Query psy5198
Match_columns 186
No_of_seqs 126 out of 769
Neff 6.1
Searched_HMMs 46136
Date Fri Aug 16 19:49:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5198.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5198hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2209|consensus 100.0 3.9E-55 8.5E-60 379.5 8.1 166 2-168 26-193 (445)
2 PF01237 Oxysterol_BP: Oxyster 100.0 2.1E-54 4.5E-59 382.7 9.2 158 19-178 1-163 (354)
3 KOG1737|consensus 100.0 5.2E-52 1.1E-56 394.4 11.9 166 2-168 416-581 (799)
4 KOG2210|consensus 100.0 2.3E-44 5E-49 321.2 7.5 161 17-178 34-208 (392)
5 KOG1737|consensus 97.2 0.00011 2.5E-09 71.6 1.2 80 97-184 647-727 (799)
6 KOG2209|consensus 94.3 0.015 3.2E-07 52.0 0.6 25 161-185 351-375 (445)
7 PF02084 Bindin: Bindin; Inte 77.6 4.5 9.8E-05 34.5 4.7 57 16-78 101-157 (238)
8 PF01237 Oxysterol_BP: Oxyster 77.3 0.32 6.9E-06 43.3 -2.4 20 165-184 273-292 (354)
9 PF10504 DUF2452: Protein of u 38.7 30 0.00064 28.0 2.6 45 94-139 85-138 (159)
10 COG2154 Pterin-4a-carbinolamin 27.7 21 0.00045 26.8 0.1 18 114-131 49-66 (101)
11 PF14714 KH_dom-like: KH-domai 27.5 69 0.0015 22.6 2.7 20 116-135 30-49 (80)
12 TIGR02814 pfaD_fam PfaD family 24.2 70 0.0015 29.9 2.9 26 57-84 357-382 (444)
13 cd04742 NPD_FabD 2-Nitropropan 23.5 71 0.0015 29.6 2.7 24 59-84 353-376 (418)
14 PLN03231 putative alpha-galact 20.3 53 0.0011 29.8 1.2 22 15-36 307-330 (357)
No 1
>KOG2209|consensus
Probab=100.00 E-value=3.9e-55 Score=379.52 Aligned_cols=166 Identities=53% Similarity=0.861 Sum_probs=159.4
Q ss_pred CCccccCCCCCCCCCCccHHHHHHhccCCCCCccccccccccCcchHHHhhhhcccHHHHHHhhCCCCHHHHHHHHHHHH
Q psy5198 2 TGRRTKLPCPRPDTESLSLWNLLCKNIGKDLSQVSMPVALNEPLNMLQRMCEELEYSELLDKAAELSDPYERMVYVAAFA 81 (186)
Q Consensus 2 ~~~R~~lp~~~~~~~~~slws~lK~~iG~DLs~islP~~~~eP~S~Lq~~ae~~~y~~lL~~aa~~~d~~eRm~~V~~f~ 81 (186)
.+.|++||++...+..+|||+|||++||+||++|+|||.|+||+|+|||++|+|+|..||.+|+.+.||.|||.+|+||+
T Consensus 26 hk~RT~LPa~m~sr~d~SIW~Ilr~ciGkelSkiTmPV~~NEPLSFLQRltEyme~~yLi~kAs~~~~p~eRmqyVAAFA 105 (445)
T KOG2209|consen 26 HKHRTSLPAPMFSRNDFSIWSILRKCIGKELSKITMPVIFNEPLSFLQRLTEYMEHTYLIHKASSQSDPVERMQYVAAFA 105 (445)
T ss_pred hhhcccCCccccccccccHHHHHHhhhchhhhheeeeeeeCCcHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccccccccCCCCCCCCCCCeEEeEecCCCeEEEeeecccCCceeeEEEe--cCCeEEEEeeeeeeEEeeceEEEeec
Q psy5198 82 VSSYGSSYFRAASKPFNPLLGETYECVREDKGFKFVAEQVSHHPPVSVCHAE--SKNFIFWQDVRIKTKFWGKSMEFQPN 159 (186)
Q Consensus 82 iS~~~~~~~~~~~KP~NPiLGETf~~~~~d~g~~~~aEQVSHhPPisa~~~e--~~~~~~~g~~~~k~kF~G~sv~i~~~ 159 (186)
+|+.++...|. .|||||+|||||+...+|.|+||+||||||||||||||+| +..+.+.|++.+|-||||+||++.|.
T Consensus 106 vsavas~weR~-gKPFNPLl~et~el~r~dlg~R~i~EQVSHHPPiSAfhaEgl~~dF~fhGsi~PklkFWgksvea~Pk 184 (445)
T KOG2209|consen 106 VSAVASQWERT-GKPFNPLLGETYELEREDLGFRFISEQVSHHPPISAFHAEGLNNDFIFHGSIYPKLKFWGKSVEAEPK 184 (445)
T ss_pred HHHHHHhHHHh-cCCCcchhhhhhhheecccceEEeehhhccCCChhHhhhcccCcceEEeeeecccceeccceeecCCC
Confidence 99999887775 8999999999999999999999999999999999999999 57899999999999999999999999
Q ss_pred ccceecccc
Q psy5198 160 ELNELNAEM 168 (186)
Q Consensus 160 G~~~l~~~~ 168 (186)
|++.|++.-
T Consensus 185 gtitle~~k 193 (445)
T KOG2209|consen 185 GTITLELLK 193 (445)
T ss_pred ceEEEEecc
Confidence 988887643
No 2
>PF01237 Oxysterol_BP: Oxysterol-binding protein ; InterPro: IPR000648 A number of eukaryotic proteins that seem to be involved with sterol synthesis and/or its regulation have been found [] to be evolutionary related. These include mammalian oxysterol-binding protein (OSBP), a protein of about 800 amino-acid residues that binds a variety of oxysterols (oxygenated derivatives of cholesterol); yeast OSH1, a protein of 859 residues that also plays a role in ergosterol synthesis; yeast proteins HES1 and KES1, highly related proteins of 434 residues that seem to play a role in ergosterol synthesis; and yeast hypothetical proteins YHR001w, YHR073w and YKR003w.; PDB: 3SPW_A 1ZI7_C 1ZHW_A 1ZHX_A 1ZHY_A 1ZHZ_A 1ZHT_A.
Probab=100.00 E-value=2.1e-54 Score=382.71 Aligned_cols=158 Identities=53% Similarity=0.892 Sum_probs=129.2
Q ss_pred cHHHHHHhccCCCCCccccccccccCcchHHHhhhhcccHHHHHHhhCCCCHHHHHHHHHHHHHHhccccccccCCCCCC
Q psy5198 19 SLWNLLCKNIGKDLSQVSMPVALNEPLNMLQRMCEELEYSELLDKAAELSDPYERMVYVAAFAVSSYGSSYFRAASKPFN 98 (186)
Q Consensus 19 slws~lK~~iG~DLs~islP~~~~eP~S~Lq~~ae~~~y~~lL~~aa~~~d~~eRm~~V~~f~iS~~~~~~~~~~~KP~N 98 (186)
|||++||+++|+||++|+||++|+||+|+||+++|+|+|++||++||+++||+|||++|++|++|+|+....+. +||||
T Consensus 1 s~w~~lK~~~G~dLs~islPv~~~eP~S~Lqr~~~~~~y~~lL~~Aa~~~d~~eR~~~V~~f~~S~~~~~~~~~-~KPfN 79 (354)
T PF01237_consen 1 SIWSFLKQKIGKDLSRISLPVFFNEPRSFLQRLAEDFEYPDLLDKAAEEDDPLERMLYVAAFALSSYSSTPGRT-KKPFN 79 (354)
T ss_dssp HHHHHHHHT--S-GGGS---GGGEEEEEGGGGGGGGSSSHHHHHGGGGS-HHHHHHHHHHHHHHHHHHHHHHHH-HEEE-
T ss_pred CHHHHhhhcCCCChhcCccCceecCCCcHHHhhhhhhhChHHHhccCCCCCHHHHHHHHHHHHHhhhhhhcCCC-CcCcC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999865453 79999
Q ss_pred CCCCCeEEeEecCCCeEEEeeecccCCceeeEEEecCCeEEEEeeeeeeEEeeceEEEeecccceec-----cccccccC
Q psy5198 99 PLLGETYECVREDKGFKFVAEQVSHHPPVSVCHAESKNFIFWQDVRIKTKFWGKSMEFQPNELNELN-----AEMKKQIP 173 (186)
Q Consensus 99 PiLGETf~~~~~d~g~~~~aEQVSHhPPisa~~~e~~~~~~~g~~~~k~kF~G~sv~i~~~G~~~l~-----~~~~~~~P 173 (186)
|||||||++.++ +|++|+||||||||||||||++|++|.++|+..+++||+|+||++.+.|..++. ++|..++|
T Consensus 80 PiLGETfe~~~~-~~~~~~aEQVSHHPPisa~~~~~~~~~~~g~~~~~~kf~g~sv~~~~~G~~~i~f~~~~e~Y~~~~p 158 (354)
T PF01237_consen 80 PILGETFELVRP-DGTRFIAEQVSHHPPISAFHAEGRGWKFYGHIEPKSKFWGNSVEVNPIGKVTITFPDGGETYTWTKP 158 (354)
T ss_dssp --TT-EE--TT--T-EEEEEEEEETTTTEEEEEEEETTEEEEEEEEEEEEE-TT-EEEEEEEEEEEEET--TEEEEEE--
T ss_pred CCCcceeeeccC-ceEEEEEecccCCCCceEEEEEcCCEEEEEEEeeeEEEeceEEEEEECCcEEEEEcCCceEEEEecC
Confidence 999999999988 699999999999999999999999999999999999999999999999977654 55667888
Q ss_pred ccccc
Q psy5198 174 STDTR 178 (186)
Q Consensus 174 ~~~~r 178 (186)
++..|
T Consensus 159 ~~~i~ 163 (354)
T PF01237_consen 159 TTYIR 163 (354)
T ss_dssp SEEEE
T ss_pred cEEEe
Confidence 87654
No 3
>KOG1737|consensus
Probab=100.00 E-value=5.2e-52 Score=394.39 Aligned_cols=166 Identities=63% Similarity=1.055 Sum_probs=160.3
Q ss_pred CCccccCCCCCCCCCCccHHHHHHhccCCCCCccccccccccCcchHHHhhhhcccHHHHHHhhCCCCHHHHHHHHHHHH
Q psy5198 2 TGRRTKLPCPRPDTESLSLWNLLCKNIGKDLSQVSMPVALNEPLNMLQRMCEELEYSELLDKAAELSDPYERMVYVAAFA 81 (186)
Q Consensus 2 ~~~R~~lp~~~~~~~~~slws~lK~~iG~DLs~islP~~~~eP~S~Lq~~ae~~~y~~lL~~aa~~~d~~eRm~~V~~f~ 81 (186)
..||++||.+..+..+.+||++||++||+|||+|+|||.|+||+|+||+++|+++|++||++|++.+|+++||++|++|+
T Consensus 416 ~~rr~~lp~~~~~~~~islw~~~k~~iGkDlskv~~PV~~nEP~S~LQr~~EdlEYs~LLd~A~~~~d~~~R~~~vaafa 495 (799)
T KOG1737|consen 416 VARRTNLPAPSKPSSSISLWSILRNNIGKDLSKVSMPVEFNEPLSLLQRVAEDLEYSELLDKAANYEDPLERMVYVAAFA 495 (799)
T ss_pred ccccccCCCCcCcCCCccHHHHHhhcccccccccccceecCCcchHHHHhhhhccchhhhHHHHhcCCcHHHHHHHHHHH
Confidence 47999999998889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccccccccCCCCCCCCCCCeEEeEecCCCeEEEeeecccCCceeeEEEecCCeEEEEeeeeeeEEeeceEEEeeccc
Q psy5198 82 VSSYGSSYFRAASKPFNPLLGETYECVREDKGFKFVAEQVSHHPPVSVCHAESKNFIFWQDVRIKTKFWGKSMEFQPNEL 161 (186)
Q Consensus 82 iS~~~~~~~~~~~KP~NPiLGETf~~~~~d~g~~~~aEQVSHhPPisa~~~e~~~~~~~g~~~~k~kF~G~sv~i~~~G~ 161 (186)
+|+|..+..|. .|||||+|||||||..+|+|++|++|||||||||+|+|+|+++|.+||+...++||||+||+|.|.|.
T Consensus 496 vS~Ya~t~~r~-~KPFNPlLgETyE~~r~dkg~rf~sEqVSHhPPi~A~h~es~~w~~~~ds~~~sKF~Gksi~v~P~G~ 574 (799)
T KOG1737|consen 496 VSSYSSTSRRT-AKPFNPLLGETYEMDRPDKGLRFFSEQVSHHPPISACHAESNNWTFWGDSKVKSKFWGKSIEVPPLGI 574 (799)
T ss_pred hhhcchhcccc-cCCCCcccccceEeeccCCceeeeeeeeccCCCcccccccCCCceeeccccccccccccceeecCCce
Confidence 99997766665 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceecccc
Q psy5198 162 NELNAEM 168 (186)
Q Consensus 162 ~~l~~~~ 168 (186)
.+|.++-
T Consensus 575 l~l~~~~ 581 (799)
T KOG1737|consen 575 LHVTLKN 581 (799)
T ss_pred EEEEEcC
Confidence 9998876
No 4
>KOG2210|consensus
Probab=100.00 E-value=2.3e-44 Score=321.18 Aligned_cols=161 Identities=32% Similarity=0.468 Sum_probs=147.0
Q ss_pred CccHHHHHHh-ccCCCCCccccccccccCcchHHHhhhhcccHHHHHHhhCCCCHHHHHHHHHHHHHHhccccccccCCC
Q psy5198 17 SLSLWNLLCK-NIGKDLSQVSMPVALNEPLNMLQRMCEELEYSELLDKAAELSDPYERMVYVAAFAVSSYGSSYFRAASK 95 (186)
Q Consensus 17 ~~slws~lK~-~iG~DLs~islP~~~~eP~S~Lq~~ae~~~y~~lL~~aa~~~d~~eRm~~V~~f~iS~~~~~~~~~~~K 95 (186)
+.-+|.++|+ .+|+|||+++||+|++||+|+||++++++.++|+|..|+..+||++||+.|++|++|+++..+. ..+|
T Consensus 34 ~s~i~~L~sq~rpg~DLs~v~LPtfile~rs~Le~~~~~~~~~dll~~~~~~~~p~~R~~~VvkwylS~~~~~~~-~~~~ 112 (392)
T KOG2210|consen 34 KSIILDLLSQLRPGMDLSRVVLPTFILEPRSLLEKYTDFSYHPDLLLEASSEADPLERMLAVVKWYLSGFHAGPK-GRKK 112 (392)
T ss_pred cceeecHhhhccCCCCcccccchhhhhhhHHHHHHhhhhhhccchhcccccCCCHHHHhhhheeeeehhcccccc-cccC
Confidence 3458899999 8999999999999999999999999999999999999999999999999999999999998764 4467
Q ss_pred CCCCCCCCeEEeEec------CCCeEEEeeecccCCceeeEEEecC--CeEEEEeeeeeeEEeeceEEEeecccc-----
Q psy5198 96 PFNPLLGETYECVRE------DKGFKFVAEQVSHHPPVSVCHAESK--NFIFWQDVRIKTKFWGKSMEFQPNELN----- 162 (186)
Q Consensus 96 P~NPiLGETf~~~~~------d~g~~~~aEQVSHhPPisa~~~e~~--~~~~~g~~~~k~kF~G~sv~i~~~G~~----- 162 (186)
||||||||||+|.|. .+.+.|+||||||||||||||++++ ++.+.|++.+|++|.|+|+.+...|..
T Consensus 113 PyNPILGEtF~~~w~~~~~p~~~~~~~iAEQVSHHPPvSAf~~~~~~~~i~v~g~v~~kSkF~G~s~~V~~~G~~~l~ll 192 (392)
T KOG2210|consen 113 PYNPILGETFTCHWKYPPHPSKGDTVFVAEQVSHHPPVSAFYVTCPKKGIQVDGHVWAKSKFLGNSIAVAMIGKGVLKLL 192 (392)
T ss_pred CCCccchhhcccccccCCCCCCceEEEEeecccCCCCcceeeEEccccCeEEEEEEeecccccccceeEEEcCCcEEEEE
Confidence 999999999999983 1458999999999999999999984 799999999999999999999999955
Q ss_pred eeccccccccCccccc
Q psy5198 163 ELNAEMKKQIPSTDTR 178 (186)
Q Consensus 163 ~l~~~~~~~~P~~~~r 178 (186)
..+++|-+++|....|
T Consensus 193 ~~~E~Y~~t~P~~~~r 208 (392)
T KOG2210|consen 193 DHDETYLITFPNAYAR 208 (392)
T ss_pred ecCcceeeccCCceee
Confidence 5577888999988877
No 5
>KOG1737|consensus
Probab=97.22 E-value=0.00011 Score=71.64 Aligned_cols=80 Identities=29% Similarity=0.331 Sum_probs=54.8
Q ss_pred CCCCCCCeEEeEecCCCeEEEeeecccCCceeeEEEecCCeEEEEeee-eeeEEeeceEEEeecccceeccccccccCcc
Q psy5198 97 FNPLLGETYECVREDKGFKFVAEQVSHHPPVSVCHAESKNFIFWQDVR-IKTKFWGKSMEFQPNELNELNAEMKKQIPST 175 (186)
Q Consensus 97 ~NPiLGETf~~~~~d~g~~~~aEQVSHhPPisa~~~e~~~~~~~g~~~-~k~kF~G~sv~i~~~G~~~l~~~~~~~~P~~ 175 (186)
..+..++|+.+.|.+.=+++.+++++ .|+ +.+.+..-|...--.. .+-.|++-.+++ |.+++.....+|+|
T Consensus 647 ~s~~~~~~l~GkW~e~~~~~~~~~~~--~~~-~~~~~~~iWk~~~~Pkn~~y~ft~fai~L-----Nel~p~l~~~lpPT 718 (799)
T KOG1737|consen 647 KSGKKVEVLTGKWDESLYYFKVDKVG--LPE-PETSEKLIWKANDLPKNNKYNFTGFAIEL-----NELTPHLKKLLPPT 718 (799)
T ss_pred CCCceeEEEeeeehhhhhhccccccc--ccc-CCccceeeeecCCCCCCcccccchhheec-----ccCCchhhccCCCC
Confidence 88999999999998866778889987 111 1111112344332222 345566666554 56777888999999
Q ss_pred cccCCCCCC
Q psy5198 176 DTRLRPDQS 184 (186)
Q Consensus 176 ~~r~~~~~~ 184 (186)
|+|||||||
T Consensus 719 DSRlRPDqr 727 (799)
T KOG1737|consen 719 DSRLRPDQR 727 (799)
T ss_pred CcccCcchh
Confidence 999999998
No 6
>KOG2209|consensus
Probab=94.32 E-value=0.015 Score=52.03 Aligned_cols=25 Identities=48% Similarity=0.820 Sum_probs=20.1
Q ss_pred cceeccccccccCcccccCCCCCCC
Q psy5198 161 LNELNAEMKKQIPSTDTRLRPDQSK 185 (186)
Q Consensus 161 ~~~l~~~~~~~~P~~~~r~~~~~~~ 185 (186)
++.+...|..++|+||+|+|||||.
T Consensus 351 LNem~~~M~~tl~pTD~RlRpDi~~ 375 (445)
T KOG2209|consen 351 LNEMDKGMESTLPPTDCRLRPDIRA 375 (445)
T ss_pred hhhhccCcccccCCcccccCchhhh
Confidence 4455566678999999999999973
No 7
>PF02084 Bindin: Bindin; InterPro: IPR000775 Bindin, the major protein component of the acrosome granule of sea urchin sperm, mediates species-specific adhesion of sperm to the egg surface during fertilisation [, ]. The protein coats the acrosomal process after externalisation by the acrosome reaction; it binds to sulphated, fucose-containing polysaccharides on the vitelline-layer receptor proteoglycans that cover the egg plasma membrane. Bindins from different genera show high levels of sequence similarity in both the mature bindin domain and in the probindin precursor region. The most highly conserved region is a 42-residue segment in the central portion of the mature bindin protein. This domain may be responsible for conserved functions of bindin, while the more highly divergent flanking regions may be responsible for its species-specific properties [].; GO: 0007342 fusion of sperm to egg plasma membrane
Probab=77.63 E-value=4.5 Score=34.52 Aligned_cols=57 Identities=23% Similarity=0.326 Sum_probs=38.6
Q ss_pred CCccHHHHHHhccCCCCCccccccccccCcchHHHhhhhcccHHHHHHhhCCCCHHHHHHHHH
Q psy5198 16 ESLSLWNLLCKNIGKDLSQVSMPVALNEPLNMLQRMCEELEYSELLDKAAELSDPYERMVYVA 78 (186)
Q Consensus 16 ~~~slws~lK~~iG~DLs~islP~~~~eP~S~Lq~~ae~~~y~~lL~~aa~~~d~~eRm~~V~ 78 (186)
.+.-++.-||-.+| -|||-|||-|+.|..+==.+-..=.|++||.. +-||.-| .+|+
T Consensus 101 ISAKvm~~ikavLg--aTKiDLPVDINDPYDlGLLLRhLRHHSNLLAn---IgdP~Vr-eqVL 157 (238)
T PF02084_consen 101 ISAKVMEDIKAVLG--ATKIDLPVDINDPYDLGLLLRHLRHHSNLLAN---IGDPEVR-EQVL 157 (238)
T ss_pred ccHHHHHHHHHHhc--ccccccccccCChhhHHHHHHHHHHHHHHHhh---cCCHHHH-HHHH
Confidence 44446777777777 58999999999998763333333367778754 5578777 4444
No 8
>PF01237 Oxysterol_BP: Oxysterol-binding protein ; InterPro: IPR000648 A number of eukaryotic proteins that seem to be involved with sterol synthesis and/or its regulation have been found [] to be evolutionary related. These include mammalian oxysterol-binding protein (OSBP), a protein of about 800 amino-acid residues that binds a variety of oxysterols (oxygenated derivatives of cholesterol); yeast OSH1, a protein of 859 residues that also plays a role in ergosterol synthesis; yeast proteins HES1 and KES1, highly related proteins of 434 residues that seem to play a role in ergosterol synthesis; and yeast hypothetical proteins YHR001w, YHR073w and YKR003w.; PDB: 3SPW_A 1ZI7_C 1ZHW_A 1ZHX_A 1ZHY_A 1ZHZ_A 1ZHT_A.
Probab=77.28 E-value=0.32 Score=43.35 Aligned_cols=20 Identities=45% Similarity=0.901 Sum_probs=12.5
Q ss_pred ccccccccCcccccCCCCCC
Q psy5198 165 NAEMKKQIPSTDTRLRPDQS 184 (186)
Q Consensus 165 ~~~~~~~~P~~~~r~~~~~~ 184 (186)
+.++...+|+||||+|||+|
T Consensus 273 ~~~~~~~~~ptDSr~R~d~~ 292 (354)
T PF01237_consen 273 TPELEEKLPPTDSRWRPDQR 292 (354)
T ss_dssp ----G-GS-TTBHHHHHHHH
T ss_pred cccccccCCchhccchHHHH
Confidence 33344578999999999986
No 9
>PF10504 DUF2452: Protein of unknown function (DUF2452); InterPro: IPR019534 This entry contains proteins that have no known function.
Probab=38.66 E-value=30 Score=28.05 Aligned_cols=45 Identities=20% Similarity=0.443 Sum_probs=28.5
Q ss_pred CCCCCCCCCCeEEeEecCCCeEEEe----ee----cccCCceeeEEEecC-CeEE
Q psy5198 94 SKPFNPLLGETYECVREDKGFKFVA----EQ----VSHHPPVSVCHAESK-NFIF 139 (186)
Q Consensus 94 ~KP~NPiLGETf~~~~~d~g~~~~a----EQ----VSHhPPisa~~~e~~-~~~~ 139 (186)
+-=|.|+.|+||.+...++|..|++ |+ .. |.-+.+|..+.. .|+.
T Consensus 85 ~cnF~pipG~iYhLY~r~~G~~ylSmisP~EWg~~~p-~~flGsyrL~~D~sWt~ 138 (159)
T PF10504_consen 85 KCNFEPIPGQIYHLYRRENGQDYLSMISPEEWGGSCP-HEFLGSYRLEADMSWTP 138 (159)
T ss_pred ccCceecCCCEEEEEECCCCCEEEEeeCHHHhCCCCC-cCEEEEEEecCCCcccc
Confidence 5568899999999987656766665 22 22 334555555543 4543
No 10
>COG2154 Pterin-4a-carbinolamine dehydratase [Coenzyme metabolism]
Probab=27.66 E-value=21 Score=26.79 Aligned_cols=18 Identities=33% Similarity=0.602 Sum_probs=14.7
Q ss_pred eEEEeeecccCCceeeEE
Q psy5198 114 FKFVAEQVSHHPPVSVCH 131 (186)
Q Consensus 114 ~~~~aEQVSHhPPisa~~ 131 (186)
+-.+||+.-|||=|...|
T Consensus 49 vA~~Ae~~~HHPdi~~~y 66 (101)
T COG2154 49 VAEIAEKLNHHPDIEVVY 66 (101)
T ss_pred HHHHHHHhCCCCCeEEEe
Confidence 335899999999988766
No 11
>PF14714 KH_dom-like: KH-domain-like of EngA bacterial GTPase enzymes, C-terminal; PDB: 2HJG_A 1MKY_A.
Probab=27.48 E-value=69 Score=22.58 Aligned_cols=20 Identities=30% Similarity=0.471 Sum_probs=17.0
Q ss_pred EEeeecccCCceeeEEEecC
Q psy5198 116 FVAEQVSHHPPVSVCHAESK 135 (186)
Q Consensus 116 ~~aEQVSHhPPisa~~~e~~ 135 (186)
+++-||+..||.-++++-++
T Consensus 30 ~Y~tQv~~~PPtFv~f~N~~ 49 (80)
T PF14714_consen 30 YYATQVGTRPPTFVLFVNDP 49 (80)
T ss_dssp EEEEEEETTTTEEEEEES-C
T ss_pred EEEEeCCCCCCEEEEEeCCc
Confidence 78999999999999998653
No 12
>TIGR02814 pfaD_fam PfaD family protein. The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se.
Probab=24.18 E-value=70 Score=29.92 Aligned_cols=26 Identities=19% Similarity=0.287 Sum_probs=20.5
Q ss_pred cHHHHHHhhCCCCHHHHHHHHHHHHHHh
Q psy5198 57 YSELLDKAAELSDPYERMVYVAAFAVSS 84 (186)
Q Consensus 57 y~~lL~~aa~~~d~~eRm~~V~~f~iS~ 84 (186)
.++.+.+| ..||..||.+|++||+.-
T Consensus 357 ~p~~~~~a--~~~pk~~malvfrwy~~~ 382 (444)
T TIGR02814 357 DPAEIERA--ERDPKHKMALVFRWYFGH 382 (444)
T ss_pred CHHHHHhh--ccCchhHHHHHHHHHHHH
Confidence 34566666 458999999999999965
No 13
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=23.47 E-value=71 Score=29.65 Aligned_cols=24 Identities=13% Similarity=0.319 Sum_probs=19.1
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHHh
Q psy5198 59 ELLDKAAELSDPYERMVYVAAFAVSS 84 (186)
Q Consensus 59 ~lL~~aa~~~d~~eRm~~V~~f~iS~ 84 (186)
+.+.+| ..||..||.+|++||+.-
T Consensus 353 ~~~~~a--~~~pk~~mal~frwy~~~ 376 (418)
T cd04742 353 AQIERA--ERNPKHKMALIFRWYLGL 376 (418)
T ss_pred HHHHhh--ccCcchHHHHHHHHHHHH
Confidence 445555 468999999999999965
No 14
>PLN03231 putative alpha-galactosidase; Provisional
Probab=20.30 E-value=53 Score=29.85 Aligned_cols=22 Identities=23% Similarity=0.560 Sum_probs=18.4
Q ss_pred CCCccHHHHHHh--ccCCCCCccc
Q psy5198 15 TESLSLWNLLCK--NIGKDLSQVS 36 (186)
Q Consensus 15 ~~~~slws~lK~--~iG~DLs~is 36 (186)
+..++||+|++- .+|.||.+++
T Consensus 307 rthfslWam~~SPLiiG~DL~~~~ 330 (357)
T PLN03231 307 KTQMTLWAVAKSPLMFGGDLRRLD 330 (357)
T ss_pred HHHHHHHHHHhCchhhcCCcccCC
Confidence 367799999999 6899998764
Done!