Query psy5198
Match_columns 186
No_of_seqs 126 out of 769
Neff 6.1
Searched_HMMs 29240
Date Fri Aug 16 19:49:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5198.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5198hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zhx_A KES1 protein; oxysterol 100.0 1.1E-51 3.6E-56 374.0 14.7 164 15-178 8-208 (438)
2 2c5i_P Vacuolar protein sortin 51.0 4 0.00014 22.9 0.4 11 118-128 1-11 (29)
3 1k2d_P MBP peptide, myelin bas 11.8 73 0.0025 17.0 0.7 11 175-185 5-15 (26)
4 2bzv_A Fiber protein 2; recept 11.7 72 0.0025 25.2 1.0 11 114-124 167-177 (181)
5 2xdp_A Lysine-specific demethy 11.2 4.5E+02 0.015 19.2 5.2 15 98-112 64-78 (123)
6 3hg3_A Alpha-galactosidase A; 11.1 66 0.0023 28.3 0.6 21 16-36 251-273 (404)
7 2qqr_A JMJC domain-containing 10.1 5.1E+02 0.017 18.7 5.3 24 98-122 63-86 (118)
8 3lrk_A Alpha-galactosidase 1; 8.8 81 0.0028 28.5 0.3 21 16-36 278-300 (479)
9 3d3a_A Beta-galactosidase; pro 8.5 1.3E+02 0.0045 27.8 1.6 28 19-46 37-67 (612)
10 3ub0_B Non-structural protein 7.9 3.5E+02 0.012 18.7 3.2 32 55-86 33-68 (87)
No 1
>1zhx_A KES1 protein; oxysterol,sterol binding protein, lipid binding protein; HET: HC3; 1.50A {Saccharomyces cerevisiae} SCOP: d.338.1.1 PDB: 1zht_A* 1zhw_A* 1zhy_A* 1zhz_A* 3spw_A* 1zi7_A
Probab=100.00 E-value=1.1e-51 Score=373.98 Aligned_cols=164 Identities=27% Similarity=0.351 Sum_probs=146.0
Q ss_pred CCCccHHHHHHhccC---CCCCccccccccccCcchHHHhhhhcccHHHHHHhhCCC----------C------HHHHHH
Q psy5198 15 TESLSLWNLLCKNIG---KDLSQVSMPVALNEPLNMLQRMCEELEYSELLDKAAELS----------D------PYERMV 75 (186)
Q Consensus 15 ~~~~slws~lK~~iG---~DLs~islP~~~~eP~S~Lq~~ae~~~y~~lL~~aa~~~----------d------~~eRm~ 75 (186)
..+.|+|+.|+++|| +|||+|+||++|+||+|+||+++++++|++||++||.++ | |++||+
T Consensus 8 ~~~~s~w~~~lK~i~k~g~DLSkIslPv~i~EP~SlLE~~~~~~e~~dLL~~aa~~~~~~~~a~~~~D~~~~~~p~eRm~ 87 (438)
T 1zhx_A 8 YASSSSWTSFLKSIASFNGDLSSLSAPPFILSPISLTEFSQYWAEHPELFLEPSFINDDNYKEHCLIDPEVESPELARML 87 (438)
T ss_dssp HTTSHHHHHHHHTTTTCCSCGGGSCCCGGGEEEEEGGGGGGGGCSCHHHHHGGGGCCTTTGGGSCTTCTTCSCHHHHHHH
T ss_pred cccccHHHHHHHHhhhcCCChhhcccCchhcCCccHHHHHHHhhhhHHHHhhhhhcccccccccccCCccccCCHHHHHH
Confidence 367899976666665 599999999999999999999999999999999998876 9 999999
Q ss_pred HHHHHHHHhcccccc------ccCCCCCCCCCCCeEEeEecC-----CC-eEEEeeecccCCceeeEEEecC--CeEEEE
Q psy5198 76 YVAAFAVSSYGSSYF------RAASKPFNPLLGETYECVRED-----KG-FKFVAEQVSHHPPVSVCHAESK--NFIFWQ 141 (186)
Q Consensus 76 ~V~~f~iS~~~~~~~------~~~~KP~NPiLGETf~~~~~d-----~g-~~~~aEQVSHhPPisa~~~e~~--~~~~~g 141 (186)
+|++|++|+|++.+. ...+|||||||||||+|.|+| .| ++|+||||||||||||||++|+ +|.++|
T Consensus 88 ~V~af~lS~~~~~y~~~~~~~~~~kKPfNPiLGETFe~~~~d~~~~~~g~~~~iaEQVSHHPPISA~~~e~~~~g~~~~g 167 (438)
T 1zhx_A 88 AVTKWFISTLKSQYCSRNESLGSEKKPLNPFLGELFVGKWENKEHPEFGETVLLSEQVSHHPPVTAFSIFNDKNKVKLQG 167 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSCCEEECCCTTCEEEEEECCTTCTTTCCEEEEEEEEEETTEEEEEEEEETTTTEEEEE
T ss_pred HHHHHHHhhhhhhcccccccccccccCcCCcccceEEEEecCccCCCCCcEEEEEEeccCCCCeeEEEEEcCCCCEEEEE
Confidence 999999999976431 235899999999999999976 35 8999999999999999999995 799999
Q ss_pred eeeeeeEEeec-eEEEeecccceec---cccccccCccccc
Q psy5198 142 DVRIKTKFWGK-SMEFQPNELNELN---AEMKKQIPSTDTR 178 (186)
Q Consensus 142 ~~~~k~kF~G~-sv~i~~~G~~~l~---~~~~~~~P~~~~r 178 (186)
+..+++||+|+ ||++.+.|..+|+ ++|..++|++..|
T Consensus 168 ~~~~kskF~G~~Sv~v~~~G~~~l~l~~E~Y~~t~P~~~v~ 208 (438)
T 1zhx_A 168 YNQIKASFTKSLMLTVKQFGHTMLDIKDESYLVTPPPLHIE 208 (438)
T ss_dssp EEEEEEEECTTCCEEEEEECCEEEEETTEEEEEECCCEEEE
T ss_pred EeeeEEEEcCceEEEEEcceEEEEEECCcEEEEecCcEEEE
Confidence 99999999999 9999999988774 6788899988655
No 2
>2c5i_P Vacuolar protein sorting protein 51; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.3A {Saccharomyces cerevisiae}
Probab=50.99 E-value=4 Score=22.93 Aligned_cols=11 Identities=45% Similarity=0.667 Sum_probs=3.2
Q ss_pred eeecccCCcee
Q psy5198 118 AEQVSHHPPVS 128 (186)
Q Consensus 118 aEQVSHhPPis 128 (186)
||||||--|+-
T Consensus 1 aeqItHKK~lr 11 (29)
T 2c5i_P 1 AEQISHKKSLR 11 (29)
T ss_dssp ------CCCCC
T ss_pred CccccccCCcc
Confidence 69999987753
No 3
>1k2d_P MBP peptide, myelin basic protein peptide with 8 residue linke; MHC class II, I-AU, H-2U, autoimmune disease; HET: NDG NAG; 2.20A {Mus musculus}
Probab=11.77 E-value=73 Score=16.97 Aligned_cols=11 Identities=27% Similarity=0.531 Sum_probs=8.3
Q ss_pred ccccCCCCCCC
Q psy5198 175 TDTRLRPDQSK 185 (186)
Q Consensus 175 ~~~r~~~~~~~ 185 (186)
.-+.+||.||.
T Consensus 5 gasq~rpsqrh 15 (26)
T 1k2d_P 5 GASQYRPSQRH 15 (26)
T ss_pred cccccCccccc
Confidence 45678999984
No 4
>2bzv_A Fiber protein 2; receptor, viral protein; 1.15A {Human adenovirus type 41} PDB: 2bzu_A
Probab=11.74 E-value=72 Score=25.21 Aligned_cols=11 Identities=55% Similarity=0.915 Sum_probs=6.5
Q ss_pred eEEEeeecccC
Q psy5198 114 FKFVAEQVSHH 124 (186)
Q Consensus 114 ~~~~aEQVSHh 124 (186)
+.||+||=|||
T Consensus 167 FSYI~e~~~~~ 177 (181)
T 2bzv_A 167 FCYITEQGSHH 177 (181)
T ss_dssp EEEEBCC----
T ss_pred EEEEccccccc
Confidence 78999999998
No 5
>2xdp_A Lysine-specific demethylase 4C; oxidoreductase, histone modification; 1.56A {Homo sapiens}
Probab=11.20 E-value=4.5e+02 Score=19.19 Aligned_cols=15 Identities=27% Similarity=0.297 Sum_probs=10.6
Q ss_pred CCCCCCeEEeEecCC
Q psy5198 98 NPLLGETYECVREDK 112 (186)
Q Consensus 98 NPiLGETf~~~~~d~ 112 (186)
-|..||.-+..|.|+
T Consensus 64 pP~~G~~V~V~W~DG 78 (123)
T 2xdp_A 64 PPAEGEVVQVKWPDG 78 (123)
T ss_dssp CCCTTCEEEEECTTS
T ss_pred CCCCCCEEEEEcCCC
Confidence 366788888778763
No 6
>3hg3_A Alpha-galactosidase A; glycoprotein, carbohydrate-binding protein, glycosidase, Lys enzyme, (beta/alpha)8 barrel, disease mutation; HET: NAG BMA MAN GLA GLC 2PE; 1.90A {Homo sapiens} PDB: 3tv8_A* 3lx9_A* 3lxa_A* 3lxb_A* 3lxc_A* 3s5z_A* 1r47_A* 1r46_A* 3gxn_A* 3gxt_A* 3hg2_A* 3hg4_A* 3hg5_A* 3gxp_A* 3s5y_A*
Probab=11.08 E-value=66 Score=28.29 Aligned_cols=21 Identities=24% Similarity=0.686 Sum_probs=18.0
Q ss_pred CCccHHHHHHh--ccCCCCCccc
Q psy5198 16 ESLSLWNLLCK--NIGKDLSQVS 36 (186)
Q Consensus 16 ~~~slws~lK~--~iG~DLs~is 36 (186)
..+++|++++- .+|.||++++
T Consensus 251 thfslWai~~sPLiiG~Dl~~~~ 273 (404)
T 3hg3_A 251 TQMALWAIMAAPLFMSNDLRHIS 273 (404)
T ss_dssp HHHHHHHHTTCCEEECSCTTSCC
T ss_pred HHHHHHHHhcCceEecCCcccCC
Confidence 56799999998 5799999875
No 7
>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A*
Probab=10.14 E-value=5.1e+02 Score=18.74 Aligned_cols=24 Identities=25% Similarity=0.230 Sum_probs=15.3
Q ss_pred CCCCCCeEEeEecCCCeEEEeeecc
Q psy5198 98 NPLLGETYECVREDKGFKFVAEQVS 122 (186)
Q Consensus 98 NPiLGETf~~~~~d~g~~~~aEQVS 122 (186)
-|..||.-+..|.|+ .-|-|.-++
T Consensus 63 pP~~G~~V~V~W~DG-~~y~a~f~g 86 (118)
T 2qqr_A 63 PPAEGEVVQVRWTDG-QVYGAKFVA 86 (118)
T ss_dssp CCCTTCEEEEECTTS-CEEEEEEEE
T ss_pred CCCCCCEEEEEcCCC-CEeeeEEec
Confidence 377888888888774 334444443
No 8
>3lrk_A Alpha-galactosidase 1; tetramer, GH27, glycoprotein, glycosida hydrolase; HET: NAG BTB; 1.95A {Saccharomyces cerevisiae} PDB: 3lrl_A* 3lrm_A*
Probab=8.82 E-value=81 Score=28.48 Aligned_cols=21 Identities=19% Similarity=0.596 Sum_probs=17.8
Q ss_pred CCccHHHHHHh--ccCCCCCccc
Q psy5198 16 ESLSLWNLLCK--NIGKDLSQVS 36 (186)
Q Consensus 16 ~~~slws~lK~--~iG~DLs~is 36 (186)
..+++|+++|- .+|.||++++
T Consensus 278 thfslWai~~SPLiiG~DL~~~~ 300 (479)
T 3lrk_A 278 AHFSMWAMVKSPLIIGANVNNLK 300 (479)
T ss_dssp HHHHHHHHTTCCEEECSCGGGCC
T ss_pred HHHHHHHHHcCceEecCCcccCC
Confidence 56799999999 5899998874
No 9
>3d3a_A Beta-galactosidase; protein structure initiative II, PSI II, NYSGXRC, 11092F, structural genomics; 2.15A {Bacteroides thetaiotaomicron vpi-5482}
Probab=8.54 E-value=1.3e+02 Score=27.79 Aligned_cols=28 Identities=14% Similarity=0.284 Sum_probs=19.6
Q ss_pred cHH-HHHHh--ccCCCCCccccccccccCcc
Q psy5198 19 SLW-NLLCK--NIGKDLSQVSMPVALNEPLN 46 (186)
Q Consensus 19 slw-s~lK~--~iG~DLs~islP~~~~eP~S 46 (186)
..| ..|++ ..|.+.-++.++=..+||..
T Consensus 37 e~w~~dl~~mK~~G~N~Vrt~v~W~~hEP~~ 67 (612)
T 3d3a_A 37 EYWEHRIKMCKALGMNTICLYVFWNFHEPEE 67 (612)
T ss_dssp GGHHHHHHHHHHHTCCEEEEECCHHHHCSST
T ss_pred HHHHHHHHHHHHcCCCEEEEcChHHhcCCCC
Confidence 456 44444 47888888888888888864
No 10
>3ub0_B Non-structural protein 7, NSP7; feline coronavirus, primer-independen polymerase, replication; 2.60A {Feline infectious peritonitis virus}
Probab=7.87 E-value=3.5e+02 Score=18.71 Aligned_cols=32 Identities=25% Similarity=0.410 Sum_probs=22.6
Q ss_pred cccH-HHHHHhhCCCCH---HHHHHHHHHHHHHhcc
Q psy5198 55 LEYS-ELLDKAAELSDP---YERMVYVAAFAVSSYG 86 (186)
Q Consensus 55 ~~y~-~lL~~aa~~~d~---~eRm~~V~~f~iS~~~ 86 (186)
+.|. ++-+++..++|| +|.|+..++|++|.-.
T Consensus 33 WayCV~LHN~Ill~~D~~~a~e~l~~Ll~~llS~~~ 68 (87)
T 3ub0_B 33 WNYCVGLHNEINLCDDPDAVLEKLLALIAFFLSKHN 68 (87)
T ss_dssp HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHcccc
Confidence 4554 677788777775 5677788888887643
Done!