BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5200
(271 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ED4|A Chain A, Crystal Structure Of Putative Arylsulfatase From
Escherichia Coli
pdb|3ED4|B Chain B, Crystal Structure Of Putative Arylsulfatase From
Escherichia Coli
pdb|3ED4|C Chain C, Crystal Structure Of Putative Arylsulfatase From
Escherichia Coli
pdb|3ED4|D Chain D, Crystal Structure Of Putative Arylsulfatase From
Escherichia Coli
Length = 502
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/215 (23%), Positives = 87/215 (40%), Gaps = 52/215 (24%)
Query: 77 IANDSVRFLRQSKQSFSKKPIMLVMSFPAPHGPEDSAPQYANMFFNVTSHHT---PAYDY 133
++++ V +L K S KP L ++F H P S +Y +M+ S + P Y
Sbjct: 200 VSSEVVNWLDNKKDS---KPFFLYVAFTEVHSPLASPKKYLDMYSQYMSAYQKQHPDLFY 256
Query: 134 APNPDKQWILQVTRKMQPVHRQFTDLLMTKRLQTLQSVDDAVEKIVKELKDLGELNNTYI 193
DK W + V + ++ +D V K++ ++K +GE +NT +
Sbjct: 257 GDWADKPW--------RGVGEYYANI---------SYLDAQVGKVLDKIKAMGEEDNTIV 299
Query: 194 IYTSDHG---------YHLGQFGLVKG----KSFPFEFDIRVPFLMR------------- 227
I+TSD+G Y L G G K +E IRVP +++
Sbjct: 300 IFTSDNGPVTREARKVYELNLAGETDGLRGRKDNLWEGGIRVPAIIKYGKHLPQGMVSDT 359
Query: 228 ---GPGIVPGTMYLLDVLIPQVRKFSSGSLIFIMS 259
G +P +++ +P R F SL+ ++
Sbjct: 360 PVYGLDWMPTLAKMMNFKLPTDRTFDGESLVPVLE 394
>pdb|4FDI|A Chain A, The Molecular Basis Of Mucopolysaccharidosis Iv A
pdb|4FDI|B Chain B, The Molecular Basis Of Mucopolysaccharidosis Iv A
pdb|4FDJ|A Chain A, The Molecular Basis Of Mucopolysaccharidosis Iv A, Complex
With Galnac
pdb|4FDJ|B Chain B, The Molecular Basis Of Mucopolysaccharidosis Iv A, Complex
With Galnac
Length = 502
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 60/129 (46%), Gaps = 20/129 (15%)
Query: 115 QYANMFFNVTSHHTPAYDYAPNPDKQWILQVTRKMQPVHRQFTDLLMTKRLQ---TLQSV 171
Q A F + H P + Y W + T PV+ L ++R + ++ +
Sbjct: 185 QEALDFIKRQARHHPFFLY-------WAVDATHA--PVYASKPFLGTSQRGRYGDAVREI 235
Query: 172 DDAVEKIVKELKDLGELNNTYIIYTSDHGYHL-------GQFG-LVKGKSFPFEFDIRVP 223
DD++ KI++ L+DL +NT++ +TSD+G L G G + GK FE +R P
Sbjct: 236 DDSIGKILELLQDLHVADNTFVFFTSDNGAALISAPEQGGSNGPFLCGKQTTFEGGMREP 295
Query: 224 FLMRGPGIV 232
L PG V
Sbjct: 296 ALAWWPGHV 304
>pdb|1E1Z|P Chain P, Crystal Structure Of An Arylsulfatase A Mutant C69s
Length = 489
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 48/99 (48%), Gaps = 11/99 (11%)
Query: 167 TLQSVDDAVEKIVKELKDLGELNNTYIIYTSDHGYHL------GQFGLVK-GKSFPFEFD 219
+L +D AV ++ + DLG L T +I+T+D+G G GL++ GK +E
Sbjct: 232 SLMELDAAVGTLMTAIGDLGLLEETLVIFTADNGPETMRMSRGGCSGLLRCGKGTTYEGG 291
Query: 220 IRVPFLMRGPG-IVPGTMYLLDV---LIPQVRKFSSGSL 254
+R P L PG I PG + L L+P + + L
Sbjct: 292 VREPALAFWPGHIAPGVTHELASSLDLLPTLAALAGAPL 330
>pdb|1E3C|P Chain P, Crystal Structure Of An Arylsulfatase A Mutant C69s Soaked
In Synthetic Substrate
Length = 489
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 48/99 (48%), Gaps = 11/99 (11%)
Query: 167 TLQSVDDAVEKIVKELKDLGELNNTYIIYTSDHGYHL------GQFGLVK-GKSFPFEFD 219
+L +D AV ++ + DLG L T +I+T+D+G G GL++ GK +E
Sbjct: 232 SLMELDAAVGTLMTAIGDLGLLEETLVIFTADNGPETMRMSRGGCSGLLRCGKGTTYEGG 291
Query: 220 IRVPFLMRGPG-IVPGTMYLLDV---LIPQVRKFSSGSL 254
+R P L PG I PG + L L+P + + L
Sbjct: 292 VREPALAFWPGHIAPGVTHELASSLDLLPTLAALAGAPL 330
>pdb|1N2K|A Chain A, Crystal Structure Of A Covalent Intermediate Of Endogenous
Human Arylsulfatase A
pdb|1N2L|A Chain A, Crystal Structure Of A Covalent Intermediate Of Endogenous
Human Arylsulfatase A
pdb|1AUK|A Chain A, Human Arylsulfatase A
Length = 489
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 48/99 (48%), Gaps = 11/99 (11%)
Query: 167 TLQSVDDAVEKIVKELKDLGELNNTYIIYTSDHGYHL------GQFGLVK-GKSFPFEFD 219
+L +D AV ++ + DLG L T +I+T+D+G G GL++ GK +E
Sbjct: 232 SLMELDAAVGTLMTAIGDLGLLEETLVIFTADNGPETMRMSRGGCSGLLRCGKGTTYEGG 291
Query: 220 IRVPFLMRGPG-IVPGTMYLLDV---LIPQVRKFSSGSL 254
+R P L PG I PG + L L+P + + L
Sbjct: 292 VREPALAFWPGHIAPGVTHELASSLDLLPTLAALAGAPL 330
>pdb|1E2S|P Chain P, Crystal Structure Of An Arylsulfatase A Mutant C69a
Length = 489
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 48/99 (48%), Gaps = 11/99 (11%)
Query: 167 TLQSVDDAVEKIVKELKDLGELNNTYIIYTSDHGYHL------GQFGLVK-GKSFPFEFD 219
+L +D AV ++ + DLG L T +I+T+D+G G GL++ GK +E
Sbjct: 232 SLMELDAAVGTLMTAIGDLGLLEETLVIFTADNGPETMRMSRGGCSGLLRCGKGTTYEGG 291
Query: 220 IRVPFLMRGPG-IVPGTMYLLDV---LIPQVRKFSSGSL 254
+R P L PG I PG + L L+P + + L
Sbjct: 292 VREPALAFWPGHIAPGVTHELASSLDLLPTLAALAGAPL 330
>pdb|1E33|P Chain P, Crystal Structure Of An Arylsulfatase A Mutant P426l
Length = 489
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 48/99 (48%), Gaps = 11/99 (11%)
Query: 167 TLQSVDDAVEKIVKELKDLGELNNTYIIYTSDHGYHL------GQFGLVK-GKSFPFEFD 219
+L +D AV ++ + DLG L T +I+T+D+G G GL++ GK +E
Sbjct: 232 SLMELDAAVGTLMTAIGDLGLLEETLVIFTADNGPETMRMSRGGCSGLLRCGKGTTYEGG 291
Query: 220 IRVPFLMRGPG-IVPGTMYLLDV---LIPQVRKFSSGSL 254
+R P L PG I PG + L L+P + + L
Sbjct: 292 VREPALAFWPGHIAPGVTHELASSLDLLPTLAALAGAPL 330
>pdb|2W8S|B Chain B, Crystal Structure Of A Catalytically Promiscuous
Phosphonate Monoester Hydrolase From Burkholderia
Caryophylli
pdb|2W8S|C Chain C, Crystal Structure Of A Catalytically Promiscuous
Phosphonate Monoester Hydrolase From Burkholderia
Caryophylli
pdb|2W8S|D Chain D, Crystal Structure Of A Catalytically Promiscuous
Phosphonate Monoester Hydrolase From Burkholderia
Caryophylli
Length = 514
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 168 LQSVDDAVEKIVKELKDLGELNNTYIIYTSDHGYHLGQFGLVKGKSFPFEFDIRVPFLMR 227
+ +DD + ++ L + G+ ++T II+TSDHG LG L+ + E R+P +++
Sbjct: 294 ITEIDDCLGRVFAYLDETGQWDDTLIIFTSDHGEQLGDHHLLGKIGYNAE-SFRIPLVIK 352
Query: 228 GPG 230
G
Sbjct: 353 DAG 355
>pdb|2W8S|A Chain A, Crystal Structure Of A Catalytically Promiscuous
Phosphonate Monoester Hydrolase From Burkholderia
Caryophylli
Length = 513
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 168 LQSVDDAVEKIVKELKDLGELNNTYIIYTSDHGYHLGQFGLVKGKSFPFEFDIRVPFLMR 227
+ +DD + ++ L + G+ ++T II+TSDHG LG L+ + E R+P +++
Sbjct: 293 ITEIDDCLGRVFAYLDETGQWDDTLIIFTSDHGEQLGDHHLLGKIGYNAE-SFRIPLVIK 351
Query: 228 GPG 230
G
Sbjct: 352 DAG 354
>pdb|2VQR|A Chain A, Crystal Structure Of A Phosphonate Monoester Hydrolase
From Rhizobium Leguminosarum: A New Member Of The
Alkaline Phosphatase Superfamily
Length = 514
Score = 40.8 bits (94), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 168 LQSVDDAVEKIVKELKDLGELNNTYIIYTSDHGYHLGQFGLVKGKSFPFEFDIRVPFLMR 227
+ VDD + ++ L + G+ ++T II+TSDHG LG L+ GK + R+P +++
Sbjct: 294 ITEVDDCLGRVFSYLDETGQWDDTLIIFTSDHGEQLGDHHLL-GKIGYNDPSFRIPLVIK 352
Query: 228 GPG 230
G
Sbjct: 353 DAG 355
>pdb|2QZU|A Chain A, Crystal Structure Of The Putative Sulfatase Yidj From
Bacteroides Fragilis. Northeast Structural Genomics
Consortium Target Bfr123
Length = 491
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/166 (21%), Positives = 70/166 (42%), Gaps = 21/166 (12%)
Query: 68 YYNDYYPDLIANDSVRFLRQSKQSFSKKPIMLVMSFPAPHGPEDSAP-QYANMFFNVTSH 126
Y N + P+ A+ ++ ++ K K+P LV+S PH + P +Y ++ ++
Sbjct: 195 YVNQWGPEYEASKAIEYINGQKDQ--KQPFALVVSXNPPHTGYELVPDRYKEIYKDL--- 249
Query: 127 HTPAYDYAPNPDKQWILQVTRKMQPVHRQFTDLL---MTKRLQTLQSVDDAVEKIVKELK 183
D + + + + + D + + VD+ V +I++ LK
Sbjct: 250 -----------DVEALCKGRPDIPAKGTEXGDYFRNNIRNYYACITGVDENVGRIIEALK 298
Query: 184 DLGELNNTYIIYTSDHGYHLGQFGLVKGKSFPFEFDIRVPFLMRGP 229
+NT +++TSDHG G GK +E R+P ++ P
Sbjct: 299 QNNLFDNTIVVFTSDHGICXGAHENA-GKDIFYEESXRIPXILSWP 343
>pdb|1P49|A Chain A, Structure Of Human Placental EstroneDHEA SULFATASE
Length = 562
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 12/78 (15%)
Query: 167 TLQSVDDAVEKIVKELKDLGELNNTYIIYTSDHGYHL-----------GQFGLVK-GKSF 214
++ +D +V +I+ L +L N+T I +TSD G H+ G G+ K GK+
Sbjct: 290 AVEEMDWSVGQILNLLDELRLANDTLIYFTSDQGAHVEEVSSKGEIHGGSNGIYKGGKAN 349
Query: 215 PFEFDIRVPFLMRGPGIV 232
+E IRVP ++R P ++
Sbjct: 350 NWEGGIRVPGILRWPRVI 367
>pdb|1HDH|A Chain A, Arylsulfatase From Pseudomonas Aeruginosa
pdb|1HDH|B Chain B, Arylsulfatase From Pseudomonas Aeruginosa
Length = 536
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/151 (21%), Positives = 63/151 (41%), Gaps = 32/151 (21%)
Query: 72 YYPDLIANDSVRFLRQSKQSFSKKPIMLVMSFPAPHGPEDSAPQYANMFFNVTSHHTPAY 131
Y D + +++L++ QS +P + F APH P AP+ + + Y
Sbjct: 179 YSSDAFGDKLLQYLKERDQS---RPFFAYLPFSAPHWPL-QAPR------EIVEKYRGRY 228
Query: 132 DYAPNPDKQWILQVTRKMQPVHRQFTD---LLMTKRLQTLQSVDDA-------------- 174
D P +Q L +++ V L +T+ + L+ + A
Sbjct: 229 DAGPEALRQERLARLKELGLVEADVEAHPVLALTREWEALEDEERAKSARAMEVYAAMVE 288
Query: 175 -----VEKIVKELKDLGELNNTYIIYTSDHG 200
+ ++V L+ GEL+NT++++ SD+G
Sbjct: 289 RMDWNIGRVVDYLRRQGELDNTFVLFMSDNG 319
>pdb|2IUE|A Chain A, Pactolus I-Domain: Functional Switching Of The Rossmann
Fold
Length = 212
Score = 30.8 bits (68), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 140 QWILQVTRKMQPVHRQFTDLLMTKRLQTLQSVDDAVEKIVKELKDLGELNNT-YIIYTSD 198
Q IL++T R+ L++ +L T + DAV ++ L ++G N T +++ +D
Sbjct: 54 QHILKLTADSSQFQRELRKQLVSGKLATPKGQLDAVVQVAICLGEIGWRNGTRFLVLVTD 113
Query: 199 HGYHLGQ 205
+ +HL +
Sbjct: 114 NDFHLAK 120
>pdb|3IKW|A Chain A, Structure Of Heparinase I From Bacteroides
Thetaiotaomicron
Length = 374
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 41/105 (39%), Gaps = 20/105 (19%)
Query: 138 DKQWILQVTRKMQPVHRQFTDLLMTK---RLQTLQSVDDAVEKIVK-ELKDLGELNNTYI 193
D W+ T K + R FT+L K R + L++ D+ +E K E K E + Y
Sbjct: 31 DGCWVAVGTNKPHAIQRDFTNLFDGKPSYRFE-LKTEDNTLEGYAKGETKGRAEFSYCYA 89
Query: 194 IYTSDHG---------------YHLGQFGLVKGKSFPFEFDIRVP 223
G YH G+ +G S +EF + +P
Sbjct: 90 TSDDFRGLPADVYQKAQITKTVYHHGKGACPQGSSRDYEFSVYIP 134
>pdb|3ILR|A Chain A, Structure Of Heparinase I From Bacteroides
Thetaiotaomicron In Complex With Tetrasaccharide Product
Length = 370
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 41/105 (39%), Gaps = 20/105 (19%)
Query: 138 DKQWILQVTRKMQPVHRQFTDLLMTK---RLQTLQSVDDAVEKIVK-ELKDLGELNNTYI 193
D W+ T K + R FT+L K R + L++ D+ +E K E K E + Y
Sbjct: 27 DGCWVAVGTNKPHAIQRDFTNLFDGKPSYRFE-LKTEDNTLEGYAKGETKGRAEFSYCYA 85
Query: 194 IYTSDHG---------------YHLGQFGLVKGKSFPFEFDIRVP 223
G YH G+ +G S +EF + +P
Sbjct: 86 TSDDFRGLPADVYQKAQITKTVYHHGKGACPQGSSRDYEFSVYIP 130
>pdb|3B5Q|A Chain A, Crystal Structure Of A Putative Sulfatase (Np_810509.1)
From Bacteroides Thetaiotaomicron Vpi-5482 At 2.40 A
Resolution
pdb|3B5Q|B Chain B, Crystal Structure Of A Putative Sulfatase (Np_810509.1)
From Bacteroides Thetaiotaomicron Vpi-5482 At 2.40 A
Resolution
Length = 482
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 27/63 (42%)
Query: 169 QSVDDAVEKIVKELKDLGELNNTYIIYTSDHGYHLGQFGLVKGKSFPFEFDIRVPFLMRG 228
+ V V+ ++K L NT ++ +DHG V ++ VPF+ G
Sbjct: 255 KXVSKQVDSVLKALYSTPAGRNTIVVIXADHGDGXASHRXVTKHISFYDEXTNVPFIFAG 314
Query: 229 PGI 231
PGI
Sbjct: 315 PGI 317
>pdb|1FSU|A Chain A, 4-Sulfatase (Human)
Length = 492
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Query: 171 VDDAVEKIVKELKDLGELNNTYIIYTSDHGYHLGQFGLVKGKSFPFE 217
+D+AV + LK G NNT I+++D+G GQ L G ++P
Sbjct: 232 MDEAVGNVTAALKSSGLWNNTVFIFSTDNG---GQT-LAGGNNWPLR 274
>pdb|3INA|A Chain A, Crystal Structure Of Heparin Lyase I H151a Mutant
Complexed With A Dodecasaccharide Heparin
Length = 378
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 41/105 (39%), Gaps = 20/105 (19%)
Query: 138 DKQWILQVTRKMQPVHRQFTDLLMTK---RLQTLQSVDDAVEKIVK-ELKDLGELNNTYI 193
D W+ T K + R FT+L K R + L++ D+ +E K E K E + Y
Sbjct: 33 DGCWVAVGTNKPHAIQRDFTNLFDGKPSYRFE-LKTEDNTLEGYAKGETKGRAEFSYCYA 91
Query: 194 IYTSDHG---------------YHLGQFGLVKGKSFPFEFDIRVP 223
G YH G+ +G S +EF + +P
Sbjct: 92 TSDDFKGLPADVYQKAQITKTVYHHGKGACPQGSSRDYEFSVYIP 136
>pdb|3IMN|A Chain A, Crystal Structure Of Heparin Lyase I From Bacteroides
Thetaiotaomicron
pdb|3IN9|A Chain A, Crystal Structure Of Heparin Lyase I Complexed With
Disaccharide Heparin
Length = 378
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 41/105 (39%), Gaps = 20/105 (19%)
Query: 138 DKQWILQVTRKMQPVHRQFTDLLMTK---RLQTLQSVDDAVEKIVK-ELKDLGELNNTYI 193
D W+ T K + R FT+L K R + L++ D+ +E K E K E + Y
Sbjct: 33 DGCWVAVGTNKPHAIQRDFTNLFDGKPSYRFE-LKTEDNTLEGYAKGETKGRAEFSYCYA 91
Query: 194 IYTSDHG---------------YHLGQFGLVKGKSFPFEFDIRVP 223
G YH G+ +G S +EF + +P
Sbjct: 92 TSDDFKGLPADVYQKAQITKTVYHHGKGACPQGSSRDYEFSVYIP 136
>pdb|4GTX|A Chain A, Crystal Structure Of Mouse Enpp1 In Complex With Tmp
pdb|4GTX|B Chain B, Crystal Structure Of Mouse Enpp1 In Complex With Tmp
pdb|4GTY|A Chain A, Crystal Structure Of Mouse Enpp1 In Complex With Gmp
pdb|4GTY|B Chain B, Crystal Structure Of Mouse Enpp1 In Complex With Gmp
pdb|4GTZ|A Chain A, Crystal Structure Of Mouse Enpp1 In Complex With Cmp
pdb|4GTZ|B Chain B, Crystal Structure Of Mouse Enpp1 In Complex With Cmp
Length = 823
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 162 TKRLQTLQSVDDAVEKIVKELKDLGELNNTYIIYTSDHGYHLG 204
++ ++ LQ VD V ++ LKDLG +I SDHG G
Sbjct: 287 SEVIKALQKVDRLVGMLMDGLKDLGLDKCLNLILISDHGMEQG 329
>pdb|2AA1|B Chain B, Crystal Structure Of The Cathodic Hemoglobin Isolated
From The Antarctic Fish Trematomus Newnesi
pdb|2AA1|D Chain D, Crystal Structure Of The Cathodic Hemoglobin Isolated
From The Antarctic Fish Trematomus Newnesi
Length = 146
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 7/64 (10%)
Query: 9 SRNLLYFDISHGYFGKYLNKYNGSYIPPGWREWGALIMNSKYYNYSINMNGRKIKHGEDY 68
+R L+ + + YFGK+ N YN + I M SK+ +N R +K+ +D
Sbjct: 29 ARCLVVYPWTQRYFGKFGNLYNAAAIAQN-------AMVSKHGTTILNGLDRAVKNMDDI 81
Query: 69 YNDY 72
N Y
Sbjct: 82 TNTY 85
>pdb|4B56|A Chain A, Structure Of Ectonucleotide
Pyrophosphatase-Phosphodiesterase-1 (Npp1)
pdb|4B56|B Chain B, Structure Of Ectonucleotide
Pyrophosphatase-Phosphodiesterase-1 (Npp1)
Length = 820
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 162 TKRLQTLQSVDDAVEKIVKELKDLGELNNTYIIYTSDHGYHLG 204
++ ++ LQ VD V ++ LKDLG +I SDHG G
Sbjct: 283 SEVIKALQKVDRLVGMLMDGLKDLGLDKCLNLILISDHGMEQG 325
>pdb|1CP9|B Chain B, Crystal Structure Of Penicillin G Acylase From The Bro1
Mutant Strain Of Providencia Rettgeri
Length = 553
Score = 28.1 bits (61), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 130 AYDYAPNPDKQWILQVTRKMQPVHRQFTDLLMTKRLQTLQSVDDAVEKIVKELKDLGELN 189
AYD D ILQ T ++ HR FT L T+ Q L S D++V K+V L+ +N
Sbjct: 273 AYDKLTADDMWAILQQTSRVDLNHRLFTPFL-TQATQGLPSNDNSV-KLVSMLQQWDGIN 330
>pdb|2W5R|A Chain A, Structure-Based Mechanism Of Lipoteichoic Acid Synthesis
By Staphylococcus Aureus Ltas
Length = 424
Score = 28.1 bits (61), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 25/42 (59%)
Query: 158 DLLMTKRLQTLQSVDDAVEKIVKELKDLGELNNTYIIYTSDH 199
D + +QT + +D+A+E+ + +LK G +N+ I+ DH
Sbjct: 218 DATVDGYIQTARYLDEALEEYINDLKKKGLYDNSVIMIYGDH 259
>pdb|2W5Q|A Chain A, Structure-Based Mechanism Of Lipoteichoic Acid Synthesis
By Staphylococcus Aureus Ltas.
pdb|2W5S|A Chain A, Structure-Based Mechanism Of Lipoteichoic Acid Synthesis
By Staphylococcus Aureus Ltas.
pdb|2W5T|A Chain A, Structure-Based Mechanism Of Lipoteichoic Acid Synthesis
By Staphylococcus Aureus Ltas
Length = 424
Score = 27.7 bits (60), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 25/42 (59%)
Query: 158 DLLMTKRLQTLQSVDDAVEKIVKELKDLGELNNTYIIYTSDH 199
D + +QT + +D+A+E+ + +LK G +N+ I+ DH
Sbjct: 218 DATVDGYIQTARYLDEALEEYINDLKKKGLYDNSVIMIYGDH 259
>pdb|4GTW|A Chain A, Crystal Structure Of Mouse Enpp1 In Complex With Amp
pdb|4GTW|B Chain B, Crystal Structure Of Mouse Enpp1 In Complex With Amp
Length = 823
Score = 27.3 bits (59), Expect = 8.3, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 20/40 (50%)
Query: 165 LQTLQSVDDAVEKIVKELKDLGELNNTYIIYTSDHGYHLG 204
++ LQ VD V + LKDLG +I SDHG G
Sbjct: 290 IKALQKVDRLVGXLXDGLKDLGLDKCLNLILISDHGXEQG 329
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.139 0.431
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,178,526
Number of Sequences: 62578
Number of extensions: 413788
Number of successful extensions: 1081
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1055
Number of HSP's gapped (non-prelim): 34
length of query: 271
length of database: 14,973,337
effective HSP length: 97
effective length of query: 174
effective length of database: 8,903,271
effective search space: 1549169154
effective search space used: 1549169154
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)