RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5198
         (186 letters)



>d1zhxa1 d.338.1.1 (A:2-434) Oxysterol-binding protein homolog 4,
           KES1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
           4932]}
          Length = 433

 Score =  170 bits (432), Expect = 3e-52
 Identities = 44/175 (25%), Positives = 70/175 (40%), Gaps = 32/175 (18%)

Query: 17  SLSLWNLLCKNI---GKDLSQVSMPVALNEPLNMLQRMCEELEYSELLDKAAELSD---- 69
           S S W    K+I     DLS +S P  +  P+++ +      E+ EL  + + ++D    
Sbjct: 5   SSSSWTSFLKSIASFNGDLSSLSAPPFILSPISLTEFSQYWAEHPELFLEPSFINDDNYK 64

Query: 70  ------------PYERMVYVAAFAVSSYGSSYF------RAASKPFNPLLGETYECVRED 111
                          RM+ V  + +S+  S Y        +  KP NP LGE +    E+
Sbjct: 65  EHCLIDPEVESPELARMLAVTKWFISTLKSQYCSRNESLGSEKKPLNPFLGELFVGKWEN 124

Query: 112 K------GFKFVAEQVSHHPPVSVCHAES-KNFIFWQDVRIKTKFWGKSMEFQPN 159
           K          ++EQVSHHPPV+     + KN +  Q        + KS+     
Sbjct: 125 KEHPEFGETVLLSEQVSHHPPVTAFSIFNDKNKVKLQGYNQIKASFTKSLMLTVK 179



 Score = 24.6 bits (53), Expect = 8.9
 Identities = 8/78 (10%), Positives = 24/78 (30%), Gaps = 12/78 (15%)

Query: 106 ECVREDKGFKFVAEQVSHHPPVSVCHAESKNFIFWQDVRIKTKFWGKSMEFQPNELNELN 165
           +   ++K    ++ Q S    +   + + ++ +F+   RI            P E   + 
Sbjct: 255 DSKDKEKALYTISGQWSGSSKIIKANKKEESRLFYDAARI------------PAEHLNVK 302

Query: 166 AEMKKQIPSTDTRLRPDQ 183
              ++    +        
Sbjct: 303 PLEEQHPLESRKAWYDVA 320


>d1io1a_ e.32.1.1 (A:) Phase 1 flagellin {Salmonella typhimurium
          [TaxId: 90371]}
          Length = 395

 Score = 26.2 bits (56), Expect = 2.3
 Identities = 9/14 (64%), Positives = 10/14 (71%)

Query: 40 ALNEPLNMLQRMCE 53
          ALNE  N LQR+ E
Sbjct: 25 ALNEINNNLQRVRE 38


>d1n5ua3 a.126.1.1 (A:389-584) Serum albumin {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 196

 Score = 24.9 bits (54), Expect = 5.8
 Identities = 21/96 (21%), Positives = 36/96 (37%), Gaps = 3/96 (3%)

Query: 37  MPVALNEPLNMLQRMCEELEYSELLDKAA---ELSDPYERMVYVAAFAVSSYGSSYFRAA 93
           MP A +    +L ++C   E + + D+       S    R  + A     +Y    F A 
Sbjct: 58  MPCAEDYLSVVLNQLCVLHEKTPVSDRVTKCCTESLVNRRPCFSALEVDETYVPKEFNAE 117

Query: 94  SKPFNPLLGETYECVREDKGFKFVAEQVSHHPPVSV 129
           +  F+  +    E  R+ K    + E V H P  + 
Sbjct: 118 TFTFHADICTLSEKERQIKKQTALVELVKHKPKATK 153


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.131    0.396 

Gapped
Lambda     K      H
   0.267   0.0543    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 668,071
Number of extensions: 28548
Number of successful extensions: 69
Number of sequences better than 10.0: 1
Number of HSP's gapped: 64
Number of HSP's successfully gapped: 5
Length of query: 186
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 106
Effective length of database: 1,309,196
Effective search space: 138774776
Effective search space used: 138774776
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.5 bits)