RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5197
(564 letters)
>d1rw6a_ a.47.4.1 (A:) CAPPD, an extracellular domain of amyloid
beta A4 protein {Human (Homo sapiens) [TaxId: 9606]}
Length = 192
Score = 228 bits (584), Expect = 6e-73
Identities = 61/196 (31%), Positives = 107/196 (54%), Gaps = 7/196 (3%)
Query: 327 DPYFTHFEPKDEHHAFKEALQRLEEMHREKVTKVMKDWSDLEERYQDMRSKSPGVAEDFK 386
D Y ++EH F++A +RLE HRE++++VM++W + E + +++
Sbjct: 3 DKYLETPGDENEHAHFQKAKERLEAKHRERMSQVMREWEEAERQAKNLPKADK------- 55
Query: 387 QKMTLRFQQTVQSLEEEGNAEKHQLIVMHQQRVAARINQHKKDAMNCYIEALNDVSLNTH 446
+ + FQ+ V+SLE+E E+ QL+ H RV A +N ++ A+ YI AL V
Sbjct: 56 KAVIQHFQEKVESLEQEAANERQQLVETHMARVEAMLNDRRRLALENYITALQAVPPRPR 115
Query: 447 KVQKCLQKLLRALHKDRHHTIAHYKHLLATNLDFAVKEKPMTLEHLVDIDHTINQSMTML 506
V L+K +RA KDR HT+ H++H+ + A + + + HL I +NQS+++L
Sbjct: 116 HVFNMLKKYVRAEQKDRQHTLKHFEHVRMVDPKKAAQIRSQVMTHLRVIYERMNQSLSLL 175
Query: 507 QRHPALAVKISELMQD 522
PA+A +I + + +
Sbjct: 176 YNVPAVAEEIQDEVDE 191
>d2fkla1 d.230.3.1 (A:126-189) Amyloid beta a4 protein copper
binding domain (domain 2) {Human (Homo sapiens) [TaxId:
9606]}
Length = 64
Score = 121 bits (305), Expect = 4e-34
Identities = 30/64 (46%), Positives = 39/64 (60%)
Query: 50 ALLVPEHCVFDHIHNQSKCWEYERWNQTAAQSCLERDLSLRSFAMLLPCGISLFAGVEFV 109
ALLVP+ C F H C + W+ A ++C E+ +L + MLLPCGI F GVEFV
Sbjct: 1 ALLVPDKCKFLHQERMDVCETHLHWHTVAKETCSEKSTNLHDYGMLLPCGIDKFRGVEFV 60
Query: 110 CCPM 113
CCP+
Sbjct: 61 CCPL 64
>d1mwpa_ d.170.2.1 (A:) N-terminal domain of the amyloid precursor
protein {Human (Homo sapiens) [TaxId: 9606]}
Length = 96
Score = 88.3 bits (219), Expect = 6e-22
Identities = 25/47 (53%), Positives = 32/47 (68%), Gaps = 1/47 (2%)
Query: 1 IYPKHDITNIVESSNYVKITNWCKVGHSKCK-HTDWVKPYRCLEGPF 46
+YP+ ITN+VE++ V I NWCK G +CK H +V PYRCL G F
Sbjct: 49 VYPELQITNVVEANQPVTIQNWCKRGRKQCKTHPHFVIPYRCLVGEF 95
>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding
protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId:
2234]}
Length = 240
Score = 30.0 bits (67), Expect = 0.71
Identities = 21/132 (15%), Positives = 43/132 (32%), Gaps = 6/132 (4%)
Query: 352 MHREKVTKVMKDWSDLEERYQDMRSKSPGVAEDFKQKMTLRFQQTVQSLEEEGNAEK--H 409
R + V +D++ + ++ R ++ + L ++
Sbjct: 67 PERRGIGFVPQDYALFPHLSVYRNIAYGLRNVERVERDR-RVREMAEKLGIAHLLDRKPA 125
Query: 410 QLIVMHQQRVAARINQHKKDAMNCYIEALNDVSLNTHKVQKCLQKLLRALHKDRHHTIAH 469
+L +QRVA + + E +S K + L + LR + ++ I H
Sbjct: 126 RLSGGERQRVALARALVIQPRLLLLDEP---LSAVDLKTKGVLMEELRFVQREFDVPILH 182
Query: 470 YKHLLATNLDFA 481
H L A
Sbjct: 183 VTHDLIEAAMLA 194
>d2i3da1 c.69.1.36 (A:2-219) Hypothetical protein Atu1826
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 218
Score = 28.7 bits (63), Expect = 1.5
Identities = 24/130 (18%), Positives = 38/130 (29%), Gaps = 8/130 (6%)
Query: 149 EGRTYEPTGPSTPIPPGVDAHPPYSSQRHDTVQPAYAMSHDLSIGEPSYLRHEVRPRGDS 208
EGR S PI + HP + ++ + Y + + + LR R G S
Sbjct: 13 EGRYQPSKEKSAPIAIILHPHPQFGGTMNNQI--VYQLFYLFQKRGFTTLRFNFRSIGRS 70
Query: 209 KGVYVTVVFAGLAVMAAVFIAMTVLKRRSARSPQNLCNVFFYFQGFIEVDQAATPEERHV 268
+G + +A+ ++ C V Y G Q
Sbjct: 71 QGEFDHGAGELSDAASALDWVQSL------HPDSKSCWVAGYSFGAWIGMQLLMRRPEIE 124
Query: 269 ANMQINGYEN 278
M I N
Sbjct: 125 GFMSIAPQPN 134
>d1ovla_ a.123.1.1 (A:) Orphan nuclear receptor NURR1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 236
Score = 28.4 bits (63), Expect = 2.0
Identities = 14/86 (16%), Positives = 29/86 (33%), Gaps = 3/86 (3%)
Query: 412 IVMHQQRVAARINQHKKDAMNCYIEALNDVSLNTHKVQKC---LQKLLRALHKDRHHTIA 468
+ M +R + + ++ N + L D + L KLL L + R
Sbjct: 147 LAMVTERHGLKEPKRVEELQNKIVNCLKDHVTFNNGGLNRPNYLSKLLGKLPELRTLCTQ 206
Query: 469 HYKHLLATNLDFAVKEKPMTLEHLVD 494
+ + L+ V + + +D
Sbjct: 207 GLQRIFYLKLEDLVPPPAIIDKLFLD 232
>d1wf3a2 d.52.3.1 (A:181-298) GTPase Era C-terminal domain {Thermus
thermophilus [TaxId: 274]}
Length = 118
Score = 27.1 bits (60), Expect = 2.7
Identities = 9/37 (24%), Positives = 17/37 (45%), Gaps = 5/37 (13%)
Query: 343 KEALQRLEEMHREKV-----TKVMKDWSDLEERYQDM 374
+ ++LE + +KV KV DW E +++
Sbjct: 78 QATRKQLEALLGKKVYLDLEVKVYPDWRKDPEALREL 114
>d2mhra_ a.24.4.1 (A:) Myohemerythin {Sipunculan worm (Themiste
zostericola) [TaxId: 6437]}
Length = 118
Score = 27.2 bits (60), Expect = 2.7
Identities = 8/29 (27%), Positives = 10/29 (34%)
Query: 336 KDEHHAFKEALQRLEEMHREKVTKVMKDW 364
K H F E + L K K+W
Sbjct: 74 KKMHKDFLEKIGGLSAPVDAKNVDYCKEW 102
>d1n83a_ a.123.1.1 (A:) Orphan nuclear receptor ROR-alpha {Human
(Homo sapiens) [TaxId: 9606]}
Length = 251
Score = 27.0 bits (59), Expect = 5.5
Identities = 12/64 (18%), Positives = 21/64 (32%)
Query: 411 LIVMHQQRVAARINQHKKDAMNCYIEALNDVSLNTHKVQKCLQKLLRALHKDRHHTIAHY 470
++M R + + AL V H+ L KL+ + R H
Sbjct: 166 FVLMSADRSWLQEKVKIEKLQQKIQLALQHVLQKNHREDGILTKLICKVSTLRALCGRHT 225
Query: 471 KHLL 474
+ L+
Sbjct: 226 EKLM 229
>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV,
N-terminal domain {Archaeon Sulfolobus solfataricus
[TaxId: 2287]}
Length = 242
Score = 27.0 bits (59), Expect = 6.3
Identities = 14/82 (17%), Positives = 29/82 (35%), Gaps = 3/82 (3%)
Query: 400 LEEEGNAEKHQLIVMHQQRVAARINQHKKDAMNCYIEALNDVSLNTHKVQKCLQKLLRAL 459
+ N +L QQRVA K ++ E +++ +++ + L++ +
Sbjct: 130 IHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNL---DARMRDSARALVKEV 186
Query: 460 HKDRHHTIAHYKHLLATNLDFA 481
T+ H A A
Sbjct: 187 QSRLGVTLLVVSHDPADIFAIA 208
>d1egaa2 d.52.3.1 (A:183-295) GTPase Era C-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 113
Score = 26.0 bits (57), Expect = 6.9
Identities = 10/37 (27%), Positives = 16/37 (43%), Gaps = 5/37 (13%)
Query: 343 KEALQRLEEMHREKV-----TKVMKDWSDLEERYQDM 374
EA + ++EM V KV W+D E + +
Sbjct: 77 IEARKDMQEMFEAPVHLELWVKVKSGWADDERALRSL 113
>d1jfib_ a.22.1.3 (B:) Negative cofactor 2, NC2, beta chain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 135
Score = 26.0 bits (57), Expect = 7.1
Identities = 7/50 (14%), Positives = 19/50 (38%)
Query: 106 VEFVCCPMKDKERERFLEKQRKEVHKHEREELREEKARVKAAAEGRTYEP 155
E V ++ ++ + ++ + + + L+ KA + G E
Sbjct: 60 PEHVIQALESLGFGSYISEVKEVLQECKTVALKRRKASSRLENLGIPEEE 109
>d1v3ya_ d.167.1.1 (A:) Peptide deformylase {Thermus thermophilus
[TaxId: 274]}
Length = 182
Score = 26.3 bits (57), Expect = 9.2
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 113 MKDKERERFLEKQRKEVHKHERE 135
+ +RE FLE R E+ + ++E
Sbjct: 159 LPKPKREAFLEANRAELVRFQKE 181
>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 190
Score = 26.1 bits (56), Expect = 9.8
Identities = 17/152 (11%), Positives = 44/152 (28%), Gaps = 7/152 (4%)
Query: 319 ATTRVPTPDPYFTHFEPKDEHHAFKEALQRLEEMHREKVTKVMKDWSDLEERYQDMRSKS 378
TTR P P + + + + + + + S R ++
Sbjct: 34 HTTRNPRPGEEDGKDYYFVTREMMQRDIAAGDFIEHAEFSGNLYGTSKEAVRAVQAMNRI 93
Query: 379 PGVAEDFKQKMTLRFQQ-------TVQSLEEEGNAEKHQLIVMHQQRVAARINQHKKDAM 431
+ D + +++ + ++ +A R+ + D
Sbjct: 94 CVLDVDLQGVRSIKKTDLCPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTDME 153
Query: 432 NCYIEALNDVSLNTHKVQKCLQKLLRALHKDR 463
+ L D+ + + K L +AL ++
Sbjct: 154 SSKEPGLFDLVIINDDLDKAYATLKQALSEEI 185
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.131 0.391
Gapped
Lambda K H
0.267 0.0546 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,099,709
Number of extensions: 100597
Number of successful extensions: 374
Number of sequences better than 10.0: 1
Number of HSP's gapped: 370
Number of HSP's successfully gapped: 33
Length of query: 564
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 474
Effective length of database: 1,171,896
Effective search space: 555478704
Effective search space used: 555478704
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.4 bits)