RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5198
(186 letters)
>1zhx_A KES1 protein; oxysterol,sterol binding protein, lipid binding
protein; HET: HC3; 1.50A {Saccharomyces cerevisiae}
SCOP: d.338.1.1 PDB: 1zht_A* 1zhw_A* 1zhy_A* 1zhz_A*
3spw_A* 1zi7_A
Length = 438
Score = 180 bits (459), Expect = 1e-55
Identities = 42/186 (22%), Positives = 69/186 (37%), Gaps = 33/186 (17%)
Query: 11 PRPDTESLSLWNLL--CKNIGKDLSQVSMPVALNEPLNMLQRMCEELEYSELLDKAAELS 68
P S S + L + DLS +S P + P+++ + E+ EL + + ++
Sbjct: 5 PSQYASSSSWTSFLKSIASFNGDLSSLSAPPFILSPISLTEFSQYWAEHPELFLEPSFIN 64
Query: 69 D----------------PYERMVYVAAFAVSSYGSSYF------RAASKPFNPLLGETYE 106
D RM+ V + +S+ S Y + KP NP LGE +
Sbjct: 65 DDNYKEHCLIDPEVESPELARMLAVTKWFISTLKSQYCSRNESLGSEKKPLNPFLGELFV 124
Query: 107 CVREDK------GFKFVAEQVSHHPPVSVCHA--ESKNFIFWQDVRIKTKFWGKSMEFQP 158
E+K ++EQVSHHPPV+ + +IK F S+
Sbjct: 125 GKWENKEHPEFGETVLLSEQVSHHPPVTAFSIFNDKNKVKLQGYNQIKASFTK-SLMLTV 183
Query: 159 NELNEL 164
+
Sbjct: 184 KQFGHT 189
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 44.5 bits (104), Expect = 7e-06
Identities = 31/199 (15%), Positives = 58/199 (29%), Gaps = 39/199 (19%)
Query: 14 DTESLSLWNLLCKNI--GKDLS---QVSMPVALNEPLNMLQRMCEELEYSELLDKAAELS 68
+ ++ + +NL CK + + +S + L+ E LL K +
Sbjct: 255 NAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR 314
Query: 69 D---PYERMVYVAAFAVSSYGSSYFRAASKPFNPLLGETYECVREDKGFKFVAEQVSHHP 125
P E ++ +S S + ++ V DK + ++
Sbjct: 315 PQDLPRE-VLTTNPRRLSIIA------ESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE 367
Query: 126 PVSVCHAESKN-----FIFWQDVRIKTK----FWGKSMEFQPNE-LNEL---------NA 166
P AE + +F I T W ++ +N+L
Sbjct: 368 P-----AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPK 422
Query: 167 EMKKQIPSTDTRLRPDQSK 185
E IPS L+
Sbjct: 423 ESTISIPSIYLELKVKLEN 441
Score = 42.5 bits (99), Expect = 3e-05
Identities = 28/189 (14%), Positives = 61/189 (32%), Gaps = 40/189 (21%)
Query: 10 CPRPDTESLSLWNLLCKNIGKDLSQ-----VSMPVALNEPLNMLQRMCEELEYSE-LLDK 63
C P+T L L I + + ++ + ++ L+R+ + Y LL
Sbjct: 192 CNSPETVLEMLQK-LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV- 249
Query: 64 AAELSDPYERMVYVAAFAVSS--------YGSSYFRAASKPFNPLLGETYECVREDKGFK 115
L + AF +S + F +A+ + L + D+
Sbjct: 250 ---LLNVQNAKA-WNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS 305
Query: 116 FVA------------EQVSHHP-PVSVCHAESKNFI----FWQDVRIK--TKFWGKSME- 155
+ E ++ +P +S+ ++ + W+ V T S+
Sbjct: 306 LLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNV 365
Query: 156 FQPNELNEL 164
+P E ++
Sbjct: 366 LEPAEYRKM 374
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 41.2 bits (96), Expect = 9e-05
Identities = 40/223 (17%), Positives = 72/223 (32%), Gaps = 84/223 (37%)
Query: 9 PCPRPDTESLSLWNLLCKNIGKDLSQVSMPVALNEPLN-MLQ-----RMCEELEYS--EL 60
P PD + L S+P++ PL ++Q + L ++ EL
Sbjct: 222 PSNTPDKDYLL----------------SIPISC--PLIGVIQLAHYVVTAKLLGFTPGEL 263
Query: 61 LDKAAELSDPYERMVYVAAFAVSSYGSSYFRAASKPFNPL--LG----ETY--------- 105
+ + +V A A + S+F + K L +G E Y
Sbjct: 264 RSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSI 323
Query: 106 --ECVREDKG----------------FKFVAEQVSHHPP-----VSVCHAESKNFIFWQD 142
+ + ++G +V + SH P +S+ + +KN +
Sbjct: 324 LEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNG-AKNLV---- 378
Query: 143 VRIKTKFWGKSMEFQPNELNELNAEMKKQIPSTDTRLRPDQSK 185
V + G P L LN ++K + DQS+
Sbjct: 379 V---S---G-----PPQSLYGLNLTLRKAKAPSGL----DQSR 406
Score = 39.6 bits (92), Expect = 3e-04
Identities = 34/193 (17%), Positives = 61/193 (31%), Gaps = 72/193 (37%)
Query: 9 PCPRPDTESLSLWNLLCKNIGKDLSQV--SMP------VAL-NEPLNM--------LQRM 51
P P LS+ NL + + +++ +P ++L N N+ L +
Sbjct: 335 PSPM-----LSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGL 389
Query: 52 CEELEYSELLDKAAELSD----PY-ER-MVYVAAF-AVSSYGSSYFRAASKPFN-PLLGE 103
L + KA D P+ ER + + F V+S PF+ LL
Sbjct: 390 NLTLRKA----KAPSGLDQSRIPFSERKLKFSNRFLPVAS-----------PFHSHLLVP 434
Query: 104 TYECVRED---KGFKFVAEQVSHHPPVSVCHAESKNFIFWQDVR-------------IKT 147
+ + +D F A+ + + V D+R I
Sbjct: 435 ASDLINKDLVKNNVSFNAKDIQ----IPVYDTFD-----GSDLRVLSGSISERIVDCIIR 485
Query: 148 K--FWGKSMEFQP 158
W + +F+
Sbjct: 486 LPVKWETTTQFKA 498
>1io1_A Phase 1 flagellin; beta-folium, structural protein; 2.00A
{Salmonella typhimurium} SCOP: e.32.1.1
Length = 398
Score = 30.3 bits (67), Expect = 0.32
Identities = 8/12 (66%), Positives = 9/12 (75%)
Query: 40 ALNEPLNMLQRM 51
ALNE N LQR+
Sbjct: 28 ALNEINNNLQRV 39
>3v47_C Flagellin; innate immunity, leucine-rich repeat, innate immune
receptor system; HET: NAG; 2.47A {Salmonella enterica
subsp}
Length = 425
Score = 29.9 bits (66), Expect = 0.42
Identities = 8/12 (66%), Positives = 9/12 (75%)
Query: 40 ALNEPLNMLQRM 51
ALNE N LQR+
Sbjct: 40 ALNEINNNLQRV 51
>2ve3_A Putative cytochrome P450 120; oxidoreductase, monooxygenase,
metal-binding, heme, iron; HET: HEM REA; 2.10A
{Synechocystis SP} PDB: 2ve4_A*
Length = 444
Score = 29.9 bits (68), Expect = 0.48
Identities = 12/68 (17%), Positives = 21/68 (30%), Gaps = 14/68 (20%)
Query: 99 PLLGETYECVREDKGFKFVAEQVSHHPPVS-----------VCHAESKNFIFWQDVRIKT 147
P LGET + F ++ P+ + A + F+F ++
Sbjct: 21 PWLGETLNFLN---DGDFGKKRQQQFGPIFKTRLFGKNVIFISGALANRFLFTKEQETFQ 77
Query: 148 KFWGKSME 155
W S
Sbjct: 78 ATWPLSTR 85
>3k8w_A Flagellin homolog; flagellum, structural protein, bacterial
flagellu; 1.70A {Sphingomonas SP} PDB: 2zbi_A 3k8v_A
Length = 326
Score = 28.8 bits (64), Expect = 1.1
Identities = 7/12 (58%), Positives = 8/12 (66%)
Query: 40 ALNEPLNMLQRM 51
AL E N LQR+
Sbjct: 61 ALGEISNNLQRI 72
>2z1q_A Acyl-COA dehydrogenase; FAD, structural genomics, NPPSFA, Na
project on protein structural and functional analyses;
HET: FAD; 2.30A {Thermus thermophilus}
Length = 577
Score = 28.8 bits (65), Expect = 1.1
Identities = 6/40 (15%), Positives = 14/40 (35%)
Query: 28 IGKDLSQVSMPVALNEPLNMLQRMCEELEYSELLDKAAEL 67
+ + +V P +E + + R E+L +
Sbjct: 15 LLEVPERVYTPEDFDESVKEIARTTRTFVEREVLPLLERM 54
>1ucu_A Phase 1 flagellin; flagellar filament, cryo-electron microscopy,
helical reconstruction, structural protein; 4.00A
{Salmonella typhimurium} SCOP: e.32.1.1 PDB: 3a5x_A
Length = 494
Score = 28.1 bits (62), Expect = 1.9
Identities = 8/12 (66%), Positives = 9/12 (75%)
Query: 40 ALNEPLNMLQRM 51
ALNE N LQR+
Sbjct: 80 ALNEINNNLQRV 91
>3ing_A Homoserine dehydrogenase; NP_394635.1, structural genomics, center
for structural genomics, JCSG, protein structure INI
PSI-2; HET: NDP; 1.95A {Thermoplasma acidophilum}
Length = 325
Score = 27.6 bits (62), Expect = 2.5
Identities = 5/28 (17%), Positives = 13/28 (46%), Gaps = 4/28 (14%)
Query: 47 MLQRMCEELEYSELLDKAAEL----SDP 70
+++ M +++D A + S+P
Sbjct: 178 VIRNMANGRSLRDVVDDAIKKGIAESNP 205
>3c8m_A Homoserine dehydrogenase; structural genomics, APC89447, PS protein
structure initiative, midwest center for structural
genomics; HET: MSE; 1.90A {Thermoplasma volcanium GSS1}
PDB: 3jsa_A*
Length = 331
Score = 27.6 bits (62), Expect = 2.6
Identities = 4/28 (14%), Positives = 14/28 (50%), Gaps = 4/28 (14%)
Query: 47 MLQRMCEELEYSELLDKAAEL----SDP 70
++ + + E+ ++L +A +L +
Sbjct: 182 FIRELANKREFDDVLSEATKLGIVEKNY 209
>3owa_A Acyl-COA dehydrogenase; structural genomics, center for
structural genomics of infec diseases, csgid,
alpha-structure, beta-barrel; HET: MSE FAD 1PE; 1.97A
{Bacillus anthracis}
Length = 597
Score = 27.3 bits (61), Expect = 3.3
Identities = 8/37 (21%), Positives = 16/37 (43%)
Query: 31 DLSQVSMPVALNEPLNMLQRMCEELEYSELLDKAAEL 67
+ QV P + M+ + E+ +E+L + L
Sbjct: 23 TIDQVFTPEDFSSEHKMIAKTTEDFIVNEVLPELEYL 59
>2ejw_A HDH, homoserine dehydrogenase; NAD-dependent, oxidoreductase; 1.70A
{Thermus thermophilus}
Length = 332
Score = 26.4 bits (59), Expect = 5.7
Identities = 10/28 (35%), Positives = 15/28 (53%), Gaps = 4/28 (14%)
Query: 47 MLQRMCEELEYSELLDKAAEL----SDP 70
+LQ M + Y+E L +A L +DP
Sbjct: 156 ILQEMEKGRTYAEALLEAQRLGYAEADP 183
>3efm_A FAUA, ferric alcaligin siderophore receptor; membrane protein,
membrane receptor, membrane transporter, membrane, TONB
box; 2.33A {Bordetella pertussis}
Length = 707
Score = 26.5 bits (59), Expect = 6.4
Identities = 6/40 (15%), Positives = 13/40 (32%), Gaps = 8/40 (20%)
Query: 75 VYVAAFAVSSYGS--------SYFRAASKPFNPLLGETYE 106
Y ++Y S + + P+ ++YE
Sbjct: 473 TYDINDTYTAYASYTEIFQPQNARDTSGGILPPIKSKSYE 512
>1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin;
2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10
Length = 144
Score = 25.3 bits (56), Expect = 7.9
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 97 FNPLLGETYECVREDKGFKFVA 118
F P+L E YE K F+ V
Sbjct: 46 FTPVLAEFYEKHHVAKNFEVVL 67
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.131 0.396
Gapped
Lambda K H
0.267 0.0441 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,720,833
Number of extensions: 147432
Number of successful extensions: 412
Number of sequences better than 10.0: 1
Number of HSP's gapped: 404
Number of HSP's successfully gapped: 21
Length of query: 186
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 98
Effective length of database: 4,244,745
Effective search space: 415985010
Effective search space used: 415985010
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.3 bits)