAERQAKNLPRAD-------K 446
Query: 387 QKMTLRFQQTVQSLEEEGNAEKHQLIVMHQQRVAARINQHKKDAMNCYIEALNDVSLNTH 446
+ + RFQ+ V++LE+E +E+ QL+ H RV A +N ++ A+ Y+ AL
Sbjct: 447 KIVIQRFQEKVEALEQEAASERQQLVETHMARVEALLNDRRRLALENYLTALQQDPPRPR 506
Query: 447 KVQKCLQKLLRALHKDRHHTIAHYKHLLATNLDFAVKEKPMTLEHLVDIDHTINQSMTML 506
V L+K +RA KDR HT+ H++H+ + A + +P L HL I+ +NQS+ +L
Sbjct: 507 HVFSLLKKYVRAEQKDRQHTLKHFEHVRMVDPKKAAQIRPQVLTHLRVIEERMNQSLGLL 566
Query: 507 QRHPALAVKIS---ELMQ 521
+ P +A I EL+Q
Sbjct: 567 YKVPGVADDIQDQVELLQ 584
Score = 72.4 bits (176), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 67/135 (49%), Gaps = 17/135 (12%)
Query: 152 TYEPTGPSTPIPP-GVDAHPPYSSQRHDTVQPAYAMSHDLSIGEPSYLRHEVRPRGDSKG 210
T+E P+ P+ ++A P + D Y + H + + +V G +KG
Sbjct: 658 TFERGVPTRPVTGKSMEAVPELRMETEDRQSTEYEVHHQKLV----FFAEDV---GSNKG 710
Query: 211 VYVTVVFAGLAVMAAVFIAMTVLKRRSARSPQNLCNVFFYFQGFIEVDQAATPEERHVAN 270
+ ++ G+ + + I + +L+++ S G IEVD A TPEERH++
Sbjct: 711 AIIGLMVGGVVIATVIVITLVMLRKKQYTS---------IHHGIIEVDAAVTPEERHLSK 761
Query: 271 MQINGYENPTYKYFE 285
MQ NGYENPTYK+FE
Sbjct: 762 MQQNGYENPTYKFFE 776
>sp|O93279|A4_TAKRU Amyloid beta A4 protein OS=Takifugu rubripes GN=app PE=3 SV=1
Length = 737
Score = 129 bits (324), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 57/113 (50%), Positives = 75/113 (66%), Gaps = 1/113 (0%)
Query: 1 IYPKHDITNIVESSNYVKITNWCKVGHSKCK-HTDWVKPYRCLEGPFQSDALLVPEHCVF 59
+YP+ ITN+VE++ V I NWCK G +C+ HT V PYRCL G F SDALLVP+ C F
Sbjct: 77 VYPELQITNVVEANQPVSIQNWCKKGRKQCRSHTHIVVPYRCLVGEFVSDALLVPDKCKF 136
Query: 60 DHIHNQSKCWEYERWNQTAAQSCLERDLSLRSFAMLLPCGISLFAGVEFVCCP 112
H ++C + W+ A +SC +R ++L + MLLPCGI F GV+FVCCP
Sbjct: 137 LHQERMNQCESHLHWHTVAKESCGDRSMNLHDYGMLLPCGIDRFRGVKFVCCP 189
Score = 114 bits (285), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 66/208 (31%), Positives = 111/208 (53%), Gaps = 11/208 (5%)
Query: 313 ATTKSHATTRVPTP----DPYFTHFEPKDEHHAFKEALQRLEEMHREKVTKVMKDWSDLE 368
A S T P+P D YF +EH F++A + LE HRE++++VM++W + E
Sbjct: 338 AVCSSSLPTVAPSPPDAVDQYFEAPGDDNEHADFRKAKESLEAKHRERMSQVMREWEEAE 397
Query: 369 ERYQDMRSKSPGVAEDFKQKMTLRFQQTVQSLEEEGNAEKHQLIVMHQQRVAARINQHKK 428
+ +++ K+ + FQ+ V++LE+E E+ QL+ H RV A +N ++
Sbjct: 398 RQAKNLPRAD-------KKAVIQHFQEKVEALEQEAAGERQQLVETHMARVEALLNSRRR 450
Query: 429 DAMNCYIEALNDVSLNTHKVQKCLQKLLRALHKDRHHTIAHYKHLLATNLDFAVKEKPMT 488
+ Y+ AL +V L+K +RA KDR HT+ HY+H+ + A + +P
Sbjct: 451 LTLENYLGALQANPPRARQVLSLLKKYVRAEQKDRQHTLKHYEHVRTVDPKKAAQIRPQV 510
Query: 489 LEHLVDIDHTINQSMTMLQRHPALAVKI 516
L HL ID +NQS+ +L + P++A +I
Sbjct: 511 LTHLRVIDERMNQSLALLYKVPSVASEI 538
Score = 72.8 bits (177), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 47/80 (58%), Gaps = 9/80 (11%)
Query: 206 GDSKGVYVTVVFAGLAVMAAVFIAMTVLKRRSARSPQNLCNVFFYFQGFIEVDQAATPEE 265
G +KG + ++ G+ + + I + +L+++ S G IEVD A TPEE
Sbjct: 663 GSNKGAIIGLMVGGVVIATVIVITLVMLRKKQYTS---------IHHGVIEVDAAVTPEE 713
Query: 266 RHVANMQINGYENPTYKYFE 285
RH+A MQ NGYENPTYK+FE
Sbjct: 714 RHLARMQQNGYENPTYKFFE 733
>sp|P12023|A4_MOUSE Amyloid beta A4 protein OS=Mus musculus GN=App PE=1 SV=3
Length = 770
Score = 128 bits (322), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 58/117 (49%), Positives = 75/117 (64%), Gaps = 1/117 (0%)
Query: 1 IYPKHDITNIVESSNYVKITNWCKVGHSKCK-HTDWVKPYRCLEGPFQSDALLVPEHCVF 59
+YP+ ITN+VE++ V I NWCK G +CK HT V PYRCL G F SDALLVP+ C F
Sbjct: 76 VYPELQITNVVEANQPVTIQNWCKRGRKQCKTHTHIVIPYRCLVGEFVSDALLVPDKCKF 135
Query: 60 DHIHNQSKCWEYERWNQTAAQSCLERDLSLRSFAMLLPCGISLFAGVEFVCCPMKDK 116
H C + W+ A ++C E+ +L + MLLPCGI F GVEFVCCP+ ++
Sbjct: 136 LHQERMDVCETHLHWHTVAKETCSEKSTNLHDYGMLLPCGIDKFRGVEFVCCPLAEE 192
Score = 114 bits (284), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 73/227 (32%), Positives = 125/227 (55%), Gaps = 11/227 (4%)
Query: 320 TTRVPTPDPYFTHFE-PKDE--HHAFKEALQRLEEMHREKVTKVMKDWSDLEERYQDMRS 376
TT TPD + E P DE H F++A +RLE HRE++++VM++W + E + +++
Sbjct: 366 TTAASTPDAVDKYLETPGDENEHAHFQKAKERLEAKHRERMSQVMREWEEAERQAKNLPK 425
Query: 377 KSPGVAEDFKQKMTLRFQQTVQSLEEEGNAEKHQLIVMHQQRVAARINQHKKDAMNCYIE 436
K+ + FQ+ V+SLE+E E+ QL+ H RV A +N ++ A+ YI
Sbjct: 426 AD-------KKAVIQHFQEKVESLEQEAANERQQLVETHMARVEAMLNDRRRLALENYIT 478
Query: 437 ALNDVSLNTHKVQKCLQKLLRALHKDRHHTIAHYKHLLATNLDFAVKEKPMTLEHLVDID 496
AL V H V L+K +RA KDR HT+ H++H+ + A + + + HL I
Sbjct: 479 ALQAVPPRPHHVFNMLKKYVRAEQKDRQHTLKHFEHVRMVDPKKAAQIRSQVMTHLRVIY 538
Query: 497 HTINQSMTMLQRHPALAVKISELMQDYMQALRS-KDETPGSLLSLTR 542
+NQS+++L PA+A +I + + + +Q ++ D+ +++S R
Sbjct: 539 ERMNQSLSLLYNVPAVAEEIQDEVDELLQKEQNYSDDVLANMISEPR 585
Score = 72.4 bits (176), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 47/80 (58%), Gaps = 9/80 (11%)
Query: 206 GDSKGVYVTVVFAGLAVMAAVFIAMTVLKRRSARSPQNLCNVFFYFQGFIEVDQAATPEE 265
G +KG + ++ G+ + + I + +LK++ S G +EVD A TPEE
Sbjct: 696 GSNKGAIIGLMVGGVVIATVIVITLVMLKKKQYTS---------IHHGVVEVDAAVTPEE 746
Query: 266 RHVANMQINGYENPTYKYFE 285
RH++ MQ NGYENPTYK+FE
Sbjct: 747 RHLSKMQQNGYENPTYKFFE 766
>sp|P08592|A4_RAT Amyloid beta A4 protein OS=Rattus norvegicus GN=App PE=1 SV=2
Length = 770
Score = 128 bits (322), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 58/117 (49%), Positives = 75/117 (64%), Gaps = 1/117 (0%)
Query: 1 IYPKHDITNIVESSNYVKITNWCKVGHSKCK-HTDWVKPYRCLEGPFQSDALLVPEHCVF 59
+YP+ ITN+VE++ V I NWCK G +CK HT V PYRCL G F SDALLVP+ C F
Sbjct: 76 VYPELQITNVVEANQPVTIQNWCKRGRKQCKTHTHIVIPYRCLVGEFVSDALLVPDKCKF 135
Query: 60 DHIHNQSKCWEYERWNQTAAQSCLERDLSLRSFAMLLPCGISLFAGVEFVCCPMKDK 116
H C + W+ A ++C E+ +L + MLLPCGI F GVEFVCCP+ ++
Sbjct: 136 LHQERMDVCETHLHWHTVAKETCSEKSTNLHDYGMLLPCGIDKFRGVEFVCCPLAEE 192
Score = 114 bits (284), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 70/209 (33%), Positives = 116/209 (55%), Gaps = 10/209 (4%)
Query: 320 TTRVPTPDPYFTHFE-PKDE--HHAFKEALQRLEEMHREKVTKVMKDWSDLEERYQDMRS 376
TT TPD + E P DE H F++A +RLE HRE++++VM++W + E + +++
Sbjct: 366 TTAASTPDAVDKYLETPGDENEHAHFQKAKERLEAKHRERMSQVMREWEEAERQAKNLPK 425
Query: 377 KSPGVAEDFKQKMTLRFQQTVQSLEEEGNAEKHQLIVMHQQRVAARINQHKKDAMNCYIE 436
K+ + FQ+ V+SLE+E E+ QL+ H RV A +N ++ A+ YI
Sbjct: 426 AD-------KKAVIQHFQEKVESLEQEAANERQQLVETHMARVEAMLNDRRRLALENYIT 478
Query: 437 ALNDVSLNTHKVQKCLQKLLRALHKDRHHTIAHYKHLLATNLDFAVKEKPMTLEHLVDID 496
AL V H V L+K +RA KDR HT+ H++H+ + A + + + HL I
Sbjct: 479 ALQAVPPRPHHVFNMLKKYVRAEQKDRQHTLKHFEHVRMVDPKKAAQIRSQVMTHLRVIY 538
Query: 497 HTINQSMTMLQRHPALAVKISELMQDYMQ 525
+NQS+++L PA+A +I + + + +Q
Sbjct: 539 ERMNQSLSLLYNVPAVAEEIQDEVDELLQ 567
Score = 72.4 bits (176), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 47/80 (58%), Gaps = 9/80 (11%)
Query: 206 GDSKGVYVTVVFAGLAVMAAVFIAMTVLKRRSARSPQNLCNVFFYFQGFIEVDQAATPEE 265
G +KG + ++ G+ + + I + +LK++ S G +EVD A TPEE
Sbjct: 696 GSNKGAIIGLMVGGVVIATVIVITLVMLKKKQYTS---------IHHGVVEVDAAVTPEE 746
Query: 266 RHVANMQINGYENPTYKYFE 285
RH++ MQ NGYENPTYK+FE
Sbjct: 747 RHLSKMQQNGYENPTYKFFE 766
>sp|Q5IS80|A4_PANTR Amyloid beta A4 protein OS=Pan troglodytes GN=APP PE=2 SV=1
Length = 770
Score = 127 bits (320), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 57/117 (48%), Positives = 75/117 (64%), Gaps = 1/117 (0%)
Query: 1 IYPKHDITNIVESSNYVKITNWCKVGHSKCK-HTDWVKPYRCLEGPFQSDALLVPEHCVF 59
+YP+ ITN+VE++ V I NWCK G +CK H +V PYRCL G F SDALLVP+ C F
Sbjct: 76 VYPELQITNVVEANQPVTIQNWCKRGRKQCKTHPHFVIPYRCLVGEFVSDALLVPDKCKF 135
Query: 60 DHIHNQSKCWEYERWNQTAAQSCLERDLSLRSFAMLLPCGISLFAGVEFVCCPMKDK 116
H C + W+ A ++C E+ +L + MLLPCGI F GVEFVCCP+ ++
Sbjct: 136 LHQERMDVCETHLHWHTVAKETCSEKSTNLHDYGMLLPCGIDKFRGVEFVCCPLAEE 192
Score = 110 bits (276), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 72/227 (31%), Positives = 124/227 (54%), Gaps = 11/227 (4%)
Query: 320 TTRVPTPDPYFTHFE-PKDE--HHAFKEALQRLEEMHREKVTKVMKDWSDLEERYQDMRS 376
TT TPD + E P DE H F++A +RLE HRE++++VM++W + E + +++
Sbjct: 366 TTAASTPDAVDKYLETPGDENEHAHFQKAKERLEAKHRERMSQVMREWEEAERQAKNLPK 425
Query: 377 KSPGVAEDFKQKMTLRFQQTVQSLEEEGNAEKHQLIVMHQQRVAARINQHKKDAMNCYIE 436
K+ + FQ+ V+SLE+E E+ QL+ H RV A +N ++ A+ YI
Sbjct: 426 AD-------KKAVIQHFQEKVESLEQEAANERQQLVETHMARVEAMLNDRRRLALENYIT 478
Query: 437 ALNDVSLNTHKVQKCLQKLLRALHKDRHHTIAHYKHLLATNLDFAVKEKPMTLEHLVDID 496
AL V V L+K +RA KDR HT+ H++H+ + A + + + HL I
Sbjct: 479 ALQAVPPRPRHVFNMLKKYVRAEQKDRQHTLKHFEHVRMVDPKKAAQIRSQVMTHLRVIY 538
Query: 497 HTINQSMTMLQRHPALAVKISELMQDYMQALRS-KDETPGSLLSLTR 542
+NQS+++L PA+A +I + + + +Q ++ D+ +++S R
Sbjct: 539 ERMNQSLSLLYNVPAVAEEIQDEVDELLQKEQNYSDDVLANMISEPR 585
Score = 72.4 bits (176), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 47/80 (58%), Gaps = 9/80 (11%)
Query: 206 GDSKGVYVTVVFAGLAVMAAVFIAMTVLKRRSARSPQNLCNVFFYFQGFIEVDQAATPEE 265
G +KG + ++ G+ + + I + +LK++ S G +EVD A TPEE
Sbjct: 696 GSNKGAIIGLMVGGVVIATVIVITLVMLKKKQYTS---------IHHGVVEVDAAVTPEE 746
Query: 266 RHVANMQINGYENPTYKYFE 285
RH++ MQ NGYENPTYK+FE
Sbjct: 747 RHLSKMQQNGYENPTYKFFE 766
>sp|P53601|A4_MACFA Amyloid beta A4 protein OS=Macaca fascicularis GN=APP PE=2 SV=3
Length = 770
Score = 127 bits (320), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 57/117 (48%), Positives = 75/117 (64%), Gaps = 1/117 (0%)
Query: 1 IYPKHDITNIVESSNYVKITNWCKVGHSKCK-HTDWVKPYRCLEGPFQSDALLVPEHCVF 59
+YP+ ITN+VE++ V I NWCK G +CK H +V PYRCL G F SDALLVP+ C F
Sbjct: 76 VYPELQITNVVEANQPVTIQNWCKRGRKQCKTHPHFVIPYRCLVGEFVSDALLVPDKCKF 135
Query: 60 DHIHNQSKCWEYERWNQTAAQSCLERDLSLRSFAMLLPCGISLFAGVEFVCCPMKDK 116
H C + W+ A ++C E+ +L + MLLPCGI F GVEFVCCP+ ++
Sbjct: 136 LHQERMDVCETHLHWHTVAKETCSEKSTNLHDYGMLLPCGIDKFRGVEFVCCPLAEE 192
Score = 110 bits (276), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 72/227 (31%), Positives = 124/227 (54%), Gaps = 11/227 (4%)
Query: 320 TTRVPTPDPYFTHFE-PKDE--HHAFKEALQRLEEMHREKVTKVMKDWSDLEERYQDMRS 376
TT TPD + E P DE H F++A +RLE HRE++++VM++W + E + +++
Sbjct: 366 TTAASTPDAVDKYLETPGDENEHAHFQKAKERLEAKHRERMSQVMREWEEAERQAKNLPK 425
Query: 377 KSPGVAEDFKQKMTLRFQQTVQSLEEEGNAEKHQLIVMHQQRVAARINQHKKDAMNCYIE 436
K+ + FQ+ V+SLE+E E+ QL+ H RV A +N ++ A+ YI
Sbjct: 426 AD-------KKAVIQHFQEKVESLEQEAANERQQLVETHMARVEAMLNDRRRLALENYIT 478
Query: 437 ALNDVSLNTHKVQKCLQKLLRALHKDRHHTIAHYKHLLATNLDFAVKEKPMTLEHLVDID 496
AL V V L+K +RA KDR HT+ H++H+ + A + + + HL I
Sbjct: 479 ALQAVPPRPRHVFNMLKKYVRAEQKDRQHTLKHFEHVRMVDPKKAAQIRSQVMTHLRVIY 538
Query: 497 HTINQSMTMLQRHPALAVKISELMQDYMQALRS-KDETPGSLLSLTR 542
+NQS+++L PA+A +I + + + +Q ++ D+ +++S R
Sbjct: 539 ERMNQSLSLLYNVPAVAEEIQDEVDELLQKEQNYSDDVLANMISEPR 585
Score = 72.4 bits (176), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 47/80 (58%), Gaps = 9/80 (11%)
Query: 206 GDSKGVYVTVVFAGLAVMAAVFIAMTVLKRRSARSPQNLCNVFFYFQGFIEVDQAATPEE 265
G +KG + ++ G+ + + I + +LK++ S G +EVD A TPEE
Sbjct: 696 GSNKGAIIGLMVGGVVIATVIVITLVMLKKKQYTS---------IHHGVVEVDAAVTPEE 746
Query: 266 RHVANMQINGYENPTYKYFE 285
RH++ MQ NGYENPTYK+FE
Sbjct: 747 RHLSKMQQNGYENPTYKFFE 766
>sp|P05067|A4_HUMAN Amyloid beta A4 protein OS=Homo sapiens GN=APP PE=1 SV=3
Length = 770
Score = 127 bits (320), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 57/117 (48%), Positives = 75/117 (64%), Gaps = 1/117 (0%)
Query: 1 IYPKHDITNIVESSNYVKITNWCKVGHSKCK-HTDWVKPYRCLEGPFQSDALLVPEHCVF 59
+YP+ ITN+VE++ V I NWCK G +CK H +V PYRCL G F SDALLVP+ C F
Sbjct: 76 VYPELQITNVVEANQPVTIQNWCKRGRKQCKTHPHFVIPYRCLVGEFVSDALLVPDKCKF 135
Query: 60 DHIHNQSKCWEYERWNQTAAQSCLERDLSLRSFAMLLPCGISLFAGVEFVCCPMKDK 116
H C + W+ A ++C E+ +L + MLLPCGI F GVEFVCCP+ ++
Sbjct: 136 LHQERMDVCETHLHWHTVAKETCSEKSTNLHDYGMLLPCGIDKFRGVEFVCCPLAEE 192
Score = 110 bits (276), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 72/227 (31%), Positives = 124/227 (54%), Gaps = 11/227 (4%)
Query: 320 TTRVPTPDPYFTHFE-PKDE--HHAFKEALQRLEEMHREKVTKVMKDWSDLEERYQDMRS 376
TT TPD + E P DE H F++A +RLE HRE++++VM++W + E + +++
Sbjct: 366 TTAASTPDAVDKYLETPGDENEHAHFQKAKERLEAKHRERMSQVMREWEEAERQAKNLPK 425
Query: 377 KSPGVAEDFKQKMTLRFQQTVQSLEEEGNAEKHQLIVMHQQRVAARINQHKKDAMNCYIE 436
K+ + FQ+ V+SLE+E E+ QL+ H RV A +N ++ A+ YI
Sbjct: 426 AD-------KKAVIQHFQEKVESLEQEAANERQQLVETHMARVEAMLNDRRRLALENYIT 478
Query: 437 ALNDVSLNTHKVQKCLQKLLRALHKDRHHTIAHYKHLLATNLDFAVKEKPMTLEHLVDID 496
AL V V L+K +RA KDR HT+ H++H+ + A + + + HL I
Sbjct: 479 ALQAVPPRPRHVFNMLKKYVRAEQKDRQHTLKHFEHVRMVDPKKAAQIRSQVMTHLRVIY 538
Query: 497 HTINQSMTMLQRHPALAVKISELMQDYMQALRS-KDETPGSLLSLTR 542
+NQS+++L PA+A +I + + + +Q ++ D+ +++S R
Sbjct: 539 ERMNQSLSLLYNVPAVAEEIQDEVDELLQKEQNYSDDVLANMISEPR 585
Score = 72.4 bits (176), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 47/80 (58%), Gaps = 9/80 (11%)
Query: 206 GDSKGVYVTVVFAGLAVMAAVFIAMTVLKRRSARSPQNLCNVFFYFQGFIEVDQAATPEE 265
G +KG + ++ G+ + + I + +LK++ S G +EVD A TPEE
Sbjct: 696 GSNKGAIIGLMVGGVVIATVIVITLVMLKKKQYTS---------IHHGVVEVDAAVTPEE 746
Query: 266 RHVANMQINGYENPTYKYFE 285
RH++ MQ NGYENPTYK+FE
Sbjct: 747 RHLSKMQQNGYENPTYKFFE 766
>sp|P79307|A4_PIG Amyloid beta A4 protein OS=Sus scrofa GN=APP PE=2 SV=2
Length = 770
Score = 125 bits (315), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 57/117 (48%), Positives = 74/117 (63%), Gaps = 1/117 (0%)
Query: 1 IYPKHDITNIVESSNYVKITNWCKVGHSKCK-HTDWVKPYRCLEGPFQSDALLVPEHCVF 59
+YP+ ITN+VE++ V I NWCK +CK HT V PYRCL G F SDALLVP+ C F
Sbjct: 76 VYPELQITNVVEANQPVTIQNWCKRSRKQCKTHTHIVIPYRCLVGEFVSDALLVPDKCKF 135
Query: 60 DHIHNQSKCWEYERWNQTAAQSCLERDLSLRSFAMLLPCGISLFAGVEFVCCPMKDK 116
H C + W+ A ++C E+ +L + MLLPCGI F GVEFVCCP+ ++
Sbjct: 136 LHQERMDVCETHLHWHTVAKETCSEKSTNLHDYGMLLPCGIDKFRGVEFVCCPLAEE 192
Score = 110 bits (275), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 72/227 (31%), Positives = 124/227 (54%), Gaps = 11/227 (4%)
Query: 320 TTRVPTPDPYFTHFE-PKDE--HHAFKEALQRLEEMHREKVTKVMKDWSDLEERYQDMRS 376
TT TPD + E P DE H F++A +RLE HRE++++VM++W + E + +++
Sbjct: 366 TTAASTPDAVDKYLETPGDENEHAHFQKAKERLEAKHRERMSQVMREWEEAERQAKNLPK 425
Query: 377 KSPGVAEDFKQKMTLRFQQTVQSLEEEGNAEKHQLIVMHQQRVAARINQHKKDAMNCYIE 436
K+ + FQ+ V+SLE+E E+ QL+ H RV A +N ++ A+ YI
Sbjct: 426 AD-------KKAVIQHFQEKVESLEQEAANERQQLVETHMARVEAMLNDRRRLALENYIT 478
Query: 437 ALNDVSLNTHKVQKCLQKLLRALHKDRHHTIAHYKHLLATNLDFAVKEKPMTLEHLVDID 496
AL V V L+K +RA KDR HT+ H++H+ + A + + + HL I
Sbjct: 479 ALQAVPPRPRHVFNMLKKYVRAEQKDRQHTLKHFEHVRMVDPKKAAQIRSQVMTHLRVIY 538
Query: 497 HTINQSMTMLQRHPALAVKISELMQDYMQALRS-KDETPGSLLSLTR 542
+NQS+++L PA+A +I + + + +Q ++ D+ +++S R
Sbjct: 539 ERMNQSLSLLYNVPAVAEEIQDEVDELLQKEQNYSDDVLANMISEPR 585
Score = 72.4 bits (176), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 47/80 (58%), Gaps = 9/80 (11%)
Query: 206 GDSKGVYVTVVFAGLAVMAAVFIAMTVLKRRSARSPQNLCNVFFYFQGFIEVDQAATPEE 265
G +KG + ++ G+ + + I + +LK++ S G +EVD A TPEE
Sbjct: 696 GSNKGAIIGLMVGGVVIATVIVITLVMLKKKQYTS---------IHHGVVEVDAAVTPEE 746
Query: 266 RHVANMQINGYENPTYKYFE 285
RH++ MQ NGYENPTYK+FE
Sbjct: 747 RHLSKMQQNGYENPTYKFFE 766
>sp|Q60495|A4_CAVPO Amyloid beta A4 protein OS=Cavia porcellus GN=APP PE=1 SV=2
Length = 770
Score = 124 bits (312), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 56/117 (47%), Positives = 74/117 (63%), Gaps = 1/117 (0%)
Query: 1 IYPKHDITNIVESSNYVKITNWCKVGHSKCK-HTDWVKPYRCLEGPFQSDALLVPEHCVF 59
+YP+ ITN+VE++ V I NWCK +CK H +V PYRCL G F SDALLVP+ C F
Sbjct: 76 VYPELQITNVVEANQPVTIQNWCKRSRKQCKTHPHFVIPYRCLVGEFVSDALLVPDKCKF 135
Query: 60 DHIHNQSKCWEYERWNQTAAQSCLERDLSLRSFAMLLPCGISLFAGVEFVCCPMKDK 116
H C + W+ A ++C E+ +L + MLLPCGI F GVEFVCCP+ ++
Sbjct: 136 LHQERMDVCETHLHWHTVAKETCSEKSTNLHDYGMLLPCGIDKFRGVEFVCCPLAEE 192
Score = 112 bits (279), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 74/253 (29%), Positives = 133/253 (52%), Gaps = 17/253 (6%)
Query: 293 ENIVSPSSGPASS--TTTPTSTATTKSHATTRVPTPDPYFTHFEPKDEHHAFKEALQRLE 350
+N++ S P S PT+ A+T + TP ++EH F++A +RLE
Sbjct: 347 QNLLKTSGEPVSQGPVKLPTTAASTPDAVDKYLETPGD-------ENEHAHFQKAKERLE 399
Query: 351 EMHREKVTKVMKDWSDLEERYQDMRSKSPGVAEDFKQKMTLRFQQTVQSLEEEGNAEKHQ 410
HRE++++VM++W + E + +++ K+ + FQ+ V+SLE+E E+ Q
Sbjct: 400 AKHRERMSQVMREWEEAERQAKNLPKAD-------KKAVIQHFQEKVESLEQEAANERQQ 452
Query: 411 LIVMHQQRVAARINQHKKDAMNCYIEALNDVSLNTHKVQKCLQKLLRALHKDRHHTIAHY 470
L+ H RV A +N ++ A+ YI AL V V L+K +RA KDR HT+ H+
Sbjct: 453 LVETHMARVEAMLNDRRRLALENYITALQAVPPRPRHVFNMLKKYVRAEQKDRQHTLKHF 512
Query: 471 KHLLATNLDFAVKEKPMTLEHLVDIDHTINQSMTMLQRHPALAVKISELMQDYMQALRS- 529
+H+ + A + + + HL I +NQS+++L PA+A +I + + + +Q ++
Sbjct: 513 EHVRMVDPKKAAQIRSQVMTHLRVIYERMNQSLSLLYNVPAVAEEIQDEVDELLQKEQNY 572
Query: 530 KDETPGSLLSLTR 542
D+ +++S R
Sbjct: 573 SDDVLANMISEPR 585
Score = 72.4 bits (176), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 47/80 (58%), Gaps = 9/80 (11%)
Query: 206 GDSKGVYVTVVFAGLAVMAAVFIAMTVLKRRSARSPQNLCNVFFYFQGFIEVDQAATPEE 265
G +KG + ++ G+ + + I + +LK++ S G +EVD A TPEE
Sbjct: 696 GSNKGAIIGLMVGGVVIATVIVITLVMLKKKQYTS---------IHHGVVEVDAAVTPEE 746
Query: 266 RHVANMQINGYENPTYKYFE 285
RH++ MQ NGYENPTYK+FE
Sbjct: 747 RHLSKMQQNGYENPTYKFFE 766
>sp|Q95241|A4_SAISC Amyloid beta A4 protein OS=Saimiri sciureus GN=APP PE=2 SV=1
Length = 751
Score = 122 bits (307), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 56/117 (47%), Positives = 73/117 (62%), Gaps = 1/117 (0%)
Query: 1 IYPKHDITNIVESSNYVKITNWCKVGHSKCK-HTDWVKPYRCLEGPFQSDALLVPEHCVF 59
+YP+ ITN+VE++ V I NWCK +CK H V PYRCL G F SDALLVP+ C F
Sbjct: 76 VYPELQITNVVEANQPVTIQNWCKRDRKQCKTHPHIVIPYRCLVGEFVSDALLVPDKCKF 135
Query: 60 DHIHNQSKCWEYERWNQTAAQSCLERDLSLRSFAMLLPCGISLFAGVEFVCCPMKDK 116
H C + W+ A ++C E+ +L + MLLPCGI F GVEFVCCP+ ++
Sbjct: 136 LHQERMDVCETHLHWHTVAKETCSEKSTNLHDYGMLLPCGIDKFRGVEFVCCPLAEE 192
Score = 110 bits (276), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 72/227 (31%), Positives = 124/227 (54%), Gaps = 11/227 (4%)
Query: 320 TTRVPTPDPYFTHFE-PKDE--HHAFKEALQRLEEMHREKVTKVMKDWSDLEERYQDMRS 376
TT TPD + E P DE H F++A +RLE HRE++++VM++W + E + +++
Sbjct: 347 TTAASTPDAVDKYLETPGDENEHAHFQKAKERLEAKHRERMSQVMREWEEAERQAKNLPK 406
Query: 377 KSPGVAEDFKQKMTLRFQQTVQSLEEEGNAEKHQLIVMHQQRVAARINQHKKDAMNCYIE 436
K+ + FQ+ V+SLE+E E+ QL+ H RV A +N ++ A+ YI
Sbjct: 407 AD-------KKAVIQHFQEKVESLEQEAANERQQLVETHMARVEAMLNDRRRLALENYIT 459
Query: 437 ALNDVSLNTHKVQKCLQKLLRALHKDRHHTIAHYKHLLATNLDFAVKEKPMTLEHLVDID 496
AL V V L+K +RA KDR HT+ H++H+ + A + + + HL I
Sbjct: 460 ALQAVPPRPRHVFNMLKKYVRAEQKDRQHTLKHFEHVRMVDPKKAAQIRSQVMTHLRVIY 519
Query: 497 HTINQSMTMLQRHPALAVKISELMQDYMQALRS-KDETPGSLLSLTR 542
+NQS+++L PA+A +I + + + +Q ++ D+ +++S R
Sbjct: 520 ERMNQSLSLLYNVPAVAEEIQDEVDELLQKEQNYSDDVLANMISEPR 566
Score = 72.0 bits (175), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 47/80 (58%), Gaps = 9/80 (11%)
Query: 206 GDSKGVYVTVVFAGLAVMAAVFIAMTVLKRRSARSPQNLCNVFFYFQGFIEVDQAATPEE 265
G +KG + ++ G+ + + I + +LK++ S G +EVD A TPEE
Sbjct: 677 GSNKGAIIGLMVGGVVIATVIVITLVMLKKKQYTS---------IHHGVVEVDAAVTPEE 727
Query: 266 RHVANMQINGYENPTYKYFE 285
RH++ MQ NGYENPTYK+FE
Sbjct: 728 RHLSKMQQNGYENPTYKFFE 747
>sp|Q06481|APLP2_HUMAN Amyloid-like protein 2 OS=Homo sapiens GN=APLP2 PE=1 SV=2
Length = 763
Score = 117 bits (292), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 48/112 (42%), Positives = 71/112 (63%), Gaps = 1/112 (0%)
Query: 1 IYPKHDITNIVESSNYVKITNWCKVGHSKCKHTDWVKPYRCLEGPFQSDALLVPEHCVFD 60
+YP+ ITN++E++ V I NWC+ +CK + +V P++CL G F SD LLVPE C F
Sbjct: 94 MYPELQITNVMEANQRVSIDNWCRRDKKQCK-SRFVTPFKCLVGEFVSDVLLVPEKCQFF 152
Query: 61 HIHNQSKCWEYERWNQTAAQSCLERDLSLRSFAMLLPCGISLFAGVEFVCCP 112
H C ++ W+ ++CL + ++L S+ MLLPCG+ F G E+VCCP
Sbjct: 153 HKERMEVCENHQHWHTVVKEACLTQGMTLYSYGMLLPCGVDQFHGTEYVCCP 204
Score = 115 bits (287), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 78/237 (32%), Positives = 130/237 (54%), Gaps = 21/237 (8%)
Query: 324 PTP------DPYFTHFEPKDEHHAFKEALQRLEEMHREKVTKVMKDWSDLEERYQDMRSK 377
PTP D YF +EH F++A ++LE HR ++ +V K+W + E +++K
Sbjct: 366 PTPLPTNDVDVYFETSADDNEHARFQKAKEQLEIRHRNRMDRVKKEWEEAE-----LQAK 420
Query: 378 SPGVAEDFKQKMTLRFQQTVQSLEEEGNAEKHQLIVMHQQRVAARINQHKKDAMNCYIEA 437
+ AE +Q + FQ V++LE+E +EK QL+ H RV A +N ++ A+ Y+ A
Sbjct: 421 NLPKAE--RQTLIQHFQAMVKALEKEAASEKQQLVETHLARVEAMLNDRRRMALENYLAA 478
Query: 438 LNDVSLNTHKVQKCLQKLLRALHKDRHHTIAHYKHLLATNLDFAVKEKPMTLEHLVDIDH 497
L H++ + L++ +RA +KDR HTI HY+H+LA + + A + K + HL I+
Sbjct: 479 LQSDPPRPHRILQALRRYVRAENKDRLHTIRHYQHVLAVDPEKAAQMKSQVMTHLHVIEE 538
Query: 498 TINQSMTMLQRHPALAVKISELMQDYMQALR--------SKDETPGSLLSLTREAEE 546
NQS+++L + P +A +I E + + +Q R S ETP + + E+EE
Sbjct: 539 RRNQSLSLLYKVPYVAQEIQEEIDELLQEQRADMDQFTASISETPVDVRVSSEESEE 595
Score = 57.4 bits (137), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 9/78 (11%)
Query: 208 SKGVYVTVVFAGLAVMAAVFIAMTVLKRRSARSPQNLCNVFFYFQGFIEVDQAATPEERH 267
S + ++ +A+ + I++ +L++R + + G +EVD TPEERH
Sbjct: 691 SSSALIGLLVIAVAIATVIVISLVMLRKRQYGTISH---------GIVEVDPMLTPEERH 741
Query: 268 VANMQINGYENPTYKYFE 285
+ MQ +GYENPTYKY E
Sbjct: 742 LNKMQNHGYENPTYKYLE 759
>sp|Q06335|APLP2_MOUSE Amyloid-like protein 2 OS=Mus musculus GN=Aplp2 PE=1 SV=4
Length = 707
Score = 116 bits (291), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 49/112 (43%), Positives = 72/112 (64%), Gaps = 1/112 (0%)
Query: 1 IYPKHDITNIVESSNYVKITNWCKVGHSKCKHTDWVKPYRCLEGPFQSDALLVPEHCVFD 60
IYP+ ITN++E++ V I +WC+ +CK + V P++CL G F SD LLVP++C F
Sbjct: 94 IYPELQITNVMEANQPVNIDSWCRRDKRQCK-SHIVIPFKCLVGEFVSDVLLVPDNCQFF 152
Query: 61 HIHNQSKCWEYERWNQTAAQSCLERDLSLRSFAMLLPCGISLFAGVEFVCCP 112
H C +++RW+ ++CL L+L S+ MLLPCG+ F G E+VCCP
Sbjct: 153 HQERMEVCEKHQRWHTLVKEACLTEGLTLYSYGMLLPCGVDQFHGTEYVCCP 204
Score = 114 bits (284), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 73/247 (29%), Positives = 128/247 (51%), Gaps = 13/247 (5%)
Query: 289 YDSYENIVSPSSGPASSTTTPTSTATTKSHATTRVPTP------DPYFTHFEPKDEHHAF 342
YD ++ P ++ T + H PTP D YF +EH F
Sbjct: 275 YDPFKGDDYNEENPTEPSSEGTISDKEIVHDVKVPPTPLPTNDVDVYFETSADDNEHARF 334
Query: 343 KEALQRLEEMHREKVTKVMKDWSDLEERYQDMRSKSPGVAEDFKQKMTLRFQQTVQSLEE 402
++A ++LE HR ++ +V K+W + E + +++ +Q + FQ V++LE+
Sbjct: 335 QKAKEQLEIRHRNRMDRVKKEWEEAELQAKNLPKTE-------RQTLIQHFQAMVKALEK 387
Query: 403 EGNAEKHQLIVMHQQRVAARINQHKKDAMNCYIEALNDVSLNTHKVQKCLQKLLRALHKD 462
E +EK QL+ H RV A +N ++ A+ Y+ AL H++ + L++ +RA +KD
Sbjct: 388 EAASEKQQLVETHLARVEAMLNDRRRIALENYLAALQSDPPRPHRILQALRRYVRAENKD 447
Query: 463 RHHTIAHYKHLLATNLDFAVKEKPMTLEHLVDIDHTINQSMTMLQRHPALAVKISELMQD 522
R HTI HY+H+LA + + A + K + HL I+ NQS+++L + P +A +I E + +
Sbjct: 448 RLHTIRHYQHVLAVDPEKAAQMKSQVMTHLHVIEERRNQSLSLLYKVPYVAQEIQEEIDE 507
Query: 523 YMQALRS 529
+Q R+
Sbjct: 508 LLQEQRA 514
Score = 58.2 bits (139), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 9/78 (11%)
Query: 208 SKGVYVTVVFAGLAVMAAVFIAMTVLKRRSARSPQNLCNVFFYFQGFIEVDQAATPEERH 267
S + ++ +A+ + I++ +L++R + G +EVD TPEERH
Sbjct: 635 SSNALIGLLVIAVAIATVIVISLVMLRKRQYGT---------ISHGIVEVDPMLTPEERH 685
Query: 268 VANMQINGYENPTYKYFE 285
+ MQ +GYENPTYKY E
Sbjct: 686 LNKMQNHGYENPTYKYLE 703
>sp|P15943|APLP2_RAT Amyloid-like protein 2 OS=Rattus norvegicus GN=Aplp2 PE=2 SV=2
Length = 765
Score = 115 bits (288), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 48/112 (42%), Positives = 72/112 (64%), Gaps = 1/112 (0%)
Query: 1 IYPKHDITNIVESSNYVKITNWCKVGHSKCKHTDWVKPYRCLEGPFQSDALLVPEHCVFD 60
IYP+ ITN++E++ V I +WC+ +C+ + V P++CL G F SD LLVPE+C F
Sbjct: 94 IYPELQITNVMEANQPVNIDSWCRRDKKQCR-SHIVIPFKCLVGEFVSDVLLVPENCQFF 152
Query: 61 HIHNQSKCWEYERWNQTAAQSCLERDLSLRSFAMLLPCGISLFAGVEFVCCP 112
H C +++RW+ ++CL ++L S+ MLLPCG+ F G E+VCCP
Sbjct: 153 HQERMEVCEKHQRWHTVVKEACLTEGMTLYSYGMLLPCGVDQFHGTEYVCCP 204
Score = 114 bits (284), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 71/212 (33%), Positives = 121/212 (57%), Gaps = 13/212 (6%)
Query: 324 PTP------DPYFTHFEPKDEHHAFKEALQRLEEMHREKVTKVMKDWSDLEERYQDMRSK 377
PTP D YF +EH F++A ++LE HR ++ +V K+W + E +++K
Sbjct: 368 PTPLPTNDVDVYFETSADDNEHARFQKAKEQLEIRHRSRMDRVKKEWEEAE-----LQAK 422
Query: 378 SPGVAEDFKQKMTLRFQQTVQSLEEEGNAEKHQLIVMHQQRVAARINQHKKDAMNCYIEA 437
+ AE +Q + FQ V++LE+E +EK QL+ H RV A +N ++ A+ Y+ A
Sbjct: 423 NLPKAE--RQTLIQHFQAMVKALEKEAASEKQQLVETHLARVEAMLNDRRRIALENYLAA 480
Query: 438 LNDVSLNTHKVQKCLQKLLRALHKDRHHTIAHYKHLLATNLDFAVKEKPMTLEHLVDIDH 497
L H++ + L++ +RA +KDR HTI HY+H+LA + + A + K + HL I+
Sbjct: 481 LQSDPPRPHRILQALRRYVRAENKDRLHTIRHYQHVLAVDPEKAAQMKSQVMTHLHVIEE 540
Query: 498 TINQSMTMLQRHPALAVKISELMQDYMQALRS 529
NQS+++L + P +A +I E + + +Q R+
Sbjct: 541 RRNQSLSLLYKVPYVAQEIQEEIDELLQEQRA 572
Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 9/78 (11%)
Query: 208 SKGVYVTVVFAGLAVMAAVFIAMTVLKRRSARSPQNLCNVFFYFQGFIEVDQAATPEERH 267
S + ++ +A+ + I++ +L++R + + G +EV TPEERH
Sbjct: 693 SSSALIGLLVIAVAIATVIVISLVMLRKRQYGTISH---------GIVEVHPMLTPEERH 743
Query: 268 VANMQINGYENPTYKYFE 285
+ MQ +GYENPTYKY E
Sbjct: 744 LNKMQNHGYENPTYKYLE 761
>sp|P51693|APLP1_HUMAN Amyloid-like protein 1 OS=Homo sapiens GN=APLP1 PE=1 SV=3
Length = 650
Score = 101 bits (252), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 68/245 (27%), Positives = 119/245 (48%), Gaps = 18/245 (7%)
Query: 286 IKDYDSYENIVSPSSGPASSTTTPTSTATTKSHATTRVPTPDP------YFTHFEPKDEH 339
+ DY V P T P ++ T + PTP P YF EH
Sbjct: 253 VDDY-----FVEPPQAEEEEETVPPPSSHTLAVVGKVTPTPRPTDGVDIYFGMPGEISEH 307
Query: 340 HAFKEALQRLEEMHREKVTKVMKDWSDLEERYQDMRSKSPGVAEDFKQKMTLRFQQTVQS 399
F A LEE ++ +VM++W+ D +SK+ + + +Q + FQ +Q+
Sbjct: 308 EGFLRAKMDLEERRMRQINEVMREWA-----MADNQSKN--LPKADRQALNEHFQSILQT 360
Query: 400 LEEEGNAEKHQLIVMHQQRVAARINQHKKDAMNCYIEALNDVSLNTHKVQKCLQKLLRAL 459
LEE+ + E+ +L+ H RV A IN ++ A+ ++ AL +V L++ LRA
Sbjct: 361 LEEQVSGERQRLVETHATRVIALINDQRRAALEGFLAALQADPPQAERVLLALRRYLRAE 420
Query: 460 HKDRHHTIAHYKHLLATNLDFAVKEKPMTLEHLVDIDHTINQSMTMLQRHPALAVKISEL 519
K++ HT+ HY+H+ A + + A + + HL I+ +NQS+ +L ++P LA ++
Sbjct: 421 QKEQRHTLRHYQHVAAVDPEKAQQMRFQVHTHLQVIEERVNQSLGLLDQNPHLAQELRPQ 480
Query: 520 MQDYM 524
+Q+ +
Sbjct: 481 IQELL 485
Score = 96.3 bits (238), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 46/114 (40%), Positives = 62/114 (54%), Gaps = 2/114 (1%)
Query: 1 IYPKHDITNIVESSNYVKITNWCKVGHS-KCKHTD-WVKPYRCLEGPFQSDALLVPEHCV 58
+YP+ I + +++ + + WC S C H V P+RCL G F S+ALLVPE C
Sbjct: 98 MYPELQIARVEQATQAIPMERWCGGSRSGSCAHPHHQVVPFRCLPGEFVSEALLVPEGCR 157
Query: 59 FDHIHNQSKCWEYERWNQTAAQSCLERDLSLRSFAMLLPCGISLFAGVEFVCCP 112
F H +C R +Q A ++C + L L MLLPCG F GVE+VCCP
Sbjct: 158 FLHQERMDQCESSTRRHQEAQEACSSQGLILHGSGMLLPCGSDRFRGVEYVCCP 211
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 46/92 (50%), Gaps = 16/92 (17%)
Query: 199 RHEVRPRGDSKGVYVTVVFAGLAVMAA-----VFIAMTVLKRRSARSPQNLCNVFFYFQG 253
R E+ P G GV V +GL +M A + ++M +L+R+ G
Sbjct: 567 RDELAPAG--TGVSREAV-SGLLIMGAGGGSLIVLSMLLLRRKKPYG--------AISHG 615
Query: 254 FIEVDQAATPEERHVANMQINGYENPTYKYFE 285
+EVD T EE+ + +Q +GYENPTY++ E
Sbjct: 616 VVEVDPMLTLEEQQLRELQRHGYENPTYRFLE 647
>sp|Q03157|APLP1_MOUSE Amyloid-like protein 1 OS=Mus musculus GN=Aplp1 PE=1 SV=1
Length = 653
Score = 99.4 bits (246), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 61/210 (29%), Positives = 108/210 (51%), Gaps = 13/210 (6%)
Query: 323 VPTPDP------YFTHFEPKDEHHAFKEALQRLEEMHREKVTKVMKDWSDLEERYQDMRS 376
PTP P YF EH F A LEE ++ +VM++W+ + S
Sbjct: 288 TPTPRPTDGVDVYFGMPGEIGEHEGFLRAKMDLEERRMRQINEVMREWAMAD-------S 340
Query: 377 KSPGVAEDFKQKMTLRFQQTVQSLEEEGNAEKHQLIVMHQQRVAARINQHKKDAMNCYIE 436
+S + + +Q + FQ +Q+LEE+ + E+ +L+ H RV A IN ++ A+ ++
Sbjct: 341 QSKNLPKADRQALNEHFQSILQTLEEQVSGERQRLVETHATRVIALINDQRRAALEGFLA 400
Query: 437 ALNDVSLNTHKVQKCLQKLLRALHKDRHHTIAHYKHLLATNLDFAVKEKPMTLEHLVDID 496
AL +V L++ LRA K++ HT+ HY+H+ A + + A + + HL I+
Sbjct: 401 ALQGDPPQAERVLMALRRYLRAEQKEQRHTLRHYQHVAAVDPEKAQQMRFQVQTHLQVIE 460
Query: 497 HTINQSMTMLQRHPALAVKISELMQDYMQA 526
+NQS+ +L ++P LA ++ +Q+ + A
Sbjct: 461 ERMNQSLGLLDQNPHLAQELRPQIQELLLA 490
Score = 92.4 bits (228), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 45/114 (39%), Positives = 62/114 (54%), Gaps = 2/114 (1%)
Query: 1 IYPKHDITNIVESSNYVKITNWCKVGHS-KCKHTD-WVKPYRCLEGPFQSDALLVPEHCV 58
+YP+ I + +++ + + WC S +C H V P+ CL G F S+ALLVPE C
Sbjct: 97 MYPELHIARVEQAAQAIPMERWCGGTRSGRCAHPHHEVVPFHCLPGEFVSEALLVPEGCR 156
Query: 59 FDHIHNQSKCWEYERWNQTAAQSCLERDLSLRSFAMLLPCGISLFAGVEFVCCP 112
F H +C R +Q A ++C + L L MLLPCG F GVE+VCCP
Sbjct: 157 FLHQERMDQCESSTRRHQEAQEACSSQGLILHGSGMLLPCGSDRFRGVEYVCCP 210
Score = 39.7 bits (91), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 23/33 (69%)
Query: 253 GFIEVDQAATPEERHVANMQINGYENPTYKYFE 285
G +EVD T EE+ + +Q +GYENPTY++ E
Sbjct: 618 GVVEVDPMLTLEEQQLRELQRHGYENPTYRFLE 650
>sp|Q95KA2|OPTN_MACFA Optineurin OS=Macaca fascicularis GN=OPTN PE=2 SV=2
Length = 571
Score = 35.8 bits (81), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 51/111 (45%), Gaps = 10/111 (9%)
Query: 114 KDKERERFLEKQRKEVHK------HEREELREEKARVKAAAEGRTYEPTGPSTPIPPGVD 167
K KE +F E Q KE + HE E+L+EE ++K +E + +PTG S P +
Sbjct: 78 KQKEERQFFETQSKEAKERLMALSHENEKLKEELGKLKGKSERSSEDPTGDSR--LPRAE 135
Query: 168 AHPPYSSQRHDTVQPAYAMSHDLSIGEPSYLRHEVRPRGDSKGVYVTVVFA 218
A Q V A DL +G S L+ ++ G S+ +V + A
Sbjct: 136 AEQE-KDQLRTQVTRLQAEKADL-LGIVSELQLKLNSSGSSEDSFVEIRMA 184
>sp|Q4PGG5|RAD5_USTMA DNA repair protein RAD5 OS=Ustilago maydis (strain 521 / FGSC 9021)
GN=RAD5 PE=3 SV=1
Length = 1387
Score = 33.5 bits (75), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 19/36 (52%)
Query: 297 SPSSGPASSTTTPTSTATTKSHATTRVPTPDPYFTH 332
P+ P S +TP S ATTKS PTPDP H
Sbjct: 186 GPAKRPKKSWSTPASVATTKSAPRHCSPTPDPRLRH 221
>sp|Q9Y608|LRRF2_HUMAN Leucine-rich repeat flightless-interacting protein 2 OS=Homo
sapiens GN=LRRFIP2 PE=1 SV=1
Length = 721
Score = 33.1 bits (74), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 293 ENIVSPSSGPASSTTTPTSTATTKSHATTRVPTPDPYFTHFEPKDEHHAFKEALQRLEEM 352
EN PSS ++S TTP S +++ + DP + E +D + K+ +Q +E
Sbjct: 302 ENYTRPSSRNSASATTPLSGNSSRRGSGDTSSLIDPDTSLSELRD-IYDLKDQIQDVEGR 360
Query: 353 HREKVTKVMKDWSDLEERYQ 372
+ + + ++ + S++EE+Y+
Sbjct: 361 YMQGLKELKESLSEVEEKYK 380
>sp|Q9BSW2|EFC4B_HUMAN EF-hand calcium-binding domain-containing protein 4B OS=Homo
sapiens GN=EFCAB4B PE=1 SV=1
Length = 395
Score = 33.1 bits (74), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 35/158 (22%), Positives = 66/158 (41%), Gaps = 33/158 (20%)
Query: 352 MHREKVTKVMKDWSDLEERYQDMRSKSPGVAEDFKQKMTL-------------------- 391
M R KV++D SD+++ + ++ + P + +F+ +T
Sbjct: 164 MDRLGAQKVLEDESDVKQLWLQLKKEEPHLLSNFEDFLTRIISQLQEAHEEKNELECALK 223
Query: 392 --------RFQQTVQSLEEEGNAEKHQLIVMHQQRVAARINQHKKDAMNCYIEALNDVSL 443
Q + +E++ +EK Q ++ +R AR +Q + + C + L ++
Sbjct: 224 RKIAAYDEEIQHLYEEMEQQIKSEKEQFLLKDTERFQAR-SQELEQKLLCKEQELEQLT- 281
Query: 444 NTHKVQKCLQKLLRALHKDRHHTIAHYKHLLATNLDFA 481
+ QK L+ ALH D+H T A L TN + A
Sbjct: 282 ---QKQKRLEGQCTALHHDKHETKAENTKLKLTNQELA 316
>sp|Q96CV9|OPTN_HUMAN Optineurin OS=Homo sapiens GN=OPTN PE=1 SV=2
Length = 577
Score = 33.1 bits (74), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 51/111 (45%), Gaps = 10/111 (9%)
Query: 114 KDKERERFLEKQRKEVHK------HEREELREEKARVKAAAEGRTYEPTGPSTPIPPGVD 167
K KE +F E Q KE + HE E+L+EE ++K +E + +PT S P +
Sbjct: 78 KQKEERQFFEIQSKEAKERLMALSHENEKLKEELGKLKGKSERSSEDPTDDSR--LPRAE 135
Query: 168 AHPPYSSQRHDTVQPAYAMSHDLSIGEPSYLRHEVRPRGDSKGVYVTVVFA 218
A R V+ A DL +G S L+ ++ G S+ +V + A
Sbjct: 136 AEQEKDQLRTQVVR-LQAEKADL-LGIVSELQLKLNSSGSSEDSFVEIRMA 184
>sp|A8MZ36|EVPLL_HUMAN Envoplakin-like protein OS=Homo sapiens GN=EVPLL PE=2 SV=1
Length = 301
Score = 33.1 bits (74), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 4/82 (4%)
Query: 324 PTPDPYFTHFEPKDEHHAFKEALQRLEEMHREKVTKVMKDWSDLEERYQDMRSKSPGVAE 383
PT EP HA + +L + ++ + +DWSDL +R + E
Sbjct: 169 PTEGGVVARAEPGQPVHALQGCTWQLSALAEQQRRILQQDWSDLMADPAGVRREY----E 224
Query: 384 DFKQKMTLRFQQTVQSLEEEGN 405
FKQ L +Q+V LEE+G
Sbjct: 225 HFKQHELLSQEQSVNQLEEDGK 246
>sp|Q5R923|OPTN_PONAB Optineurin OS=Pongo abelii GN=OPTN PE=2 SV=1
Length = 527
Score = 33.1 bits (74), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 51/111 (45%), Gaps = 10/111 (9%)
Query: 114 KDKERERFLEKQRKEVHK------HEREELREEKARVKAAAEGRTYEPTGPSTPIPPGVD 167
K KE +F E Q KE + HE E+L+EE ++K +E + +PT S P +
Sbjct: 78 KQKEERQFFEIQSKEAKERLMALSHENEKLKEELGKLKGKSERSSEDPTDDSR--LPRAE 135
Query: 168 AHPPYSSQRHDTVQPAYAMSHDLSIGEPSYLRHEVRPRGDSKGVYVTVVFA 218
A R V+ A DL +G S L+ ++ G S+ +V + A
Sbjct: 136 AEQEKDQLRTQVVR-LQAEKADL-LGIVSELQLKLNSSGSSEDSFVEIRMA 184
>sp|Q9RYW7|RIMO_DEIRA Ribosomal protein S12 methylthiotransferase RimO OS=Deinococcus
radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 /
LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422)
GN=rimO PE=3 SV=1
Length = 504
Score = 32.7 bits (73), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
Query: 335 PKDEHHAFKEALQRLEEMHREKVTKVMKDWSDLEERYQDMRSKSPGVAEDFKQKMTLRFQ 394
P + F+E LQ LE+ ++V +SD+EE D + V E+ KQ+ RF
Sbjct: 344 PGETEEDFQELLQFLEDARLDRVGAF--PYSDIEE--ADANALPGAVPEEVKQERLARFM 399
Query: 395 QTVQSLEEEGNAEK 408
+ Q + E +EK
Sbjct: 400 EVAQRISTEKLSEK 413
>sp|Q861Q8|OPTN_MACMU Optineurin OS=Macaca mulatta GN=OPTN PE=1 SV=1
Length = 571
Score = 32.3 bits (72), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 50/111 (45%), Gaps = 10/111 (9%)
Query: 114 KDKERERFLEKQRKEVHK------HEREELREEKARVKAAAEGRTYEPTGPSTPIPPGVD 167
K KE +F E Q KE + HE E+L+EE ++K +E + +PT S P +
Sbjct: 78 KQKEERQFFETQSKEAKERLMALSHENEKLKEELGKLKGKSERSSEDPTDDSR--LPRAE 135
Query: 168 AHPPYSSQRHDTVQPAYAMSHDLSIGEPSYLRHEVRPRGDSKGVYVTVVFA 218
A Q V A DL +G S L+ ++ G S+ +V + A
Sbjct: 136 AEQE-KDQLRTQVTRLQAEKADL-LGIVSELQLKLNSSGSSEDSFVEIRMA 184
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.131 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 209,046,456
Number of Sequences: 539616
Number of extensions: 8787032
Number of successful extensions: 47600
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 183
Number of HSP's that attempted gapping in prelim test: 46645
Number of HSP's gapped (non-prelim): 1055
length of query: 564
length of database: 191,569,459
effective HSP length: 123
effective length of query: 441
effective length of database: 125,196,691
effective search space: 55211740731
effective search space used: 55211740731
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)