Query psy5197
Match_columns 564
No_of_seqs 91 out of 113
Neff 3.8
Searched_HMMs 46136
Date Fri Aug 16 19:47:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5197.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5197hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3540|consensus 100.0 4E-141 8E-146 1105.7 26.7 365 1-542 78-443 (615)
2 PF12925 APP_E2: E2 domain of 100.0 1.2E-78 2.6E-83 582.4 14.2 185 323-507 9-193 (193)
3 smart00006 A4_EXTRA amyloid A4 100.0 2.7E-64 5.8E-69 470.5 6.3 112 1-112 53-165 (165)
4 PF12924 APP_Cu_bd: Copper-bin 100.0 1.2E-35 2.6E-40 237.2 0.7 58 56-113 1-58 (58)
5 PF02177 APP_N: Amyloid A4 N-t 100.0 7.5E-31 1.6E-35 230.7 0.2 55 1-55 47-102 (102)
6 PF10515 APP_amyloid: beta-amy 99.6 2.8E-16 6.1E-21 123.5 1.5 52 225-285 1-52 (52)
7 KOG3540|consensus 98.4 2E-07 4.3E-12 100.8 3.1 33 253-286 581-613 (615)
8 PF14643 DUF4455: Domain of un 92.8 19 0.0004 40.0 22.1 213 337-555 86-312 (473)
9 COG4942 Membrane-bound metallo 83.0 35 0.00076 38.0 14.8 124 340-475 38-171 (420)
10 KOG1029|consensus 83.0 68 0.0015 38.6 17.5 33 400-432 396-431 (1118)
11 PF14643 DUF4455: Domain of un 80.1 76 0.0016 35.3 16.4 85 348-447 156-241 (473)
12 COG4913 Uncharacterized protei 79.6 30 0.00065 41.2 13.3 115 412-530 788-918 (1104)
13 KOG1853|consensus 77.8 76 0.0016 33.7 14.4 121 339-504 26-147 (333)
14 PF03938 OmpH: Outer membrane 77.2 51 0.0011 30.4 12.0 77 336-415 28-107 (158)
15 PRK15359 type III secretion sy 76.3 48 0.001 30.4 11.5 92 419-512 31-125 (144)
16 PF11657 Activator-TraM: Trans 76.2 26 0.00055 33.7 9.8 91 341-439 39-131 (144)
17 PF13801 Metal_resist: Heavy-m 70.2 50 0.0011 27.9 9.5 52 428-479 69-121 (125)
18 smart00502 BBC B-Box C-termina 69.9 71 0.0015 27.4 11.0 45 380-424 35-79 (127)
19 PF11264 ThylakoidFormat: Thyl 66.6 29 0.00064 35.3 8.4 121 411-531 29-211 (216)
20 PF12998 ING: Inhibitor of gro 66.2 40 0.00087 28.9 8.1 99 430-532 2-103 (105)
21 COG2733 Predicted membrane pro 64.8 2.4E+02 0.0052 31.6 15.4 110 452-561 238-366 (415)
22 PLN03060 inositol phosphatase- 64.1 32 0.00069 34.9 8.0 119 411-530 32-205 (206)
23 TIGR03060 PS_II_psb29 photosys 64.0 31 0.00067 35.2 7.9 120 411-530 34-213 (214)
24 TIGR00383 corA magnesium Mg(2+ 62.9 41 0.00089 34.5 8.8 30 386-415 140-169 (318)
25 cd07625 BAR_Vps17p The Bin/Amp 61.7 1.3E+02 0.0028 31.0 11.9 114 340-474 112-228 (230)
26 PF06188 HrpE: HrpE/YscL/FliH 60.6 51 0.0011 32.5 8.7 79 365-458 48-126 (191)
27 KOG4643|consensus 60.1 4.3E+02 0.0094 33.0 18.1 174 346-528 263-453 (1195)
28 KOG3901|consensus 59.8 15 0.00034 33.8 4.5 56 392-452 28-83 (109)
29 PF03179 V-ATPase_G: Vacuolar 58.9 1.2E+02 0.0025 26.8 9.8 85 343-438 14-101 (105)
30 PF13851 GAS: Growth-arrest sp 58.2 2E+02 0.0044 28.6 14.1 111 339-460 85-195 (201)
31 PF13414 TPR_11: TPR repeat; P 56.9 43 0.00094 25.9 6.1 53 424-478 16-69 (69)
32 PRK10780 periplasmic chaperone 55.7 1.5E+02 0.0033 28.2 10.7 39 337-375 36-74 (165)
33 PF02601 Exonuc_VII_L: Exonucl 55.0 1.4E+02 0.003 31.0 11.1 37 388-424 191-227 (319)
34 PF01031 Dynamin_M: Dynamin ce 54.5 2.6E+02 0.0056 28.7 14.6 166 357-528 82-255 (295)
35 PF09731 Mitofilin: Mitochondr 51.0 2E+02 0.0044 32.4 12.4 31 397-427 343-373 (582)
36 PRK00286 xseA exodeoxyribonucl 50.7 1.5E+02 0.0033 32.2 11.1 42 329-370 256-297 (438)
37 KOG2150|consensus 50.1 1.1E+02 0.0025 35.3 10.2 107 348-461 81-193 (575)
38 PRK13266 Thf1-like protein; Re 49.8 80 0.0017 32.5 8.2 120 411-530 34-215 (225)
39 KOG1265|consensus 49.1 1.2E+02 0.0025 37.3 10.3 40 388-427 1128-1167(1189)
40 PLN00047 photosystem II biogen 48.8 69 0.0015 34.1 7.8 132 389-531 73-259 (283)
41 PRK15178 Vi polysaccharide exp 47.7 1E+02 0.0022 34.6 9.2 77 357-439 288-372 (434)
42 cd07664 BAR_SNX2 The Bin/Amphi 47.4 3.3E+02 0.0072 27.9 14.1 92 428-530 108-202 (234)
43 PRK15359 type III secretion sy 46.2 87 0.0019 28.7 7.3 65 427-493 74-140 (144)
44 KOG4295|consensus 45.5 7.3 0.00016 39.0 0.1 44 230-289 92-135 (295)
45 PRK15366 type III secretion sy 45.3 85 0.0018 27.8 6.5 59 465-528 2-60 (80)
46 COG1536 FliG Flagellar motor s 44.8 90 0.0019 33.8 8.1 92 414-520 147-241 (339)
47 COG0497 RecN ATPase involved i 44.6 5.7E+02 0.012 29.8 17.6 154 338-509 140-316 (557)
48 PF07739 TipAS: TipAS antibiot 42.8 96 0.0021 26.9 6.7 56 362-420 13-71 (118)
49 PF07739 TipAS: TipAS antibiot 42.5 37 0.00081 29.4 4.1 74 340-415 13-88 (118)
50 PLN03088 SGT1, suppressor of 40.5 2.3E+02 0.0049 30.2 10.3 57 421-479 12-68 (356)
51 PRK14474 F0F1 ATP synthase sub 39.2 2.4E+02 0.0052 29.0 9.9 45 386-430 66-110 (250)
52 PF10189 DUF2356: Conserved pr 38.2 38 0.00083 34.9 3.9 51 476-526 176-227 (230)
53 PF08941 USP8_interact: USP8 i 37.4 15 0.00032 36.6 0.9 66 388-465 4-76 (179)
54 KOG2391|consensus 37.4 6.1E+02 0.013 28.1 13.2 68 348-436 218-285 (365)
55 PF12128 DUF3584: Protein of u 36.2 9.7E+02 0.021 30.1 20.6 70 449-525 716-785 (1201)
56 KOG0319|consensus 35.7 2.4E+02 0.0052 33.8 10.1 48 402-453 624-671 (775)
57 TIGR00237 xseA exodeoxyribonuc 35.5 2.9E+02 0.0062 30.6 10.4 94 328-443 250-343 (432)
58 PF03704 BTAD: Bacterial trans 35.2 3.3E+02 0.0071 24.3 9.1 49 425-475 76-124 (146)
59 PF13926 DUF4211: Domain of un 33.0 1.1E+02 0.0023 28.9 5.8 43 386-428 33-84 (153)
60 PF11981 DUF3482: Domain of un 32.3 3.3E+02 0.0072 28.9 9.8 40 434-473 75-115 (292)
61 TIGR00634 recN DNA repair prot 31.5 8.2E+02 0.018 27.8 16.2 24 353-376 159-182 (563)
62 cd00109 KU BPTI/Kunitz family 31.3 26 0.00057 27.0 1.2 23 233-256 16-38 (54)
63 KOG3229|consensus 31.2 6.2E+02 0.013 26.3 13.8 140 362-526 25-171 (227)
64 PF15463 ECM11: Extracellular 30.5 3.4E+02 0.0075 25.4 8.7 27 342-368 51-78 (139)
65 cd00189 TPR Tetratricopeptide 30.0 2.2E+02 0.0047 20.6 9.4 52 425-478 48-99 (100)
66 PF13371 TPR_9: Tetratricopept 29.9 2.1E+02 0.0046 22.2 6.2 57 422-480 6-62 (73)
67 PRK00286 xseA exodeoxyribonucl 29.3 6.8E+02 0.015 27.3 11.9 43 461-506 330-373 (438)
68 PF14559 TPR_19: Tetratricopep 29.2 1.6E+02 0.0034 22.6 5.3 55 423-479 3-57 (68)
69 PF11740 KfrA_N: Plasmid repli 29.0 3.9E+02 0.0085 23.5 8.4 70 352-423 32-101 (120)
70 PF12128 DUF3584: Protein of u 28.9 1.3E+03 0.027 29.1 19.3 60 420-480 745-810 (1201)
71 TIGR01069 mutS2 MutS2 family p 28.8 8.1E+02 0.018 29.4 13.2 106 343-455 500-605 (771)
72 PRK00409 recombination and DNA 28.8 7E+02 0.015 29.9 12.7 90 343-439 505-594 (782)
73 KOG0550|consensus 28.7 5.5E+02 0.012 29.4 11.0 140 389-531 222-375 (486)
74 cd06897 PX_SNARE The phosphoin 28.7 53 0.0012 28.7 2.8 18 425-442 74-91 (108)
75 PF03938 OmpH: Outer membrane 27.8 2.4E+02 0.0053 25.9 7.1 26 389-414 88-113 (158)
76 COG1390 NtpE Archaeal/vacuolar 27.8 3.6E+02 0.0077 27.0 8.7 43 365-414 24-66 (194)
77 KOG0517|consensus 27.6 1.1E+03 0.024 31.9 14.2 130 388-532 415-549 (2473)
78 smart00131 KU BPTI/Kunitz fami 27.5 33 0.00071 26.4 1.1 22 233-255 16-37 (53)
79 TIGR02795 tol_pal_ybgF tol-pal 27.3 3.5E+02 0.0076 22.2 7.9 58 420-479 10-71 (119)
80 PRK11788 tetratricopeptide rep 27.0 6.9E+02 0.015 25.5 13.0 116 361-479 154-281 (389)
81 PF15556 Zwint: ZW10 interacto 26.4 4.3E+02 0.0092 27.5 8.9 94 352-463 56-149 (252)
82 cd06880 PX_SNX22 The phosphoin 26.4 65 0.0014 28.9 3.0 19 425-443 72-90 (110)
83 PLN02867 Probable galacturonos 26.3 1.2E+02 0.0026 35.0 5.6 57 387-446 137-201 (535)
84 PRK11447 cellulose synthase su 25.9 1E+03 0.023 29.3 13.8 109 359-481 73-181 (1157)
85 cd07665 BAR_SNX1 The Bin/Amphi 25.9 7.5E+02 0.016 25.5 14.2 92 429-531 109-203 (234)
86 TIGR00990 3a0801s09 mitochondr 25.5 1E+03 0.022 26.9 12.9 52 427-480 381-432 (615)
87 KOG3444|consensus 25.0 47 0.001 31.1 1.8 26 476-501 21-46 (121)
88 PF14726 RTTN_N: Rotatin, an a 24.8 2.3E+02 0.005 25.6 6.1 70 426-526 27-97 (98)
89 PF06160 EzrA: Septation ring 24.8 1.1E+03 0.024 27.1 18.3 168 340-530 60-234 (560)
90 COG2956 Predicted N-acetylgluc 24.7 1E+03 0.022 26.6 12.0 150 330-513 130-283 (389)
91 KOG0994|consensus 24.6 1.6E+03 0.036 29.1 16.2 96 431-531 1251-1346(1758)
92 PF05879 RHD3: Root hair defec 24.2 1.2E+03 0.026 27.9 13.4 116 393-528 400-519 (742)
93 cd07288 PX_SNX15 The phosphoin 23.9 56 0.0012 29.9 2.2 21 422-442 83-103 (118)
94 PRK06669 fliH flagellar assemb 23.9 8.1E+02 0.018 25.2 13.4 84 386-469 72-163 (281)
95 PRK09546 zntB zinc transporter 23.8 8.5E+02 0.018 25.4 11.5 26 387-412 149-174 (324)
96 TIGR03090 SASP_tlp small, acid 23.7 3.1E+02 0.0066 23.9 6.3 18 423-440 48-65 (70)
97 PF10454 DUF2458: Protein of u 23.5 3.7E+02 0.0081 25.9 7.7 89 363-460 7-111 (150)
98 KOG0579|consensus 23.4 1.4E+03 0.031 28.0 17.1 126 388-523 980-1110(1187)
99 KOG0548|consensus 23.2 2.8E+02 0.0061 32.1 7.7 76 355-442 433-512 (539)
100 cd07630 BAR_SNX_like The Bin/A 23.1 3.8E+02 0.0081 26.8 7.9 85 337-438 96-181 (198)
101 PRK13895 conjugal transfer pro 22.7 7.3E+02 0.016 24.3 9.3 88 343-438 41-130 (144)
102 PRK10370 formate-dependent nit 22.5 3.2E+02 0.007 26.6 7.2 52 428-481 56-107 (198)
103 cd06878 PX_SNX25 The phosphoin 22.5 60 0.0013 30.0 2.1 18 425-442 95-112 (127)
104 PF08359 TetR_C_4: YsiA-like p 22.0 4.8E+02 0.01 22.9 7.7 71 433-503 11-81 (133)
105 KOG0994|consensus 21.8 1.9E+03 0.04 28.7 16.6 85 351-441 1273-1366(1758)
106 cd06872 PX_SNX19_like_plant Th 21.7 64 0.0014 28.9 2.0 18 425-442 75-92 (107)
107 COG3652 Predicted outer membra 21.4 3.8E+02 0.0083 26.8 7.3 42 386-427 117-163 (170)
108 cd06882 PX_p40phox The phospho 21.1 86 0.0019 28.9 2.8 19 425-443 85-103 (123)
109 KOG4571|consensus 21.0 1.5E+02 0.0033 31.8 4.8 46 362-419 248-293 (294)
110 TIGR02289 M3_not_pepF oligoend 20.7 4.5E+02 0.0098 29.7 8.8 111 386-498 121-237 (549)
111 PF06705 SF-assemblin: SF-asse 20.7 8.9E+02 0.019 24.5 16.8 111 416-534 76-198 (247)
112 PRK03830 small acid-soluble sp 20.6 4.1E+02 0.0088 23.3 6.5 44 388-440 20-64 (73)
113 cd06885 PX_SNX17_31 The phosph 20.6 73 0.0016 28.3 2.1 19 424-442 70-88 (104)
114 KOG0612|consensus 20.3 1.9E+03 0.042 28.3 16.9 148 356-508 495-681 (1317)
115 PF10163 EnY2: Transcription f 20.1 2E+02 0.0044 24.9 4.7 81 483-563 1-84 (86)
No 1
>KOG3540|consensus
Probab=100.00 E-value=3.8e-141 Score=1105.74 Aligned_cols=365 Identities=38% Similarity=0.674 Sum_probs=316.1
Q ss_pred CCCCCccccccccCcccccccccccCCCCCC-CCceeeeeeccCCCcCCCccccCCccccccccCcccccchhhhHHhHH
Q psy5197 1 IYPKHDITNIVESSNYVKITNWCKVGHSKCK-HTDWVKPYRCLEGPFQSDALLVPEHCVFDHIHNQSKCWEYERWNQTAA 79 (564)
Q Consensus 1 vYP~lqITNVVEa~q~V~I~nWCk~g~~~Ck-h~h~V~PyRCLvGeFvSDaLLVPe~CkF~H~e~md~C~~~~~Wh~vAk 79 (564)
|||++|||||||++|+|+|+|||+.|+++|| +.|.|+|||||+|+|+|+|||||++|+|+|+++||+|++++|||++|+
T Consensus 78 aYPelqitnV~ea~qaVSiddwc~~grspck~~~h~Vrp~~Cl~gefvseallvp~kC~ffh~ermD~cEn~~hwh~ea~ 157 (615)
T KOG3540|consen 78 AYPELQITNVVEAFQAVSIDDWCRTGRSPCKFCLHPVRPYRCLAGEFVSEALLVPEKCQFFHQERMDQCENNQHWHKEAM 157 (615)
T ss_pred hChHHHHHHHHHhhccccHHHHhccCCCcccccCcccccceeecCcchhhhccCcccchhhhccccccccchHHHHHHHH
Confidence 7999999999999999999999999999999 559999999999999999999999999999999999999999999999
Q ss_pred hhcccccccccceecccccccCccceeeeeccCCCchhhHHHHhhhhhhhchhhHHHHHHHHHHHHHhhhCCCCCCCCCC
Q psy5197 80 QSCLERDLSLRSFAMLLPCGISLFAGVEFVCCPMKDKERERFLEKQRKEVHKHEREELREEKARVKAAAEGRTYEPTGPS 159 (564)
Q Consensus 80 eaC~~~~m~LhsygMLLPCGid~F~GVEfVCCP~~~~~~~~~~~~~~~~~~~~E~ee~~eek~~~E~~~~~~~~~~~~~~ 159 (564)
++|+++||+|||||||||||+|+|+|||||||| .+..+..+
T Consensus 158 etC~tk~mil~~~gmLlPCg~D~F~GvEfVCCP-~~~~~~~~-------------------------------------- 198 (615)
T KOG3540|consen 158 ETCSTKGMILHSYGMLLPCGLDMFRGVEFVCCP-NDQTDKVD-------------------------------------- 198 (615)
T ss_pred HHhccCCeeeecccceeccccccccCceEEeCC-CCCCCccc--------------------------------------
Confidence 999999999999999999999999999999999 43122100
Q ss_pred CCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCcccccccccCCCCCCceeeeeehhhhhHHHHHHHHHHhhhhccC
Q psy5197 160 TPIPPGVDAHPPYSSQRHDTVQPAYAMSHDLSIGEPSYLRHEVRPRGDSKGVYVTVVFAGLAVMAAVFIAMTVLKRRSAR 239 (564)
Q Consensus 160 ~~~~~~~~~~~~~~~~~ed~~~~~~~~~~D~~~~e~~~~~~~~~~~~d~~~~~~~~~~~~~a~~~~~~~~~~~~~r~~~~ 239 (564)
+..+.+++. + ++.+++.. +|+-
T Consensus 199 --~~~~eede~--d---d~d~~d~~---ede~------------------------------------------------ 220 (615)
T KOG3540|consen 199 --VAKTEEDED--D---DDDYDDGY---EDEY------------------------------------------------ 220 (615)
T ss_pred --ccccCcccC--C---cccccccc---cccc------------------------------------------------
Confidence 000000000 0 00000000 0000
Q ss_pred CCCCcccccccccccccccCCCChhhhhhhhccccCCCCCCcccccccccCCccccCCCCCCCCCCCcCCCccccccccC
Q psy5197 240 SPQNLCNVFFYFQGFIEVDQAATPEERHVANMQINGYENPTYKYFEIKDYDSYENIVSPSSGPASSTTTPTSTATTKSHA 319 (564)
Q Consensus 240 ~p~~~~~~~~y~~G~~~~dq~~t~ee~~~~n~~~n~~Enp~Y~yfe~k~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (564)
+| |..+| |..+ |
T Consensus 221 -----------------------~e------------esDd~--------deEe-------------------------p 232 (615)
T KOG3540|consen 221 -----------------------SE------------ESDDE--------DEEE-------------------------P 232 (615)
T ss_pred -----------------------cc------------ccccc--------cccC-------------------------C
Confidence 00 00000 0000 0
Q ss_pred CCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHH
Q psy5197 320 TTRVPTPDPYFTHFEPKDEHHAFKEALQRLEEMHREKVTKVMKDWSDLEERYQDMRSKSPGVAEDFKQKMTLRFQQTVQS 399 (564)
Q Consensus 320 ~t~~pt~D~Yfe~~~~~~EH~~F~~Ak~~LE~rhr~rm~~VmKEW~eAe~q~knL~~adPkaae~~rq~l~qhFQ~~V~s 399 (564)
...+|||......|||++||+||+|||+|||+||++|||||++||+|+|| |||| ||+||||||+||+|
T Consensus 233 ----~sqePyf~v~n~TnEH~~F~kAkmrleekhr~rmd~VmkEW~~ae~qaKn-PKAe-------kqalnqhFQ~~v~s 300 (615)
T KOG3540|consen 233 ----SSQEPYFDVANFTNEHADFQKAKMRLEEKHRKRMDKVMKEWEEAETQAKN-PKAE-------KQALNQHFQKTVSS 300 (615)
T ss_pred ----cccCCceehhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-chhh-------HHHHHHHHHHHHHH
Confidence 01224777777779999999999999999999999999999999999999 8888 99999999999999
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHccCCCChhHHHHHHHHHHHHHhhhhhhHHHHHHHHhhcChh
Q psy5197 400 LEEEGNAEKHQLIVMHQQRVAARINQHKKDAMNCYIEALNDVSLNTHKVQKCLQKLLRALHKDRHHTIAHYKHLLATNLD 479 (564)
Q Consensus 400 LEeE~a~ErqqLvetH~aRVeA~LNdrRR~Ale~Yl~ALq~~pP~phrVl~aLkrYvRAe~KDR~HTirHYqHv~avdPe 479 (564)
||+|+++||||||+||++||+||||||||+||||||+|||++||+|||||++||||||||||||+|||||||||++|||+
T Consensus 301 LEee~a~erqqlvetH~~RV~AmlNdrrR~Ale~ylaALqa~pprp~~Vl~aLkrYvRAEqKdr~HTlrhyqHv~~vDpk 380 (615)
T KOG3540|consen 301 LEEEAARERQQLVETHEARVEAMLNDRRRDALENYLAALQADPPRPHRVLQALKRYVRAEQKDRMHTLRHYQHVLAVDPK 380 (615)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcchhHHHHHHHHHHHhhhhhhhhhhchhhHHHhHHHHHHHHHHhhccCCCCcccccCCH
Q psy5197 480 FAVKEKPMTLEHLVDIDHTINQSMTMLQRHPALAVKISELMQDYMQALRSKDETPGSLLSLTR 542 (564)
Q Consensus 480 kAaqmk~qvltHL~vIeeRmNQSLsLLyr~P~la~eI~~~idellq~~Rs~~d~p~~l~s~t~ 542 (564)
||+||||||||||||||+||||||+|||++|.|+++||++|++|||.+++.+|.+.+.++.++
T Consensus 381 kAaqmk~qV~thLrvIeeR~NqsLslL~~~P~vaqeirdev~ell~~e~~~~de~~an~~~~P 443 (615)
T KOG3540|consen 381 KAAQMKSQVMTHLRVIEERINQSLSLLYDVPAVAQEIRDEVDELLQVEDSHDDEFSANTTAKP 443 (615)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchhHHHhcChHHHHHHHHHHHHHHhhhhcChhhhccccccCC
Confidence 999999999999999999999999999999999999999999999999999999988766655
No 2
>PF12925 APP_E2: E2 domain of amyloid precursor protein; InterPro: IPR024329 Amyloid-beta precursor protein (APP, or A4) is associated with Alzheimer's disease (AD), because one of its breakdown products, amyloid-beta (A-beta), aggregates to form amyloid or senile plaques [, ]. Mutations in APP or in proteins that process APP have been linked with early-onset, familial AD. Individuals with Down's syndrome carry an extra copy of chromosome 21, which contains the APP gene, and almost invariably develop amyloid plaques and Alzheimer's symptoms. APP is important for the neurogenesis and neuronal regeneration, either through the intact protein, or through its many breakdown products []. APP consists of a large N-terminal extracellular region containing heparin-binding and copper-binding sites, a short hydrophobic transmembrane domain, and a short C-terminal intracellular domain. The N-terminal region is similar in structure to cysteine-rich growth factors and appears to function as a cell surface receptor, contributing to neurite growth, neuronal adhesion, axonogenesis and cell mobility []. APP acts as a kinesin I membrane receptor to mediate the axonal transport of beta-secretase and presenilin 1. The N-terminal domain can regulate neurite outgrowth through its binding to heparin and collagen I and IV, which are components of the extracellular matrix. APP is also coupled to apoptosis-inducing pathways, and is involved in copper homeostasis/oxidative stress through copper ion reduction, where copper-metallated APP induces neuronal death []. The C-terminal intracellular domain appears to be involved in transcription regulation through protein-protein interactions. APP can promote transcription activation through binding to APBB1/Tip60, and may bind to the adaptor protein FE65 to transactivate a wide variety of different promoters. APP can be processed by different sets of enzymes: In the non-amyloidogenic (non-plaque-forming) pathway, APP is cleaved by alpha-secretase to yield a soluble N-terminal sAPP-alpha (neuroprotective) and a membrane-bound CTF-alpha. CTF-alpha is broken-down by presenilin-containing gamma-secretase to yield soluble p3 and membrane-bound AICD (nuclear signalling). In the amyloidogenic pathway (plaque-forming), APP is broken down by beta-secretase to yield soluble sAPP-beta and membrane-bound CTF-beta. CTF-beta is broken down by gamma-secretase to yield soluble amyloid-beta and membrane-bound AICD. Amyloid-beta is required for neuronal function, but can aggregate to form amyloid plaques that seem to disrupt brain cells by clogging points of cell-cell contact. The E2 domain is the largest of the conserved domains in the amyloidogenic glycoproteins. The structure of E2 consists of two coiled-coil sub-structures connected through a continuous helix, and bears an unexpected resemblance to the spectrin family of protein structures. E2 can reversibly dimerise in solution, and the dimerisation occurs along the longest dimension of the molecule in an antiparallel orientation, which enables the N-terminal substructure of one monomer to pack against the C-terminal substructure of a second monomer. The high degree of conservation of residues at the putative dimer interface suggests that the E2 dimer observed in the crystal could be physiologically relevant. Heparin sulphate proteoglycans, the putative ligands for the precursor present in extracellular matrix, bind to E2 at a conserved and positively charged site near the dimer interface [].; PDB: 3K6B_A 3K66_A 1TKN_A 3NYL_A 3NYJ_A 3UMH_A 3UMK_A 3UMI_A 3QMK_B 3PMR_B ....
Probab=100.00 E-value=1.2e-78 Score=582.39 Aligned_cols=185 Identities=49% Similarity=0.762 Sum_probs=178.6
Q ss_pred CCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHH
Q psy5197 323 VPTPDPYFTHFEPKDEHHAFKEALQRLEEMHREKVTKVMKDWSDLEERYQDMRSKSPGVAEDFKQKMTLRFQQTVQSLEE 402 (564)
Q Consensus 323 ~pt~D~Yfe~~~~~~EH~~F~~Ak~~LE~rhr~rm~~VmKEW~eAe~q~knL~~adPkaae~~rq~l~qhFQ~~V~sLEe 402 (564)
++++|+||++|+++|||++|++||++||++||+||++|||||+|||+||++||++|||+|+.||++||+|||++|+|||+
T Consensus 9 ~~~~D~Y~~~~~~~~Eh~~f~~Ak~rLe~~hr~r~~~VmkeW~eaE~~~~~l~~~DPk~Ae~~k~~m~~rFQ~~v~aLE~ 88 (193)
T PF12925_consen 9 SDAVDPYFEHPDPENEHQRFKEAKERLEEKHRERMTKVMKEWSEAEERYKELPKADPKKAEQFKKEMTQRFQKTVQALEQ 88 (193)
T ss_dssp --HHHHHHHSSTTSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCChHhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHccCCCChhHHHHHHHHHHHHHhhhhhhHHHHHHHHhhcChhHHh
Q psy5197 403 EGNAEKHQLIVMHQQRVAARINQHKKDAMNCYIEALNDVSLNTHKVQKCLQKLLRALHKDRHHTIAHYKHLLATNLDFAV 482 (564)
Q Consensus 403 E~a~ErqqLvetH~aRVeA~LNdrRR~Ale~Yl~ALq~~pP~phrVl~aLkrYvRAe~KDR~HTirHYqHv~avdPekAa 482 (564)
|+++||||||+||++||+|+||+|||.||+||++||+++||++|+||+||++||||++|||+|||+||+||++|||++|+
T Consensus 89 e~~~er~qL~~~H~qRV~a~Lnerkr~al~~y~~al~~~ppn~~~vl~~Lk~yiRa~~KDR~Htl~h~~H~~~~dp~~A~ 168 (193)
T PF12925_consen 89 EAAAERQQLVETHQQRVQAMLNERKRAALENYTAALQADPPNPHKVLKALKKYIRAEEKDRQHTLRHFEHLRMVDPEEAA 168 (193)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcchhHHHHHHHHHHHhhhhhhhhh
Q psy5197 483 KEKPMTLEHLVDIDHTINQSMTMLQ 507 (564)
Q Consensus 483 qmk~qvltHL~vIeeRmNQSLsLLy 507 (564)
+||++||+||++||+||||||+|||
T Consensus 169 ~~k~~vl~hL~~Id~r~NqSL~lL~ 193 (193)
T PF12925_consen 169 QIKPQVLTHLRVIDERMNQSLSLLY 193 (193)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HhHHHHHHHHHHHHHHHHHHHHhhC
Confidence 9999999999999999999999997
No 3
>smart00006 A4_EXTRA amyloid A4. amyloid A4 precursor of Alzheimers disease
Probab=100.00 E-value=2.7e-64 Score=470.52 Aligned_cols=112 Identities=54% Similarity=1.081 Sum_probs=110.9
Q ss_pred CCCCCccccccccCcccccccccccCCCCCC-CCceeeeeeccCCCcCCCccccCCccccccccCcccccchhhhHHhHH
Q psy5197 1 IYPKHDITNIVESSNYVKITNWCKVGHSKCK-HTDWVKPYRCLEGPFQSDALLVPEHCVFDHIHNQSKCWEYERWNQTAA 79 (564)
Q Consensus 1 vYP~lqITNVVEa~q~V~I~nWCk~g~~~Ck-h~h~V~PyRCLvGeFvSDaLLVPe~CkF~H~e~md~C~~~~~Wh~vAk 79 (564)
|||+|||||||||||||+|+||||+|+++|+ |+|||+|||||||+|+|||||||++|+|+|+|||++|++|++||++|+
T Consensus 53 vYP~l~ItNVvea~~~v~i~~WC~~~~~~C~~~~h~V~PyrCLvG~F~SdALlVP~~C~F~H~~~~~~C~~~~~W~~~A~ 132 (165)
T smart00006 53 AYPELQITNVVEASQPVSISDWCRRGRSQCKWTHHSVIPFRCLVGEFVSDALLVPEGCQFLHQERMDQCEDHQRWHQEAK 132 (165)
T ss_pred HCCccccceeeecCCceEhhhhhccCCccccCCCCeEeeeEeeCCccccceEEcCCCceeecccccccccChHHHHHHHH
Confidence 7999999999999999999999999999999 679999999999999999999999999999999999999999999999
Q ss_pred hhcccccccccceecccccccCccceeeeeccC
Q psy5197 80 QSCLERDLSLRSFAMLLPCGISLFAGVEFVCCP 112 (564)
Q Consensus 80 eaC~~~~m~LhsygMLLPCGid~F~GVEfVCCP 112 (564)
++|+++||+|||||||||||+|+|+||||||||
T Consensus 133 e~C~~~~m~l~sy~mLlPCg~d~F~GvEfVCCP 165 (165)
T smart00006 133 EACSTKGMILRSFGMLLPCGIDMFRGVEFVCCP 165 (165)
T ss_pred HHHhhcCceeEeeecccccccccccceeEEeCC
Confidence 999999999999999999999999999999999
No 4
>PF12924 APP_Cu_bd: Copper-binding of amyloid precursor, CuBD; InterPro: IPR011178 Amyloid-beta precursor protein (APP, or A4) is associated with Alzheimer's disease (AD), because one of its breakdown products, amyloid-beta (A-beta), aggregates to form amyloid or senile plaques [, ]. Mutations in APP or in proteins that process APP have been linked with early-onset, familial AD. Individuals with Down's syndrome carry an extra copy of chromosome 21, which contains the APP gene, and almost invariably develop amyloid plaques and Alzheimer's symptoms. APP is important for the neurogenesis and neuronal regeneration, either through the intact protein, or through its many breakdown products []. APP consists of a large N-terminal extracellular region containing heparin-binding and copper-binding sites, a short hydrophobic transmembrane domain, and a short C-terminal intracellular domain. The N-terminal region is similar in structure to cysteine-rich growth factors and appears to function as a cell surface receptor, contributing to neurite growth, neuronal adhesion, axonogenesis and cell mobility []. APP acts as a kinesin I membrane receptor to mediate the axonal transport of beta-secretase and presenilin 1. The N-terminal domain can regulate neurite outgrowth through its binding to heparin and collagen I and IV, which are components of the extracellular matrix. APP is also coupled to apoptosis-inducing pathways, and is involved in copper homeostasis/oxidative stress through copper ion reduction, where copper-metallated APP induces neuronal death []. The C-terminal intracellular domain appears to be involved in transcription regulation through protein-protein interactions. APP can promote transcription activation through binding to APBB1/Tip60, and may bind to the adaptor protein FE65 to transactivate a wide variety of different promoters. APP can be processed by different sets of enzymes: In the non-amyloidogenic (non-plaque-forming) pathway, APP is cleaved by alpha-secretase to yield a soluble N-terminal sAPP-alpha (neuroprotective) and a membrane-bound CTF-alpha. CTF-alpha is broken-down by presenilin-containing gamma-secretase to yield soluble p3 and membrane-bound AICD (nuclear signalling). In the amyloidogenic pathway (plaque-forming), APP is broken down by beta-secretase to yield soluble sAPP-beta and membrane-bound CTF-beta. CTF-beta is broken down by gamma-secretase to yield soluble amyloid-beta and membrane-bound AICD. Amyloid-beta is required for neuronal function, but can aggregate to form amyloid plaques that seem to disrupt brain cells by clogging points of cell-cell contact. This entry represents a copper-binding domain found within the extracellular domain, which is at the N-terminal of amyloidogenic glycoproteins such as amyloid-beta precursor protein (APP, or A4). The copper-binding domain has a dodecin-like fold consisting of a 2-layer alpha/beta topology []. More information about these protein can be found at Protein of the Month: Amyloid-beta Precursor Protein [].; GO: 0005488 binding, 0016021 integral to membrane; PDB: 3KTM_E 2FK3_D 2FK1_A 2FMA_A 2FJZ_A 2FKL_A 1OWT_A 2FK2_A.
Probab=100.00 E-value=1.2e-35 Score=237.19 Aligned_cols=58 Identities=47% Similarity=1.030 Sum_probs=55.6
Q ss_pred ccccccccCcccccchhhhHHhHHhhcccccccccceecccccccCccceeeeeccCC
Q psy5197 56 HCVFDHIHNQSKCWEYERWNQTAAQSCLERDLSLRSFAMLLPCGISLFAGVEFVCCPM 113 (564)
Q Consensus 56 ~CkF~H~e~md~C~~~~~Wh~vAkeaC~~~~m~LhsygMLLPCGid~F~GVEfVCCP~ 113 (564)
+|+|+|+|+|++||+|+|||+||+++|++++|+|||||||||||||+|+||||||||+
T Consensus 1 ~C~F~H~~~~~~C~~~~~W~~vA~e~C~~~~m~l~s~~mLlPCg~D~F~GvEfVCCP~ 58 (58)
T PF12924_consen 1 KCKFDHKERMDVCESHQHWHTVAKEACSAKGMVLHSFGMLLPCGIDRFRGVEFVCCPP 58 (58)
T ss_dssp TEEEEEEE-TTEEEEHHHHHHHHHHHHHHTTEEEEEEEEEEEEETTEEEEEEEEEEE-
T ss_pred CCeeeeecCcccccChhHHHHHHHHHHhhcCceeeccccccccccccccceeEecCCC
Confidence 6999999999999999999999999999999999999999999999999999999995
No 5
>PF02177 APP_N: Amyloid A4 N-terminal heparin-binding; InterPro: IPR015849 Amyloid-beta precursor protein (APP, or A4) is associated with Alzheimer's disease (AD), because one of its breakdown products, amyloid-beta (A-beta), aggregates to form amyloid or senile plaques [, ]. Mutations in APP or in proteins that process APP have been linked with early-onset, familial AD. Individuals with Down's syndrome carry an extra copy of chromosome 21, which contains the APP gene, and almost invariably develop amyloid plaques and Alzheimer's symptoms. APP is important for the neurogenesis and neuronal regeneration, either through the intact protein, or through its many breakdown products []. APP consists of a large N-terminal extracellular region containing heparin-binding and copper-binding sites, a short hydrophobic transmembrane domain, and a short C-terminal intracellular domain. The N-terminal region is similar in structure to cysteine-rich growth factors and appears to function as a cell surface receptor, contributing to neurite growth, neuronal adhesion, axonogenesis and cell mobility []. APP acts as a kinesin I membrane receptor to mediate the axonal transport of beta-secretase and presenilin 1. The N-terminal domain can regulate neurite outgrowth through its binding to heparin and collagen I and IV, which are components of the extracellular matrix. APP is also coupled to apoptosis-inducing pathways, and is involved in copper homeostasis/oxidative stress through copper ion reduction, where copper-metallated APP induces neuronal death []. The C-terminal intracellular domain appears to be involved in transcription regulation through protein-protein interactions. APP can promote transcription activation through binding to APBB1/Tip60, and may bind to the adaptor protein FE65 to transactivate a wide variety of different promoters. APP can be processed by different sets of enzymes: In the non-amyloidogenic (non-plaque-forming) pathway, APP is cleaved by alpha-secretase to yield a soluble N-terminal sAPP-alpha (neuroprotective) and a membrane-bound CTF-alpha. CTF-alpha is broken-down by presenilin-containing gamma-secretase to yield soluble p3 and membrane-bound AICD (nuclear signalling). In the amyloidogenic pathway (plaque-forming), APP is broken down by beta-secretase to yield soluble sAPP-beta and membrane-bound CTF-beta. CTF-beta is broken down by gamma-secretase to yield soluble amyloid-beta and membrane-bound AICD. Amyloid-beta is required for neuronal function, but can aggregate to form amyloid plaques that seem to disrupt brain cells by clogging points of cell-cell contact. This entry represents a heparin-binding domain found at the N-terminal of the extracellular domain, which is itself found at the N-terminal of amyloidogenic glycoproteins such as amyloid-beta precursor protein (APP, or A4). The core of the heparin-binding domain has an unusual disulphide-rich fold, consisting of a beta-x-alpha-beta-loop-beta topology []. More information about these protein can be found at Protein of the Month: Amyloid-beta Precursor Protein [].; GO: 0005488 binding, 0016021 integral to membrane; PDB: 3KTM_E 1MWP_A 2FKL_A 1OWT_A.
Probab=99.96 E-value=7.5e-31 Score=230.69 Aligned_cols=55 Identities=62% Similarity=1.155 Sum_probs=40.3
Q ss_pred CCCCCccccccccCcccccccccccCCCCCC-CCceeeeeeccCCCcCCCccccCC
Q psy5197 1 IYPKHDITNIVESSNYVKITNWCKVGHSKCK-HTDWVKPYRCLEGPFQSDALLVPE 55 (564)
Q Consensus 1 vYP~lqITNVVEa~q~V~I~nWCk~g~~~Ck-h~h~V~PyRCLvGeFvSDaLLVPe 55 (564)
|||+|||||||||||||+|+||||+|+++|| |+|||+|||||||||+||||||||
T Consensus 47 vYP~l~ItnVvea~~~v~i~~WC~~~~~~Ck~~~h~V~PyrCL~GeF~SdALlVPe 102 (102)
T PF02177_consen 47 VYPELQITNVVEASQPVTISNWCKKGRKPCKGHSHIVRPYRCLVGEFVSDALLVPE 102 (102)
T ss_dssp HSTTS-EEEEEE-SS-EEE--EEETTSSEEE---EEE--EEEEESS-----EEEET
T ss_pred hCCCCceeEEEECCcceeccccccCCCcccCCCCeEEEeeeccCCCcccceeecCC
Confidence 7999999999999999999999999999999 799999999999999999999997
No 6
>PF10515 APP_amyloid: beta-amyloid precursor protein C-terminus; InterPro: IPR019543 This is the amyloid, C-terminal, protein of the beta-Amyloid precursor protein (APP) which is a conserved and ubiquitous transmembrane glycoprotein strongly implicated in the pathogenesis of Alzheimer's disease but whose normal biological function is unknown. The C-terminal 100 residues are released and aggregate into amyloid deposits which are strongly implicated in the pathology of Alzheimer's disease plaque-formation. The domain is associated with IPR008154 from INTERPRO, further towards the N terminus. ; PDB: 2ROZ_A 3DXD_D 1X11_D 2LP1_A 2LOH_A 3MXC_L 3MXY_L 3DXC_B 3DXE_D 3L81_B ....
Probab=99.59 E-value=2.8e-16 Score=123.46 Aligned_cols=52 Identities=60% Similarity=1.087 Sum_probs=31.4
Q ss_pred HHHHHHHHhhhhccCCCCCcccccccccccccccCCCChhhhhhhhccccCCCCCCccccc
Q psy5197 225 AVFIAMTVLKRRSARSPQNLCNVFFYFQGFIEVDQAATPEERHVANMQINGYENPTYKYFE 285 (564)
Q Consensus 225 ~~~~~~~~~~r~~~~~p~~~~~~~~y~~G~~~~dq~~t~ee~~~~n~~~n~~Enp~Y~yfe 285 (564)
++++|+++++ |..+.|.+ +|||+||+..||||||++|||+||||||||||||
T Consensus 1 ~ivva~~~~r-rr~r~~~~--------~g~veVD~~~tpEe~h~~~mQ~nGYENPTYkyfE 52 (52)
T PF10515_consen 1 IIVVALALLR-RRSRGPIS--------HGFVEVDPCLTPEERHLSNMQNNGYENPTYKYFE 52 (52)
T ss_dssp HHHHHHHHHH-HS-------------------------HHHHHHHHHHCTEEESCTCHHCC
T ss_pred CEEEEEEEEe-cccCCccc--------cceEEecCCCChHHHHHHHHHhcCCcCCceeccC
Confidence 3678898888 45677764 9999999999999999999999999999999996
No 7
>KOG3540|consensus
Probab=98.36 E-value=2e-07 Score=100.82 Aligned_cols=33 Identities=73% Similarity=1.243 Sum_probs=31.8
Q ss_pred ccccccCCCChhhhhhhhccccCCCCCCcccccc
Q psy5197 253 GFIEVDQAATPEERHVANMQINGYENPTYKYFEI 286 (564)
Q Consensus 253 G~~~~dq~~t~ee~~~~n~~~n~~Enp~Y~yfe~ 286 (564)
|+|||| ..||||||++-||.||||||||+||+-
T Consensus 581 GvvEVD-~~TpEErhl~~mQ~~GYENPTYkf~eq 613 (615)
T KOG3540|consen 581 GVVEVD-MLTPEERHLAKMQVNGYENPTYKFFEQ 613 (615)
T ss_pred eeEEEe-ecCHHHHHHHHHHhcCCCCchhhhhhc
Confidence 899999 999999999999999999999999974
No 8
>PF14643 DUF4455: Domain of unknown function (DUF4455)
Probab=92.80 E-value=19 Score=39.98 Aligned_cols=213 Identities=16% Similarity=0.128 Sum_probs=149.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhchHHHH-HHHhhcccCC----CCchHHHHHHHHH---HHHHHHHHHHHhhhhHH
Q psy5197 337 DEHHAFKEALQRLEEMHREKVTKVMKDWSDLE-ERYQDMRSKS----PGVAEDFKQKMTL---RFQQTVQSLEEEGNAEK 408 (564)
Q Consensus 337 ~EH~~F~~Ak~~LE~rhr~rm~~VmKEW~eAe-~q~knL~~ad----Pkaae~~rq~l~q---hFQ~~V~sLEeE~a~Er 408 (564)
+.-..|..+-+.+|..+.+++..|.+.-.+.= .-+=-||..= ++.+..+.+.|.. -+..++..|.+..-..-
T Consensus 86 ~~I~~l~~~L~~~E~~R~~~l~~~l~~~~~~L~~ia~~~~~dv~rli~~ea~~iN~~ll~Nrra~a~L~~~L~~~~~~~e 165 (473)
T PF14643_consen 86 QWIKELDEDLEELEKERADKLKKVLRKYVEILEKIAHLLPPDVERLIEKEAMEINQALLGNRRAYADLFANLMEAELQRE 165 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 36678999999999999999999998866543 3333331100 1222333333332 23445555555444444
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHcc----CCCChhHHHHHHHHHHHHHhhhhhhHHHHHHHHhh--cChhHHh
Q psy5197 409 HQLIVMHQQRVAARINQHKKDAMNCYIEALND----VSLNTHKVQKCLQKLLRALHKDRHHTIAHYKHLLA--TNLDFAV 482 (564)
Q Consensus 409 qqLvetH~aRVeA~LNdrRR~Ale~Yl~ALq~----~pP~phrVl~aLkrYvRAe~KDR~HTirHYqHv~a--vdPekAa 482 (564)
.....+=+.|+..+-.-|+..|+..|..-+++ +||....++..|++-....+..|+-.|..+.+++- ....+..
T Consensus 166 ~~~~~~w~~~~~~Wr~l~~~~~i~~f~~~~~s~~~~~P~~~~~~~e~~~~~Q~~l~~~r~~~L~~l~~l~Pp~~t~~~v~ 245 (473)
T PF14643_consen 166 LSYRRRWQDRVDDWRALRHERAIQEFREFMASEEFQNPPERKQLLEQMRKEQVDLHEKRLELLQSLCDLLPPNLTKEKVE 245 (473)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCccccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHH
Confidence 46666778889999999999999999999987 48888888888888888888889888888888774 3344556
Q ss_pred hcchhHHHHHHHHHHHhhhhhhhhhhchhhHHHhHHHHHHHHHHhhccCCCCcccccCCHHHHHHHHHHHHHH
Q psy5197 483 KEKPMTLEHLVDIDHTINQSMTMLQRHPALAVKISELMQDYMQALRSKDETPGSLLSLTREAEEAILDKYKAQ 555 (564)
Q Consensus 483 qmk~qvltHL~vIeeRmNQSLsLLyr~P~la~eI~~~idellq~~Rs~~d~p~~l~s~t~~~e~~~ld~~~~~ 555 (564)
+-...+-.=...|+..+++-+.-|+ .+..++..+-..+++.+|......+. +|+|..+.+++..--.
T Consensus 246 eW~~~l~~l~~~~d~~~~~~~~~lr---~~~E~~~~ec~~~ve~~k~~L~~~~~---~~~eea~~lv~~~~~p 312 (473)
T PF14643_consen 246 EWYASLNALNEQIDEYHQQCMEKLR---ALYEKICQECLALVEKLKQELLDWKA---CTEEEAEELVNPEFLP 312 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhcC---CChHHHHHHHHHHHHH
Confidence 6666666667778888877777554 57888888888888888877666665 6777777776655433
No 9
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=82.99 E-value=35 Score=37.99 Aligned_cols=124 Identities=14% Similarity=0.210 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q psy5197 340 HAFKEALQRLEEMHREKVTKVMKDWSDLEERYQDMRSKSPGVAEDFKQKMTLRFQQTVQSLEEEGNAEKHQLIVMHQQRV 419 (564)
Q Consensus 340 ~~F~~Ak~~LE~rhr~rm~~VmKEW~eAe~q~knL~~adPkaae~~rq~l~qhFQ~~V~sLEeE~a~ErqqLvetH~aRV 419 (564)
.+-...+..+++. ..+++..-++-+.++.+.+++.+ .-.+....++ .++..++.+++..+.-..+|..---++
T Consensus 38 ~~l~q~q~ei~~~-~~~i~~~~~~~~kL~~~lk~~e~----~i~~~~~ql~-~s~~~l~~~~~~I~~~~~~l~~l~~q~- 110 (420)
T COG4942 38 KQLKQIQKEIAAL-EKKIREQQDQRAKLEKQLKSLET----EIASLEAQLI-ETADDLKKLRKQIADLNARLNALEVQE- 110 (420)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH-HHHhHHHHHHhhHHHHHHHHHHHHHHH-
Confidence 3444455555333 33456666666666666666622 2223333333 366666666666665555554444444
Q ss_pred HHHhhhhhHHHHHHHHHHHcc---CCCC-----hhHHH--HHHHHHHHHHhhhhhhHHHHHHHHhh
Q psy5197 420 AARINQHKKDAMNCYIEALND---VSLN-----THKVQ--KCLQKLLRALHKDRHHTIAHYKHLLA 475 (564)
Q Consensus 420 eA~LNdrRR~Ale~Yl~ALq~---~pP~-----phrVl--~aLkrYvRAe~KDR~HTirHYqHv~a 475 (564)
..||.-|.-+|+|++. +||- |+.++ ..|.-|.++.++.|+-.|.++.-.+.
T Consensus 111 -----r~qr~~La~~L~A~~r~g~~p~~~ll~~~eda~~~~R~ai~~~~l~~~~~~~i~~l~~~~~ 171 (420)
T COG4942 111 -----REQRRRLAEQLAALQRSGRNPPPALLVSPEDAQRSVRLAIYYGALNPARAERIDALKATLK 171 (420)
T ss_pred -----HHHHHHHHHHHHHHHhccCCCCchhhcChhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3456778899999996 3543 56666 67889999999999999999987654
No 10
>KOG1029|consensus
Probab=82.96 E-value=68 Score=38.62 Aligned_cols=33 Identities=18% Similarity=0.222 Sum_probs=25.5
Q ss_pred HHHhhhh---HHHHHHHHHHHHHHHHhhhhhHHHHH
Q psy5197 400 LEEEGNA---EKHQLIVMHQQRVAARINQHKKDAMN 432 (564)
Q Consensus 400 LEeE~a~---ErqqLvetH~aRVeA~LNdrRR~Ale 432 (564)
++.|+|. |||+-++.-.+|+.-|||++-|.-=.
T Consensus 396 e~rEaar~ElEkqRqlewErar~qem~~Qk~reqe~ 431 (1118)
T KOG1029|consen 396 ERREAAREELEKQRQLEWERARRQEMLNQKNREQEW 431 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 3445544 89999999999999999998775433
No 11
>PF14643 DUF4455: Domain of unknown function (DUF4455)
Probab=80.09 E-value=76 Score=35.29 Aligned_cols=85 Identities=18% Similarity=0.281 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHhhhhchHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhhh
Q psy5197 348 RLEEMHREKVTKVMKDWSDLEERYQDMRSKSPGVAEDFKQKMTLRFQQTVQSLEEEGNAEKHQLIVMHQQRVAARINQHK 427 (564)
Q Consensus 348 ~LE~rhr~rm~~VmKEW~eAe~q~knL~~adPkaae~~rq~l~qhFQ~~V~sLEeE~a~ErqqLvetH~aRVeA~LNdrR 427 (564)
+|.+..-++--.....|.+...+.+.++ ++.+++.|...+.|.+-..=.+|+++.+.....-..+.. +
T Consensus 156 ~L~~~~~~~e~~~~~~w~~~~~~Wr~l~----------~~~~i~~f~~~~~s~~~~~P~~~~~~~e~~~~~Q~~l~~--~ 223 (473)
T PF14643_consen 156 NLMEAELQRELSYRRRWQDRVDDWRALR----------HERAIQEFREFMASEEFQNPPERKQLLEQMRKEQVDLHE--K 223 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh----------HHHHHHHHHHHhCccccCCChHHHHHHHHHHHHHHHHHH--H
Confidence 3333333333344556888888888882 557999999999998888889999999998887665553 4
Q ss_pred HHHHHHHHHHHc-cCCCChhH
Q psy5197 428 KDAMNCYIEALN-DVSLNTHK 447 (564)
Q Consensus 428 R~Ale~Yl~ALq-~~pP~phr 447 (564)
|.++ |..|. ..||+..+
T Consensus 224 r~~~---L~~l~~l~Pp~~t~ 241 (473)
T PF14643_consen 224 RLEL---LQSLCDLLPPNLTK 241 (473)
T ss_pred HHHH---HHHhhcCCCCCCCH
Confidence 4444 45555 35777533
No 12
>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=79.63 E-value=30 Score=41.21 Aligned_cols=115 Identities=21% Similarity=0.210 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHccCCCChhHHHHHHHHHHHH---Hhhhhhh-HHHHHHHHhhcChh-HHhhcch
Q psy5197 412 IVMHQQRVAARINQHKKDAMNCYIEALNDVSLNTHKVQKCLQKLLRA---LHKDRHH-TIAHYKHLLATNLD-FAVKEKP 486 (564)
Q Consensus 412 vetH~aRVeA~LNdrRR~Ale~Yl~ALq~~pP~phrVl~aLkrYvRA---e~KDR~H-TirHYqHv~avdPe-kAaqmk~ 486 (564)
++.|+.|..--|--+=+.+.+.+.+++-..--. |..+-.|++. .++|++- -++.|+-++.++.. .-.|+-+
T Consensus 788 ~na~Lrrl~~~Iig~m~~~k~~~~a~~~e~~ae----l~~ipey~~rL~~L~~D~Lpef~arF~~llN~~S~~~v~q~~~ 863 (1104)
T COG4913 788 VNARLRRLREEIIGRMSDAKKEDTAALSEVGAE----LDDIPEYLARLQTLTEDALPEFLARFQELLNRSSDDGVTQLLS 863 (1104)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcchhhhhhhccC----HhHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcccchHHHHHH
Confidence 455666655555444455555555555433222 3344444443 3577763 46789999987654 4556666
Q ss_pred hHHHHHHHHHHH---hhhhhhhhhhch------hhHH--HhHHHHHHHHHHhhcc
Q psy5197 487 MTLEHLVDIDHT---INQSMTMLQRHP------ALAV--KISELMQDYMQALRSK 530 (564)
Q Consensus 487 qvltHL~vIeeR---mNQSLsLLyr~P------~la~--eI~~~idellq~~Rs~ 530 (564)
++=.--..|||| ||+||.-..-+- ++++ -..+.|.+|.|++|.-
T Consensus 864 ~L~~er~~IeERIe~IN~SL~~vdfn~gRylhIdi~kQp~p~~~~R~fqq~lra~ 918 (1104)
T COG4913 864 HLDHERALIEERIEAINDSLRRVDFNSGRYLHIDIAKQPVPHDSMRTFQQALRAL 918 (1104)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccCCceEEeecccCCCccHHHHHHHHHHHHh
Confidence 655555789999 599997543221 2222 1234888999999854
No 13
>KOG1853|consensus
Probab=77.80 E-value=76 Score=33.68 Aligned_cols=121 Identities=23% Similarity=0.376 Sum_probs=69.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhc-hHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q psy5197 339 HHAFKEALQRLEEMHREKVTKVMKD-WSDLEERYQDMRSKSPGVAEDFKQKMTLRFQQTVQSLEEEGNAEKHQLIVMHQQ 417 (564)
Q Consensus 339 H~~F~~Ak~~LE~rhr~rm~~VmKE-W~eAe~q~knL~~adPkaae~~rq~l~qhFQ~~V~sLEeE~a~ErqqLvetH~a 417 (564)
..+|+.+++.|-+-+--- +| =+++|.|...+.... |. +-.+-|.+ +.|++...|||.---..-.
T Consensus 26 kq~f~~~reEl~EFQegS-----rE~EaelesqL~q~etrn-------rd-l~t~nqrl--~~E~e~~Kek~e~q~~q~y 90 (333)
T KOG1853|consen 26 KQHFLQMREELNEFQEGS-----REIEAELESQLDQLETRN-------RD-LETRNQRL--TTEQERNKEKQEDQRVQFY 90 (333)
T ss_pred HHHHHHHHHHHHHHhhhh-----HHHHHHHHHHHHHHHHHH-------HH-HHHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 467888888776544221 11 123444554442221 11 11122222 5678888888764333333
Q ss_pred HHHHHhhhhhHHHHHHHHHHHccCCCChhHHHHHHHHHHHHHhhhhhhHHHHHHHHhhcChhHHhhcchhHHHHHHHHHH
Q psy5197 418 RVAARINQHKKDAMNCYIEALNDVSLNTHKVQKCLQKLLRALHKDRHHTIAHYKHLLATNLDFAVKEKPMTLEHLVDIDH 497 (564)
Q Consensus 418 RVeA~LNdrRR~Ale~Yl~ALq~~pP~phrVl~aLkrYvRAe~KDR~HTirHYqHv~avdPekAaqmk~qvltHL~vIee 497 (564)
+++. +|..+-.+.|.|-.-|++|||...- ..-|.|.| |..++--|-+.+.
T Consensus 91 ~q~s---------------~Leddlsqt~aikeql~kyiReLEQ------------aNDdLEra---kRati~sleDfeq 140 (333)
T KOG1853|consen 91 QQES---------------QLEDDLSQTHAIKEQLRKYIRELEQ------------ANDDLERA---KRATIYSLEDFEQ 140 (333)
T ss_pred HHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHH------------hccHHHHh---hhhhhhhHHHHHH
Confidence 4433 3444555789999999999998642 22344444 3455666889999
Q ss_pred Hhhhhhh
Q psy5197 498 TINQSMT 504 (564)
Q Consensus 498 RmNQSLs 504 (564)
|+||++.
T Consensus 141 rLnqAIE 147 (333)
T KOG1853|consen 141 RLNQAIE 147 (333)
T ss_pred HHHHHHH
Confidence 9999984
No 14
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=77.25 E-value=51 Score=30.37 Aligned_cols=77 Identities=23% Similarity=0.263 Sum_probs=47.9
Q ss_pred chhhHHHHHHHHHHHHHHHHH---HHhhhhchHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q psy5197 336 KDEHHAFKEALQRLEEMHREK---VTKVMKDWSDLEERYQDMRSKSPGVAEDFKQKMTLRFQQTVQSLEEEGNAEKHQLI 412 (564)
Q Consensus 336 ~~EH~~F~~Ak~~LE~rhr~r---m~~VmKEW~eAe~q~knL~~adPkaae~~rq~l~qhFQ~~V~sLEeE~a~ErqqLv 412 (564)
-.+|..++.+...|+...... +....++|.....+++... +...+..++...+.||...+.|.+....-.++|.
T Consensus 28 ~~~~~~~k~~~~~l~~~~~~~~~~l~~~~~el~~~~~~l~~~~---~~ls~~~~~~~~~~l~~~~~~l~~~~~~~~~~l~ 104 (158)
T PF03938_consen 28 FQESPAGKDAQAKLQEKFKALQKELQAKQKELQKLQQKLQSQK---ATLSEEERQKRQQELQQKEQELQQFQQQAQQQLQ 104 (158)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-------SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357888999988887766544 4444555555555555442 2222344778888888888888877666666544
Q ss_pred HHH
Q psy5197 413 VMH 415 (564)
Q Consensus 413 etH 415 (564)
..-
T Consensus 105 ~~~ 107 (158)
T PF03938_consen 105 QEE 107 (158)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 15
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=76.33 E-value=48 Score=30.35 Aligned_cols=92 Identities=11% Similarity=-0.042 Sum_probs=58.6
Q ss_pred HHHHhhhh-hHHHHHHHHHHHccCCCChhHHHHHHHHHHHHHhhhhhhHHHHHHHHhhcChhHHh--hcchhHHHHHHHH
Q psy5197 419 VAARINQH-KKDAMNCYIEALNDVSLNTHKVQKCLQKLLRALHKDRHHTIAHYKHLLATNLDFAV--KEKPMTLEHLVDI 495 (564)
Q Consensus 419 VeA~LNdr-RR~Ale~Yl~ALq~~pP~phrVl~aLkrYvRAe~KDR~HTirHYqHv~avdPekAa--qmk~qvltHL~vI 495 (564)
-.+++... -..|++.|..+|+.+|.++.-... .-.+.....+-.-.+..|+.++..+|.-+. .-.-.++..+..+
T Consensus 31 g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~--lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~ 108 (144)
T PRK15359 31 GYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIA--LAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEP 108 (144)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHH--HHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCH
Confidence 33333333 357999999999999887754322 233333445555689999999999997433 3344556666666
Q ss_pred HHHhhhhhhhhhhchhh
Q psy5197 496 DHTINQSMTMLQRHPAL 512 (564)
Q Consensus 496 eeRmNQSLsLLyr~P~l 512 (564)
++-+.---..|...|..
T Consensus 109 ~eAi~~~~~Al~~~p~~ 125 (144)
T PRK15359 109 GLAREAFQTAIKMSYAD 125 (144)
T ss_pred HHHHHHHHHHHHhCCCC
Confidence 66666555556556654
No 16
>PF11657 Activator-TraM: Transcriptional activator TraM
Probab=76.17 E-value=26 Score=33.75 Aligned_cols=91 Identities=15% Similarity=0.235 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhchHHHH-HHHhh-cccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q psy5197 341 AFKEALQRLEEMHREKVTKVMKDWSDLE-ERYQD-MRSKSPGVAEDFKQKMTLRFQQTVQSLEEEGNAEKHQLIVMHQQR 418 (564)
Q Consensus 341 ~F~~Ak~~LE~rhr~rm~~VmKEW~eAe-~q~kn-L~~adPkaae~~rq~l~qhFQ~~V~sLEeE~a~ErqqLvetH~aR 418 (564)
.+.+|++.+=...++.|+.+--.|.++- ..+.. |-.+--...+.+.|.|.+.+|++++++..+ +..-+++
T Consensus 39 ~~~~aq~~~l~~fk~elE~~~~~w~~dak~kAEkiL~aal~~ske~m~~~l~e~~~~~~~avk~~--------i~~~~~~ 110 (144)
T PF11657_consen 39 DSAKAQQEQLDQFKEELEEIASRWGEDAKEKAEKILNAALAASKEAMNKILQESAQEIVEAVKSE--------IDNSLAE 110 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
Confidence 3455555555778888888888897543 23311 111112234567777777777777777654 5666777
Q ss_pred HHHHhhhhhHHHHHHHHHHHc
Q psy5197 419 VAARINQHKKDAMNCYIEALN 439 (564)
Q Consensus 419 VeA~LNdrRR~Ale~Yl~ALq 439 (564)
+......-||.|+=|+++|+-
T Consensus 111 ~~~~~~~~r~~a~~nl~aa~~ 131 (144)
T PF11657_consen 111 VNDLVREARKAAILNLVAAVL 131 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 788888889999999999863
No 17
>PF13801 Metal_resist: Heavy-metal resistance; PDB: 3EPV_C 2Y3D_A 2Y3H_D 2Y3G_B 2Y3B_A 2Y39_A 3LAY_H.
Probab=70.22 E-value=50 Score=27.95 Aligned_cols=52 Identities=13% Similarity=0.141 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHccCCCChhHHHHHHHHHHHHHhhhhhhHHHHHHHHhh-cChh
Q psy5197 428 KDAMNCYIEALNDVSLNTHKVQKCLQKLLRALHKDRHHTIAHYKHLLA-TNLD 479 (564)
Q Consensus 428 R~Ale~Yl~ALq~~pP~phrVl~aLkrYvRAe~KDR~HTirHYqHv~a-vdPe 479 (564)
+.+...+.+.|.+++|++.+|..++++...+...=+.-.++|+--+.+ .+|+
T Consensus 69 ~~~r~~l~~ll~~~~~D~~~i~a~~~~~~~~~~~l~~~~~~~~~~~~~~Ltpe 121 (125)
T PF13801_consen 69 RAARQELRALLAAPPPDEAAIEALLEEIREAQAELRQERLEHLLEIRAVLTPE 121 (125)
T ss_dssp HHHHHHHHHHHCCSSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-GG
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH
Confidence 445556678899999999999999999999998888888888877766 4554
No 18
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=69.91 E-value=71 Score=27.43 Aligned_cols=45 Identities=11% Similarity=0.146 Sum_probs=33.4
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhh
Q psy5197 380 GVAEDFKQKMTLRFQQTVQSLEEEGNAEKHQLIVMHQQRVAARIN 424 (564)
Q Consensus 380 kaae~~rq~l~qhFQ~~V~sLEeE~a~ErqqLvetH~aRVeA~LN 424 (564)
+.++..++.+...|..+++.|++.-..--++|-..+..+...+--
T Consensus 35 ~~~~~~~~~I~~~f~~l~~~L~~~e~~ll~~l~~~~~~~~~~l~~ 79 (127)
T smart00502 35 ENAADVEAQIKAAFDELRNALNKRKKQLLEDLEEQKENKLKVLEQ 79 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666888999999999999988877777777766666555433
No 19
>PF11264 ThylakoidFormat: Thylakoid formation protein; InterPro: IPR017499 Psp29, originally designated sll1414 (P73956 from SWISSPROT) in Synechocystis sp. (strain PCC 6803), is found universally in Cyanobacteria and in Arabidopsis. It was isolated and partially sequenced from purified photosystem II (PS II) in Synechocystis. While its function is unknown, mutant studies show an impairment in photosystem II biogenesis and/or stability, rather than in PS II core function.; GO: 0010027 thylakoid membrane organization, 0015979 photosynthesis, 0009523 photosystem II
Probab=66.64 E-value=29 Score=35.35 Aligned_cols=121 Identities=16% Similarity=0.181 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHh-----------------------hhhhHHHHHHHHHHHccCCCChhHHHHHHHHHHHHHhhh-----
Q psy5197 411 LIVMHQQRVAARI-----------------------NQHKKDAMNCYIEALNDVSLNTHKVQKCLQKLLRALHKD----- 462 (564)
Q Consensus 411 LvetH~aRVeA~L-----------------------NdrRR~Ale~Yl~ALq~~pP~phrVl~aLkrYvRAe~KD----- 462 (564)
|||+|+-||.+-. .+.|-.-.+.|+.||..||=+-+..-+.|..+.+.....
T Consensus 29 LVe~HLl~~n~~F~yD~lfalG~vt~fd~fm~GY~p~~~~~~If~Alc~a~~~dp~~~r~dA~~l~~~a~~~s~~~l~~~ 108 (216)
T PF11264_consen 29 LVELHLLSVNKDFQYDPLFALGLVTVFDRFMQGYPPEEDKDSIFNALCQALGFDPEQYRQDAEKLEEWAKGKSIEDLLSW 108 (216)
T ss_pred HHHHHHHHhccCceeCchHHhhHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 8899998887543 234555667778888888777777766666664433222
Q ss_pred ----------------------------hhhHHHHHHHHhhcCh------hHHhhcchhHHHHHHHHHHHhhhhhhhhhh
Q psy5197 463 ----------------------------RHHTIAHYKHLLATNL------DFAVKEKPMTLEHLVDIDHTINQSMTMLQR 508 (564)
Q Consensus 463 ----------------------------R~HTirHYqHv~avdP------ekAaqmk~qvltHL~vIeeRmNQSLsLLyr 508 (564)
|.+.|==|.=+-.+++ ++-.++=.++-+-|..-.+|++.=|+|-..
T Consensus 109 l~~~~~~~~~~l~~~~~~ia~~~~f~YSRl~AIGL~~LLe~a~~~~~~~~~~~~~~l~~l~~~l~ls~~kv~kDL~lYrs 188 (216)
T PF11264_consen 109 LSQKGGEGDNPLAAILQAIASNPKFKYSRLFAIGLFRLLELAGADLVKDEEKRPEALEKLSEALGLSKEKVEKDLDLYRS 188 (216)
T ss_pred HhccccccchHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCcccccChhhHHHHHHHHHHHcCCCHHHHHhhHHHHHh
Confidence 3344444444444444 333344444555667778888888888887
Q ss_pred chhhHHHhHHHHHHHHHHhhccC
Q psy5197 509 HPALAVKISELMQDYMQALRSKD 531 (564)
Q Consensus 509 ~P~la~eI~~~idellq~~Rs~~ 531 (564)
+=+=..+....|+|+++++|-+.
T Consensus 189 nLeKm~qA~el~ee~~~~ErkKr 211 (216)
T PF11264_consen 189 NLEKMAQAKELMEEILEAERKKR 211 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777788889999999888654
No 20
>PF12998 ING: Inhibitor of growth proteins N-terminal histone-binding; InterPro: IPR024610 Histones undergo numerous post-translational modifications, including acetylation and methylation, at residues which are then probable docking sites for various chromatin remodelling complexes. Inhibitor of growth proteins (INGs) specifically bind to residues that have been thus modified. INGs carry a well-characterised C-terminal PHD-type zinc-finger domain, binding with lysine 4-tri-methylated histone H3 (H3K4me3), as well as this N-terminal domain that binds unmodified H3 tails. Although these two regions can bind histones independently, together they increase the apparent association of the ING for the H3 tail. This entry represents the N-terminal histone binding domain found in inhibitor proteins.; PDB: 4AFL_A.
Probab=66.23 E-value=40 Score=28.93 Aligned_cols=99 Identities=12% Similarity=0.205 Sum_probs=69.8
Q ss_pred HHHHHHHHHccCCCChhHHHHHHHHHHHH---HhhhhhhHHHHHHHHhhcChhHHhhcchhHHHHHHHHHHHhhhhhhhh
Q psy5197 430 AMNCYIEALNDVSLNTHKVQKCLQKLLRA---LHKDRHHTIAHYKHLLATNLDFAVKEKPMTLEHLVDIDHTINQSMTML 506 (564)
Q Consensus 430 Ale~Yl~ALq~~pP~phrVl~aLkrYvRA---e~KDR~HTirHYqHv~avdPekAaqmk~qvltHL~vIeeRmNQSLsLL 506 (564)
.|+.|+..|..-|+-..|.|..+|.+=.. ..+.....++.| +...... .--.......+..|..-+...+.+.
T Consensus 2 ~le~f~d~~~~LP~el~r~l~~irelD~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~I~~~~~~~~~l~ 77 (105)
T PF12998_consen 2 YLEDFLDSLENLPAELQRNLTLIRELDAKSQDLLEELDQQIQKF---IKNHGSP-SLSPEKRRELLKEIQEEYERALELS 77 (105)
T ss_dssp HHHHHHTSGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HTCTTS---S-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHChHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---Hhhcccc-cCChHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999876322 222333333333 3222221 0001145567788999999999999
Q ss_pred hhchhhHHHhHHHHHHHHHHhhccCC
Q psy5197 507 QRHPALAVKISELMQDYMQALRSKDE 532 (564)
Q Consensus 507 yr~P~la~eI~~~idellq~~Rs~~d 532 (564)
..==.|+..+.+.|+..++.+.++..
T Consensus 78 deKv~lA~~~~d~v~~hi~rLD~dl~ 103 (105)
T PF12998_consen 78 DEKVALAQQAYDLVDRHIRRLDQDLK 103 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998877654
No 21
>COG2733 Predicted membrane protein [Function unknown]
Probab=64.77 E-value=2.4e+02 Score=31.62 Aligned_cols=110 Identities=14% Similarity=0.098 Sum_probs=73.1
Q ss_pred HHHHHHHHhhhhhhHHHH--------HHHHhhcChh---HHhhcchhHHHHH---HHHHHHhhhh-hhhh--hhch--hh
Q psy5197 452 LQKLLRALHKDRHHTIAH--------YKHLLATNLD---FAVKEKPMTLEHL---VDIDHTINQS-MTML--QRHP--AL 512 (564)
Q Consensus 452 LkrYvRAe~KDR~HTirH--------YqHv~avdPe---kAaqmk~qvltHL---~vIeeRmNQS-LsLL--yr~P--~l 512 (564)
...++-.--+|+-|-+|| |-|=|..||. +|+.||++++..= ..+...-++| ..+. |+-| -|
T Consensus 238 ~~~~~D~v~~~p~h~~rk~~~R~~~~~i~~L~~Dp~~~~r~e~iK~~~~~~~~i~~~~~~~w~~~~~~l~~D~e~~~s~l 317 (415)
T COG2733 238 VNSFLDEVRRDPDHKMRKDFDRFLFDLIDDLYHDPGMAARAEAIKSYLKEDEAIATAAGDMWTSLSEWLKEDYESEDSML 317 (415)
T ss_pred HHHHHHHHHhCcCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCchhHH
Confidence 333444445577777665 5667778875 7788999987542 1233333444 2222 2222 36
Q ss_pred HHHhHHHHHHHHHHhhccCCCCcccccCCHHHHHHHHHHHHHHHHHHhh
Q psy5197 513 AVKISELMQDYMQALRSKDETPGSLLSLTREAEEAILDKYKAQVIAMQE 561 (564)
Q Consensus 513 a~eI~~~idellq~~Rs~~d~p~~l~s~t~~~e~~~ld~~~~~~~~~q~ 561 (564)
...|-....++-+++.++++.-..+=.-...|.+.|++.|..+|...-.
T Consensus 318 ~~~l~~~~~~~Ge~l~~D~~lr~kln~~~~~aa~~l~e~~~~~it~~I~ 366 (415)
T COG2733 318 RKRLARAVQSVGEELIADDALRAKLNEHLVQAAERLAEEKHAEITKHIS 366 (415)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 6677777888888888777777777778889999999999999976543
No 22
>PLN03060 inositol phosphatase-like protein; Provisional
Probab=64.05 E-value=32 Score=34.92 Aligned_cols=119 Identities=16% Similarity=0.204 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHh-----------------------hhhhHHHHHHHHHHHccCCCChhHHHHHHHHHHHHHhhh-----
Q psy5197 411 LIVMHQQRVAARI-----------------------NQHKKDAMNCYIEALNDVSLNTHKVQKCLQKLLRALHKD----- 462 (564)
Q Consensus 411 LvetH~aRVeA~L-----------------------NdrRR~Ale~Yl~ALq~~pP~phrVl~aLkrYvRAe~KD----- 462 (564)
|||+|+-||.+-. .+.|..-.+.|+.|+..||=+-+..-+.|..+.+....+
T Consensus 32 LVE~HLl~~n~~f~yD~lfAlGlvt~fd~fm~GY~Pee~~~~IF~Alc~a~~~dp~~~r~dA~~l~~~a~~~s~~~l~~~ 111 (206)
T PLN03060 32 LVQQHLMRYNATYKYDPIFALGFVTVYDQLMDGYPNATDRDAIFKAYIEALGEDPDQYRKDAKKLEEWASSQSASGIADF 111 (206)
T ss_pred HHHHHHHHhccCceeCchHHhhHHHHHHHHHcCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 8999999987643 245556677888888888877777766666665433222
Q ss_pred ---------------------------hhhHHHHHHHHhhcChhHHhhcchhHHHHHHHHHHHhhhhhhhhhhchhhHHH
Q psy5197 463 ---------------------------RHHTIAHYKHLLATNLDFAVKEKPMTLEHLVDIDHTINQSMTMLQRHPALAVK 515 (564)
Q Consensus 463 ---------------------------R~HTirHYqHv~avdPekAaqmk~qvltHL~vIeeRmNQSLsLLyr~P~la~e 515 (564)
|.+.|==|.=+-..+++... +=.++.+-|..-.+|++.=|+|-..+=+=+.+
T Consensus 112 l~~~~~~~~~l~~~~~~~~~~~~f~YSRl~AIGL~~LLe~a~~~d~~-~l~~l~~~L~ls~~kv~kDL~lYrsnLeKm~q 190 (206)
T PLN03060 112 NSGDGEVEAVLKDIAERAAGKTKFHYSRFFAIGLFRLLECAKASDPA-VLEKLSKALNVSKRSVDRDLDVYRNLLSKLAQ 190 (206)
T ss_pred HhcccccchHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHcCCCCHH-HHHHHHHHcCCCHHHHHhhHHHHHhHHHHHHH
Confidence 22223233333233332111 22344455677777888888877777677778
Q ss_pred hHHHHHHHHHHhhcc
Q psy5197 516 ISELMQDYMQALRSK 530 (564)
Q Consensus 516 I~~~idellq~~Rs~ 530 (564)
....|+|++++.|-+
T Consensus 191 a~el~ee~~~~erkK 205 (206)
T PLN03060 191 AKELIKEYIDRSVCS 205 (206)
T ss_pred HHHHHHHHHHHHhcc
Confidence 888899999888754
No 23
>TIGR03060 PS_II_psb29 photosystem II biogenesis protein Psp29. Psp29, originally designated sll1414 in Synechocystis 6803, is found universally in Cyanobacteria and in Arabidopsis. It was isolated and partially sequenced from purified photosystem II (PS II) in Synechocystis. While its function is unknown, mutant studies show an impairment in photosystem II biogenesis and/or stability, rather than in PS II core function.
Probab=63.97 E-value=31 Score=35.22 Aligned_cols=120 Identities=15% Similarity=0.095 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHh-----------------------hhhhHHHHHHHHHHHccCCCChhHHHHHHHHHHHHHhhh-----
Q psy5197 411 LIVMHQQRVAARI-----------------------NQHKKDAMNCYIEALNDVSLNTHKVQKCLQKLLRALHKD----- 462 (564)
Q Consensus 411 LvetH~aRVeA~L-----------------------NdrRR~Ale~Yl~ALq~~pP~phrVl~aLkrYvRAe~KD----- 462 (564)
|||+|+-||.+-. .+.|-.-.+.|+.|+..||=+-+..-+.|..+.+....+
T Consensus 34 LVElHLl~~n~~F~yDplfAlGlvt~fd~fm~GY~Pee~~~~IF~Alc~a~~~dp~~~r~dA~~l~~~a~~~s~~~i~~~ 113 (214)
T TIGR03060 34 LVELHLLSHQSDFKYDPLFALGLVTVFDRFMEGYRPEEHLDALFDALCNSNGFDPEQLREDAKQLLEQAKGKGLDEILSW 113 (214)
T ss_pred HHHHHHHHhccCceeCchHHhhHHHHHHHHHcCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 8999999987643 245566677888888888888777777777766543222
Q ss_pred --------------------------hhhHHHHHHHHhhcC------hhHHhhcchhHHHHHHHHHHHhhhhhhhhhhch
Q psy5197 463 --------------------------RHHTIAHYKHLLATN------LDFAVKEKPMTLEHLVDIDHTINQSMTMLQRHP 510 (564)
Q Consensus 463 --------------------------R~HTirHYqHv~avd------PekAaqmk~qvltHL~vIeeRmNQSLsLLyr~P 510 (564)
|.+.|==|.=+-..+ |++-.++=.++-+-|..-.+|++.=|+|-..+=
T Consensus 114 l~~~~~~~~~~l~l~~ia~n~~f~YSRl~AIGL~~LLe~a~~~~~~d~~~~~~~l~~l~~~L~ls~~kv~KDL~lYrsnL 193 (214)
T TIGR03060 114 LTQANLSNGGGDTLQGIAGRHKFKYSRLFAIGLYSLLEEAAPDKDIDEEDLNEILKELSEALGLSYDRVEKDLDLYKSNL 193 (214)
T ss_pred HhccccCCcchhHHHHHhcCCCcchHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHHHcCCCHHHHHhhHHHHHhHH
Confidence 333333344333333 333445556777777888888888888877777
Q ss_pred hhHHHhHHHHHHHHHHhhcc
Q psy5197 511 ALAVKISELMQDYMQALRSK 530 (564)
Q Consensus 511 ~la~eI~~~idellq~~Rs~ 530 (564)
+=+.+....|+|++.+.|-+
T Consensus 194 eKm~Qa~el~ee~~~~erkK 213 (214)
T TIGR03060 194 EKMKQALELMEETLEAERRK 213 (214)
T ss_pred HHHHHHHHHHHHHHHHHhcc
Confidence 77788889999999988854
No 24
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=62.94 E-value=41 Score=34.46 Aligned_cols=30 Identities=10% Similarity=0.127 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q psy5197 386 KQKMTLRFQQTVQSLEEEGNAEKHQLIVMH 415 (564)
Q Consensus 386 rq~l~qhFQ~~V~sLEeE~a~ErqqLvetH 415 (564)
=..++.+|-..+..|+.+...=-+++..++
T Consensus 140 l~~ivd~~~~~l~~l~~~~~~le~~l~~~~ 169 (318)
T TIGR00383 140 FDAIIDSYFPLLENIEDELEELEDEIISGP 169 (318)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHhcCC
Confidence 345778888888888888766545555543
No 25
>cd07625 BAR_Vps17p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps17p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp17p forms a dimer with Vps5p, the yeast counterpart of human SNX1, and is part of the retromer complex that mediates the transport of the carboxypeptidase Y receptor Vps10p from endosomes to Golgi. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=61.67 E-value=1.3e+02 Score=30.95 Aligned_cols=114 Identities=11% Similarity=0.219 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHhhcccCCCCchHHHHHH--H-HHHHHHHHHHHHHhhhhHHHHHHHHHH
Q psy5197 340 HAFKEALQRLEEMHREKVTKVMKDWSDLEERYQDMRSKSPGVAEDFKQK--M-TLRFQQTVQSLEEEGNAEKHQLIVMHQ 416 (564)
Q Consensus 340 ~~F~~Ak~~LE~rhr~rm~~VmKEW~eAe~q~knL~~adPkaae~~rq~--l-~qhFQ~~V~sLEeE~a~ErqqLvetH~ 416 (564)
..+...|+-|..||. +|++|..|+.+.+.-. -++..+|.. + ..+=...+++|++ |..+.+-...+.
T Consensus 112 ~~~~~vKealtnR~~-----~~re~~qAq~~~~~K~----~~~~rlk~s~~i~~~KvdeA~~~l~e--A~~~e~~l~~k~ 180 (230)
T cd07625 112 RDAYVVKEALTNRHL-----LMRELIQAQQNTKSKQ----EAARRLKAKRDINPLKVDEAIRQLEE--ATKHEHDLSLKL 180 (230)
T ss_pred HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHH----HHHHHHhcCCCCChHhHHHHHHHHHH--HHHHHHHHHHHH
Confidence 357789999999885 6999999998766541 111222211 0 1233445556665 334444455677
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHccCCCChhHHHHHHHHHHHHHhhhhhhHHHHHHHHh
Q psy5197 417 QRVAARINQHKKDAMNCYIEALNDVSLNTHKVQKCLQKLLRALHKDRHHTIAHYKHLL 474 (564)
Q Consensus 417 aRVeA~LNdrRR~Ale~Yl~ALq~~pP~phrVl~aLkrYvRAe~KDR~HTirHYqHv~ 474 (564)
.||-..|..=++.-...+ ...+..+|+.|+...=-=-+=+|++++-|+
T Consensus 181 ~rIs~nm~~E~~rf~~~~----------~~dl~~~l~ey~~~~ie~erk~l~~lE~~r 228 (230)
T cd07625 181 KRITGNMLIERKEWTDWT----------EEDLQSAIREYTLRKIEYERKKLSLLERIR 228 (230)
T ss_pred HHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 787766654433333322 234667888887765433334577766554
No 26
>PF06188 HrpE: HrpE/YscL/FliH and V-type ATPase subunit E; InterPro: IPR009335 This family consists of several bacterial HrpE proteins, which are believed to function on the type III secretion system, specifically the secretion of HrpZ (harpinPss) []. This family also includes V-type proton ATPase subunit E proteins. This subunit appears to form a tight interaction with subunit G in the F0 complex. Subunits E and G may act together as stators to prevent certain subunits from rotating with the central rotary element []. PF01991 from PFAM also contains V-type ATPase subunit E proteins. There is an evolutionary link between type III secretion systems and membrane-associated proton translocating ATPases [].
Probab=60.63 E-value=51 Score=32.53 Aligned_cols=79 Identities=18% Similarity=0.296 Sum_probs=49.9
Q ss_pred HHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHccCCCC
Q psy5197 365 SDLEERYQDMRSKSPGVAEDFKQKMTLRFQQTVQSLEEEGNAEKHQLIVMHQQRVAARINQHKKDAMNCYIEALNDVSLN 444 (564)
Q Consensus 365 ~eAe~q~knL~~adPkaae~~rq~l~qhFQ~~V~sLEeE~a~ErqqLvetH~aRVeA~LNdrRR~Ale~Yl~ALq~~pP~ 444 (564)
.+|+.++..|.. .+ ++...+-|.....+|=++...++++|...=..+|.-+|| .||+.+|.. .|.
T Consensus 48 ~~Ae~eAe~l~~----~a---~e~a~~~~~q~a~~ll~~~~~~~e~l~~~l~~~~~~ll~----~al~~lL~e----~~~ 112 (191)
T PF06188_consen 48 QQAEEEAEALLE----QA---YEQAEAQFWQQANALLQEWQQQREQLLQQLEEQAEELLS----QALERLLDE----TPD 112 (191)
T ss_pred HHHHHHHHHHHH----HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHc----CCc
Confidence 456677776633 11 334455555555566666666777776666666666665 578777765 467
Q ss_pred hhHHHHHHHHHHHH
Q psy5197 445 THKVQKCLQKLLRA 458 (564)
Q Consensus 445 phrVl~aLkrYvRA 458 (564)
+.+|-..|++.++.
T Consensus 113 ~qrv~aLlr~l~~~ 126 (191)
T PF06188_consen 113 QQRVAALLRQLLAS 126 (191)
T ss_pred hHHHHHHHHHHHHh
Confidence 88887777777644
No 27
>KOG4643|consensus
Probab=60.10 E-value=4.3e+02 Score=33.04 Aligned_cols=174 Identities=18% Similarity=0.284 Sum_probs=112.8
Q ss_pred HHHHHHHHHHHHHhhhh-chHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhh
Q psy5197 346 LQRLEEMHREKVTKVMK-DWSDLEERYQDMRSKSPGVAEDFKQKMTLRFQQTVQSLEEEGNAEKHQLIVMHQQRVAARIN 424 (564)
Q Consensus 346 k~~LE~rhr~rm~~VmK-EW~eAe~q~knL~~adPkaae~~rq~l~qhFQ~~V~sLEeE~a~ErqqLvetH~aRVeA~LN 424 (564)
|.|+|+-.+. ++|.- +-+.++.|.+-+++-.-++ +|-.++|+ +++.+..|+.+..-.|+|+.+-|..=-. |-+
T Consensus 263 kdRveelked--N~vLleekeMLeeQLq~lrarse~~--tleseiiq-lkqkl~dm~~erdtdr~kteeL~eEnst-Lq~ 336 (1195)
T KOG4643|consen 263 KDRVEELKED--NRVLLEEKEMLEEQLQKLRARSEGA--TLESEIIQ-LKQKLDDMRSERDTDRHKTEELHEENST-LQV 336 (1195)
T ss_pred HHHHHHHHhh--hHHHHHHHHHHHHHHHHHHhccccC--ChHHHHHH-HHHHHHHHHHhhhhHHHHHHHHHHHHHH-HHH
Confidence 3444443333 44543 4778899999998876553 46677776 7888999999999999999998865322 222
Q ss_pred hhhHHHHHHHHHHHcc-----CCCCh--hHHHHHHHH--HHHHHhhhhhhHHHHHHHHhhcChh-HHhhc---c---hhH
Q psy5197 425 QHKKDAMNCYIEALND-----VSLNT--HKVQKCLQK--LLRALHKDRHHTIAHYKHLLATNLD-FAVKE---K---PMT 488 (564)
Q Consensus 425 drRR~Ale~Yl~ALq~-----~pP~p--hrVl~aLkr--YvRAe~KDR~HTirHYqHv~avdPe-kAaqm---k---~qv 488 (564)
.. .+|..=..-+|. +-++. -+--.-|.+ .+..+=+||.||=. ++-..+.+.+ .+-+| + ..+
T Consensus 337 q~--eqL~~~~ellq~~se~~E~en~Sl~~e~eqLts~ralkllLEnrrlt~t-leelqsss~Ee~~SK~leleke~KnL 413 (1195)
T KOG4643|consen 337 QK--EQLDGQMELLQIFSENEELENESLQVENEQLTSDRALKLLLENRRLTGT-LEELQSSSYEELISKHLELEKEHKNL 413 (1195)
T ss_pred HH--HHhhhhhhHhhhhhcchhhhhhhHHHHHHHhhhHHHHHHHHHhHHHHHH-HHHHhhhhHHHHHHHHHHHHHHhHhH
Confidence 22 445555555555 33442 122223444 77778888888743 3334444443 22221 1 112
Q ss_pred HHHHHHHHHHhhhhhhhhhhchhhHHHhHHHHHHHHHHhh
Q psy5197 489 LEHLVDIDHTINQSMTMLQRHPALAVKISELMQDYMQALR 528 (564)
Q Consensus 489 ltHL~vIeeRmNQSLsLLyr~P~la~eI~~~idellq~~R 528 (564)
=-....+++|+||.+..|-..-+++..++.+-+.++++.+
T Consensus 414 s~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~ 453 (1195)
T KOG4643|consen 414 SKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLEETS 453 (1195)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2234678999999999999999999999999999988644
No 28
>KOG3901|consensus
Probab=59.78 E-value=15 Score=33.79 Aligned_cols=56 Identities=18% Similarity=0.128 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHccCCCChhHHHHHH
Q psy5197 392 RFQQTVQSLEEEGNAEKHQLIVMHQQRVAARINQHKKDAMNCYIEALNDVSLNTHKVQKCL 452 (564)
Q Consensus 392 hFQ~~V~sLEeE~a~ErqqLvetH~aRVeA~LNdrRR~Ale~Yl~ALq~~pP~phrVl~aL 452 (564)
=++.+|+.||+=+-.==-.| ||.++-.. .|-|..+|.++-+|..||+.--||-..|
T Consensus 28 P~~~tv~~Le~iV~~Yi~el--t~~a~~~g---~rgk~~veD~~f~lRkDpkK~~Rv~eLL 83 (109)
T KOG3901|consen 28 PYPETVDLLEDIVLEYITEL--THAAMEIG---KRGKVKVEDFKFLLRKDPKKLGRVKELL 83 (109)
T ss_pred ccHhHHHHHHHHHHHHHHHH--HHHHHHhc---ccCceeHHHHHHHHHhChHHHhHHHHHH
Confidence 36889999998777655555 89888777 6678999999999999998877775444
No 29
>PF03179 V-ATPase_G: Vacuolar (H+)-ATPase G subunit; InterPro: IPR005124 This family represents the eukaryotic vacuolar (H+)-ATPase (V-ATPase) G subunit. V-ATPases generate an acidic environment in several intracellular compartments. Correspondingly, they are found as membrane-attached proteins in several organelles. They are also found in the plasma membranes of some specialised cells. V-ATPases consist of peripheral (V1) and membrane integral (V0) heteromultimeric complexes. The G subunit is part of the V1 subunit, but is also thought to be strongly attached to the V0 complex. It may be involved in the coupling of ATP degradation to H+ translocation.; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015992 proton transport, 0016471 vacuolar proton-transporting V-type ATPase complex; PDB: 2KWY_A 2K88_A.
Probab=58.92 E-value=1.2e+02 Score=26.78 Aligned_cols=85 Identities=15% Similarity=0.289 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhchHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q psy5197 343 KEALQRLEEMHREKVTKVMKDWSDLEERYQDMRSKSPGVAEDFKQKMTLRFQQTVQSLEEEGNAEKHQLIVMHQQRVAAR 422 (564)
Q Consensus 343 ~~Ak~~LE~rhr~rm~~VmKEW~eAe~q~knL~~adPkaae~~rq~l~qhFQ~~V~sLEeE~a~ErqqLvetH~aRVeA~ 422 (564)
.+|+.-+++-..+|..++..-=.+|+...... |...-+.|+......+.+....-..|.......+..|
T Consensus 14 ~eA~~iV~~Ar~~r~~~lk~Ak~eA~~ei~~~-----------r~~~e~~~~~~~~~~~~~~~~~~~~l~~et~~~i~~i 82 (105)
T PF03179_consen 14 KEAQEIVEEARKEREQRLKQAKEEAEKEIEEF-----------RAEAEEEFKEKEAEAEGEAEQEAEELEKETEEKIEEI 82 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHH-S------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHH
Confidence 46777787777777777766667776666555 8889999999999999999999999998888888777
Q ss_pred hh---hhhHHHHHHHHHHH
Q psy5197 423 IN---QHKKDAMNCYIEAL 438 (564)
Q Consensus 423 LN---drRR~Ale~Yl~AL 438 (564)
-+ .++..++...+..+
T Consensus 83 ~~~~~~~~~~vv~~ll~~V 101 (105)
T PF03179_consen 83 KKSASKNKDKVVDMLLSRV 101 (105)
T ss_dssp HHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHhHHHHHHHHHHHH
Confidence 65 46667777666654
No 30
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=58.24 E-value=2e+02 Score=28.65 Aligned_cols=111 Identities=18% Similarity=0.329 Sum_probs=80.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q psy5197 339 HHAFKEALQRLEEMHREKVTKVMKDWSDLEERYQDMRSKSPGVAEDFKQKMTLRFQQTVQSLEEEGNAEKHQLIVMHQQR 418 (564)
Q Consensus 339 H~~F~~Ak~~LE~rhr~rm~~VmKEW~eAe~q~knL~~adPkaae~~rq~l~qhFQ~~V~sLEeE~a~ErqqLvetH~aR 418 (564)
...+..+|.++... .+.+..+..+-+.++.++..| +..|..|-.+|.++|+.+-+ -++.|--|++.-++=
T Consensus 85 K~~L~~~k~rl~~~-ek~l~~Lk~e~evL~qr~~kl--------e~ErdeL~~kf~~~i~evqQ-k~~~kn~lLEkKl~~ 154 (201)
T PF13851_consen 85 KQSLQNLKARLKEL-EKELKDLKWEHEVLEQRFEKL--------EQERDELYRKFESAIQEVQQ-KTGLKNLLLEKKLQA 154 (201)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 33444445555332 455666666777778888877 55699999999999999865 456788888877766
Q ss_pred HHHHhhhhhHHHHHHHHHHHccCCCChhHHHHHHHHHHHHHh
Q psy5197 419 VAARINQHKKDAMNCYIEALNDVSLNTHKVQKCLQKLLRALH 460 (564)
Q Consensus 419 VeA~LNdrRR~Ale~Yl~ALq~~pP~phrVl~aLkrYvRAe~ 460 (564)
+...| ++|..-|..+++|.+-+|-....|-+-|..-+..-+
T Consensus 155 l~~~l-E~keaqL~evl~~~nldp~~~~~v~~~l~~~l~~KN 195 (201)
T PF13851_consen 155 LSEQL-EKKEAQLNEVLAAANLDPAALSQVSKKLEDVLDSKN 195 (201)
T ss_pred HHHHH-HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 66555 567889999999999998888788777777665543
No 31
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=56.93 E-value=43 Score=25.89 Aligned_cols=53 Identities=13% Similarity=0.097 Sum_probs=37.8
Q ss_pred hhhhHHHHHHHHHHHccCCCChhHHHHHHHHHHHHHhh-hhhhHHHHHHHHhhcCh
Q psy5197 424 NQHKKDAMNCYIEALNDVSLNTHKVQKCLQKLLRALHK-DRHHTIAHYKHLLATNL 478 (564)
Q Consensus 424 NdrRR~Ale~Yl~ALq~~pP~phrVl~aLkrYvRAe~K-DR~HTirHYqHv~avdP 478 (564)
+.+=..|+..|..||+-+|-++.-.. .+..+-...+ +-.-.|.+|+.++..||
T Consensus 16 ~~~~~~A~~~~~~ai~~~p~~~~~~~--~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 16 QGDYEEAIEYFEKAIELDPNNAEAYY--NLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp TTHHHHHHHHHHHHHHHSTTHHHHHH--HHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHH--HHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 44456899999999999977655322 2333334444 56788999999999888
No 32
>PRK10780 periplasmic chaperone; Provisional
Probab=55.70 E-value=1.5e+02 Score=28.20 Aligned_cols=39 Identities=13% Similarity=0.244 Sum_probs=25.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHhhcc
Q psy5197 337 DEHHAFKEALQRLEEMHREKVTKVMKDWSDLEERYQDMR 375 (564)
Q Consensus 337 ~EH~~F~~Ak~~LE~rhr~rm~~VmKEW~eAe~q~knL~ 375 (564)
+++..|+++..+|+..--.+-+++-+.=.+...-++.+.
T Consensus 36 ~~~p~~k~~~~~le~~~~~~q~el~~~~~elq~~~~~~q 74 (165)
T PRK10780 36 QQVPQRTGVSKQLENEFKGRASELQRMETDLQAKMQKLQ 74 (165)
T ss_pred HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477889999999987766655555444444444444443
No 33
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=54.96 E-value=1.4e+02 Score=30.97 Aligned_cols=37 Identities=19% Similarity=0.161 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhh
Q psy5197 388 KMTLRFQQTVQSLEEEGNAEKHQLIVMHQQRVAARIN 424 (564)
Q Consensus 388 ~l~qhFQ~~V~sLEeE~a~ErqqLvetH~aRVeA~LN 424 (564)
.+++.++..+..|++.....-++.+....+++..+-+
T Consensus 191 ~~l~~~~~~Ld~l~~rL~~~~~~~l~~~~~~L~~l~~ 227 (319)
T PF02601_consen 191 RKLEQQQQRLDELKQRLKQAIQQKLQRKRQRLQNLSN 227 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677788888888888777777777777777766553
No 34
>PF01031 Dynamin_M: Dynamin central region; InterPro: IPR000375 Dynamin is a microtubule-associated force-producing protein of 100 Kd which is involved in the production of microtubule bundles. At the N terminus of dynamin is a GTPase domain (see IPR001401 from INTERPRO), and at the C terminus is a PH domain (see IPR001849 from INTERPRO). Between these two domains lies a central region of unknown function, which this entry represents.; GO: 0005525 GTP binding; PDB: 3ZVR_A 2AKA_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D 1JWY_B 1JX2_B 3SZR_A ....
Probab=54.50 E-value=2.6e+02 Score=28.72 Aligned_cols=166 Identities=13% Similarity=0.184 Sum_probs=70.4
Q ss_pred HHhhhhchHHHHHHHhhcccCCCCchHHHHH---HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q psy5197 357 VTKVMKDWSDLEERYQDMRSKSPGVAEDFKQ---KMTLRFQQTVQSLEEEGNAEKHQLIVMHQQRVAARINQHKKDAMNC 433 (564)
Q Consensus 357 m~~VmKEW~eAe~q~knL~~adPkaae~~rq---~l~qhFQ~~V~sLEeE~a~ErqqLvetH~aRVeA~LNdrRR~Ale~ 433 (564)
..+|.+.-.+++.+.+.|+..-|.....-+. .++..|+..+... ..+.-..=+.++.-++-|.|+.--+.....
T Consensus 82 ~~~I~~~l~~~~~eL~~lG~~~~~~~~~~~~~l~~~~~~f~~~~~~~---i~G~~~~~~~~~~l~~~ari~~~f~~~~~~ 158 (295)
T PF01031_consen 82 KSEIQKKLQEAEKELKRLGPPRPETPEEQRAYLLQIISKFSRIFKDA---IDGEYSDEFSTNELRGGARIRYIFNEWFDK 158 (295)
T ss_dssp HHHHHHHHHHHHHHHHTHHHCSSSCHHHHHHHHHHHHHHHHHHHHHH---HTT-------TTS--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHH---hcCCccccccccccchhhHHHHHHHhhhhh
Confidence 3556677888889999998866633333333 4566677666554 333222111222222222222211111111
Q ss_pred HHHHHccCCCChhHHHHHHHHHHHHHhhhhhhHHHHHHHHhhcChhHHhhcchhHHHHHHHHHHHhhhhhh-----hhhh
Q psy5197 434 YIEALNDVSLNTHKVQKCLQKLLRALHKDRHHTIAHYKHLLATNLDFAVKEKPMTLEHLVDIDHTINQSMT-----MLQR 508 (564)
Q Consensus 434 Yl~ALq~~pP~phrVl~aLkrYvRAe~KDR~HTirHYqHv~avdPekAaqmk~qvltHL~vIeeRmNQSLs-----LLyr 508 (564)
+ ++.-+|-..-...-++.+++.-.-.+.+-.=-|+-....=-+.-.+++.-.+..+..+-+.+.+.+. -+.+
T Consensus 159 ~---~~~~~~~~~~~~~eI~~~i~~~~G~elp~f~p~~afe~Li~~~i~~l~~Pa~~cv~~V~~~l~~i~~~~~~~~~~~ 235 (295)
T PF01031_consen 159 F---LEKIDPFEDLSDEEIRTAIRNSRGRELPGFVPESAFESLIRKQIEKLEEPALQCVEEVHEELQRIVEQVLEKEFER 235 (295)
T ss_dssp H---HHHTSHHHHHHHHHHHHHHHH--S-SSS-SCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHCHHHTT
T ss_pred h---hhhhccccchhHHHHHHHHHhhcccccccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhcchhcCC
Confidence 1 1222222222223333333333333332221111111111111122233333333333333322222 4678
Q ss_pred chhhHHHhHHHHHHHHHHhh
Q psy5197 509 HPALAVKISELMQDYMQALR 528 (564)
Q Consensus 509 ~P~la~eI~~~idellq~~R 528 (564)
+|.|...|...|.+++.+.+
T Consensus 236 fp~L~~~i~~~v~~~l~~~~ 255 (295)
T PF01031_consen 236 FPNLKEAIKEAVQQLLEECR 255 (295)
T ss_dssp SHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988654
No 35
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=50.99 E-value=2e+02 Score=32.37 Aligned_cols=31 Identities=13% Similarity=0.247 Sum_probs=15.7
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHhhhhh
Q psy5197 397 VQSLEEEGNAEKHQLIVMHQQRVAARINQHK 427 (564)
Q Consensus 397 V~sLEeE~a~ErqqLvetH~aRVeA~LNdrR 427 (564)
-+.|+++....++.|...|.+.|...+..-|
T Consensus 343 ~~~l~~~l~~~~~e~~~~~~~~i~~~v~~Er 373 (582)
T PF09731_consen 343 EEHLKNELREQAIELQREFEKEIKEKVEQER 373 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555555554433
No 36
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=50.68 E-value=1.5e+02 Score=32.21 Aligned_cols=42 Identities=14% Similarity=0.200 Sum_probs=22.2
Q ss_pred CCCCCCCchhhHHHHHHHHHHHHHHHHHHHhhhhchHHHHHH
Q psy5197 329 YFTHFEPKDEHHAFKEALQRLEEMHREKVTKVMKDWSDLEER 370 (564)
Q Consensus 329 Yfe~~~~~~EH~~F~~Ak~~LE~rhr~rm~~VmKEW~eAe~q 370 (564)
-+=.|+-.....++.....+|...=+.++..-...+..+..+
T Consensus 256 e~~~~~~~e~~q~Ld~l~~rL~~a~~~~L~~~~~~L~~L~~r 297 (438)
T PRK00286 256 ELAVPDRAELLQRLQQLQQRLARAMRRRLEQKRQRLDQLARR 297 (438)
T ss_pred HHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333444444556666666666555555555444444444444
No 37
>KOG2150|consensus
Probab=50.14 E-value=1.1e+02 Score=35.34 Aligned_cols=107 Identities=18% Similarity=0.169 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHhh---hhchHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhh
Q psy5197 348 RLEEMHREKVTKV---MKDWSDLEERYQDMRSKSPGVAEDFKQKMTLRFQQTVQSLEEEGNAEKHQLIVMHQQRVAARIN 424 (564)
Q Consensus 348 ~LE~rhr~rm~~V---mKEW~eAe~q~knL~~adPkaae~~rq~l~qhFQ~~V~sLEeE~a~ErqqLvetH~aRVeA~LN 424 (564)
+|=+..|+|-.-| ||.=+=--.-..+-.+-||| |..|+..++--+.+|..||.|+-+=--+-.++|..|-.=++-
T Consensus 81 rlIE~~MErfK~vEke~KtKa~SkegL~~~~klDPk--Ekek~d~~~wi~~~ideLe~q~d~~ea~~~e~~~erh~~H~~ 158 (575)
T KOG2150|consen 81 RLIEQRMERFKAVEKEMKTKAFSKEGLSAAEKLDPK--EKEKRDTMDWISNQIDELERQVDSFEAEELERFIERHRWHQQ 158 (575)
T ss_pred HHHHHHHHHHHHHHHHhhccccchhhccccccCChH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566664444 33322222233445667998 567888999999999999999876333444555555555543
Q ss_pred hhhHHHHHHHHHHHccCCC---ChhHHHHHHHHHHHHHhh
Q psy5197 425 QHKKDAMNCYIEALNDVSL---NTHKVQKCLQKLLRALHK 461 (564)
Q Consensus 425 drRR~Ale~Yl~ALq~~pP---~phrVl~aLkrYvRAe~K 461 (564)
-||.-|.-|+.+-- ....|...++.||+--|.
T Consensus 159 -----~lEliLr~L~N~E~~pe~v~~vqDdi~yyVe~nqd 193 (575)
T KOG2150|consen 159 -----KLELILRLLDNDELDPEAVNKVQDDITYYVESNQD 193 (575)
T ss_pred -----HHHHHHHHhhccccCHHHHhhhhHHHHHHHHhccC
Confidence 37888888987633 345678889999987665
No 38
>PRK13266 Thf1-like protein; Reviewed
Probab=49.81 E-value=80 Score=32.54 Aligned_cols=120 Identities=17% Similarity=0.174 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHh-----------------------hhhhHHHHHHHHHHHccCCCChhHHHHHHHHHHHHHhhh-----
Q psy5197 411 LIVMHQQRVAARI-----------------------NQHKKDAMNCYIEALNDVSLNTHKVQKCLQKLLRALHKD----- 462 (564)
Q Consensus 411 LvetH~aRVeA~L-----------------------NdrRR~Ale~Yl~ALq~~pP~phrVl~aLkrYvRAe~KD----- 462 (564)
|||+|+-||.+-. .+.|-.-.+.|+.|+..||=+-+..-+.|..+.+....+
T Consensus 34 LVElHLl~~n~~F~yDplfAlGlvt~fd~fm~GY~Pee~~~~IF~Alc~a~~~dp~~~r~dA~~l~~~a~~~s~~~i~~~ 113 (225)
T PRK13266 34 LVELHLLSVNSDFKYDPLFALGLVTVFDRFMQGYRPEEHKDSIFNALCQAVGFDPEQLRQDAERLLELAKGKSLKEILSW 113 (225)
T ss_pred HHHHHHHHhccCceeCchHHhhHHHHHHHHHcCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 8999999987542 245556667788888888777777766666665543221
Q ss_pred ----------------------------hhhHHHHHHHHhh------cChhHHhhcchhHHHHHHHHHHHhhhhhhhhhh
Q psy5197 463 ----------------------------RHHTIAHYKHLLA------TNLDFAVKEKPMTLEHLVDIDHTINQSMTMLQR 508 (564)
Q Consensus 463 ----------------------------R~HTirHYqHv~a------vdPekAaqmk~qvltHL~vIeeRmNQSLsLLyr 508 (564)
|.+.|==|.=+-. .||++-.++=.++-+-|..-.+|++.=|+|-..
T Consensus 114 l~~~~~~~~~~l~~~l~~ia~~~~f~YSRl~AIGL~~LLe~a~~~~~~d~~~~~~~l~~l~~~L~ls~~kv~KDL~lYrs 193 (225)
T PRK13266 114 LTQKALGEPGGLLATLLAIANNSKFKYSRLFAIGLYTLLEEAQPDLVKDEEKLNEALKDISEGLGLSKEKVEKDLDLYRS 193 (225)
T ss_pred HhccccccchhHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHHHcCCCHHHHHhhHHHHHh
Confidence 3333333333332 344555566677777788888888888888777
Q ss_pred chhhHHHhHHHHHHHHHHhhcc
Q psy5197 509 HPALAVKISELMQDYMQALRSK 530 (564)
Q Consensus 509 ~P~la~eI~~~idellq~~Rs~ 530 (564)
+=+=+.+....|+|++.+.|-+
T Consensus 194 nLeKm~Qa~el~ee~~~~erkK 215 (225)
T PRK13266 194 NLEKMEQALELIEETLEAERKK 215 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 7777778888999999887754
No 39
>KOG1265|consensus
Probab=49.12 E-value=1.2e+02 Score=37.30 Aligned_cols=40 Identities=18% Similarity=0.237 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhhh
Q psy5197 388 KMTLRFQQTVQSLEEEGNAEKHQLIVMHQQRVAARINQHK 427 (564)
Q Consensus 388 ~l~qhFQ~~V~sLEeE~a~ErqqLvetH~aRVeA~LNdrR 427 (564)
.-|+.|=+-..-|++-....-.||++.|++-.+++..+.+
T Consensus 1128 s~i~~~V~e~krL~~~~~k~~e~L~k~~~~~leql~e~~k 1167 (1189)
T KOG1265|consen 1128 SNIKEFVEERKRLAEKQSKRQEQLVKKHLEVLEQLAEEEK 1167 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 3466777777788888777888899999888888877743
No 40
>PLN00047 photosystem II biogenesis protein Psb29; Provisional
Probab=48.76 E-value=69 Score=34.06 Aligned_cols=132 Identities=17% Similarity=0.258 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHh-----------------------hhhhHHHHHHHHHHHccCCCCh
Q psy5197 389 MTLRFQQTVQSLEEEGNAEKHQLIVMHQQRVAARI-----------------------NQHKKDAMNCYIEALNDVSLNT 445 (564)
Q Consensus 389 l~qhFQ~~V~sLEeE~a~ErqqLvetH~aRVeA~L-----------------------NdrRR~Ale~Yl~ALq~~pP~p 445 (564)
++--|..+|+-| |||+|+-||.+-. .+.|-.-.+.|+.||..||=+-
T Consensus 73 IpsiYrrvvdEL----------LVElHLLs~n~~F~yDplFALGlVtvfd~fm~GY~Pee~~~~IF~Alc~a~g~Dp~qy 142 (283)
T PLN00047 73 IPSIYSTVLQEL----------LVQQHLMRYKKTYRYDPVFALGFVTVYDQLMEGYPSDEDRDAIFKAYIKALGEDPEQY 142 (283)
T ss_pred CcHHHHHHHHHH----------HHHHHHHHhccCceeCchhhhhhHHHHHHHHccCCChHHHHHHHHHHHHHcCCCHHHH
Confidence 444555666655 9999999987542 4556677788999999998888
Q ss_pred hHHHHHHHHHHHHHhhhh--------------hhHHH---------HHHHHhh---------cChhHHhhcchhHHHHHH
Q psy5197 446 HKVQKCLQKLLRALHKDR--------------HHTIA---------HYKHLLA---------TNLDFAVKEKPMTLEHLV 493 (564)
Q Consensus 446 hrVl~aLkrYvRAe~KDR--------------~HTir---------HYqHv~a---------vdPekAaqmk~qvltHL~ 493 (564)
++.-+.|..+.+....+= +..|. ||--++| .+++.-. +=.++.+-|.
T Consensus 143 r~dA~~l~~~A~~~s~~~l~~~l~~~~~l~~~l~~IA~~a~~~~~f~YSRlfAIGLf~LLe~a~~~d~~-~l~~l~e~Lg 221 (283)
T PLN00047 143 RKDAAKLEEWARSQTGSSLVDFSSKEGEIEGILKDIAERAGSKGKFSYSRFFAIGLFRLLELANATEPT-ALEKLCAALN 221 (283)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHhcchHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCCCCHH-HHHHHHHHcC
Confidence 888777777766533222 11221 5555554 3332111 2233555566
Q ss_pred HHHHHhhhhhhhhhhchhhHHHhHHHHHHHHHHhhccC
Q psy5197 494 DIDHTINQSMTMLQRHPALAVKISELMQDYMQALRSKD 531 (564)
Q Consensus 494 vIeeRmNQSLsLLyr~P~la~eI~~~idellq~~Rs~~ 531 (564)
.-.++++.=|+|-..+=+=..+....|+|++.+.|-+.
T Consensus 222 ls~~kv~KDLdlYrsnLeKm~QA~elmeE~~~~EkKKr 259 (283)
T PLN00047 222 INKRSVDRDLDVYRGLLSKLVQAKELLKEYVEREKKKQ 259 (283)
T ss_pred CCHHHHHhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67788888888777777777788889999999888665
No 41
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=47.71 E-value=1e+02 Score=34.61 Aligned_cols=77 Identities=10% Similarity=0.148 Sum_probs=45.5
Q ss_pred HHhhhhchHHHHHHHhhccc-CCCCchHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH----HHHHHH---HHhhhhhH
Q psy5197 357 VTKVMKDWSDLEERYQDMRS-KSPGVAEDFKQKMTLRFQQTVQSLEEEGNAEKHQLIVM----HQQRVA---ARINQHKK 428 (564)
Q Consensus 357 m~~VmKEW~eAe~q~knL~~-adPkaae~~rq~l~qhFQ~~V~sLEeE~a~ErqqLvet----H~aRVe---A~LNdrRR 428 (564)
|+++-.+-.+++.+...|.. ..|.+- =+.--+.-+.+||++.+.||.+|... -+.... .-|+=.+.
T Consensus 288 I~~Le~qLa~~~aeL~~L~~~~~p~sP------qV~~l~~rI~aLe~QIa~er~kl~~~~g~~~la~~laeYe~L~le~e 361 (434)
T PRK15178 288 IAGFETQLAEAKAEYAQLMVNGLDQNP------LIPRLSAKIKVLEKQIGEQRNRLSNKLGSQGSSESLSLFEDLRLQSE 361 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCC------chhHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHH
Confidence 55666666666666666644 233332 12223445678888888888888631 223333 44556667
Q ss_pred HHHHHHHHHHc
Q psy5197 429 DAMNCYIEALN 439 (564)
Q Consensus 429 ~Ale~Yl~ALq 439 (564)
.|-+.|.+||.
T Consensus 362 fAe~~y~sAla 372 (434)
T PRK15178 362 IAKARWESALQ 372 (434)
T ss_pred HHHHHHHHHHH
Confidence 77777766664
No 42
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=47.36 E-value=3.3e+02 Score=27.90 Aligned_cols=92 Identities=20% Similarity=0.212 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHccCCCChhHHHHHHHHHHHH---HhhhhhhHHHHHHHHhhcChhHHhhcchhHHHHHHHHHHHhhhhhh
Q psy5197 428 KDAMNCYIEALNDVSLNTHKVQKCLQKLLRA---LHKDRHHTIAHYKHLLATNLDFAVKEKPMTLEHLVDIDHTINQSMT 504 (564)
Q Consensus 428 R~Ale~Yl~ALq~~pP~phrVl~aLkrYvRA---e~KDR~HTirHYqHv~avdPekAaqmk~qvltHL~vIeeRmNQSLs 504 (564)
-..|..|+..+++.--=-.+=.+++..|..| .+|-|..--+- .....++|..+++..| +..+.+..++-.
T Consensus 108 ~e~L~eYiR~i~svK~~f~~R~k~~~~~~~a~~~L~kkr~~~~Kl---~~~~k~dK~~~~~~ev----~~~e~~~~~a~~ 180 (234)
T cd07664 108 SELLGDYIRLIAAVKGVFDQRMKCWQKWQDAQVTLQKKREAEAKL---QYANKPDKLQQAKDEI----KEWEAKVQQGER 180 (234)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhcCchhHHHHHHHHH----HHHHHHHHHHHH
Confidence 3467778877776522222223455555554 34444321111 1133478888888777 778888888776
Q ss_pred hhhhchhhHHHhHHHHHHHHHHhhcc
Q psy5197 505 MLQRHPALAVKISELMQDYMQALRSK 530 (564)
Q Consensus 505 LLyr~P~la~eI~~~idellq~~Rs~ 530 (564)
.+-.|..-|+.+|.-| +..|..
T Consensus 181 ---~fe~Is~~~k~El~rF-e~er~~ 202 (234)
T cd07664 181 ---DFEQISKTIRKEVGRF-EKERVK 202 (234)
T ss_pred ---HHHHHHHHHHHHHHHH-HHHHHH
Confidence 7777888888888655 445543
No 43
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=46.19 E-value=87 Score=28.67 Aligned_cols=65 Identities=11% Similarity=-0.070 Sum_probs=47.8
Q ss_pred hHHHHHHHHHHHccCCCChhHHHHHHHHHHHHHhhhhhhHHHHHHHHhhcChhH--HhhcchhHHHHHH
Q psy5197 427 KKDAMNCYIEALNDVSLNTHKVQKCLQKLLRALHKDRHHTIAHYKHLLATNLDF--AVKEKPMTLEHLV 493 (564)
Q Consensus 427 RR~Ale~Yl~ALq~~pP~phrVl~aLkrYvRAe~KDR~HTirHYqHv~avdPek--Aaqmk~qvltHL~ 493 (564)
-..|+..|-.||.-+|..+.-.++.=.-|.+ ..+..-.+.+|++++..+|.. +-..|-++...|.
T Consensus 74 ~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~--~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l~ 140 (144)
T PRK15359 74 YTTAINFYGHALMLDASHPEPVYQTGVCLKM--MGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMVD 140 (144)
T ss_pred HHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Confidence 4579999999999999888777665554543 455556999999999999985 4455555555543
No 44
>KOG4295|consensus
Probab=45.46 E-value=7.3 Score=38.99 Aligned_cols=44 Identities=16% Similarity=0.061 Sum_probs=35.7
Q ss_pred HHHhhhhccCCCCCcccccccccccccccCCCChhhhhhhhccccCCCCCCccccccccc
Q psy5197 230 MTVLKRRSARSPQNLCNVFFYFQGFIEVDQAATPEERHVANMQINGYENPTYKYFEIKDY 289 (564)
Q Consensus 230 ~~~~~r~~~~~p~~~~~~~~y~~G~~~~dq~~t~ee~~~~n~~~n~~Enp~Y~yfe~k~~ 289 (564)
.+.+.|||++..-..|..|+| +||.+ |.|+|.+..-+..-+...
T Consensus 92 ~~~~~r~~~d~~t~~C~~F~y-~GC~g---------------N~N~F~s~~~C~~~C~~~ 135 (295)
T KOG4295|consen 92 GTGSPRYYFDPKTKTCQPFIY-GGCGG---------------NSNNFLSSEECERACGSA 135 (295)
T ss_pred CCceeeeEEcCCCCeEeeeee-cCcCC---------------CcCcccCHHHHHHHhcCC
Confidence 467899999999999999999 68875 458888887777766644
No 45
>PRK15366 type III secretion system chaperone SsaE; Provisional
Probab=45.28 E-value=85 Score=27.76 Aligned_cols=59 Identities=19% Similarity=0.161 Sum_probs=49.8
Q ss_pred hHHHHHHHHhhcChhHHhhcchhHHHHHHHHHHHhhhhhhhhhhchhhHHHhHHHHHHHHHHhh
Q psy5197 465 HTIAHYKHLLATNLDFAVKEKPMTLEHLVDIDHTINQSMTMLQRHPALAVKISELMQDYMQALR 528 (564)
Q Consensus 465 HTirHYqHv~avdPekAaqmk~qvltHL~vIeeRmNQSLsLLyr~P~la~eI~~~idellq~~R 528 (564)
-||.|-+-.|.-||+.| ...+--|+.++.|+-|.|+-.. -|+=.+.+.-+.+..+|+.|
T Consensus 2 ~TLT~LEDsLr~~~~~a----~~~i~~L~aa~~rL~~al~~P~-sp~qYqq~t~l~ea~lqA~~ 60 (80)
T PRK15366 2 TTLTRLEDLLLHSREEA----KGIILQLRAARKQLEENNGKLQ-DPQQYQQNTLLLEAIEQAEN 60 (80)
T ss_pred cchhHHHHHHhcCHHHH----HHHHHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHHHHH
Confidence 48999999999999999 5678889999999999998663 57777788888888888766
No 46
>COG1536 FliG Flagellar motor switch protein [Cell motility and secretion]
Probab=44.81 E-value=90 Score=33.82 Aligned_cols=92 Identities=23% Similarity=0.241 Sum_probs=57.9
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHccCCCCh-hHHHHHHHHHHHHH-hhhhhhHHHHHHHHhhcChhHHhhcchhHHHH
Q psy5197 414 MHQQRVAARINQHKKDAMNCYIEALNDVSLNT-HKVQKCLQKLLRAL-HKDRHHTIAHYKHLLATNLDFAVKEKPMTLEH 491 (564)
Q Consensus 414 tH~aRVeA~LNdrRR~Ale~Yl~ALq~~pP~p-hrVl~aLkrYvRAe-~KDR~HTirHYqHv~avdPekAaqmk~qvltH 491 (564)
-+-+.|.+.||+..|.-+.++++-+...+|.. ..|-+.|+.-+-.. +.++ ..+++-+++ -.+|+|
T Consensus 147 ~~aa~vL~~l~~e~r~~v~~Ria~l~~v~p~al~~i~~~l~~~l~~~~~~~~----------~~~gg~~~~---aeIlN~ 213 (339)
T COG1536 147 DQAAEILSTLPEELRADVVKRIATLEGVSPEALAELENVLEKKLQSLVNEDY----------SKLGGIKAA---AEILNL 213 (339)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHhhccccc----------cccccHhHH---HHHHHh
Confidence 35678999999999999999999999887763 44455554444433 3333 233333311 235555
Q ss_pred HH-HHHHHhhhhhhhhhhchhhHHHhHHHH
Q psy5197 492 LV-DIDHTINQSMTMLQRHPALAVKISELM 520 (564)
Q Consensus 492 L~-vIeeRmNQSLsLLyr~P~la~eI~~~i 520 (564)
+. -++..+=.+|.. ..|.|+.+|++.|
T Consensus 214 ~d~~~e~~il~~l~~--~~~~la~~I~~km 241 (339)
T COG1536 214 LDRGTEKTILESLEE--EDPELAEEIKEKM 241 (339)
T ss_pred cchhHHHHHHHHHhh--cCHHHHHHHHHHH
Confidence 54 556666666655 6666666666654
No 47
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=44.63 E-value=5.7e+02 Score=29.83 Aligned_cols=154 Identities=15% Similarity=0.231 Sum_probs=82.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHH---------HhhhhHH
Q psy5197 338 EHHAFKEALQRLEEMHREKVTKVMKDWSDLEERYQDMRSKSPGVAEDFKQKMTLRFQQTVQSLE---------EEGNAEK 408 (564)
Q Consensus 338 EH~~F~~Ak~~LE~rhr~rm~~VmKEW~eAe~q~knL~~adPkaae~~rq~l~qhFQ~~V~sLE---------eE~a~Er 408 (564)
.|-.++.+=-.++..-+..+...-+.|..++++.+.+.... .....-++..+--|+-|| ++...+|
T Consensus 140 ~~r~lLD~f~~~~~~~~~~~~~~y~~w~~~~~~l~~~~~~~-----~e~~~~~d~L~fq~~Ele~~~l~~gE~e~L~~e~ 214 (557)
T COG0497 140 LQRQLLDAFAGLEELAQEAYQEAYQAWKQARRELEDLQEKE-----RERAQRADLLQFQLEELEELNLQPGEDEELEEER 214 (557)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence 34444444333444444446667777777777777774433 223444555555555554 3444555
Q ss_pred HHHHHHH-----HHHHHHHhhh-h----hHHHH---HHHHHHHccCCCChhHHHHHHH-HHHHHHhhhhhhHHHHHHHHh
Q psy5197 409 HQLIVMH-----QQRVAARINQ-H----KKDAM---NCYIEALNDVSLNTHKVQKCLQ-KLLRALHKDRHHTIAHYKHLL 474 (564)
Q Consensus 409 qqLvetH-----~aRVeA~LNd-r----RR~Al---e~Yl~ALq~~pP~phrVl~aLk-rYvRAe~KDR~HTirHYqHv~ 474 (564)
++|-... .+.+.++|++ . --.-| .+.|..+...+|+-+.+...|. .|.-. -+=.|.|++|--=+
T Consensus 215 ~rLsn~ekl~~~~~~a~~~L~ge~~~~~~~~~l~~a~~~l~~~~~~d~~l~~~~~~l~ea~~~l--~ea~~el~~~~~~l 292 (557)
T COG0497 215 KRLSNSEKLAEAIQNALELLSGEDDTVSALSLLGRALEALEDLSEYDGKLSELAELLEEALYEL--EEASEELRAYLDEL 292 (557)
T ss_pred HHHhhHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHH--HHHHHHHHHHHhcC
Confidence 5553322 2344445542 1 01111 1223334444555555555554 33332 24567778887777
Q ss_pred hcChhHHhhcchhHHHHHHHHHHHhhhhhhhhhhc
Q psy5197 475 ATNLDFAVKEKPMTLEHLVDIDHTINQSMTMLQRH 509 (564)
Q Consensus 475 avdPekAaqmk~qvltHL~vIeeRmNQSLsLLyr~ 509 (564)
..||. .|..||+||++-.+|=.||
T Consensus 293 e~Dp~-----------~L~~ve~Rl~~L~~l~RKY 316 (557)
T COG0497 293 EFDPN-----------RLEEVEERLFALKSLARKY 316 (557)
T ss_pred CCCHH-----------HHHHHHHHHHHHHHHHHHh
Confidence 77874 4778999999888877665
No 48
>PF07739 TipAS: TipAS antibiotic-recognition domain; InterPro: IPR012925 TipAL is a bacterial transcriptional regulator of the MerR family. The tipA gene can be expressed as a long form, TipAL, and a short form, TipAS, which constitutes the C-terminal part of TipAL. TipAS forms the antibiotic-recognition domain []. This domain, which has an alpha-helical globin-like fold, is also found at the C terminus of other MerR family transcription factors, including Mta, a central regulator of multidrug resistance in Bacillus subtilis [], and SkgA from Caulobacter crescentus []. ; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent; PDB: 1NY9_A 3HH0_A 3QAO_A.
Probab=42.77 E-value=96 Score=26.87 Aligned_cols=56 Identities=14% Similarity=0.268 Sum_probs=21.5
Q ss_pred hchHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHH---hhhhHHHHHHHHHHHHHH
Q psy5197 362 KDWSDLEERYQDMRSKSPGVAEDFKQKMTLRFQQTVQSLEE---EGNAEKHQLIVMHQQRVA 420 (564)
Q Consensus 362 KEW~eAe~q~knL~~adPkaae~~rq~l~qhFQ~~V~sLEe---E~a~ErqqLvetH~aRVe 420 (564)
..|.+++.+..+|.+.+ -+.+.++..+-|+.+.+.+++ =.+.+=|+||..|+.=+.
T Consensus 13 ~~~~~~~~~~~~l~~~~---~~~~~~~~~~l~~~l~~~~~~g~~p~s~evq~l~~~~~~~~~ 71 (118)
T PF07739_consen 13 EAYAESEERLASLSKEE---WQELQKEWDELFAELAALMEEGVDPDSPEVQELAERWMELIN 71 (118)
T ss_dssp -----------------------TTHHHHHHHHHHHHHHHHT--TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHH---HHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHH
Confidence 34556666666665544 223345555555555555555 223367888888877776
No 49
>PF07739 TipAS: TipAS antibiotic-recognition domain; InterPro: IPR012925 TipAL is a bacterial transcriptional regulator of the MerR family. The tipA gene can be expressed as a long form, TipAL, and a short form, TipAS, which constitutes the C-terminal part of TipAL. TipAS forms the antibiotic-recognition domain []. This domain, which has an alpha-helical globin-like fold, is also found at the C terminus of other MerR family transcription factors, including Mta, a central regulator of multidrug resistance in Bacillus subtilis [], and SkgA from Caulobacter crescentus []. ; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent; PDB: 1NY9_A 3HH0_A 3QAO_A.
Probab=42.46 E-value=37 Score=29.43 Aligned_cols=74 Identities=18% Similarity=0.323 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHhhcccC--CCCchHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q psy5197 340 HAFKEALQRLEEMHREKVTKVMKDWSDLEERYQDMRSK--SPGVAEDFKQKMTLRFQQTVQSLEEEGNAEKHQLIVMH 415 (564)
Q Consensus 340 ~~F~~Ak~~LE~rhr~rm~~VmKEW~eAe~q~knL~~a--dPkaae~~rq~l~qhFQ~~V~sLEeE~a~ErqqLvetH 415 (564)
..|+.+++++...-.+.+.+++++|.+.-.+...+-.. +|... .=|.|+.+.+..+...=.-...--..|-.+|
T Consensus 13 ~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~l~~~~~~g~~p~s~--evq~l~~~~~~~~~~~~~~~~~~~~~l~~~y 88 (118)
T PF07739_consen 13 EAYAESEERLASLSKEEWQELQKEWDELFAELAALMEEGVDPDSP--EVQELAERWMELINQFTGGDPELLRGLAQMY 88 (118)
T ss_dssp --------------------TTHHHHHHHHHHHHHHHHT--TT-H--HHHHHHHHHHHHHHHSS---HHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCH--HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 56777777777777788999999999999998888776 67654 4677888888887755443333333444444
No 50
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=40.53 E-value=2.3e+02 Score=30.16 Aligned_cols=57 Identities=12% Similarity=0.043 Sum_probs=29.9
Q ss_pred HHhhhhhHHHHHHHHHHHccCCCChhHHHHHHHHHHHHHhhhhhhHHHHHHHHhhcChh
Q psy5197 421 ARINQHKKDAMNCYIEALNDVSLNTHKVQKCLQKLLRALHKDRHHTIAHYKHLLATNLD 479 (564)
Q Consensus 421 A~LNdrRR~Ale~Yl~ALq~~pP~phrVl~aLkrYvRAe~KDR~HTirHYqHv~avdPe 479 (564)
+..+.+-..|++.|..||..+|-++.-.+..-.-| ....+-.-.|.-|+.++..+|.
T Consensus 12 a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~--~~~g~~~eAl~~~~~Al~l~P~ 68 (356)
T PLN03088 12 AFVDDDFALAVDLYTQAIDLDPNNAELYADRAQAN--IKLGNFTEAVADANKAIELDPS 68 (356)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH--HHcCCHHHHHHHHHHHHHhCcC
Confidence 33444555667777777766665554322222222 2234444556666666666665
No 51
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=39.25 E-value=2.4e+02 Score=28.99 Aligned_cols=45 Identities=11% Similarity=0.200 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhhhHHH
Q psy5197 386 KQKMTLRFQQTVQSLEEEGNAEKHQLIVMHQQRVAARINQHKKDA 430 (564)
Q Consensus 386 rq~l~qhFQ~~V~sLEeE~a~ErqqLvetH~aRVeA~LNdrRR~A 430 (564)
.+..-+.=+.++....+++..+|+++++.-.+....++...|...
T Consensus 66 l~~a~~ea~~ii~~A~~eA~~~~~~il~~A~~ea~~~~~~a~~~i 110 (250)
T PRK14474 66 QQSLEQQRASFMAQAQEAADEQRQHLLNEAREDVATARDEWLEQL 110 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455557788888999999999999999988888887766543
No 52
>PF10189 DUF2356: Conserved protein (DUF2356); InterPro: IPR019333 The Integrator complex is involved in small nuclear RNA (snRNA) U1 and U2 transcription, and in their 3'-box-dependent processing. This complex associates with the C-terminal domain of RNA polymerase II largest subunit and is recruited to the U1 and U2 snRNAs genes []. This entry represents subunit 3 of this complex. The function of this subunit is unknown.
Probab=38.18 E-value=38 Score=34.93 Aligned_cols=51 Identities=14% Similarity=0.147 Sum_probs=46.4
Q ss_pred cChhHHhhcchhHHHHHHHHHHH-hhhhhhhhhhchhhHHHhHHHHHHHHHH
Q psy5197 476 TNLDFAVKEKPMTLEHLVDIDHT-INQSMTMLQRHPALAVKISELMQDYMQA 526 (564)
Q Consensus 476 vdPekAaqmk~qvltHL~vIeeR-mNQSLsLLyr~P~la~eI~~~idellq~ 526 (564)
-+|.-+++|+..|-+=++.|-++ +=+||+-|-.+|.|..++++.+.+++.+
T Consensus 176 ~~p~~~~~I~~gV~~a~~~i~~k~vv~sl~~l~~~~~ld~~lre~lr~~F~~ 227 (230)
T PF10189_consen 176 FDPPRRDRIRRGVRNAFRTIVEKGVVPSLSPLFDNPKLDPELRELLRETFPE 227 (230)
T ss_pred hCccHHHHHHHHHHHHHHHHHHcCCcCChHHhcCCcccCHHHHHHHHHHHHH
Confidence 57889999999999999999887 9999999999999999999998888764
No 53
>PF08941 USP8_interact: USP8 interacting; InterPro: IPR015036 This protein interacts with the UBP deubiquitinating enzyme USP8. ; GO: 0016881 acid-amino acid ligase activity, 0031386 protein tag, 0016567 protein ubiquitination; PDB: 2FZP_A 2GWF_B 2OGB_A.
Probab=37.40 E-value=15 Score=36.56 Aligned_cols=66 Identities=20% Similarity=0.306 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhhhH--HHHHHHHHHHccCCCChhHHHHHHHHH-----HHHHh
Q psy5197 388 KMTLRFQQTVQSLEEEGNAEKHQLIVMHQQRVAARINQHKK--DAMNCYIEALNDVSLNTHKVQKCLQKL-----LRALH 460 (564)
Q Consensus 388 ~l~qhFQ~~V~sLEeE~a~ErqqLvetH~aRVeA~LNdrRR--~Ale~Yl~ALq~~pP~phrVl~aLkrY-----vRAe~ 460 (564)
+++|.-|..+..|+++.+..++||.+ .|| .-|..|++||.+..|..+.|=..|.+| +...+
T Consensus 4 ~lVq~Qq~~i~ELk~~~aeq~~ql~e------------qkREl~lLk~yirAlR~sNP~~rni~dq~e~~evm~W~~sL~ 71 (179)
T PF08941_consen 4 ELVQQQQTKIAELKKEQAEQQQQLSE------------QKRELELLKEYIRALRSSNPVMRNIGDQLERDEVMQWVNSLP 71 (179)
T ss_dssp -----------------------------------------------------------------HHHHHHHHHHHHHSE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHhcCCCCCcCChHHHHhHHHHHHHHHhCC
Confidence 47778888899999999988888754 444 346789999999999988776666554 55555
Q ss_pred hhhhh
Q psy5197 461 KDRHH 465 (564)
Q Consensus 461 KDR~H 465 (564)
.-|.+
T Consensus 72 ~ArVt 76 (179)
T PF08941_consen 72 PARVT 76 (179)
T ss_dssp BEEES
T ss_pred hhhcc
Confidence 55544
No 54
>KOG2391|consensus
Probab=37.35 E-value=6.1e+02 Score=28.09 Aligned_cols=68 Identities=9% Similarity=0.199 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHhhhhchHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhhh
Q psy5197 348 RLEEMHREKVTKVMKDWSDLEERYQDMRSKSPGVAEDFKQKMTLRFQQTVQSLEEEGNAEKHQLIVMHQQRVAARINQHK 427 (564)
Q Consensus 348 ~LE~rhr~rm~~VmKEW~eAe~q~knL~~adPkaae~~rq~l~qhFQ~~V~sLEeE~a~ErqqLvetH~aRVeA~LNdrR 427 (564)
.|-.+.+++|++.-.+=+..-+.-..| +.-.++--.++++||+|..+-..++ -+|+.+.
T Consensus 218 klR~r~eeeme~~~aeq~slkRt~EeL------------~~G~~kL~~~~etLEqq~~~L~~ni---------DIL~~k~ 276 (365)
T KOG2391|consen 218 KLRRRREEEMERLQAEQESLKRTEEEL------------NIGKQKLVAMKETLEQQLQSLQKNI---------DILKSKV 276 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHH------------HhhHHHHHHHHHHHHHHHHHHHhhh---------HHHHHHH
Confidence 344444455554444444444444444 1234555667788888877655443 5788888
Q ss_pred HHHHHHHHH
Q psy5197 428 KDAMNCYIE 436 (564)
Q Consensus 428 R~Ale~Yl~ 436 (564)
|.||+.--.
T Consensus 277 ~eal~~~~n 285 (365)
T KOG2391|consen 277 REALEKAEN 285 (365)
T ss_pred HHHHhhhcc
Confidence 888875443
No 55
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=36.17 E-value=9.7e+02 Score=30.07 Aligned_cols=70 Identities=14% Similarity=0.196 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHhhcChhHHhhcchhHHHHHHHHHHHhhhhhhhhhhchhhHHHhHHHHHHHHH
Q psy5197 449 QKCLQKLLRALHKDRHHTIAHYKHLLATNLDFAVKEKPMTLEHLVDIDHTINQSMTMLQRHPALAVKISELMQDYMQ 525 (564)
Q Consensus 449 l~aLkrYvRAe~KDR~HTirHYqHv~avdPekAaqmk~qvltHL~vIeeRmNQSLsLLyr~P~la~eI~~~idellq 525 (564)
...++.+..+...+....|...+ +..++.+...-..+.-++..+|+.|+=--=.|..-.+++..|..|-+
T Consensus 716 ~~e~~~~~~~~~~~~d~~i~~i~-------~~i~~~~~~~~~~~~~le~~~~~eL~~~GvD~~~I~~l~~~i~~L~~ 785 (1201)
T PF12128_consen 716 RNELKAQWQELEAELDEQIEQIK-------QEIAAAKQEAKEQLKELEQQYNQELAGKGVDPERIQQLKQEIEQLEK 785 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 33444555555555555554443 23345666667778888888888887666666555566666655533
No 56
>KOG0319|consensus
Probab=35.70 E-value=2.4e+02 Score=33.79 Aligned_cols=48 Identities=17% Similarity=0.260 Sum_probs=28.0
Q ss_pred HhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHccCCCChhHHHHHHH
Q psy5197 402 EEGNAEKHQLIVMHQQRVAARINQHKKDAMNCYIEALNDVSLNTHKVQKCLQ 453 (564)
Q Consensus 402 eE~a~ErqqLvetH~aRVeA~LNdrRR~Ale~Yl~ALq~~pP~phrVl~aLk 453 (564)
++..-+|++.-..-.|-++-.|-++| =.+.++-|+.-| +||.++..++
T Consensus 624 ~~ee~~K~~eaieq~QeL~n~l~~~~--~~~A~~LA~tLd--~P~~~f~vi~ 671 (775)
T KOG0319|consen 624 QNEEQEKREEAIEQEQELENLLSQKR--YTKAFVLALTLD--KPHLVFTVIN 671 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh--hHHHHHhHhhcc--CchhHHHHHH
Confidence 33344666666667777777776432 234455556656 5666666555
No 57
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=35.47 E-value=2.9e+02 Score=30.59 Aligned_cols=94 Identities=11% Similarity=0.080 Sum_probs=50.5
Q ss_pred CCCCCCCCchhhHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhH
Q psy5197 328 PYFTHFEPKDEHHAFKEALQRLEEMHREKVTKVMKDWSDLEERYQDMRSKSPGVAEDFKQKMTLRFQQTVQSLEEEGNAE 407 (564)
Q Consensus 328 ~Yfe~~~~~~EH~~F~~Ak~~LE~rhr~rm~~VmKEW~eAe~q~knL~~adPkaae~~rq~l~qhFQ~~V~sLEeE~a~E 407 (564)
.-+=.|+-....+++...+.+|...-+.++.+-...+..+..+.. ...|+ ..+.+.+..+..|++....-
T Consensus 250 ae~~~p~~~el~qrLd~l~~RL~~am~~~L~~~r~rL~~L~~RL~---~~~P~-------~~L~~~~qrLd~L~~RL~~a 319 (432)
T TIGR00237 250 AEIVSPNQDELLQRLDGFNVRLHRAFDTLLHQKKARLEQLVASLQ---RQHPQ-------NKLALQQLQFEKLEKRKQAA 319 (432)
T ss_pred HHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---hcCHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 344455555666777788888877777777766666665555543 33443 23444444444444433222
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHccCCC
Q psy5197 408 KHQLIVMHQQRVAARINQHKKDAMNCYIEALNDVSL 443 (564)
Q Consensus 408 rqqLvetH~aRVeA~LNdrRR~Ale~Yl~ALq~~pP 443 (564)
-++.+ ++++..|..+...|.+-.|
T Consensus 320 ~~~~L------------~~k~~rL~~L~~rL~aLSP 343 (432)
T TIGR00237 320 LNKQL------------ERTRQKKTRLTKRLTQTNP 343 (432)
T ss_pred HHHHH------------HHHHHHHHHHHHHHHhcCH
Confidence 22222 2334555555666665544
No 58
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=35.19 E-value=3.3e+02 Score=24.29 Aligned_cols=49 Identities=12% Similarity=0.129 Sum_probs=35.2
Q ss_pred hhhHHHHHHHHHHHccCCCChhHHHHHHHHHHHHHhhhhhhHHHHHHHHhh
Q psy5197 425 QHKKDAMNCYIEALNDVSLNTHKVQKCLQKLLRALHKDRHHTIAHYKHLLA 475 (564)
Q Consensus 425 drRR~Ale~Yl~ALq~~pP~phrVl~aLkrYvRAe~KDR~HTirHYqHv~a 475 (564)
.+-..|+..+..+|..+|-+-.-....++-|.+. .++...+++|+++..
T Consensus 76 ~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~--g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 76 GDYEEALRLLQRALALDPYDEEAYRLLMRALAAQ--GRRAEALRVYERYRR 124 (146)
T ss_dssp T-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHT--T-HHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHC--cCHHHHHHHHHHHHH
Confidence 3455888888899999998877777777777654 556788999988743
No 59
>PF13926 DUF4211: Domain of unknown function (DUF4211)
Probab=32.99 E-value=1.1e+02 Score=28.88 Aligned_cols=43 Identities=16% Similarity=0.253 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHH---------HHhhhhHHHHHHHHHHHHHHHHhhhhhH
Q psy5197 386 KQKMTLRFQQTVQSL---------EEEGNAEKHQLIVMHQQRVAARINQHKK 428 (564)
Q Consensus 386 rq~l~qhFQ~~V~sL---------EeE~a~ErqqLvetH~aRVeA~LNdrRR 428 (564)
.+.|-.||+..|+.| .++...++.++--.++.+|+-+|+.+|+
T Consensus 33 ~~~~k~~F~~~ve~lv~~aldp~f~~~l~~~~de~fl~a~~~id~~~~~~~~ 84 (153)
T PF13926_consen 33 TQPLKEHFKIYVEWLVSNALDPDFLQELEDERDEYFLPALKKIDDELQGRKD 84 (153)
T ss_pred hhhHHHHHHHHHHHHHHHHcCHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHh
Confidence 567888888888887 4455557778888888888888777664
No 60
>PF11981 DUF3482: Domain of unknown function (DUF3482); InterPro: IPR021871 This presumed domain is functionally uncharacterised. This domain is found in bacteria and eukaryotes. This domain is typically between 289 to 301 amino acids in length. This domain is found associated with PF01926 from PFAM.
Probab=32.31 E-value=3.3e+02 Score=28.91 Aligned_cols=40 Identities=15% Similarity=0.175 Sum_probs=26.3
Q ss_pred HHHHHccCCCChhHHHHHHHHHHHH-HhhhhhhHHHHHHHH
Q psy5197 434 YIEALNDVSLNTHKVQKCLQKLLRA-LHKDRHHTIAHYKHL 473 (564)
Q Consensus 434 Yl~ALq~~pP~phrVl~aLkrYvRA-e~KDR~HTirHYqHv 473 (564)
|...+-.++.....+.+.|+.-||. |++=+..-++.|+|-
T Consensus 75 ~r~~~~~~~~~~~~~~~~~q~~vRq~E~~~~~~Ll~Ly~f~ 115 (292)
T PF11981_consen 75 YRRKVPSDEDAEAELVQRLQDAVRQREQQCQQALLALYRFR 115 (292)
T ss_pred HHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 3344444444446788888888875 466677778888883
No 61
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=31.54 E-value=8.2e+02 Score=27.81 Aligned_cols=24 Identities=8% Similarity=0.325 Sum_probs=16.2
Q ss_pred HHHHHHhhhhchHHHHHHHhhccc
Q psy5197 353 HREKVTKVMKDWSDLEERYQDMRS 376 (564)
Q Consensus 353 hr~rm~~VmKEW~eAe~q~knL~~ 376 (564)
-+.++.++..+|.++..+.+.+.+
T Consensus 159 ~~~~~~~~~~~~~~~~~~L~~l~~ 182 (563)
T TIGR00634 159 KVKAYRELYQAWLKARQQLKDRQQ 182 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455666667777777777777643
No 62
>cd00109 KU BPTI/Kunitz family of serine protease inhibitors; Structure is a disulfide rich alpha+beta fold. BPTI (bovine pancreatic trypsin inhibitor) is an extensively studied model structure.
Probab=31.33 E-value=26 Score=27.05 Aligned_cols=23 Identities=22% Similarity=0.285 Sum_probs=19.4
Q ss_pred hhhhccCCCCCccccccccccccc
Q psy5197 233 LKRRSARSPQNLCNVFFYFQGFIE 256 (564)
Q Consensus 233 ~~r~~~~~p~~~~~~~~y~~G~~~ 256 (564)
.+||+++.-.+.|..|.|+ |+.+
T Consensus 16 ~~~~~yd~~~~~C~~f~~~-gc~~ 38 (54)
T cd00109 16 IPRYYYDATTKQCEPFTYG-GCGG 38 (54)
T ss_pred ccEEEEeCCCCccceeECC-CccC
Confidence 5789999999999999995 6653
No 63
>KOG3229|consensus
Probab=31.18 E-value=6.2e+02 Score=26.31 Aligned_cols=140 Identities=14% Similarity=0.203 Sum_probs=89.7
Q ss_pred hchHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH-----HHHHHHHhhhhhHHHHHHHHH
Q psy5197 362 KDWSDLEERYQDMRSKSPGVAEDFKQKMTLRFQQTVQSLEEEGNAEKHQLIVMH-----QQRVAARINQHKKDAMNCYIE 436 (564)
Q Consensus 362 KEW~eAe~q~knL~~adPkaae~~rq~l~qhFQ~~V~sLEeE~a~ErqqLvetH-----~aRVeA~LNdrRR~Ale~Yl~ 436 (564)
||---.++|..++.+-.-|+..+.|++--+-=-.++..|=+|..+-|.+.--.| +--|.-.|++ .+|+-----
T Consensus 25 ke~r~ldrqir~iqree~kv~~~iK~aAKknD~~t~~iLAKEiv~srk~v~Rly~sKAqlnSv~M~l~e--qla~~r~~G 102 (227)
T KOG3229|consen 25 KEGRQLDRQIRDIQREEEKVQKSIKQAAKKNDKDTCRILAKEIVQSRKAVKRLYESKAQLNSVSMQLKE--QLATLRVAG 102 (227)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhHHHHHHH--HHHHHHHHh
Confidence 344444555555544444444444444444444556667777777666554333 3334444444 333333333
Q ss_pred HHccCCCChhHHHHHHHHHHHHHhhhhhhHHHHHHHHhhcChhHHhhcc--hhHHHHHHHHHHHhhhhhhhhhhchhhHH
Q psy5197 437 ALNDVSLNTHKVQKCLQKLLRALHKDRHHTIAHYKHLLATNLDFAVKEK--PMTLEHLVDIDHTINQSMTMLQRHPALAV 514 (564)
Q Consensus 437 ALq~~pP~phrVl~aLkrYvRAe~KDR~HTirHYqHv~avdPekAaqmk--~qvltHL~vIeeRmNQSLsLLyr~P~la~ 514 (564)
.|| ..-.|.++...+||+ |+-|+.|+ +.=|+..-+|||.++-++.=+-..-++..
T Consensus 103 ~lq----kStevMk~v~sLvk~-------------------Pel~~TMrelSkEmmKaGIIEEmvdet~esv~d~eemeE 159 (227)
T KOG3229|consen 103 SLQ----KSTEVMKAVNSLVKL-------------------PELAATMRELSKEMMKAGIIEEMVDETMESVEDSEEMEE 159 (227)
T ss_pred hHH----hHHHHHHHHHHHHhh-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHH
Confidence 333 356788888888886 66666666 45689999999999999988888888999
Q ss_pred HhHHHHHHHHHH
Q psy5197 515 KISELMQDYMQA 526 (564)
Q Consensus 515 eI~~~idellq~ 526 (564)
++..+|+..|-+
T Consensus 160 e~deEVdkIL~~ 171 (227)
T KOG3229|consen 160 EADEEVDKILTE 171 (227)
T ss_pred HHHHHHHHHHHH
Confidence 999999998864
No 64
>PF15463 ECM11: Extracellular mutant protein 11
Probab=30.51 E-value=3.4e+02 Score=25.43 Aligned_cols=27 Identities=15% Similarity=0.422 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHhh-hhchHHHH
Q psy5197 342 FKEALQRLEEMHREKVTKV-MKDWSDLE 368 (564)
Q Consensus 342 F~~Ak~~LE~rhr~rm~~V-mKEW~eAe 368 (564)
+...+...+...+...+.+ +.+|+++=
T Consensus 51 l~~~~~~~~~~q~~~fs~ls~~eWe~~G 78 (139)
T PF15463_consen 51 LEELFKLSEQEQEEFFSNLSFDEWEEAG 78 (139)
T ss_pred HHHHHhcChHHHHHHHhcCCHHHHHHHH
Confidence 3333333443333344433 67898763
No 65
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=29.96 E-value=2.2e+02 Score=20.64 Aligned_cols=52 Identities=13% Similarity=0.053 Sum_probs=32.7
Q ss_pred hhhHHHHHHHHHHHccCCCChhHHHHHHHHHHHHHhhhhhhHHHHHHHHhhcCh
Q psy5197 425 QHKKDAMNCYIEALNDVSLNTHKVQKCLQKLLRALHKDRHHTIAHYKHLLATNL 478 (564)
Q Consensus 425 drRR~Ale~Yl~ALq~~pP~phrVl~aLkrYvRAe~KDR~HTirHYqHv~avdP 478 (564)
.+-..|+..|..++...|..+.-....-.-| ..+.+-...+.+|+.++..+|
T Consensus 48 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 48 GKYEEALEDYEKALELDPDNAKAYYNLGLAY--YKLGKYEEALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHHHHHHHhCCCcchhHHHHHHHHH--HHHHhHHHHHHHHHHHHccCC
Confidence 4456888999998888877662222222222 234555667778888877766
No 66
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=29.94 E-value=2.1e+02 Score=22.15 Aligned_cols=57 Identities=9% Similarity=-0.063 Sum_probs=43.3
Q ss_pred HhhhhhHHHHHHHHHHHccCCCChhHHHHHHHHHHHHHhhhhhhHHHHHHHHhhcChhH
Q psy5197 422 RINQHKKDAMNCYIEALNDVSLNTHKVQKCLQKLLRALHKDRHHTIAHYKHLLATNLDF 480 (564)
Q Consensus 422 ~LNdrRR~Ale~Yl~ALq~~pP~phrVl~aLkrYvRAe~KDR~HTirHYqHv~avdPek 480 (564)
+-+++-..|++.+-.+|.-+|-++.-.+ .+..+....++=...++.|++++..+|+.
T Consensus 6 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~--~~a~~~~~~g~~~~A~~~l~~~l~~~p~~ 62 (73)
T PF13371_consen 6 LQQEDYEEALEVLERALELDPDDPELWL--QRARCLFQLGRYEEALEDLERALELSPDD 62 (73)
T ss_pred HhCCCHHHHHHHHHHHHHhCcccchhhH--HHHHHHHHhccHHHHHHHHHHHHHHCCCc
Confidence 4456667899999999999887665443 35666667777788899999999998863
No 67
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=29.33 E-value=6.8e+02 Score=27.33 Aligned_cols=43 Identities=9% Similarity=0.200 Sum_probs=26.9
Q ss_pred hhhhhHHHHHHHHh-hcChhHHhhcchhHHHHHHHHHHHhhhhhhhh
Q psy5197 461 KDRHHTIAHYKHLL-ATNLDFAVKEKPMTLEHLVDIDHTINQSMTML 506 (564)
Q Consensus 461 KDR~HTirHYqHv~-avdPekAaqmk~qvltHL~vIeeRmNQSLsLL 506 (564)
.++.+.|.++..-| ..+|.+.-.-+ -++|..+..|+++++.-.
T Consensus 330 ~~~~~~L~~l~~rL~~lsP~~~L~r~---~qrL~~L~~rL~~a~~~~ 373 (438)
T PRK00286 330 RLAKQRLERLSQRLQQQNPQRRIERA---QQRLEQLEQRLRRAMRRQ 373 (438)
T ss_pred HHHHHHHHHHHHHHhhcCHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 34556666665544 67887654433 355667788888887633
No 68
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=29.19 E-value=1.6e+02 Score=22.59 Aligned_cols=55 Identities=18% Similarity=0.091 Sum_probs=39.7
Q ss_pred hhhhhHHHHHHHHHHHccCCCChhHHHHHHHHHHHHHhhhhhhHHHHHHHHhhcChh
Q psy5197 423 INQHKKDAMNCYIEALNDVSLNTHKVQKCLQKLLRALHKDRHHTIAHYKHLLATNLD 479 (564)
Q Consensus 423 LNdrRR~Ale~Yl~ALq~~pP~phrVl~aLkrYvRAe~KDR~HTirHYqHv~avdPe 479 (564)
-+.+-..|++.|-.+++.+|=++.-.+..-+-|++.-+-| -....++.++..+|.
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~--~A~~~l~~~~~~~~~ 57 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYD--EAEELLERLLKQDPD 57 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HH--HHHHHHHCCHGGGTT
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHHCcC
Confidence 3455568889999999988888887777777777654444 366677777777776
No 69
>PF11740 KfrA_N: Plasmid replication region DNA-binding N-term; InterPro: IPR021104 The KfrA family of protiens are encoded on plasmids, generally in or near gene clusters invloved in stable inheritance functions. These proteins are thought to form an all-helical structure, consisting of an N-terminal helix-turn-helix DNA binding domain and an extended coiled-coil tail. The best-characterised KfrA protein, encoded on the broad host-range Plasmid RK2, is a site-specific DNA-binding protein whose operator overlaps its own promoter. The DNA-binding domain is essential for function, while the coiled-coil domain is probably responsible for formation of multimers, and may provide an example of a bridge to host structures required for plasmid partitioning []. This entry represents the N-terminal DNA-binding domain.
Probab=28.97 E-value=3.9e+02 Score=23.52 Aligned_cols=70 Identities=17% Similarity=0.236 Sum_probs=38.3
Q ss_pred HHHHHHHhhhhchHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHh
Q psy5197 352 MHREKVTKVMKDWSDLEERYQDMRSKSPGVAEDFKQKMTLRFQQTVQSLEEEGNAEKHQLIVMHQQRVAARI 423 (564)
Q Consensus 352 rhr~rm~~VmKEW~eAe~q~knL~~adPkaae~~rq~l~qhFQ~~V~sLEeE~a~ErqqLvetH~aRVeA~L 423 (564)
--...|.+++|+|.+...... ....|.-=+.+-..+..-+..+.+...+++...-.+..+.+.+++.++.
T Consensus 32 GS~~ti~~~l~~w~~~~~~~~--~~~~~~lP~~l~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~ 101 (120)
T PF11740_consen 32 GSMSTISKHLKEWREEREAQV--SEAAPDLPEALQDALAELMARLWEAAQEEAEEELEAARAELEQERAAAE 101 (120)
T ss_pred CCHHHHHHHHHHHHHhhhccc--cccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678899999986554433 1111111123455555555566666666555555555555555555543
No 70
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=28.94 E-value=1.3e+03 Score=29.14 Aligned_cols=60 Identities=18% Similarity=0.349 Sum_probs=34.5
Q ss_pred HHHhhhhhHHHHHHHHHHHccCCCChhHHH------HHHHHHHHHHhhhhhhHHHHHHHHhhcChhH
Q psy5197 420 AARINQHKKDAMNCYIEALNDVSLNTHKVQ------KCLQKLLRALHKDRHHTIAHYKHLLATNLDF 480 (564)
Q Consensus 420 eA~LNdrRR~Ale~Yl~ALq~~pP~phrVl------~aLkrYvRAe~KDR~HTirHYqHv~avdPek 480 (564)
.+-+..++..-=.-|.+.|.+.=+.+.+|. ..|.+-|+.. +.+++-+..|+-.+...-.+
T Consensus 745 ~~~~~~~~~~le~~~~~eL~~~GvD~~~I~~l~~~i~~L~~~l~~i-e~~r~~V~eY~~~~~~~~~~ 810 (1201)
T PF12128_consen 745 KQEAKEQLKELEQQYNQELAGKGVDPERIQQLKQEIEQLEKELKRI-EERRAEVIEYEDWLQEEWDK 810 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHh
Confidence 333444444444567788887777776653 2233333332 35667788888877765443
No 71
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=28.82 E-value=8.1e+02 Score=29.42 Aligned_cols=106 Identities=15% Similarity=0.238 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhchHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q psy5197 343 KEALQRLEEMHREKVTKVMKDWSDLEERYQDMRSKSPGVAEDFKQKMTLRFQQTVQSLEEEGNAEKHQLIVMHQQRVAAR 422 (564)
Q Consensus 343 ~~Ak~~LE~rhr~rm~~VmKEW~eAe~q~knL~~adPkaae~~rq~l~qhFQ~~V~sLEeE~a~ErqqLvetH~aRVeA~ 422 (564)
.+|++-+... ..++++++.+-++...++... -..++..++. .+.-+.-++...++...+|.++.+.=......+
T Consensus 500 ~~A~~~~~~~-~~~~~~li~~L~~~~~~~e~~----~~~~~~~~~e-~~~~~~~l~~~~~~l~~~~~~~~~~a~~ea~~~ 573 (771)
T TIGR01069 500 EQAKTFYGEF-KEEINVLIEKLSALEKELEQK----NEHLEKLLKE-QEKLKKELEQEMEELKERERNKKLELEKEAQEA 573 (771)
T ss_pred HHHHHHHHhh-HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555443 335666666555544444433 1111111222 222333344444555556777777767777777
Q ss_pred hhhhhHHHHHHHHHHHccCCCChhHHHHHHHHH
Q psy5197 423 INQHKKDAMNCYIEALNDVSLNTHKVQKCLQKL 455 (564)
Q Consensus 423 LNdrRR~Ale~Yl~ALq~~pP~phrVl~aLkrY 455 (564)
|.+-|+ .+++.+..|.....+.+.+.++.+++
T Consensus 574 ~~~a~~-~~~~~i~~lk~~~~~~~~~~~~~~~~ 605 (771)
T TIGR01069 574 LKALKK-EVESIIRELKEKKIHKAKEIKSIEDL 605 (771)
T ss_pred HHHHHH-HHHHHHHHHHhccccHHHHHHHHHHH
Confidence 777665 45677777776656666666665554
No 72
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=28.76 E-value=7e+02 Score=29.94 Aligned_cols=90 Identities=18% Similarity=0.298 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhchHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q psy5197 343 KEALQRLEEMHREKVTKVMKDWSDLEERYQDMRSKSPGVAEDFKQKMTLRFQQTVQSLEEEGNAEKHQLIVMHQQRVAAR 422 (564)
Q Consensus 343 ~~Ak~~LE~rhr~rm~~VmKEW~eAe~q~knL~~adPkaae~~rq~l~qhFQ~~V~sLEeE~a~ErqqLvetH~aRVeA~ 422 (564)
.+|++-|..... ++++++.+-++...++... -..++..++. .+.-+.-++...++...+|..+.+.=.+....+
T Consensus 505 ~~A~~~~~~~~~-~~~~li~~l~~~~~~~e~~----~~~~~~~~~e-~~~~~~~l~~~~~~l~~~~~~~~~~~~~~a~~~ 578 (782)
T PRK00409 505 EEAKKLIGEDKE-KLNELIASLEELERELEQK----AEEAEALLKE-AEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQA 578 (782)
T ss_pred HHHHHHHhhhhh-HHHHHHHHHHHHHHHHHHH----HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777765443 7788887777666555544 1111122222 223333444445555566667777767777777
Q ss_pred hhhhhHHHHHHHHHHHc
Q psy5197 423 INQHKKDAMNCYIEALN 439 (564)
Q Consensus 423 LNdrRR~Ale~Yl~ALq 439 (564)
|.+-|+. .++.+..|.
T Consensus 579 l~~a~~~-~~~~i~~lk 594 (782)
T PRK00409 579 IKEAKKE-ADEIIKELR 594 (782)
T ss_pred HHHHHHH-HHHHHHHHH
Confidence 7776653 344455554
No 73
>KOG0550|consensus
Probab=28.71 E-value=5.5e+02 Score=29.36 Aligned_cols=140 Identities=19% Similarity=0.153 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHH-----HHhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHccCCCChhHHHHHHHHHHHHHhhhh
Q psy5197 389 MTLRFQQTVQSL-----EEEGNAEKHQLIVMHQQRVAARINQHKKDAMNCYIEALNDVSLNTHKVQKCLQKLLRALHKDR 463 (564)
Q Consensus 389 l~qhFQ~~V~sL-----EeE~a~ErqqLvetH~aRVeA~LNdrRR~Ale~Yl~ALq~~pP~phrVl~aLkrYvRAe~KDR 463 (564)
-|.|||+-|..= -..+...=.+|..+-..==.+-=|-+=|.|-|+|..||+.||-+..-+-++. +=||.-.-|
T Consensus 222 a~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY--~nra~v~~r 299 (486)
T KOG0550|consen 222 AINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLY--GNRALVNIR 299 (486)
T ss_pred HHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHH--HHhHhhhcc
Confidence 467777655310 1112223345555555555666777889999999999999998766554443 333333222
Q ss_pred ----hhHHHHHHHHhhcChh--HHhhcchhHHHHHHHHHH---HhhhhhhhhhhchhhHHHhHHHHHHHHHHhhccC
Q psy5197 464 ----HHTIAHYKHLLATNLD--FAVKEKPMTLEHLVDIDH---TINQSMTMLQRHPALAVKISELMQDYMQALRSKD 531 (564)
Q Consensus 464 ----~HTirHYqHv~avdPe--kAaqmk~qvltHL~vIee---RmNQSLsLLyr~P~la~eI~~~idellq~~Rs~~ 531 (564)
.-.|.--.-++..|+. ||---+-+-..=|-..|+ =.|+.+.+=.. +.+-+.++....+|=++.|-++
T Consensus 300 Lgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s-~e~r~~l~~A~~aLkkSkRkd~ 375 (486)
T KOG0550|consen 300 LGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD-CEIRRTLREAQLALKKSKRKDW 375 (486)
T ss_pred cCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cchHHHHHHHHHHHHHhhhhhH
Confidence 2233334445555555 333333322222333333 35677765555 8888888888888887777555
No 74
>cd06897 PX_SNARE The phosphoinositide binding Phox Homology domain of SNARE proteins from fungi. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. This subfamily is composed of fungal proteins similar to Saccharomyces cerevisiae Vam7p. They contain an N-terminal PX domain and a C-terminal SNARE domain. The SNARE (Soluble NSF attachment protein receptor) family of proteins are integral membrane proteins that serve as key factors for vesicular trafficking. Vam7p is anchored at the vacuolar membrane through the specific interaction of its PX domain with phosphatidylinositol-3-phosphate (PI3P) present in bilayers. It plays an essential role in vacuole fusion. The PX domain is involved in targeting of proteins to PI-enriched membranes, and may also be involved in protein-protein interaction.
Probab=28.65 E-value=53 Score=28.67 Aligned_cols=18 Identities=11% Similarity=0.381 Sum_probs=16.1
Q ss_pred hhhHHHHHHHHHHHccCC
Q psy5197 425 QHKKDAMNCYIEALNDVS 442 (564)
Q Consensus 425 drRR~Ale~Yl~ALq~~p 442 (564)
+.||.+|+.||..|-..|
T Consensus 74 e~Rr~~Le~yL~~l~~~~ 91 (108)
T cd06897 74 EERRVGLEAFLRALLNDE 91 (108)
T ss_pred HHHHHHHHHHHHHHHcCC
Confidence 468999999999999887
No 75
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=27.79 E-value=2.4e+02 Score=25.92 Aligned_cols=26 Identities=19% Similarity=0.188 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHH
Q psy5197 389 MTLRFQQTVQSLEEEGNAEKHQLIVM 414 (564)
Q Consensus 389 l~qhFQ~~V~sLEeE~a~ErqqLvet 414 (564)
+.+.||...+.+.++...+++.+...
T Consensus 88 ~~~~l~~~~~~~~~~l~~~~~~~~~~ 113 (158)
T PF03938_consen 88 KEQELQQFQQQAQQQLQQEEQELLQP 113 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444433
No 76
>COG1390 NtpE Archaeal/vacuolar-type H+-ATPase subunit E [Energy production and conversion]
Probab=27.77 E-value=3.6e+02 Score=27.01 Aligned_cols=43 Identities=14% Similarity=0.329 Sum_probs=31.1
Q ss_pred HHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q psy5197 365 SDLEERYQDMRSKSPGVAEDFKQKMTLRFQQTVQSLEEEGNAEKHQLIVM 414 (564)
Q Consensus 365 ~eAe~q~knL~~adPkaae~~rq~l~qhFQ~~V~sLEeE~a~ErqqLvet 414 (564)
.+|+..+..... .-+....+.+-......+.|+...+|++...
T Consensus 24 ~eA~~eae~i~~-------ea~~~~~~~~~~~~~~~~~ea~~~~~~iis~ 66 (194)
T COG1390 24 EEAREEAEKIKE-------EAKREAEEAIEEILRKAEKEAERERQRIISS 66 (194)
T ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566655522 1255677777788889999999999999888
No 77
>KOG0517|consensus
Probab=27.57 E-value=1.1e+03 Score=31.94 Aligned_cols=130 Identities=20% Similarity=0.262 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHH--H---HHHHHHHhhhhhHHHHHHHHHHHccCCCChhHHHHHHHHHHHHHhhh
Q psy5197 388 KMTLRFQQTVQSLEEEGNAEKHQLIVM--H---QQRVAARINQHKKDAMNCYIEALNDVSLNTHKVQKCLQKLLRALHKD 462 (564)
Q Consensus 388 ~l~qhFQ~~V~sLEeE~a~ErqqLvet--H---~aRVeA~LNdrRR~Ale~Yl~ALq~~pP~phrVl~aLkrYvRAe~KD 462 (564)
.|.+||+.+. +|-+-=-+|-||||.- | ++-|+|.+ +|..|++.=+.|-- .| +++|-..-......
T Consensus 415 qLA~RFdrKA-amREtwL~enqrlvsqdnfg~~LaaVEAa~--KKheAIetDI~Aye------eR-vqal~ava~eL~~E 484 (2473)
T KOG0517|consen 415 QLARRFDRKA-AMRETWLKENQRLVSQDNFGYDLAAVEAAL--KKHEAIETDILAYE------ER-VQALVAVADELEAE 484 (2473)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHhccccCccHHHHHHHH--HHhhhhhhhHHHHH------HH-HHHHHHHHHHHHHh
Confidence 3888998886 5666677788899874 3 78888887 45677776665532 23 56777777777777
Q ss_pred hhhHHHHHHHHhhcChhHHhhcchhHHHHHHHHHHHhhhhhhhhhhchhhHHHhHHHHHHHHHHhhccCC
Q psy5197 463 RHHTIAHYKHLLATNLDFAVKEKPMTLEHLVDIDHTINQSMTMLQRHPALAVKISELMQDYMQALRSKDE 532 (564)
Q Consensus 463 R~HTirHYqHv~avdPekAaqmk~qvltHL~vIeeRmNQSLsLLyr~P~la~eI~~~idellq~~Rs~~d 532 (564)
+.|-++.-.- --+.-.+.=.+++++|.-=-.|+-++|.|+.-+-++. .+.+.|+|+=+.++|.+-
T Consensus 485 ~YHd~~rV~~----r~~~V~~~W~~Ll~lL~arR~rL~~~~~Lqklfqem~-~~~d~meElk~~l~S~d~ 549 (2473)
T KOG0517|consen 485 NYHDIKRVAA----RKDNVLRLWTYLLELLEARRQRLEQMLALQKLFQEML-YTSDWMEELKQQLLSRDV 549 (2473)
T ss_pred ccchHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhHHH
Confidence 8887754210 0111122335667888877777777777766555543 455677777666776663
No 78
>smart00131 KU BPTI/Kunitz family of serine protease inhibitors. Serine protease inhibitors. One member of the family is encoded by an alternatively-spliced form of Alzheimer's amyloid beta-protein.
Probab=27.49 E-value=33 Score=26.42 Aligned_cols=22 Identities=23% Similarity=0.289 Sum_probs=18.7
Q ss_pred hhhhccCCCCCcccccccccccc
Q psy5197 233 LKRRSARSPQNLCNVFFYFQGFI 255 (564)
Q Consensus 233 ~~r~~~~~p~~~~~~~~y~~G~~ 255 (564)
..||+++.-.++|..|.|. |+.
T Consensus 16 ~~~w~yd~~~~~C~~f~~~-gc~ 37 (53)
T smart00131 16 IPRYYYDPETGTCEPFTYG-GCG 37 (53)
T ss_pred eeEEEEeCCCCccceeECC-Ccc
Confidence 5789999999999999994 664
No 79
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=27.25 E-value=3.5e+02 Score=22.16 Aligned_cols=58 Identities=7% Similarity=-0.041 Sum_probs=31.7
Q ss_pred HHHhhhh-hHHHHHHHHHHHccCCCChhH---HHHHHHHHHHHHhhhhhhHHHHHHHHhhcChh
Q psy5197 420 AARINQH-KKDAMNCYIEALNDVSLNTHK---VQKCLQKLLRALHKDRHHTIAHYKHLLATNLD 479 (564)
Q Consensus 420 eA~LNdr-RR~Ale~Yl~ALq~~pP~phr---Vl~aLkrYvRAe~KDR~HTirHYqHv~avdPe 479 (564)
...++.. ...|++.|..+++..|.++.. -+..-.-|.+..+ =.-.+..|+-++..+|.
T Consensus 10 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~A~~~~~~~~~~~p~ 71 (119)
T TIGR02795 10 LLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGK--YADAAKAFLAVVKKYPK 71 (119)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhcc--HHHHHHHHHHHHHHCCC
Confidence 3344433 346888888888877654321 1111222222222 23378888888887765
No 80
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=27.01 E-value=6.9e+02 Score=25.49 Aligned_cols=116 Identities=10% Similarity=0.031 Sum_probs=54.2
Q ss_pred hhchHHHHHHHhhcccCCCCchHH----HHHHH------HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHh-hhhhHH
Q psy5197 361 MKDWSDLEERYQDMRSKSPGVAED----FKQKM------TLRFQQTVQSLEEEGNAEKHQLIVMHQQRVAARI-NQHKKD 429 (564)
Q Consensus 361 mKEW~eAe~q~knL~~adPkaae~----~rq~l------~qhFQ~~V~sLEeE~a~ErqqLvetH~aRVeA~L-NdrRR~ 429 (564)
.++|.+|...++.+.+.+|..... +.-.+ ..++..-++.+++=.... ...+..+.......+ +.+-..
T Consensus 154 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~ 232 (389)
T PRK11788 154 EKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAA 232 (389)
T ss_pred hchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHH
Confidence 567888888877776655543110 00000 012233333333211111 112233333322222 234456
Q ss_pred HHHHHHHHHccCCCChhHHHHHH-HHHHHHHhhhhhhHHHHHHHHhhcChh
Q psy5197 430 AMNCYIEALNDVSLNTHKVQKCL-QKLLRALHKDRHHTIAHYKHLLATNLD 479 (564)
Q Consensus 430 Ale~Yl~ALq~~pP~phrVl~aL-krYvRAe~KDR~HTirHYqHv~avdPe 479 (564)
|++-|..++..+|+....++..| .-|.+ ..+--..+..|+.++..+|.
T Consensus 233 A~~~~~~~~~~~p~~~~~~~~~l~~~~~~--~g~~~~A~~~l~~~~~~~p~ 281 (389)
T PRK11788 233 AIEALERVEEQDPEYLSEVLPKLMECYQA--LGDEAEGLEFLRRALEEYPG 281 (389)
T ss_pred HHHHHHHHHHHChhhHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCCC
Confidence 77777777776665543333333 23332 33444456677777766664
No 81
>PF15556 Zwint: ZW10 interactor
Probab=26.45 E-value=4.3e+02 Score=27.51 Aligned_cols=94 Identities=24% Similarity=0.349 Sum_probs=48.8
Q ss_pred HHHHHHHhhhhchHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhhhHHHH
Q psy5197 352 MHREKVTKVMKDWSDLEERYQDMRSKSPGVAEDFKQKMTLRFQQTVQSLEEEGNAEKHQLIVMHQQRVAARINQHKKDAM 431 (564)
Q Consensus 352 rhr~rm~~VmKEW~eAe~q~knL~~adPkaae~~rq~l~qhFQ~~V~sLEeE~a~ErqqLvetH~aRVeA~LNdrRR~Al 431 (564)
.-|.++...+..|.|+-.-|+.- -+..+-+|++-.=. -+|+..-+.+|-+.+ --|.-+++.||
T Consensus 56 tsRqkai~aKeQWKeLKAtYqeh-------VEaIk~alt~aL~q-----~eEaqrK~~qLqeA~-----eqlqaKKqva~ 118 (252)
T PF15556_consen 56 TSRQKAIEAKEQWKELKATYQEH-------VEAIKSALTQALPQ-----VEEAQRKRTQLQEAL-----EQLQAKKQVAM 118 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHH-----HHHHHHHHHHH
Confidence 34666777778888887777654 23345555552211 133444444444332 23445666677
Q ss_pred HHHHHHHccCCCChhHHHHHHHHHHHHHhhhh
Q psy5197 432 NCYIEALNDVSLNTHKVQKCLQKLLRALHKDR 463 (564)
Q Consensus 432 e~Yl~ALq~~pP~phrVl~aLkrYvRAe~KDR 463 (564)
+....|-..--.+-.+.|+.|-+- -||-|+|
T Consensus 119 eK~r~AQkqwqlqQeK~LQ~Lae~-sAEvrer 149 (252)
T PF15556_consen 119 EKLRAAQKQWQLQQEKHLQHLAEV-SAEVRER 149 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 666665433333445556666543 3444444
No 82
>cd06880 PX_SNX22 The phosphoinositide binding Phox Homology domain of Sorting Nexin 22. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX22 may be involved in recruiting other proteins to the membrane via protein-protein and protein-ligand interaction. The biological function of SNX22 is not yet known.
Probab=26.37 E-value=65 Score=28.86 Aligned_cols=19 Identities=11% Similarity=0.517 Sum_probs=16.6
Q ss_pred hhhHHHHHHHHHHHccCCC
Q psy5197 425 QHKKDAMNCYIEALNDVSL 443 (564)
Q Consensus 425 drRR~Ale~Yl~ALq~~pP 443 (564)
+.||.+|+.||..|-..|.
T Consensus 72 e~Rr~~Le~yL~~ll~~~~ 90 (110)
T cd06880 72 EQRRQGLEAYLQGLLKINE 90 (110)
T ss_pred HHHHHHHHHHHHHHHcCcc
Confidence 5688899999999998876
No 83
>PLN02867 Probable galacturonosyltransferase
Probab=26.34 E-value=1.2e+02 Score=35.01 Aligned_cols=57 Identities=12% Similarity=0.125 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHH-HHHHHHHHHHH------HhhhhhHHHHHHHHHHHc-cCCCChh
Q psy5197 387 QKMTLRFQQTVQSLEEEGNAEKHQ-LIVMHQQRVAA------RINQHKKDAMNCYIEALN-DVSLNTH 446 (564)
Q Consensus 387 q~l~qhFQ~~V~sLEeE~a~Erqq-LvetH~aRVeA------~LNdrRR~Ale~Yl~ALq-~~pP~ph 446 (564)
.+++.+..+|++++|+++.+.|+| ..-.|++ +.+ .|.= |++.|-|..+.. ...|+++
T Consensus 137 ~~~~~kl~am~~~~e~~~~~~~~~~~~~~~la-a~t~PK~lHCL~m--rLt~ey~~~~~~~~~~~~~~ 201 (535)
T PLN02867 137 KAFAFRTKAMLLKMERKVQSARQRESIYWHLA-SHGIPKSLHCLCL--KLAEEYAVNAMARSRLPPPE 201 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhcCCCccccch--hhHHHHHhCchhhccCCChh
Confidence 357788999999999999997766 3333433 221 1222 677776666533 3344443
No 84
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=25.91 E-value=1e+03 Score=29.30 Aligned_cols=109 Identities=12% Similarity=0.131 Sum_probs=63.2
Q ss_pred hhhhchHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q psy5197 359 KVMKDWSDLEERYQDMRSKSPGVAEDFKQKMTLRFQQTVQSLEEEGNAEKHQLIVMHQQRVAARINQHKKDAMNCYIEAL 438 (564)
Q Consensus 359 ~VmKEW~eAe~q~knL~~adPkaae~~rq~l~qhFQ~~V~sLEeE~a~ErqqLvetH~aRVeA~LNdrRR~Ale~Yl~AL 438 (564)
--+.+=++|...++.+.+.+|..... +.....+.-..-.-|+. .-++|+.+..+ +-..|+..|.+++
T Consensus 73 l~~g~~~~A~~~l~~l~~~~P~~~~~---------~~~~~~~~~~~~~~~~~---l~~A~ll~~~g-~~~eA~~~~~~~l 139 (1157)
T PRK11447 73 LRQGDSDGAQKLLDRLSQLAPDSNAY---------RSSRTTMLLSTPEGRQA---LQQARLLATTG-RTEEALASYDKLF 139 (1157)
T ss_pred HhCCCHHHHHHHHHHHHhhCCCChHH---------HHHHHHHHhcCCchhhH---HHHHHHHHhCC-CHHHHHHHHHHHc
Confidence 33455667777777777777765321 11111111111111222 23455554433 4578999999999
Q ss_pred ccCCCChhHHHHHHHHHHHHHhhhhhhHHHHHHHHhhcChhHH
Q psy5197 439 NDVSLNTHKVQKCLQKLLRALHKDRHHTIAHYKHLLATNLDFA 481 (564)
Q Consensus 439 q~~pP~phrVl~aLkrYvRAe~KDR~HTirHYqHv~avdPekA 481 (564)
+.+||++.-.+..++... ....++...++.|+.++..+|..+
T Consensus 140 ~~~p~~~~la~~y~~~~~-~~~g~~~~A~~~L~~ll~~~P~~~ 181 (1157)
T PRK11447 140 NGAPPELDLAVEYWRLVA-KLPAQRPEAINQLQRLNADYPGNT 181 (1157)
T ss_pred cCCCCChHHHHHHHHHHh-hCCccHHHHHHHHHHHHHhCCCCH
Confidence 999998753332222222 124677789999999999999864
No 85
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=25.86 E-value=7.5e+02 Score=25.54 Aligned_cols=92 Identities=20% Similarity=0.195 Sum_probs=50.1
Q ss_pred HHHHHHHHHHccCCCChhHHHHHHHHHHHHH---hhhhhhHHHHHHHHhhcChhHHhhcchhHHHHHHHHHHHhhhhhhh
Q psy5197 429 DAMNCYIEALNDVSLNTHKVQKCLQKLLRAL---HKDRHHTIAHYKHLLATNLDFAVKEKPMTLEHLVDIDHTINQSMTM 505 (564)
Q Consensus 429 ~Ale~Yl~ALq~~pP~phrVl~aLkrYvRAe---~KDR~HTirHYqHv~avdPekAaqmk~qvltHL~vIeeRmNQSLsL 505 (564)
..|..|+..+++.--=-..=.++.+.|..++ +|-|.. +.-. .....|+|+.+++..| ...+.|+.+.=.
T Consensus 109 e~l~eYiRli~SVK~~f~~R~k~~~~~~~~~~~l~kKr~~-~~Kl--~~~~~~dK~~~a~~Ev----~e~e~k~~~a~~- 180 (234)
T cd07665 109 ELLADYIRLLSAVRGAFDQRMKTWQRWQDAQAMLQKKREA-EARL--LWANKPDKLQQAKDEI----AEWESRVTQYER- 180 (234)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH--HhcCCchHHHHHHHHH----HHHHHHHHHHHH-
Confidence 4566777777765211122233444444443 232221 1111 1234577888887776 557777776655
Q ss_pred hhhchhhHHHhHHHHHHHHHHhhccC
Q psy5197 506 LQRHPALAVKISELMQDYMQALRSKD 531 (564)
Q Consensus 506 Lyr~P~la~eI~~~idellq~~Rs~~ 531 (564)
++-.|..-|+.+|.- ++..|..+
T Consensus 181 --~fe~is~~ik~El~r-Fe~er~~D 203 (234)
T cd07665 181 --DFERISATVRKEVIR-FEKEKSKD 203 (234)
T ss_pred --HHHHHHHHHHHHHHH-HHHHHHHH
Confidence 677788888888844 45555443
No 86
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=25.50 E-value=1e+03 Score=26.88 Aligned_cols=52 Identities=17% Similarity=0.132 Sum_probs=26.5
Q ss_pred hHHHHHHHHHHHccCCCChhHHHHHHHHHHHHHhhhhhhHHHHHHHHhhcChhH
Q psy5197 427 KKDAMNCYIEALNDVSLNTHKVQKCLQKLLRALHKDRHHTIAHYKHLLATNLDF 480 (564)
Q Consensus 427 RR~Ale~Yl~ALq~~pP~phrVl~aLkrYvRAe~KDR~HTirHYqHv~avdPek 480 (564)
-..|+..|..||+.+|-++.-....-. +.....+---.+..|+.++..+|.-
T Consensus 381 ~~eA~~~~~~al~~~p~~~~~~~~lg~--~~~~~g~~~~A~~~~~kal~l~P~~ 432 (615)
T TIGR00990 381 PDKAEEDFDKALKLNSEDPDIYYHRAQ--LHFIKGEFAQAGKDYQKSIDLDPDF 432 (615)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHH--HHHHcCCHHHHHHHHHHHHHcCccC
Confidence 346666666666666555532222111 2222333444566666666666653
No 87
>KOG3444|consensus
Probab=25.04 E-value=47 Score=31.09 Aligned_cols=26 Identities=19% Similarity=0.078 Sum_probs=22.7
Q ss_pred cChhHHhhcchhHHHHHHHHHHHhhh
Q psy5197 476 TNLDFAVKEKPMTLEHLVDIDHTINQ 501 (564)
Q Consensus 476 vdPekAaqmk~qvltHL~vIeeRmNQ 501 (564)
.+-|++-..+-||..-|.||||++|-
T Consensus 21 t~~e~~L~~~y~v~~sLDVieekvn~ 46 (121)
T KOG3444|consen 21 TPKEKELKLHYQVHLSLDVIEEKVND 46 (121)
T ss_pred CcHHHHHHhHhhhhhhHHHHHHHhcC
Confidence 45678888889999999999999987
No 88
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=24.84 E-value=2.3e+02 Score=25.61 Aligned_cols=70 Identities=14% Similarity=0.205 Sum_probs=44.1
Q ss_pred hhHHHHHHHHHHHc-cCCCChhHHHHHHHHHHHHHhhhhhhHHHHHHHHhhcChhHHhhcchhHHHHHHHHHHHhhhhhh
Q psy5197 426 HKKDAMNCYIEALN-DVSLNTHKVQKCLQKLLRALHKDRHHTIAHYKHLLATNLDFAVKEKPMTLEHLVDIDHTINQSMT 504 (564)
Q Consensus 426 rRR~Ale~Yl~ALq-~~pP~phrVl~aLkrYvRAe~KDR~HTirHYqHv~avdPekAaqmk~qvltHL~vIeeRmNQSLs 504 (564)
+-+.-+.+.+.--+ ..+|.+.+||..|++.++.. .+..+.+++-++.. ++.|+
T Consensus 27 ~~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~-----~a~~~l~~iG~~~f----------L~klr----------- 80 (98)
T PF14726_consen 27 KERLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSP-----YAAQILRDIGAVRF----------LSKLR----------- 80 (98)
T ss_pred cHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCc-----HHHHHHHHccHHHH----------HHHHH-----------
Confidence 34555666666666 45788999999999987643 23344444443322 33333
Q ss_pred hhhhchhhHHHhHHHHHHHHHH
Q psy5197 505 MLQRHPALAVKISELMQDYMQA 526 (564)
Q Consensus 505 LLyr~P~la~eI~~~idellq~ 526 (564)
|.+...++..|+++|..
T Consensus 81 -----~~~~~~~~~~id~il~~ 97 (98)
T PF14726_consen 81 -----PNVEPNLQAEIDEILDQ 97 (98)
T ss_pred -----hcCCHHHHHHHHHHHhc
Confidence 66777778888888764
No 89
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=24.80 E-value=1.1e+03 Score=27.06 Aligned_cols=168 Identities=12% Similarity=0.178 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH------H
Q psy5197 340 HAFKEALQRLEEMHREKVTKVMKDWSDLEERYQDMRSKSPGVAEDFKQKMTLRFQQTVQSLEEEGNAEKHQLI------V 413 (564)
Q Consensus 340 ~~F~~Ak~~LE~rhr~rm~~VmKEW~eAe~q~knL~~adPkaae~~rq~l~qhFQ~~V~sLEeE~a~ErqqLv------e 413 (564)
..|.+-+..-++--..++..|-..--+||....-.+-.- -+..+..-++++..+|++..+-++.|- +
T Consensus 60 ~~fe~w~~~w~~i~~~~~~~ie~~L~~ae~~~~~~rf~k-------a~~~i~~~~~~l~~~e~~i~~i~~~l~~L~~~e~ 132 (560)
T PF06160_consen 60 EKFEEWRQKWDEIVTKQLPEIEEQLFEAEEYADKYRFKK-------AKQAIKEIEEQLDEIEEDIKEILDELDELLESEE 132 (560)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcccHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457777766666666666666666666666655443211 124667788888888888887776653 4
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHccCCCChhHHHHHHHHHHHHHhhhhhhHHHHHHHHhh-cChhHHhhcchhHHHHH
Q psy5197 414 MHQQRVAARINQHKKDAMNCYIEALNDVSLNTHKVQKCLQKLLRALHKDRHHTIAHYKHLLA-TNLDFAVKEKPMTLEHL 492 (564)
Q Consensus 414 tH~aRVeA~LNdrRR~Ale~Yl~ALq~~pP~phrVl~aLkrYvRAe~KDR~HTirHYqHv~a-vdPekAaqmk~qvltHL 492 (564)
.|..+|.++...-| ..-..+++-=-.=-|-...+.+.|... .. ....|.-+-. .|+.+|..+=..+-.++
T Consensus 133 ~nr~~i~~l~~~y~-~lrk~ll~~~~~~G~a~~~Le~~L~~i----e~----~F~~f~~lt~~GD~~~A~eil~~l~~~~ 203 (560)
T PF06160_consen 133 KNREEIEELKEKYR-ELRKELLAHSFSYGPAIEELEKQLENI----EE----EFSEFEELTENGDYLEAREILEKLKEET 203 (560)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHhhhhhchhHHHHHHHHHHH----HH----HHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 56667766554322 222222221112123333344433332 22 2455666655 59999998766665555
Q ss_pred HHHHHHhhhhhhhhhhchhhHHHhHHHHHHHHHHhhcc
Q psy5197 493 VDIDHTINQSMTMLQRHPALAVKISELMQDYMQALRSK 530 (564)
Q Consensus 493 ~vIeeRmNQSLsLLyr~P~la~eI~~~idellq~~Rs~ 530 (564)
..++..| .+.|.|-.+++..+.+-|..+++.
T Consensus 204 ~~l~~~~-------e~IP~l~~~l~~~~P~ql~eL~~g 234 (560)
T PF06160_consen 204 DELEEIM-------EDIPKLYKELQKEFPDQLEELKEG 234 (560)
T ss_pred HHHHHHH-------HHhHHHHHHHHHHhHHHHHHHHHH
Confidence 5555554 566777777666666666655543
No 90
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=24.72 E-value=1e+03 Score=26.63 Aligned_cols=150 Identities=11% Similarity=0.123 Sum_probs=87.9
Q ss_pred CCCCCCchhhHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHhhcccCCCCchHHHHHHHHHHH-HHHHHHHHHhhhhHH
Q psy5197 330 FTHFEPKDEHHAFKEALQRLEEMHREKVTKVMKDWSDLEERYQDMRSKSPGVAEDFKQKMTLRF-QQTVQSLEEEGNAEK 408 (564)
Q Consensus 330 fe~~~~~~EH~~F~~Ak~~LE~rhr~rm~~VmKEW~eAe~q~knL~~adPkaae~~rq~l~qhF-Q~~V~sLEeE~a~Er 408 (564)
|....|+.|++. .|+++| --|-++-|||+-|=+-+..|-+.+|.. .+- -|.+| =+.-+++.
T Consensus 130 f~~L~de~efa~--~AlqqL-----l~IYQ~treW~KAId~A~~L~k~~~q~---~~~-eIAqfyCELAq~~~------- 191 (389)
T COG2956 130 FNQLVDEGEFAE--GALQQL-----LNIYQATREWEKAIDVAERLVKLGGQT---YRV-EIAQFYCELAQQAL------- 191 (389)
T ss_pred HHHHhcchhhhH--HHHHHH-----HHHHHHhhHHHHHHHHHHHHHHcCCcc---chh-HHHHHHHHHHHHHh-------
Confidence 444445555553 566665 345566799999999999888877543 233 34444 33332222
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHccCCCChhHHHHHHHHHHHHHhhhhhhHHHHHHHHhhcChhHH---hhcc
Q psy5197 409 HQLIVMHQQRVAARINQHKKDAMNCYIEALNDVSLNTHKVQKCLQKLLRALHKDRHHTIAHYKHLLATNLDFA---VKEK 485 (564)
Q Consensus 409 qqLvetH~aRVeA~LNdrRR~Ale~Yl~ALq~~pP~phrVl~aLkrYvRAe~KDR~HTirHYqHv~avdPekA---aqmk 485 (564)
..+.=..|+++.-.|||++|-..+-=+. --=|-.-+.|=.-++++|+-|+.-||+-- .-+-
T Consensus 192 --------------~~~~~d~A~~~l~kAlqa~~~cvRAsi~--lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L 255 (389)
T COG2956 192 --------------ASSDVDRARELLKKALQADKKCVRASII--LGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEML 255 (389)
T ss_pred --------------hhhhHHHHHHHHHHHHhhCccceehhhh--hhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHH
Confidence 2222234899999999999876543221 12233445666778999999999999733 2333
Q ss_pred hhHHHHHHHHHHHhhhhhhhhhhchhhH
Q psy5197 486 PMTLEHLVDIDHTINQSMTMLQRHPALA 513 (564)
Q Consensus 486 ~qvltHL~vIeeRmNQSLsLLyr~P~la 513 (564)
.--+.||-.+++-.|---.....+|.++
T Consensus 256 ~~~Y~~lg~~~~~~~fL~~~~~~~~g~~ 283 (389)
T COG2956 256 YECYAQLGKPAEGLNFLRRAMETNTGAD 283 (389)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHccCCcc
Confidence 3334555566665554444444444433
No 91
>KOG0994|consensus
Probab=24.62 E-value=1.6e+03 Score=29.09 Aligned_cols=96 Identities=8% Similarity=0.058 Sum_probs=60.4
Q ss_pred HHHHHHHHccCCCChhHHHHHHHHHHHHHhhhhhhHHHHHHHHhhcChhHHhhcchhHHHHHHHHHHHhhhhhhhhhhch
Q psy5197 431 MNCYIEALNDVSLNTHKVQKCLQKLLRALHKDRHHTIAHYKHLLATNLDFAVKEKPMTLEHLVDIDHTINQSMTMLQRHP 510 (564)
Q Consensus 431 le~Yl~ALq~~pP~phrVl~aLkrYvRAe~KDR~HTirHYqHv~avdPekAaqmk~qvltHL~vIeeRmNQSLsLLyr~P 510 (564)
+|.=|.-++..-|..-+=|.-|++=.+..++-=.-.-.|..-+-..|+.-|-.+-.--...--..++|.|-|...|...-
T Consensus 1251 ~E~~Lsdi~~~~~~a~~~LesLq~~~~~l~~~~keL~e~~~~ik~sdi~GA~~~~r~a~~~s~ea~~r~~~s~~~l~s~~ 1330 (1758)
T KOG0994|consen 1251 EEETLSDITNSLPLAGKDLESLQREFNGLLTTYKELREQLEKIKESDILGAFNSTRHAYEQSAEAERRVDASSRELASLV 1330 (1758)
T ss_pred hhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHHHHhhhhhhhcccchh
Confidence 34444555555666667777777777666655444445666667778887777766666667778889998886664332
Q ss_pred hhHHHhHHHHHHHHHHhhccC
Q psy5197 511 ALAVKISELMQDYMQALRSKD 531 (564)
Q Consensus 511 ~la~eI~~~idellq~~Rs~~ 531 (564)
+-+ -+++||-+..++-
T Consensus 1331 ~~s-----R~e~l~~k~k~~f 1346 (1758)
T KOG0994|consen 1331 DQS-----RVEELLVKQKGDF 1346 (1758)
T ss_pred hhh-----HHHHHHHHhhhcc
Confidence 222 4556665554443
No 92
>PF05879 RHD3: Root hair defective 3 GTP-binding protein (RHD3); InterPro: IPR008803 This family consists of several eukaryotic root hair defective 3 like GTP-binding proteins. It has been speculated that the RHD3 protein is a member of a novel class of GTP-binding proteins that is widespread in eukaryotes and required for regulated cell enlargement []. The family also contains the homologous Saccharomyces cerevisiae synthetic construct enhancement of YOP1 (SEY1) protein which is involved in membrane trafficking [].; GO: 0016817 hydrolase activity, acting on acid anhydrides
Probab=24.17 E-value=1.2e+03 Score=27.87 Aligned_cols=116 Identities=15% Similarity=0.151 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHccCCCCh--hHHHHHHHHHHHHHhhhhhhHHHHH
Q psy5197 393 FQQTVQSLEEEGNAEKHQLIVMHQQRVAARINQHKKDAMNCYIEALNDVSLNT--HKVQKCLQKLLRALHKDRHHTIAHY 470 (564)
Q Consensus 393 FQ~~V~sLEeE~a~ErqqLvetH~aRVeA~LNdrRR~Ale~Yl~ALq~~pP~p--hrVl~aLkrYvRAe~KDR~HTirHY 470 (564)
|+..+..|+++....-.++..+.+.++.+.+..+-+.+|......+-..|+.. .+|++.++.-+..-..-=.=.+.-|
T Consensus 400 se~~~~~L~~dLd~~~~~lR~~el~~l~~~~eK~l~~~l~e~v~~~l~~~~~d~Wd~I~~~f~~~~~~~~~~~~~~~~~f 479 (742)
T PF05879_consen 400 SEEEREKLEEDLDEHSSKLRKEELNELVARIEKKLKSELKEPVESLLENPSPDMWDRIRKLFESATESAVSKFSDRLKGF 479 (742)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhccC
Q ss_pred HHHhhcChhHHhhcchhHHHHHHHHHHHhhhhhhhhhhchhhHHHhHHHH--HHHHHHhh
Q psy5197 471 KHLLATNLDFAVKEKPMTLEHLVDIDHTINQSMTMLQRHPALAVKISELM--QDYMQALR 528 (564)
Q Consensus 471 qHv~avdPekAaqmk~qvltHL~vIeeRmNQSLsLLyr~P~la~eI~~~i--dellq~~R 528 (564)
.++.+....+-..+..|-+. -|..+|++++ +.++..+|
T Consensus 480 ----~~s~~e~~~~~~~lr~~aw~----------------~l~~ki~e~~~~~~ll~~Lk 519 (742)
T PF05879_consen 480 ----GLSEEENEKALKKLRRKAWS----------------VLREKIREEASEDNLLIRLK 519 (742)
T ss_pred ----CCCHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHhHhHHHHHHH
No 93
>cd07288 PX_SNX15 The phosphoinositide binding Phox Homology domain of Sorting Nexin 15. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX15 contains an N-terminal PX domain and a C-terminal Microtubule Interacting and Trafficking (MIT) domain. It plays a role in protein trafficking processes in the endocytic pathway and the trans-Golgi network. The PX domain of SNX15 interacts with the PDGF receptor and is responsible for the membrane association of t
Probab=23.93 E-value=56 Score=29.93 Aligned_cols=21 Identities=5% Similarity=0.195 Sum_probs=17.3
Q ss_pred HhhhhhHHHHHHHHHHHccCC
Q psy5197 422 RINQHKKDAMNCYIEALNDVS 442 (564)
Q Consensus 422 ~LNdrRR~Ale~Yl~ALq~~p 442 (564)
-.=++||.||+.||..|.++|
T Consensus 83 ~fIeeRR~~Le~fL~~i~~~p 103 (118)
T cd07288 83 AVIEERRNAAEAMLLFTVNIP 103 (118)
T ss_pred HHHHHHHHHHHHHHHHHhCCh
Confidence 344678999999999998776
No 94
>PRK06669 fliH flagellar assembly protein H; Validated
Probab=23.87 E-value=8.1e+02 Score=25.22 Aligned_cols=84 Identities=11% Similarity=0.151 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhh-------HHHHHHHHHHHHHHHHhhhhhHHHH-HHHHHHHccCCCChhHHHHHHHHHHH
Q psy5197 386 KQKMTLRFQQTVQSLEEEGNA-------EKHQLIVMHQQRVAARINQHKKDAM-NCYIEALNDVSLNTHKVQKCLQKLLR 457 (564)
Q Consensus 386 rq~l~qhFQ~~V~sLEeE~a~-------ErqqLvetH~aRVeA~LNdrRR~Al-e~Yl~ALq~~pP~phrVl~aLkrYvR 457 (564)
.+.+.+.++..+....+++.+ +-.++.....++.+.++.+-+.... ++|.++.+..--.....+..|...+.
T Consensus 72 ~~~~~~~a~~~l~~~~~ea~~~l~~a~~q~e~~~~ea~~e~e~~~~~a~~eGy~eG~~~g~~e~~~e~~~~~~~l~~~~~ 151 (281)
T PRK06669 72 VEAAEEEAKEELLKKTDEASSIIEKLQMQIEREQEEWEEELERLIEEAKAEGYEEGYEKGREEGLEEVRELIEQLNKIIE 151 (281)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555444444332 3334455555555555554444332 34555554332233444555555555
Q ss_pred HHhhhhhhHHHH
Q psy5197 458 ALHKDRHHTIAH 469 (564)
Q Consensus 458 Ae~KDR~HTirH 469 (564)
....++...|..
T Consensus 152 ~l~~~~~~~l~~ 163 (281)
T PRK06669 152 KLIKKREEILES 163 (281)
T ss_pred HHHHHHHHHHHH
Confidence 555555555443
No 95
>PRK09546 zntB zinc transporter; Reviewed
Probab=23.81 E-value=8.5e+02 Score=25.42 Aligned_cols=26 Identities=12% Similarity=0.153 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHH
Q psy5197 387 QKMTLRFQQTVQSLEEEGNAEKHQLI 412 (564)
Q Consensus 387 q~l~qhFQ~~V~sLEeE~a~ErqqLv 412 (564)
-.++.+|-..++.|+++...--.+|.
T Consensus 149 d~ivd~~~~~l~~i~~~ld~lE~~l~ 174 (324)
T PRK09546 149 DALTDHASEFIEELHDKIIDLEDNLL 174 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35777888888888877755433443
No 96
>TIGR03090 SASP_tlp small, acid-soluble spore protein tlp. This protein family is restricted to a subset of endospore-forming bacteria such as Bacillus subtilis, all of which are in the Firmicutes (low-GC Gram-positive) lineage. Although previously designated tlp (thioredoxin-like protein), the B. subtilis protein was shown to be a minor small acid-soluble spore protein SASP, unique to spores. The motif E[VIL]XDE near the C-terminus probably represents at a germination protease cleavage site.
Probab=23.73 E-value=3.1e+02 Score=23.88 Aligned_cols=18 Identities=11% Similarity=0.442 Sum_probs=15.0
Q ss_pred hhhhhHHHHHHHHHHHcc
Q psy5197 423 INQHKKDAMNCYIEALND 440 (564)
Q Consensus 423 LNdrRR~Ale~Yl~ALq~ 440 (564)
=|+||+.||+.|..-+..
T Consensus 48 KN~RR~eSi~~~r~EIkD 65 (70)
T TIGR03090 48 KNERREQSIDGFRSEIKD 65 (70)
T ss_pred HHHhHHHHHHHHHHHHHh
Confidence 499999999999887653
No 97
>PF10454 DUF2458: Protein of unknown function (DUF2458); InterPro: IPR018858 This entry represents a family of uncharacterised proteins.
Probab=23.52 E-value=3.7e+02 Score=25.92 Aligned_cols=89 Identities=12% Similarity=0.162 Sum_probs=0.0
Q ss_pred chHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH---------HHHHhhh-----hhH
Q psy5197 363 DWSDLEERYQDMRSKSPGVAEDFKQKMTLRFQQTVQSLEEEGNAEKHQLIVMHQQR---------VAARINQ-----HKK 428 (564)
Q Consensus 363 EW~eAe~q~knL~~adPkaae~~rq~l~qhFQ~~V~sLEeE~a~ErqqLvetH~aR---------VeA~LNd-----rRR 428 (564)
.|..|-.-.-..=..+|......|+=+..+. .+|.+--.+|+.|++-|.+| |.++++- .+.
T Consensus 7 ~w~~ALryv~~~v~~n~~~~~~Ir~Li~~Q~-----~~Er~w~~~Re~l~~k~~~r~e~~k~l~~~l~s~g~~i~~~~~~ 81 (150)
T PF10454_consen 7 TWPAALRYVMKTVAQNPEFLQRIRRLIKEQH-----DHERQWWEGREALIAKQKARAEKKKKLDEVLRSVGGGISDQSEV 81 (150)
T ss_pred cHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccc
Q ss_pred HHHH-HHHHHHcc-CCCChhHHHHHHHHHHHHHh
Q psy5197 429 DAMN-CYIEALND-VSLNTHKVQKCLQKLLRALH 460 (564)
Q Consensus 429 ~Ale-~Yl~ALq~-~pP~phrVl~aLkrYvRAe~ 460 (564)
..++ .|-+.|.. | .+|+++++.+.++.+
T Consensus 82 ~~~~~e~~~EL~~fD----~kV~~a~~~m~~~~~ 111 (150)
T PF10454_consen 82 TTPEKEDEAELDKFD----EKVYKASKQMSKEQQ 111 (150)
T ss_pred ccccHHHHHHHHHHH----HHHHHHHHHHHHHHH
No 98
>KOG0579|consensus
Probab=23.41 E-value=1.4e+03 Score=27.98 Aligned_cols=126 Identities=17% Similarity=0.148 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH--hhhhhHHHHHHHHHHHccCCCChhHHHHHHHHHHHHHhhhhhh
Q psy5197 388 KMTLRFQQTVQSLEEEGNAEKHQLIVMHQQRVAAR--INQHKKDAMNCYIEALNDVSLNTHKVQKCLQKLLRALHKDRHH 465 (564)
Q Consensus 388 ~l~qhFQ~~V~sLEeE~a~ErqqLvetH~aRVeA~--LNdrRR~Ale~Yl~ALq~~pP~phrVl~aLkrYvRAe~KDR~H 465 (564)
.|.++||=.-+-|-.|-=-.|+||+..|..-.+-| +|+|- .+....+++-+- .-|-+..|-|-|-|+-
T Consensus 980 qlqEkhqL~kqqlKDqYflqRhqlL~rHekE~eQmqrynQr~---ie~Lk~rqtqer-------arLPKiqRSE~KTRma 1049 (1187)
T KOG0579|consen 980 QLQEKHQLHKQQLKDQYFLQRHQLLARHEKEMEQMQRYNQRE---IEDLKRRQTQER-------ARLPKIQRSETKTRMA 1049 (1187)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH-------hhcchhhhhhhHHHHH
Confidence 35555555555555565666666666665544443 22221 222222332221 2244556777777766
Q ss_pred HHHHHHHHhh--cChhHHhhcc-hhHHHHHHHHHHHhhhhhhhhhhchhhHHHhHHHHHHH
Q psy5197 466 TIAHYKHLLA--TNLDFAVKEK-PMTLEHLVDIDHTINQSMTMLQRHPALAVKISELMQDY 523 (564)
Q Consensus 466 TirHYqHv~a--vdPekAaqmk-~qvltHL~vIeeRmNQSLsLLyr~P~la~eI~~~idel 523 (564)
..+--=|+-+ ++.+.-..|| |.-.+-+|-=-+||.|-+.-=...-+|...-...|-||
T Consensus 1050 MfKkSLrIn~~~s~ae~rekIkqF~~QEekRqk~er~~q~qKhenqmrdl~~qce~ni~EL 1110 (1187)
T KOG0579|consen 1050 MFKKSLRINANMSNAEMREKIKQFDEQEEKRQKAEREDQDQKHENQMRDLKEQCEENIIEL 1110 (1187)
T ss_pred HHHHheeccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5444333332 1222222222 12233444444555554444444444444434444443
No 99
>KOG0548|consensus
Probab=23.22 E-value=2.8e+02 Score=32.10 Aligned_cols=76 Identities=18% Similarity=0.310 Sum_probs=55.0
Q ss_pred HHHHhhhhchHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHH----HHhhhhHHHHHHHHHHHHHHHHhhhhhHHH
Q psy5197 355 EKVTKVMKDWSDLEERYQDMRSKSPGVAEDFKQKMTLRFQQTVQSL----EEEGNAEKHQLIVMHQQRVAARINQHKKDA 430 (564)
Q Consensus 355 ~rm~~VmKEW~eAe~q~knL~~adPkaae~~rq~l~qhFQ~~V~sL----EeE~a~ErqqLvetH~aRVeA~LNdrRR~A 430 (564)
--+-+.||+|..|.+-|+.=-..||+ .++++.+|+.-++++ -++-..+| ++|--=|.++|-|. |
T Consensus 433 g~al~~mk~ydkAleay~eale~dp~-----~~e~~~~~~rc~~a~~~~~~~ee~~~r----~~~dpev~~il~d~---~ 500 (539)
T KOG0548|consen 433 GAALRAMKEYDKALEAYQEALELDPS-----NAEAIDGYRRCVEAQRGDETPEETKRR----AMADPEVQAILQDP---A 500 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCch-----hHHHHHHHHHHHHHhhcCCCHHHHHHh----hccCHHHHHHHcCH---H
Confidence 44667899999999999998888988 558999999988864 11111222 56666677777763 5
Q ss_pred HHHHHHHHccCC
Q psy5197 431 MNCYIEALNDVS 442 (564)
Q Consensus 431 le~Yl~ALq~~p 442 (564)
|...|..+|.+|
T Consensus 501 m~~~l~q~q~~p 512 (539)
T KOG0548|consen 501 MRQILEQMQENP 512 (539)
T ss_pred HHHHHHHHHhCH
Confidence 667777888777
No 100
>cd07630 BAR_SNX_like The Bin/Amphiphysin/Rvs (BAR) domain of uncharacterized Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of uncharacterized proteins with similarity to sorting nexins (SNXs), which are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=23.10 E-value=3.8e+02 Score=26.82 Aligned_cols=85 Identities=22% Similarity=0.333 Sum_probs=49.0
Q ss_pred hhhHHHHHHHHH-HHHHHHHHHHhhhhchHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q psy5197 337 DEHHAFKEALQR-LEEMHREKVTKVMKDWSDLEERYQDMRSKSPGVAEDFKQKMTLRFQQTVQSLEEEGNAEKHQLIVMH 415 (564)
Q Consensus 337 ~EH~~F~~Ak~~-LE~rhr~rm~~VmKEW~eAe~q~knL~~adPkaae~~rq~l~qhFQ~~V~sLEeE~a~ErqqLvetH 415 (564)
.+..+...|-.. |..| .+.+.+|+.|......-+..--..+|.-++..-++|..|-. .-|+.|.-=|
T Consensus 96 ~~Y~r~i~a~K~~l~~R-----~~~~~~~~~a~k~l~Kar~~k~~~ae~~~~~a~~~fe~iS~-------~~k~EL~rF~ 163 (198)
T cd07630 96 DLYSRYSESEKDMLFRR-----TCKLIEFENASKALEKAKPQKKEQAEEAKKKAETEFEEISS-------LAKKELERFH 163 (198)
T ss_pred HHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
Confidence 355555554444 4333 34578898887655422110001244444555555555544 4566778888
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHH
Q psy5197 416 QQRVAARINQHKKDAMNCYIEAL 438 (564)
Q Consensus 416 ~aRVeA~LNdrRR~Ale~Yl~AL 438 (564)
..||.++ +.+|..|+.+.
T Consensus 164 ~~Rv~~f-----k~~l~~~~E~~ 181 (198)
T cd07630 164 RQRVLEL-----QSALVCYAESQ 181 (198)
T ss_pred HHHHHHH-----HHHHHHHHHHH
Confidence 8899888 67788887654
No 101
>PRK13895 conjugal transfer protein TraM; Provisional
Probab=22.66 E-value=7.3e+02 Score=24.28 Aligned_cols=88 Identities=15% Similarity=0.247 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhchHH-HHHHHhhcccCCCC-chHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q psy5197 343 KEALQRLEEMHREKVTKVMKDWSD-LEERYQDMRSKSPG-VAEDFKQKMTLRFQQTVQSLEEEGNAEKHQLIVMHQQRVA 420 (564)
Q Consensus 343 ~~Ak~~LE~rhr~rm~~VmKEW~e-Ae~q~knL~~adPk-aae~~rq~l~qhFQ~~V~sLEeE~a~ErqqLvetH~aRVe 420 (564)
.+|++.|=.+-++-|..+--.|.+ |...+..+=.+--. .-+++-+.|..-++..+++... .|..-++++-
T Consensus 41 ~kAQq~mL~~FkeelE~iasrW~~dak~KAEkiLnaaLaaSKeam~~~m~e~~~~~~~~i~~--------~i~~~~~e~~ 112 (144)
T PRK13895 41 AKAQQEMLDQFKEELESIASRWGDDAKEKAERILNAALAASKEAMAKGMQEGAKAAAEAVRR--------EISASLAELA 112 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHH
Confidence 467777778888888888888964 33333332111101 1122333333333333333332 5567778888
Q ss_pred HHhhhhhHHHHHHHHHHH
Q psy5197 421 ARINQHKKDAMNCYIEAL 438 (564)
Q Consensus 421 A~LNdrRR~Ale~Yl~AL 438 (564)
....+-||.|+=|.+++.
T Consensus 113 ~~~~~tr~~a~~nl~As~ 130 (144)
T PRK13895 113 APVREARRVAMMNLVASG 130 (144)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 888899999999988764
No 102
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=22.48 E-value=3.2e+02 Score=26.56 Aligned_cols=52 Identities=12% Similarity=0.137 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHccCCCChhHHHHHHHHHHHHHhhhhhhHHHHHHHHhhcChhHH
Q psy5197 428 KDAMNCYIEALNDVSLNTHKVQKCLQKLLRALHKDRHHTIAHYKHLLATNLDFA 481 (564)
Q Consensus 428 R~Ale~Yl~ALq~~pP~phrVl~aLkrYvRAe~KDR~HTirHYqHv~avdPekA 481 (564)
..++..|.++|+.+|.++.--+..-+-|+. ..+-...+..|+.++..+|..+
T Consensus 56 ~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~--~g~~~~A~~a~~~Al~l~P~~~ 107 (198)
T PRK10370 56 EAQLQALQDKIRANPQNSEQWALLGEYYLW--RNDYDNALLAYRQALQLRGENA 107 (198)
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHhCCCCH
Confidence 455566666666666666544443333332 3444455666666666666543
No 103
>cd06878 PX_SNX25 The phosphoinositide binding Phox Homology domain of Sorting Nexin 25. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. The function of SNX25 is not yet known. It has been found in exosomes from human malignant pleural effusions. SNX25 shows the same domain architecture as SNX13 and SNX14, containing an N-terminal PXA domain, a regulator of G protein signaling (RGS) domain, a PX domain, and a C-terminal domain that is conserved in some S
Probab=22.48 E-value=60 Score=29.97 Aligned_cols=18 Identities=11% Similarity=0.322 Sum_probs=15.4
Q ss_pred hhhHHHHHHHHHHHccCC
Q psy5197 425 QHKKDAMNCYIEALNDVS 442 (564)
Q Consensus 425 drRR~Ale~Yl~ALq~~p 442 (564)
++||.+|+.||+.|-.+|
T Consensus 95 e~Rr~~Le~YLq~ll~~~ 112 (127)
T cd06878 95 DKSKNQLQKYLQFILEDE 112 (127)
T ss_pred HHHHHHHHHHHHHHhCCh
Confidence 378999999999998764
No 104
>PF08359 TetR_C_4: YsiA-like protein, C-terminal region; InterPro: IPR013570 The members of this family are thought to be TetR-type (tetracycline resistance) transcriptional regulators that bear particular similarity to YsiA (P94548 from SWISSPROT). This entry represents the C-terminal domain.; PDB: 1VI0_B.
Probab=22.02 E-value=4.8e+02 Score=22.92 Aligned_cols=71 Identities=21% Similarity=0.178 Sum_probs=30.9
Q ss_pred HHHHHHccCCCChhHHHHHHHHHHHHHhhhhhhHHHHHHHHhhcChhHHhhcchhHHHHHHHHHHHhhhhh
Q psy5197 433 CYIEALNDVSLNTHKVQKCLQKLLRALHKDRHHTIAHYKHLLATNLDFAVKEKPMTLEHLVDIDHTINQSM 503 (564)
Q Consensus 433 ~Yl~ALq~~pP~phrVl~aLkrYvRAe~KDR~HTirHYqHv~avdPekAaqmk~qvltHL~vIeeRmNQSL 503 (564)
...+++....+-..++.+.++.++.....+|.-++--...+...+++-..+++...-..++.|+.-+.+..
T Consensus 11 ~i~~~~~~~~~~~ekL~~~i~~~~~~~~~~~~~~~v~~~e~~~~~~~~~~~~~~~~~~~~~~i~~iI~eG~ 81 (133)
T PF08359_consen 11 RIEEAIADESSPEEKLRALIEAHLDFLEENPDLAIVLSLELRQSNEELRKKINEIRREYLRIIEEIIEEGQ 81 (133)
T ss_dssp HHHHHHCC--SHHHHHHHHHHHHHHHHHT-HHHHHHHHCTTS-SSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCCCHHHHHHHHHHHHHHHHHhCCChhhhhHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444455555555555555555443222211122333444444444444445555555555443
No 105
>KOG0994|consensus
Probab=21.79 E-value=1.9e+03 Score=28.67 Aligned_cols=85 Identities=12% Similarity=0.142 Sum_probs=46.8
Q ss_pred HHHHHHHHhhhhchHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhhhH--
Q psy5197 351 EMHREKVTKVMKDWSDLEERYQDMRSKSPGVAEDFKQKMTLRFQQTVQSLEEEGNAEKHQLIVMHQQRVAARINQHKK-- 428 (564)
Q Consensus 351 ~rhr~rm~~VmKEW~eAe~q~knL~~adPkaae~~rq~l~qhFQ~~V~sLEeE~a~ErqqLvetH~aRVeA~LNdrRR-- 428 (564)
+++++.++...| |+++|...|+.+|+-+| =.-+..-|+...++-+.-.++-+.=--.+-+.||+++|+.++-
T Consensus 1273 q~~~~~l~~~~k---eL~e~~~~ik~sdi~GA---~~~~r~a~~~s~ea~~r~~~s~~~l~s~~~~sR~e~l~~k~k~~f 1346 (1758)
T KOG0994|consen 1273 QREFNGLLTTYK---ELREQLEKIKESDILGA---FNSTRHAYEQSAEAERRVDASSRELASLVDQSRVEELLVKQKGDF 1346 (1758)
T ss_pred HHHHHHHHHHHH---HHHHHHHHhhccCchhH---HHHHHHHHHHHHHHHHhhhhhhhcccchhhhhHHHHHHHHhhhcc
Confidence 345555555444 56778888888897766 2222233333333222222222221222345599999988764
Q ss_pred -------HHHHHHHHHHccC
Q psy5197 429 -------DAMNCYIEALNDV 441 (564)
Q Consensus 429 -------~Ale~Yl~ALq~~ 441 (564)
.+|..|.+-|++-
T Consensus 1347 ~~~~~n~~~L~el~~~l~sL 1366 (1758)
T KOG0994|consen 1347 GGLAENSRLLVELRAELSSL 1366 (1758)
T ss_pred cccccccHHHHHHHHHhcCC
Confidence 3677777777664
No 106
>cd06872 PX_SNX19_like_plant The phosphoinositide binding Phox Homology domain of uncharacterized SNX19-like plant proteins. The PX domain is a phosphoinositide (PI) binding module involved in targeting proteins to PI-enriched membranes. Members in this subfamily are uncharacterized plant proteins containing an N-terminal PXA domain, a central PX domain, and a C-terminal domain that is conserved in some sorting nexins (SNXs). This is the same domain architecture found in SNX19. SNX13 and SNX14 also contain these three domains but also contain a regulator of G protein signaling (RGS) domain in between the PXA and PX domains. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction dom
Probab=21.73 E-value=64 Score=28.94 Aligned_cols=18 Identities=11% Similarity=0.305 Sum_probs=15.9
Q ss_pred hhhHHHHHHHHHHHccCC
Q psy5197 425 QHKKDAMNCYIEALNDVS 442 (564)
Q Consensus 425 drRR~Ale~Yl~ALq~~p 442 (564)
++||.+|+.||..|-+.|
T Consensus 75 e~Rr~~Le~yL~~l~~~p 92 (107)
T cd06872 75 EERCKLLDKYLKDLLVIE 92 (107)
T ss_pred HHHHHHHHHHHHHHhcCh
Confidence 578999999999998875
No 107
>COG3652 Predicted outer membrane protein [Function unknown]
Probab=21.43 E-value=3.8e+02 Score=26.76 Aligned_cols=42 Identities=24% Similarity=0.223 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHhh-----hhHHHHHHHHHHHHHHHHhhhhh
Q psy5197 386 KQKMTLRFQQTVQSLEEEG-----NAEKHQLIVMHQQRVAARINQHK 427 (564)
Q Consensus 386 rq~l~qhFQ~~V~sLEeE~-----a~ErqqLvetH~aRVeA~LNdrR 427 (564)
..-|+..-|+++..|+.-+ ..|.|++.+||+.|++-+.|.-|
T Consensus 117 ~~~~va~Hq~~~~l~~~~~~~~~an~~L~~~aet~L~~~~~H~~~a~ 163 (170)
T COG3652 117 AENMVAYHQQTLNLLETYAADSAANAELQSFAETALPRFQGHREHAE 163 (170)
T ss_pred HHHHHHHHHHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4457778899999999654 46999999999999999988433
No 108
>cd06882 PX_p40phox The phosphoinositide binding Phox Homology domain of the p40phox subunit of NADPH oxidase. The PX domain is a phosphoinositide binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. p40phox contains an N-terminal PX domain, a central SH3 domain that binds p47phox, and a C-terminal PB1 domain that interacts with p67phox. It is a cytosolic subunit of the phagocytic NADPH oxidase complex (also called Nox2 or gp91phox) which plays a crucial role in the cellular response to bacterial infection. NADPH oxidase catalyzes the transfer of electrons from NADPH to oxygen during phagocytosis forming superoxide and reactive oxygen species. p40phox positively regulates NADPH oxidase in both phosphatidylinositol-3-phosphate (PI3P)-dependent and PI3P-independent manner. The PX domain is a phospholipid-binding module involved in the membrane targeting of proteins. The p40phox
Probab=21.15 E-value=86 Score=28.85 Aligned_cols=19 Identities=16% Similarity=0.394 Sum_probs=16.7
Q ss_pred hhhHHHHHHHHHHHccCCC
Q psy5197 425 QHKKDAMNCYIEALNDVSL 443 (564)
Q Consensus 425 drRR~Ale~Yl~ALq~~pP 443 (564)
++||.+|+.||.+|-+.||
T Consensus 85 e~Rr~~Le~yl~~Ll~~p~ 103 (123)
T cd06882 85 ERRIPLLNRYMKELLSLPV 103 (123)
T ss_pred HHHHHHHHHHHHHHHcCCH
Confidence 4589999999999988877
No 109
>KOG4571|consensus
Probab=21.03 E-value=1.5e+02 Score=31.78 Aligned_cols=46 Identities=15% Similarity=0.185 Sum_probs=37.6
Q ss_pred hchHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q psy5197 362 KDWSDLEERYQDMRSKSPGVAEDFKQKMTLRFQQTVQSLEEEGNAEKHQLIVMHQQRV 419 (564)
Q Consensus 362 KEW~eAe~q~knL~~adPkaae~~rq~l~qhFQ~~V~sLEeE~a~ErqqLvetH~aRV 419 (564)
.||+.|+-+.+.|-+ =|+.-...+++||.|+.--||-+.|.-.+||
T Consensus 248 ae~E~l~ge~~~Le~------------rN~~LK~qa~~lerEI~ylKqli~e~~~~r~ 293 (294)
T KOG4571|consen 248 AEKEALLGELEGLEK------------RNEELKDQASELEREIRYLKQLILEVYKKRV 293 (294)
T ss_pred HHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 679999988888833 2455566788999999999999999988886
No 110
>TIGR02289 M3_not_pepF oligoendopeptidase, M3 family. This family consists of probable oligoendopeptidases in the M3 family, related to lactococcal PepF and group B streptococcal PepB (TIGR00181) but in a distinct clade with considerable sequence differences. The likely substrate is small peptides and not whole proteins, as with PepF, but members are not characterized and the activity profile may differ. Several bacteria have both a member of this family and a member of the PepF family.
Probab=20.71 E-value=4.5e+02 Score=29.67 Aligned_cols=111 Identities=12% Similarity=0.103 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHccCCCChhHHHHHHHHHHHHHhhhh-
Q psy5197 386 KQKMTLRFQQTVQSLEEEGNAEKHQLIVMHQQRVAARIN-QHKKDAMNCYIEALNDVSLNTHKVQKCLQKLLRALHKDR- 463 (564)
Q Consensus 386 rq~l~qhFQ~~V~sLEeE~a~ErqqLvetH~aRVeA~LN-drRR~Ale~Yl~ALq~~pP~phrVl~aLkrYvRAe~KDR- 463 (564)
.+++++.|++++.++.=+..+|..-| +++..+...-| +-|+.|.+.|..++......-..|+..|.+.-...-|-|
T Consensus 121 ~~~~~~~y~~l~~~~~~~~~Ge~~~l--~~~~~~l~~~dr~~Rk~a~~a~~~~~~~~~~~~~~il~~lv~~R~~~Akl~G 198 (549)
T TIGR02289 121 ENILSTKYREIISNISIIFEGEEKTL--SQLKPYLQDPNRSTRKKAWYARSEFFAVVEEELDRIYDELVQIRTQIALNLG 198 (549)
T ss_pred HHHHHHHHHHHHhccEEEECCEeccH--HHhhHHhhCCCHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHCC
Confidence 57899999999999877777776555 44554444321 357899999999998876555566666655432222221
Q ss_pred hhHHHHHHHHhh----cChhHHhhcchhHHHHHHHHHHH
Q psy5197 464 HHTIAHYKHLLA----TNLDFAVKEKPMTLEHLVDIDHT 498 (564)
Q Consensus 464 ~HTirHYqHv~a----vdPekAaqmk~qvltHL~vIeeR 498 (564)
--+..+|.+.+. .+|+....+..+|..++.-+=++
T Consensus 199 y~s~~e~~~~~~~r~~~~~e~v~~~l~~v~~~~~p~~~~ 237 (549)
T TIGR02289 199 FSNYRDYMYKLKNRTDYSAEDCYKYRESILKYVVPLWTK 237 (549)
T ss_pred CCCHHHHHHHHhcccCCCHHHHHHHHHHHHHHhHHHHHH
Confidence 123444554332 68998889999998888544334
No 111
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=20.67 E-value=8.9e+02 Score=24.49 Aligned_cols=111 Identities=14% Similarity=0.255 Sum_probs=65.1
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHccCCCChhHHHHHHHHHHHHHhhhhhhHHHHHHHHhh---------cChhHHhh--c
Q psy5197 416 QQRVAARINQHKKDAMNCYIEALNDVSLNTHKVQKCLQKLLRALHKDRHHTIAHYKHLLA---------TNLDFAVK--E 484 (564)
Q Consensus 416 ~aRVeA~LNdrRR~Ale~Yl~ALq~~pP~phrVl~aLkrYvRAe~KDR~HTirHYqHv~a---------vdPekAaq--m 484 (564)
+.+|++.++. |-..+..=+.+|... +..|..-|+.+-.+|...|.|...-+. .+-|+... .
T Consensus 76 ~~~v~~~~~~-~~~~~~~~l~~L~~r-------i~~L~~~i~ee~~~r~~~ie~~~~~l~~~l~~l~~~~~~Er~~R~er 147 (247)
T PF06705_consen 76 QERVENQISE-KQEQLQSRLDSLNDR-------IEALEEEIQEEKEERPQDIEELNQELVRELNELQEAFENERNEREER 147 (247)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555554 344455555555444 567778888888889999988766554 33343333 3
Q ss_pred chhHHHHHHHHHHHhhhhhhhhhhc-hhhHHHhHHHHHHHHHHhhccCCCC
Q psy5197 485 KPMTLEHLVDIDHTINQSMTMLQRH-PALAVKISELMQDYMQALRSKDETP 534 (564)
Q Consensus 485 k~qvltHL~vIeeRmNQSLsLLyr~-P~la~eI~~~idellq~~Rs~~d~p 534 (564)
-.+++-.|..+.-++++.+.==... =.-...|+..|++++..-...++.|
T Consensus 148 E~~i~krl~e~~~~l~~~i~~Ek~~Re~~~~~l~~~le~~~~~~~~~~e~f 198 (247)
T PF06705_consen 148 EENILKRLEEEENRLQEKIEKEKNTRESKLSELRSELEEVKRRREKGDEQF 198 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 4567777888888887777632222 1223466777777766333333444
No 112
>PRK03830 small acid-soluble spore protein Tlp; Provisional
Probab=20.62 E-value=4.1e+02 Score=23.31 Aligned_cols=44 Identities=14% Similarity=0.310 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHcc
Q psy5197 388 KMTLRFQQTVQSLEEEGNA-EKHQLIVMHQQRVAARINQHKKDAMNCYIEALND 440 (564)
Q Consensus 388 ~l~qhFQ~~V~sLEeE~a~-ErqqLvetH~aRVeA~LNdrRR~Ale~Yl~ALq~ 440 (564)
--|+-|+..=++|+++... +|++|.+ =|+||+.||+.|.+-+..
T Consensus 20 nTieNi~eAee~l~~~~~~~~~~~i~e---------KN~RR~esi~~~R~EIkD 64 (73)
T PRK03830 20 NTIENIEEAEETIAEEDSEKEKQAIEE---------KNERREESIDGMRSEIKD 64 (73)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHH---------HHHhHHHHHHHHHHHHHh
Confidence 3344555555566544444 4444554 489999999999877653
No 113
>cd06885 PX_SNX17_31 The phosphoinositide binding Phox Homology domain of Sorting Nexins 17 and 31. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Members of this subfamily include sorting nexin 17 (SNX17), SNX31, and similar proteins. They contain an N-terminal PX domain followed by a truncated FERM (4.1, ezrin, radixin, and moesin) domain and a unique C-terminal region. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX17 is known to regulate the trafficking and processing of a number of proteins. It binds some me
Probab=20.59 E-value=73 Score=28.35 Aligned_cols=19 Identities=11% Similarity=0.246 Sum_probs=16.3
Q ss_pred hhhhHHHHHHHHHHHccCC
Q psy5197 424 NQHKKDAMNCYIEALNDVS 442 (564)
Q Consensus 424 NdrRR~Ale~Yl~ALq~~p 442 (564)
=+.||.+|+.||..|-.+|
T Consensus 70 ie~Rr~~Le~yL~~l~~~~ 88 (104)
T cd06885 70 LEERRLQLEKYLQAVVQDP 88 (104)
T ss_pred HHHHHHHHHHHHHHHhcCh
Confidence 3568999999999998876
No 114
>KOG0612|consensus
Probab=20.27 E-value=1.9e+03 Score=28.30 Aligned_cols=148 Identities=14% Similarity=0.094 Sum_probs=85.8
Q ss_pred HHHhhhhchHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHH---HHhhhhHHHHHHHHHHHHHHHHh-hhhhHHHH
Q psy5197 356 KVTKVMKDWSDLEERYQDMRSKSPGVAEDFKQKMTLRFQQTVQSL---EEEGNAEKHQLIVMHQQRVAARI-NQHKKDAM 431 (564)
Q Consensus 356 rm~~VmKEW~eAe~q~knL~~adPkaae~~rq~l~qhFQ~~V~sL---EeE~a~ErqqLvetH~aRVeA~L-NdrRR~Al 431 (564)
..+.++..|++.+++-++|..-- .+.+..|-.- |...+.+ .+.+++.|++|.++++-=+...= --+.|.-.
T Consensus 495 ~~ke~~ek~~~~~~~~~~l~~~~----~~~~eele~~-q~~~~~~~~~~~kv~~~rk~le~~~~d~~~e~~~~~kl~~~~ 569 (1317)
T KOG0612|consen 495 EQKEVEEKLSEEEAKKRKLEALV----RQLEEELEDA-QKKNDNAADSLEKVNSLRKQLEEAELDMRAESEDAGKLRKHS 569 (1317)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH-HHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHhhHhhhh
Confidence 45667778888888888873321 1122222222 5555555 77889999999988876553333 34455677
Q ss_pred HHHHHHHccCCC---ChhHHHHHHHHH--------------H-------------HHHhhhhhhHHHHHHHHhhcChhHH
Q psy5197 432 NCYIEALNDVSL---NTHKVQKCLQKL--------------L-------------RALHKDRHHTIAHYKHLLATNLDFA 481 (564)
Q Consensus 432 e~Yl~ALq~~pP---~phrVl~aLkrY--------------v-------------RAe~KDR~HTirHYqHv~avdPekA 481 (564)
++|-.-||..-+ .....+..|+.+ + .++-|.+.++|.-=+-.+.....|+
T Consensus 570 ~e~~~~iq~~~e~~~~~~d~l~~le~~k~~ls~~~~~~~~~~e~~~~~~~~~~e~~~~l~~~i~sL~~~~~~~~~~l~k~ 649 (1317)
T KOG0612|consen 570 KELSKQIQQELEENRDLEDKLSLLEESKSKLSKENKKLRSELEKERRQRTEISEIIAELKEEISSLEETLKAGKKELLKV 649 (1317)
T ss_pred hhhhHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHHHHH
Confidence 788777776433 223333333222 2 2233344444444444556777788
Q ss_pred hhcchhHHHHHHHHHH-----Hhhhhhhhhhh
Q psy5197 482 VKEKPMTLEHLVDIDH-----TINQSMTMLQR 508 (564)
Q Consensus 482 aqmk~qvltHL~vIee-----RmNQSLsLLyr 508 (564)
..+|..-+.+....|. -++..|.+|.+
T Consensus 650 ~el~r~~~e~~~~~ek~~~e~~~e~~lk~~q~ 681 (1317)
T KOG0612|consen 650 EELKRENQERISDSEKEALEIKLERKLKMLQN 681 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888777777666555 45555555543
No 115
>PF10163 EnY2: Transcription factor e(y)2; InterPro: IPR018783 Enhancer of yellow 2 (EnY2) is a small transcription factor which is combined in a complex with the TAFII40 protein []. This protein is conserved from protozoa to humans.; PDB: 4DHX_C 3FWC_P 3M99_C 3KIK_A 3KJL_C 3FWB_C 3MHS_B 3MHH_B.
Probab=20.08 E-value=2e+02 Score=24.91 Aligned_cols=81 Identities=15% Similarity=0.190 Sum_probs=50.5
Q ss_pred hcchhHHHHHHHHH--HHhhhhhhhhhhchhhHHHhHHHHHHHHHHhhccCCCCcccc-cCCHHHHHHHHHHHHHHHHHH
Q psy5197 483 KEKPMTLEHLVDID--HTINQSMTMLQRHPALAVKISELMQDYMQALRSKDETPGSLL-SLTREAEEAILDKYKAQVIAM 559 (564)
Q Consensus 483 qmk~qvltHL~vIe--eRmNQSLsLLyr~P~la~eI~~~idellq~~Rs~~d~p~~l~-s~t~~~e~~~ld~~~~~~~~~ 559 (564)
|+|.++..+|.--- +|+++-|..--.--.-..+|+..+.+.++.--.+.-++..++ ..++.|.+.|+|.-+.++..+
T Consensus 1 ~l~~~i~~~L~~sGe~~~L~~~L~~rL~e~GW~d~vr~~~re~i~~~g~~~~~~~~l~~~i~P~Ar~~VP~~vk~ell~~ 80 (86)
T PF10163_consen 1 QLKAQIQQRLVESGEYERLKELLRQRLIECGWRDEVRQLCREIIRERGIDNLTFEDLLEEITPKARAMVPDEVKKELLQR 80 (86)
T ss_dssp HHHHHHHHHHHHCTHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH-TTTSBHHHHHHHHHHHHHHCS-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHcCcHHHHHHHHHHHHHHCChHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHH
Confidence 45566666654322 244444433223456778888888888875222223444444 468899999999999999888
Q ss_pred hhhc
Q psy5197 560 QEDF 563 (564)
Q Consensus 560 q~~~ 563 (564)
-.+|
T Consensus 81 Ir~~ 84 (86)
T PF10163_consen 81 IRAF 84 (86)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7776
Done!