Query psy5200
Match_columns 271
No_of_seqs 196 out of 1442
Neff 9.4
Searched_HMMs 46136
Date Fri Aug 16 19:54:54 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5200.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5200hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3731|consensus 100.0 9.6E-50 2.1E-54 341.0 17.3 259 6-265 116-386 (541)
2 TIGR03417 chol_sulfatase choli 100.0 1E-43 2.2E-48 326.4 24.1 254 6-264 82-367 (500)
3 PRK13759 arylsulfatase; Provis 100.0 2.7E-41 5.8E-46 309.3 23.2 250 6-264 86-383 (485)
4 COG3119 AslA Arylsulfatase A a 100.0 1.3E-36 2.8E-41 277.4 17.5 247 7-255 91-361 (475)
5 PF00884 Sulfatase: Sulfatase; 100.0 3.6E-33 7.9E-38 241.4 14.6 213 7-252 84-308 (308)
6 KOG3867|consensus 100.0 5.8E-33 1.3E-37 248.5 14.8 223 7-265 119-393 (528)
7 PRK03776 phosphoglycerol trans 100.0 1.4E-29 3.1E-34 235.1 18.8 200 3-254 240-449 (762)
8 PRK09598 lipid A phosphoethano 100.0 5E-28 1.1E-32 221.2 18.1 199 6-255 293-506 (522)
9 PRK12363 phosphoglycerol trans 100.0 3.9E-27 8.4E-32 218.7 18.5 196 8-255 242-447 (703)
10 PRK11598 putative metal depend 99.9 8.7E-26 1.9E-30 207.1 18.7 158 73-258 355-532 (545)
11 PRK10649 hypothetical protein; 99.9 4.5E-26 9.7E-31 211.3 16.6 205 6-255 311-533 (577)
12 PRK11560 phosphoethanolamine t 99.9 9.7E-24 2.1E-28 193.7 20.1 149 73-255 370-541 (558)
13 COG3083 Predicted hydrolase of 99.9 5.8E-23 1.3E-27 179.6 14.5 185 8-255 331-522 (600)
14 COG1368 MdoB Phosphoglycerol t 99.8 5.4E-19 1.2E-23 167.1 12.7 199 7-255 344-555 (650)
15 PRK05362 phosphopentomutase; P 99.8 2.7E-18 5.9E-23 151.0 15.5 165 3-261 221-393 (394)
16 TIGR01307 pgm_bpd_ind 2,3-bisp 99.7 8.5E-17 1.8E-21 144.9 16.7 126 70-256 362-493 (501)
17 TIGR01696 deoB phosphopentomut 99.7 1.4E-15 3E-20 132.7 14.1 157 4-255 215-376 (381)
18 PRK12383 putative mutase; Prov 99.6 4.3E-15 9.3E-20 130.9 14.4 164 6-265 234-405 (406)
19 PRK05434 phosphoglyceromutase; 99.6 1.6E-14 3.5E-19 131.1 16.5 125 73-256 371-498 (507)
20 COG2194 Predicted membrane-ass 99.6 1.5E-14 3.2E-19 132.9 13.1 154 72-254 355-529 (555)
21 TIGR03397 acid_phos_Burk acid 99.5 4.5E-14 9.8E-19 126.5 9.2 86 166-254 363-454 (483)
22 PF02995 DUF229: Protein of un 99.3 4.9E-12 1.1E-16 116.2 10.6 179 9-255 209-409 (497)
23 PLN02538 2,3-bisphosphoglycera 99.3 9.1E-11 2E-15 106.6 16.0 131 70-258 401-551 (558)
24 COG1015 DeoB Phosphopentomutas 99.2 3E-10 6.5E-15 97.1 12.8 158 4-255 225-386 (397)
25 cd00016 alkPPc Alkaline phosph 99.1 6.4E-09 1.4E-13 92.5 17.1 124 74-252 233-384 (384)
26 PF01676 Metalloenzyme: Metall 99.1 2.3E-10 5.1E-15 96.4 7.6 86 161-258 160-249 (252)
27 KOG4513|consensus 99.0 2.2E-08 4.7E-13 85.8 13.6 88 165-260 428-526 (531)
28 COG0696 GpmI Phosphoglyceromut 98.6 1.6E-06 3.4E-11 77.2 14.1 85 165-258 412-501 (509)
29 KOG2125|consensus 98.3 1.7E-06 3.6E-11 79.9 7.0 83 166-255 218-309 (760)
30 KOG2124|consensus 98.1 7.4E-06 1.6E-10 77.4 6.7 85 164-255 222-326 (883)
31 PRK10518 alkaline phosphatase; 98.0 0.0001 2.2E-09 66.9 12.4 84 165-252 366-475 (476)
32 PRK04024 cofactor-independent 97.9 2.8E-05 6E-10 69.9 7.3 62 161-235 313-374 (412)
33 PF11658 DUF3260: Protein of u 97.9 0.00024 5.2E-09 64.1 12.0 182 4-240 265-453 (518)
34 KOG2126|consensus 97.8 5.2E-05 1.1E-09 72.0 7.2 77 167-255 234-320 (895)
35 PF01663 Phosphodiest: Type I 97.8 3.6E-05 7.7E-10 68.1 5.5 41 164-204 208-248 (365)
36 PF04185 Phosphoesterase: Phos 97.8 5.2E-05 1.1E-09 67.8 6.1 86 167-253 275-376 (376)
37 TIGR03368 cellulose_yhjU cellu 97.7 0.00085 1.8E-08 60.3 12.9 178 6-240 265-450 (518)
38 TIGR02335 hydr_PhnA phosphonoa 97.6 0.0012 2.6E-08 59.6 11.8 30 165-202 212-241 (408)
39 TIGR00306 apgM 2,3-bisphosphog 97.6 0.00026 5.6E-09 63.4 7.4 64 161-237 307-370 (396)
40 smart00098 alkPPc Alkaline pho 97.4 0.00092 2E-08 60.2 8.5 35 165-202 276-310 (419)
41 TIGR02535 hyp_Hser_kinase prop 97.1 0.0074 1.6E-07 54.2 11.2 60 165-235 308-368 (396)
42 PF00245 Alk_phosphatase: Alka 97.1 0.0022 4.8E-08 58.0 7.8 35 165-202 279-313 (421)
43 COG3635 Predicted phosphoglyce 97.0 0.0054 1.2E-07 53.5 9.4 70 165-251 320-407 (408)
44 KOG2645|consensus 97.0 0.0011 2.4E-08 59.4 4.7 39 165-203 200-238 (418)
45 PRK04200 cofactor-independent 96.8 0.014 3.1E-07 52.4 10.7 60 165-236 307-367 (395)
46 TIGR03396 PC_PLC phospholipase 96.8 0.0049 1.1E-07 58.8 7.8 91 166-257 304-431 (690)
47 PF07394 DUF1501: Protein of u 96.7 0.0082 1.8E-07 54.0 8.4 88 163-255 265-368 (392)
48 COG1785 PhoA Alkaline phosphat 96.4 0.019 4E-07 52.2 8.5 34 165-201 322-355 (482)
49 PRK04135 cofactor-independent 96.4 0.007 1.5E-07 53.9 5.8 53 165-233 303-355 (395)
50 COG1524 Uncharacterized protei 96.4 0.0046 1E-07 56.7 4.7 40 163-202 241-280 (450)
51 KOG4126|consensus 94.5 0.26 5.7E-06 44.9 8.7 35 165-203 367-401 (529)
52 PF08665 PglZ: PglZ domain; I 88.8 0.68 1.5E-05 36.9 4.2 25 174-202 151-175 (181)
53 COG3379 Uncharacterized conser 87.4 0.65 1.4E-05 41.3 3.4 30 169-202 236-265 (471)
54 cd07366 3MGA_Dioxygenase Subun 82.3 5.1 0.00011 35.2 6.7 31 173-205 73-103 (328)
55 TIGR02687 conserved hypothetic 76.3 4.6 0.0001 40.2 5.1 34 164-203 597-630 (844)
56 COG4102 Uncharacterized protei 74.2 26 0.00057 30.8 8.4 36 168-203 292-328 (418)
57 PF05991 NYN_YacP: YacP-like N 67.5 5.3 0.00012 31.3 2.7 31 169-202 77-107 (166)
58 cd07364 PCA_45_Dioxygenase_B S 62.2 15 0.00032 31.5 4.6 35 169-205 31-65 (277)
59 PRK13363 protocatechuate 4,5-d 59.7 56 0.0012 28.8 7.9 30 173-204 75-104 (335)
60 PRK13366 protocatechuate 4,5-d 59.4 16 0.00035 31.4 4.4 35 169-205 31-65 (284)
61 PRK13364 protocatechuate 4,5-d 53.7 20 0.00043 30.8 4.0 33 169-203 31-63 (278)
62 cd07950 Gallate_Doxase_N The N 52.0 22 0.00047 30.5 4.0 33 170-204 32-64 (277)
63 COG3379 Uncharacterized conser 48.6 23 0.00051 31.9 3.7 24 232-256 435-458 (471)
64 cd07369 PydA_Rs_like PydA is a 48.2 34 0.00073 30.1 4.7 32 169-202 29-60 (329)
65 cd07368 PhnC_Bs_like PhnC is a 48.1 30 0.00064 29.6 4.2 31 173-205 33-63 (277)
66 PRK13365 protocatechuate 4,5-d 47.2 25 0.00055 30.1 3.7 32 170-203 32-63 (279)
67 cd07949 PCA_45_Doxase_B_like_1 46.0 26 0.00057 29.9 3.6 32 170-203 32-63 (276)
68 PF04852 DUF640: Protein of un 45.9 59 0.0013 24.3 4.8 22 169-190 92-113 (132)
69 PF00231 ATP-synt: ATP synthas 44.7 34 0.00073 29.4 4.1 18 186-203 72-89 (290)
70 PF03540 TFIID_30kDa: Transcri 42.8 21 0.00046 22.0 1.8 19 1-19 1-19 (51)
71 COG3885 Uncharacterized conser 42.6 71 0.0015 26.5 5.3 37 168-209 146-182 (261)
72 COG0056 AtpA F0F1-type ATP syn 41.0 31 0.00068 31.5 3.4 29 172-200 202-232 (504)
73 PF12646 DUF3783: Domain of un 39.8 67 0.0014 20.2 3.9 29 171-200 10-38 (58)
74 PRK05621 F0F1 ATP synthase sub 38.7 58 0.0013 27.9 4.6 12 192-203 77-88 (284)
75 TIGR02049 gshA_ferroox glutama 37.1 83 0.0018 28.1 5.2 37 166-202 233-269 (403)
76 TIGR01146 ATPsyn_F1gamma ATP s 34.9 77 0.0017 27.2 4.8 12 192-203 78-89 (287)
77 PRK13427 F0F1 ATP synthase sub 33.8 84 0.0018 27.1 4.8 13 192-204 79-91 (289)
78 PRK13373 putative dioxygenase; 32.5 95 0.0021 27.5 4.9 35 170-206 30-64 (344)
79 cd07367 CarBb CarBb is the B s 32.3 74 0.0016 27.0 4.2 29 174-204 30-58 (268)
80 PHA02754 hypothetical protein; 32.1 1.3E+02 0.0029 18.9 4.2 27 173-199 18-54 (67)
81 PF02739 5_3_exonuc_N: 5'-3' e 31.3 82 0.0018 24.7 4.0 30 170-202 109-138 (169)
82 cd00016 alkPPc Alkaline phosph 30.9 38 0.00082 30.5 2.3 24 4-27 97-120 (384)
83 cd07359 PCA_45_Doxase_B_like S 30.6 1.2E+02 0.0025 25.7 5.2 16 188-203 44-59 (271)
84 PF12281 DUF3620: Protein of u 30.6 39 0.00084 27.8 2.2 25 172-196 1-25 (217)
85 PRK14111 F0F1 ATP synthase sub 30.1 36 0.00078 29.3 2.0 15 190-204 78-93 (290)
86 PRK13423 F0F1 ATP synthase sub 30.1 92 0.002 26.8 4.5 12 192-203 78-89 (288)
87 PF14871 GHL6: Hypothetical gl 30.1 67 0.0015 24.1 3.2 25 176-202 3-27 (132)
88 PRK13425 F0F1 ATP synthase sub 29.5 1.2E+02 0.0025 26.2 5.0 13 192-204 79-91 (291)
89 PRK13424 F0F1 ATP synthase sub 29.1 1E+02 0.0022 26.5 4.6 12 192-203 79-90 (291)
90 smart00187 INB Integrin beta s 28.7 78 0.0017 28.8 3.9 33 175-207 210-247 (423)
91 TIGR03323 alt_F1F0_F1_gam alte 28.4 1.2E+02 0.0026 26.1 4.8 13 192-204 74-86 (285)
92 PRK13422 F0F1 ATP synthase sub 26.5 1E+02 0.0022 26.7 4.1 13 192-204 78-90 (298)
93 PF08886 GshA: Glutamate-cyste 26.4 98 0.0021 27.8 3.9 37 166-202 236-272 (404)
94 PF14556 AF2331-like: AF2331-l 26.3 75 0.0016 21.6 2.5 23 178-201 11-33 (93)
95 COG0279 GmhA Phosphoheptose is 25.8 92 0.002 24.5 3.3 24 178-201 125-148 (176)
96 PF05762 VWA_CoxE: VWA domain 24.8 92 0.002 25.5 3.4 28 170-198 131-158 (222)
97 PF14104 DUF4277: Domain of un 24.0 64 0.0014 23.6 2.1 19 169-187 87-105 (115)
98 PRK13370 mhpB 3-(2,3-dihydroxy 23.9 1.8E+02 0.0038 25.5 5.1 33 170-204 26-58 (313)
99 PF10673 DUF2487: Protein of u 23.2 1.2E+02 0.0026 23.1 3.5 29 172-202 70-98 (142)
100 PF15656 Tox-HDC: Toxin with a 22.5 1.4E+02 0.003 22.1 3.5 31 175-205 14-45 (119)
101 COG1355 Predicted dioxygenase 22.4 1.5E+02 0.0033 25.3 4.2 30 169-200 164-193 (279)
102 COG2897 SseA Rhodanese-related 22.2 1.1E+02 0.0024 26.4 3.4 26 177-202 77-102 (285)
103 cd07361 MEMO_like Memo (mediat 22.1 1.1E+02 0.0024 25.8 3.5 26 173-201 157-182 (266)
104 PF00702 Hydrolase: haloacid d 22.1 87 0.0019 24.7 2.8 26 174-202 131-156 (215)
105 PRK00105 cobT nicotinate-nucle 22.0 75 0.0016 28.1 2.5 16 187-202 44-59 (335)
106 smart00470 ParB ParB-like nucl 21.6 1E+02 0.0022 20.8 2.7 54 171-229 19-75 (89)
107 PF05402 PqqD: Coenzyme PQQ sy 21.4 2E+02 0.0044 18.1 4.0 35 154-188 33-67 (68)
108 TIGR03160 cobT_DBIPRT nicotina 21.3 70 0.0015 28.2 2.1 16 187-202 43-58 (333)
109 smart00481 POLIIIAc DNA polyme 21.2 1.5E+02 0.0033 18.7 3.3 26 175-204 17-42 (67)
110 COG4077 Uncharacterized protei 20.5 1.3E+02 0.0027 22.7 3.0 28 165-192 76-103 (156)
111 KOG1976|consensus 20.5 1.2E+02 0.0027 26.3 3.3 31 172-203 200-230 (391)
112 PF04666 Glyco_transf_54: N-Ac 20.4 79 0.0017 27.4 2.2 33 169-201 67-99 (297)
113 PF01650 Peptidase_C13: Peptid 20.1 69 0.0015 27.1 1.8 12 189-200 106-117 (256)
No 1
>KOG3731|consensus
Probab=100.00 E-value=9.6e-50 Score=340.95 Aligned_cols=259 Identities=55% Similarity=0.969 Sum_probs=240.7
Q ss_pred hhh-HHHHHhCCCceEEecccccCCCCCCCCCCCccccccccCcccCcceeccCCeeeccCCCCCCCCChHHHHHHHHHH
Q psy5200 6 ELT-SRNLLYFDISHGYFGKYLNKYNGSYIPPGWREWGALIMNSKYYNYSINMNGRKIKHGEDYYNDYYPDLIANDSVRF 84 (271)
Q Consensus 6 ~~~-~~~Lk~~GY~T~~~Gk~h~~~~~~~~p~Gfd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 84 (271)
++. +.+..++||+|+++||.-+..++++.|.||++|.+....+.||++..+.||....+|+++..+|.+|.++...+.|
T Consensus 116 ~t~~~~l~~~~GYrT~~~GKylney~gsyiPpgW~ew~~l~knskfyNytv~~Ng~~~khg~~y~kdyltDlitn~s~~f 195 (541)
T KOG3731|consen 116 RTFAVYLAIDQGYRTAFFGKYLNEYNGSYIPPGWSEWAGLIKNSKFYNYTVCKNGIKEKHGSDYSKDYLTDLITNDSLLF 195 (541)
T ss_pred CchhhhhhhhhceeeecchhhccccCcccCCCCchhhhccccccchhcchhhcCccccccccccchhhhchhhhhhhHHH
Confidence 344 4555569999999999988889999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcCCCCCCeEEEecCCCCCCCCCCChHHHhhcCCCCCCCCCCCCCCCCCChhHHHhhhhccCcccHHHHHHHHHHH
Q psy5200 85 LRQSKQSFSKKPIMLVMSFPAPHGPEDSAPQYANMFFNVTSHHTPAYDYAPNPDKQWILQVTRKMQPVHRQFTDLLMTKR 164 (271)
Q Consensus 85 l~~~~~~~~~~Pffl~~~~~~pH~p~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 164 (271)
++..+++.+.+|||+.++|.+||.|++.+++|..+|.+...+..|++...|.+.+.|.++...++..++-.+.....++.
T Consensus 196 f~~s~~~~~~~Pf~l~is~~aPHgped~apQf~~~F~n~~~h~t~s~n~aPnpdk~W~~~~t~pm~~ih~~ft~~l~rkr 275 (541)
T KOG3731|consen 196 FDGSKKRHSQEPFFLAISFPAPHGPEDSAPQFSHLFNNVQFHRTPSYNLAPNPDKHWILRTTGPMSNIHIPFTNILPRKR 275 (541)
T ss_pred HhhccccccCCCeEEEeccCCCCCCCCccHHHHHhccccccccCcccccCCCCccceeeeeccCCCccccccccchHHHH
Confidence 99877767789999999999999999999999999999999999999999999999999999999999888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCEEEEEEcCCCccccccccCCCCCCCCCCCceeeEEEEcCCCCCCeee-----ee
Q psy5200 165 LQTLQSVDDAVEKIVKELKDLGELNNTYIIYTSDHGYHLGQFGLVKGKSFPFEFDIRVPFLMRGPGIVPGTMY-----LL 239 (271)
Q Consensus 165 ~~~v~~~D~~iG~ll~~L~~~g~~~nTivv~tsDHG~~~g~h~~~~~k~~~~e~~~~VPlii~~P~~~~g~~~-----~~ 239 (271)
+....-+|+.|.++.+.|.++|.++||+||+|||||.++|+||++.+|...||-.+||||+|++|||+++.++ ++
T Consensus 276 lQtlqSvd~sve~l~n~l~elgeLdnTyivytsDhGyhlGqfgl~kgks~pyEfdiRVPf~iRgP~v~~~~~~~~Iv~ni 355 (541)
T KOG3731|consen 276 LQTLQSVDDSVERLYNLLGELGELDNTYIVYTSDHGYHLGQFGLWKGKSMPYEFDIRVPFLIRGPGVAPNKTVNEIVLNI 355 (541)
T ss_pred HHHHHhHHHHHHHHHHHHHHhhcccceEEEEEcCCcccccccccccCCCCceeEeeeeeEEeeCCCCCccccchhhheec
Confidence 9999999999999999999999999999999999999999999998888889999999999999999887754 99
Q ss_pred ecchhHHHHhcCCCcc------chhhhhhccc
Q psy5200 240 DVLIPQVRKFSSGSLI------FIMSFLINLN 265 (271)
Q Consensus 240 Di~~PTll~lag~~~~------~l~~~l~~~~ 265 (271)
||+ |||||+||++.+ ||+++|...+
T Consensus 356 Dla-PTilDiAGlp~p~~mdg~sll~ll~~~~ 386 (541)
T KOG3731|consen 356 DLA-PTILDIAGLPKPACMDGRSLLPLLGKSK 386 (541)
T ss_pred ccc-chhhhhcCCCCcccccccchhhhhccch
Confidence 996 999999999988 7777776544
No 2
>TIGR03417 chol_sulfatase choline-sulfatase.
Probab=100.00 E-value=1e-43 Score=326.35 Aligned_cols=254 Identities=19% Similarity=0.235 Sum_probs=176.4
Q ss_pred hhhHHHHHhCCCceEEecccccCCCCCCCCCCCccccccc------cC-cccCcc----eeccC-CeeeccCCC--CCCC
Q psy5200 6 ELTSRNLLYFDISHGYFGKYLNKYNGSYIPPGWREWGALI------MN-SKYYNY----SINMN-GRKIKHGED--YYND 71 (271)
Q Consensus 6 ~~~~~~Lk~~GY~T~~~Gk~h~~~~~~~~p~Gfd~~~~~~------~~-~~~~~~----~~~~~-~~~~~~~~~--~~~~ 71 (271)
.|++++|+++||+|+++||||+.... ..+||+++.... +. .+|... .+..+ ......|.. ....
T Consensus 82 ~tl~~~L~~aGY~T~~~GK~H~~~~~--~~~GF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 159 (500)
T TIGR03417 82 PTYAHYLRRAGYRTALSGKMHFCGPD--QLHGFEERLTTDIYPADFGWTPDWRKPGERIDWYHNMGSVTGAGPCERTNQL 159 (500)
T ss_pred CCHHHHHHHCCCeEEEeccccccCCc--cccCcccccccccCccccCCCcccccccccccccccccccccCCcCcccccc
Confidence 35799999999999999999985322 246888754211 00 011000 00000 000001110 0111
Q ss_pred CChHHHHHHHHHHHHhhhcCCCCCCeEEEecCCCCCCCCCCChHHHhhcCCCCCCCCCCCCCCCCCChhHHHhh----hh
Q psy5200 72 YYPDLIANDSVRFLRQSKQSFSKKPIMLVMSFPAPHGPEDSAPQYANMFFNVTSHHTPAYDYAPNPDKQWILQV----TR 147 (271)
Q Consensus 72 ~~~~~~~~~a~~~l~~~~~~~~~~Pffl~~~~~~pH~p~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~----~~ 147 (271)
..++.+++.+++||.+..+++.++||||++++..||.||.+|++|.++|.+...+.+.. ........+..... ..
T Consensus 160 ~~~~~~~~~a~~~l~~~~~~~~~kPFFl~vs~~~PH~P~~~p~~y~~~y~~~~~~~p~~-~~~~~~~~~~~~~~~~~~~~ 238 (500)
T TIGR03417 160 DYDDEVAFHARQKLYDLARGKDARPFCLTVSFTHPHDPYVIRRKYWDLYEDCEILMPEV-AIPYAEQDPHSQRLLDACDL 238 (500)
T ss_pred cCCHHHHHHHHHHHHHHhhccCCCCeEEEecCCCCcCCCcCCHHHHhhcCcccCCCCCC-CCcccccChhhhhhhhhhcc
Confidence 23457889999999764222457999999999999999999999999998776554321 11111111111110 00
Q ss_pred ccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCEEEEEEcCCCccccccccCCCCCCCCCCCceeeEEEE
Q psy5200 148 KMQPVHRQFTDLLMTKRLQTLQSVDDAVEKIVKELKDLGELNNTYIIYTSDHGYHLGQFGLVKGKSFPFEFDIRVPFLMR 227 (271)
Q Consensus 148 ~~~~~~~~~~~~~~~~y~~~v~~~D~~iG~ll~~L~~~g~~~nTivv~tsDHG~~~g~h~~~~~k~~~~e~~~~VPlii~ 227 (271)
.......+..+..++.|+++|+++|++||+||++|++.|++||||||||||||+++|+||+++ |.++||+++||||||+
T Consensus 239 ~~~~~~~~~~~~~~~~Y~~~v~~~D~~iG~il~~L~~~g~~dnTivvf~sDHG~~~G~~g~~~-K~~~ye~~~~vPlii~ 317 (500)
T TIGR03417 239 WNFPITDEQIRRARRAYFGAISYLDDKIGELLQTLEETRQADDTIVLFTSDHGDMLGERGLWY-KMSFFEGSARVPLMVH 317 (500)
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCcEEEEECCCchhhccCCccc-ccCcccccceEeEEEE
Confidence 111223455667788999999999999999999999999999999999999999999999985 7899999999999999
Q ss_pred cCC-CCCCe----eeeeecchhHHHHhcCCCcc---------chhhhhhcc
Q psy5200 228 GPG-IVPGT----MYLLDVLIPQVRKFSSGSLI---------FIMSFLINL 264 (271)
Q Consensus 228 ~P~-~~~g~----~~~~Di~~PTll~lag~~~~---------~l~~~l~~~ 264 (271)
+|+ +++++ ++++||+ ||||+++|++.+ ||.|+|.|.
T Consensus 318 ~p~~~~~~~~~~~v~~~Di~-pTil~l~g~~~~~~~~~~~G~SL~~~l~g~ 367 (500)
T TIGR03417 318 APGRFAPGRVAAPVSTVDLL-PTLVDLAGGDMDEVLPWTDGRSLVPHLQGK 367 (500)
T ss_pred eCCCCCCcccCCceeehhHH-HHHHHHhCCCCcccCCCCCCeehHHHhcCC
Confidence 999 54443 4599997 999999999854 788888764
No 3
>PRK13759 arylsulfatase; Provisional
Probab=100.00 E-value=2.7e-41 Score=309.33 Aligned_cols=250 Identities=21% Similarity=0.344 Sum_probs=173.8
Q ss_pred hhhHHHHHhCCCceEEecccccCCCCCCCCCCCcccccccc---Cc------------ccCccee-ccCC---eeeccCC
Q psy5200 6 ELTSRNLLYFDISHGYFGKYLNKYNGSYIPPGWREWGALIM---NS------------KYYNYSI-NMNG---RKIKHGE 66 (271)
Q Consensus 6 ~~~~~~Lk~~GY~T~~~Gk~h~~~~~~~~p~Gfd~~~~~~~---~~------------~~~~~~~-~~~~---~~~~~~~ 66 (271)
.++++.|+++||+|+++||||.+... ...||+++....+ .. +|..+.. ...+ .....+.
T Consensus 86 ~tl~~~l~~~GY~T~~~GK~h~~~~~--~~~gfd~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (485)
T PRK13759 86 NTLPQEFRDAGYYTQCIGKMHVFPQR--NLLGFHNVLLHDGYLHSGRNEDKSQFDFVSDYLAWLREKAPGKDPDLTDIGW 163 (485)
T ss_pred chHHHHHHHcCCeeEEecccccCCCc--ccCCccceeccccccccccccCcccccccchHHHHhhhhcCCCCCccccccc
Confidence 35799999999999999999985321 2357876531100 00 0000000 0000 0000000
Q ss_pred ----------C-CCCCCChHHHHHHHHHHHHhhhcCCCCCCeEEEecCCCCCCCCCCChHHHhhcCCCCCCCCCCCCCCC
Q psy5200 67 ----------D-YYNDYYPDLIANDSVRFLRQSKQSFSKKPIMLVMSFPAPHGPEDSAPQYANMFFNVTSHHTPAYDYAP 135 (271)
Q Consensus 67 ----------~-~~~~~~~~~~~~~a~~~l~~~~~~~~~~Pffl~~~~~~pH~p~~~p~~~~~~~~~~~~~~~p~~~~~~ 135 (271)
. ....+.+..++++|++||+++. .++||||++++..||.||.+|++|.++|.+...+.+....+..
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~---~~kPfFl~v~~~~pH~P~~~p~~~~~~y~~~~~~~p~~~~~~~ 240 (485)
T PRK13759 164 DCNSWVARPWDLEERLHPTNWVGSESIEFLRRRD---PTKPFFLKMSFARPHSPYDPPKRYFDMYKDADIPDPHIGDWEY 240 (485)
T ss_pred ccccccccccccccceeccHHHHHHHHHHHHhCC---CCCCeEEEeCCCCCcCCCCCCHHHHHhccccCCCCCCCCchhh
Confidence 0 0122346678999999999743 3799999999999999999999999999876544322111100
Q ss_pred CCCh---hHHHhhhhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCEEEEEEcCCCccccccccCCCC
Q psy5200 136 NPDK---QWILQVTRKMQPVHRQFTDLLMTKRLQTLQSVDDAVEKIVKELKDLGELNNTYIIYTSDHGYHLGQFGLVKGK 212 (271)
Q Consensus 136 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~y~~~v~~~D~~iG~ll~~L~~~g~~~nTivv~tsDHG~~~g~h~~~~~k 212 (271)
.+.. .+... ........+..++.++.|+++|+++|++||+||++|++.|+++||||||+||||+.+|+|+.++ |
T Consensus 241 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~Y~~~i~~~D~~iG~l~~~l~~~g~~dnTiiv~tsDHG~~~g~~~~~~-k 317 (485)
T PRK13759 241 AEDQDPEGGSID--ALRGNLGEEYARRARAAYYGLITHIDHQIGRFLQALKEFGLLDNTIILFVSDHGDMLGDHYLFR-K 317 (485)
T ss_pred hcccccccccch--hhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCeEEEEECCCccccccccccc-C
Confidence 0000 00000 0001223445667789999999999999999999999999999999999999999999999884 7
Q ss_pred CCCCCCCceeeEEEEcCCC----CCCe-----eeeeecchhHHHHhcCCCcc------chhhhhhcc
Q psy5200 213 SFPFEFDIRVPFLMRGPGI----VPGT-----MYLLDVLIPQVRKFSSGSLI------FIMSFLINL 264 (271)
Q Consensus 213 ~~~~e~~~~VPlii~~P~~----~~g~-----~~~~Di~~PTll~lag~~~~------~l~~~l~~~ 264 (271)
..+||+++||||||++|+. ++|+ ++++||+ ||||+++|++.+ ||.|+|.|.
T Consensus 318 ~~~~e~~~rVPlii~~p~~~~~~~~g~~~~~~v~~~Di~-pTil~l~g~~~p~~~~G~sl~~~l~g~ 383 (485)
T PRK13759 318 GYPYEGSAHIPFIIYDPGGLLAGNRGTVIDQVVELRDIM-PTLLDLAGGTIPDDVDGRSLKNLIFGQ 383 (485)
T ss_pred CccccccceeeEEEecCCcccccCCCceecCcceecchH-HHHHHHhCCCCCcCcCCccchhhhcCC
Confidence 7889999999999999982 3443 4599997 999999999876 899999874
No 4
>COG3119 AslA Arylsulfatase A and related enzymes [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.3e-36 Score=277.42 Aligned_cols=247 Identities=24% Similarity=0.338 Sum_probs=156.5
Q ss_pred hhHHHHHhCCCceEEecccccCCCCCCCC----CCCccccccccCc--ccCcceeccCCeeeccCCCCCCC---CChHHH
Q psy5200 7 LTSRNLLYFDISHGYFGKYLNKYNGSYIP----PGWREWGALIMNS--KYYNYSINMNGRKIKHGEDYYND---YYPDLI 77 (271)
Q Consensus 7 ~~~~~Lk~~GY~T~~~Gk~h~~~~~~~~p----~Gfd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 77 (271)
|++++||++||+|+++||||++.... .| .||+++.+..... ..+..............+..... ..-...
T Consensus 91 Tla~~Lk~~GY~Ta~~GKwHl~~~~~-~p~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (475)
T COG3119 91 TLAELLKEAGYYTALFGKWHLGEKDE-DPAGGDHGFDEFYGFLGGLTDEWYPELVDVPPPGDVPEFDQEEGDPYVAGKDS 169 (475)
T ss_pred hHHHHHHHcCChhhhcccccCCCCcc-CccccccccccccccccccccccccccccCCCCcCccccccccCchhhhcchh
Confidence 36999999999999999999986533 23 6788766543321 11110000000000001111111 112234
Q ss_pred HHHHHHHHHhhhcCCCCCCeEEEecCCCCCCCCCCChHH----HhhcCCCCCCCCCCCCCCCCCChhHHHhh--hhccCc
Q psy5200 78 ANDSVRFLRQSKQSFSKKPIMLVMSFPAPHGPEDSAPQY----ANMFFNVTSHHTPAYDYAPNPDKQWILQV--TRKMQP 151 (271)
Q Consensus 78 ~~~a~~~l~~~~~~~~~~Pffl~~~~~~pH~p~~~p~~~----~~~~~~~~~~~~p~~~~~~~~~~~~~~~~--~~~~~~ 151 (271)
.+.++++.+..+....++|+|++......|.|...+.++ ...|+.......+................ ......
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (475)
T COG3119 170 ADLADRFRRQAKEDAPDKPPFLLTAPFAPPAPDPVDFEWPDEYRGFYDRAKRLDRPFFLYLAPPDPHLSRRLPAADGLPA 249 (475)
T ss_pred hhhhhhhhhhcccccccCCceEEecCCCCCCCCcccchhhHHHhhhcchhhcccCccccccCCCccCccccCccchhccc
Confidence 455555555544445678999999999999886655544 44444222211121111100000000000 011223
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCEEEEEEcCCCccccccc--cCCCCCCCCCCCceeeEEEEcC
Q psy5200 152 VHRQFTDLLMTKRLQTLQSVDDAVEKIVKELKDLGELNNTYIIYTSDHGYHLGQFG--LVKGKSFPFEFDIRVPFLMRGP 229 (271)
Q Consensus 152 ~~~~~~~~~~~~y~~~v~~~D~~iG~ll~~L~~~g~~~nTivv~tsDHG~~~g~h~--~~~~k~~~~e~~~~VPlii~~P 229 (271)
...+...+.+..|+++|+++|++|||||++|++.|++||||||||||||..+|.|+ ..+.|.++||+++||||||+||
T Consensus 250 ~~~~~~~~~~~~Y~a~v~~~D~~iGrll~~L~~~g~~DnTivvftsDhG~~~~~~~~~~~~~k~~~~egg~~VPliI~~P 329 (475)
T COG3119 250 EEEEDGARLMTVYAACVRYLDDQIGRLLDALKELGLLDNTIVVFTSDHGAWLGAHGTPFRGYKGTLYEGGTRVPLIIRWP 329 (475)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCccCcEEEEeCCCCCcccCCCCcccccccccccCcccceEEEecc
Confidence 34566778899999999999999999999999999999999999999998777543 3345668999999999999999
Q ss_pred C-CCC-Cee-----eeeecchhHHHHhcCCCcc
Q psy5200 230 G-IVP-GTM-----YLLDVLIPQVRKFSSGSLI 255 (271)
Q Consensus 230 ~-~~~-g~~-----~~~Di~~PTll~lag~~~~ 255 (271)
| +++ +.+ +++||+ ||||+++|++.+
T Consensus 330 g~i~~~g~~~~~~v~~~Di~-PTll~~aG~~~~ 361 (475)
T COG3119 330 GGIKPGGRVVDALVSLIDLL-PTLLDAAGVPPP 361 (475)
T ss_pred CccCCCCccccccchhhHHH-HHHHHHcCCCCc
Confidence 9 443 443 379997 999999999887
No 5
>PF00884 Sulfatase: Sulfatase; InterPro: IPR000917 Sulphatases 3.1.6. from EC are enzymes that hydrolyze various sulphate esters. The sequence of different types of sulphatases are available and have shown to be structurally related [, , ]; these include: arylsulphatase A 3.1.6.8 from EC (ASA), a lysosomal enzyme which hydrolyses cerebroside sulphate; arylsulphatase B 3.1.6.12 from EC (ASB), which hydrolyses the sulphate ester group from N-acetylgalactosamine 4-sulphate residues of dermatan sulphate; arylsulphatase C (ASD) and E (ASE); steryl-sulphatase 3.1.6.2 from EC (STS), a membrane bound microsomal enzyme which hydrolyses 3-beta-hydroxy steroid sulphates; iduronate 2-sulphatase precursor 3.1.6.13 from EC (IDS), a lysosomal enzyme that hydrolyses the 2-sulphate groups from non-reducing-terminal iduronic acid residues in dermatan sulphate and heparan sulphate; N-acetylgalactosamine-6-sulphatase 3.1.6.4 from EC, which hydrolyses the 6-sulphate groups of the N-acetyl-d-galactosamine 6-sulphate units of chondroitin sulphate and the D-galactose 6-sulphate units of keratan sulphate; glucosamine-6-sulphatase 3.1.6.14 from EC (G6S), which hydrolyses the N-acetyl-D-glucosamine 6-sulphate units of heparan sulphate and keratan sulphate; N-sulphoglucosamine sulphohydrolase 3.10.1.1 from EC (sulphamidase), the lysosomal enzyme that catalyses the hydrolysis of N-sulpho-d-glucosamine into glucosamine and sulphate; sea urchin embryo arylsulphatase 3.1.6.1 from EC; green algae arylsulphatase 3.1.6.1 from EC, which plays an important role in the mineralisation of sulphates; and arylsulphatase 3.1.6.1 from EC from Escherichia coli (aslA), Klebsiella aerogenes (gene atsA) and Pseudomonas aeruginosa (gene atsA). ; GO: 0008484 sulfuric ester hydrolase activity, 0008152 metabolic process; PDB: 1P49_A 1FSU_A 2QZU_A 2W5Q_A 2W5T_A 2W5S_A 2W5R_A 3LXQ_A 1HDH_B 1E33_P ....
Probab=100.00 E-value=3.6e-33 Score=241.36 Aligned_cols=213 Identities=22% Similarity=0.306 Sum_probs=150.5
Q ss_pred hhHHHHHhCCCceEEecccccCCCCCCC---CCCCccccccccCcccCcceeccCCeeecc-CCCCCCCCChHHHHHHHH
Q psy5200 7 LTSRNLLYFDISHGYFGKYLNKYNGSYI---PPGWREWGALIMNSKYYNYSINMNGRKIKH-GEDYYNDYYPDLIANDSV 82 (271)
Q Consensus 7 ~~~~~Lk~~GY~T~~~Gk~h~~~~~~~~---p~Gfd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~a~ 82 (271)
++++.|+++||+|.++++++..+..... -.|||++.+............. ...... .......+.++.+++.++
T Consensus 84 ~l~~~l~~~GY~t~~~~~~~~~~~~~~~~~~~~gfd~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~d~~~~~~~~ 161 (308)
T PF00884_consen 84 SLPDLLKKAGYRTSFFGPWDASFYNNQAFYPSHGFDYFLGQPGLSDRIDNPRI--SGPFNDVNRSNEWGYSDDALFDYAI 161 (308)
T ss_dssp -HHHHHHHTT-EEEEEEES-STGGGHHCHCHHTT-SEEEEESSSGGGTTSSTT--EEECTTTTESTTTCEHHHHHHHHHH
T ss_pred ccHHHHhhcccccceeeccccCccccccccccCCcceEEeeeccccccccccc--ccccccccccccccccchhhhhhhh
Confidence 4699999999999999999865433222 2689987763222111111000 000000 001134566889999999
Q ss_pred HHHHhhhcCCCCCCeEEEecCCCCCCCCCCChHHHhhcCCCCCCCCCCCCCCCCCChhHHHhhhhccCcccHHHHHHHHH
Q psy5200 83 RFLRQSKQSFSKKPIMLVMSFPAPHGPEDSAPQYANMFFNVTSHHTPAYDYAPNPDKQWILQVTRKMQPVHRQFTDLLMT 162 (271)
Q Consensus 83 ~~l~~~~~~~~~~Pffl~~~~~~pH~p~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (271)
++|.+. .++|||+++.+..+|.||..++++...+..... .........++
T Consensus 162 ~~l~~~----~~~p~f~~~~~~~~H~P~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~ 211 (308)
T PF00884_consen 162 DFLLNE----DDKPFFLFIHTMGPHGPYPYPPDYAEKFPKFSP--------------------------DIPDKDREMRN 211 (308)
T ss_dssp HHHHCT----TTSSEEEEEEE-TTSSSTCTTCCHHHGGTTCSS--------------------------CHHHHHHHHHH
T ss_pred hhhhhc----ccccceeEEeecccccccccccccccccccccc--------------------------ccccchhhhHH
Confidence 999322 289999999999999999988888776643210 00111226788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCEEEEEEcCCCccccc--cccCCCCC-CCCCCCceeeEEEEcCCCCCCe----
Q psy5200 163 KRLQTLQSVDDAVEKIVKELKDLGELNNTYIIYTSDHGYHLGQ--FGLVKGKS-FPFEFDIRVPFLMRGPGIVPGT---- 235 (271)
Q Consensus 163 ~y~~~v~~~D~~iG~ll~~L~~~g~~~nTivv~tsDHG~~~g~--h~~~~~k~-~~~e~~~~VPlii~~P~~~~g~---- 235 (271)
.|+++|.++|++||++++.|++.|+.+||+||++||||..+++ +.....+. ..+++.+||||||++|+..+.+
T Consensus 212 ~Y~~~i~~~D~~l~~~~~~l~~~~~~d~TiiiitsDHG~~~~e~~~~~~~~~~~~~~~~~~~vP~~i~~p~~~~~~~~~~ 291 (308)
T PF00884_consen 212 NYLNAIAYVDDQLGRFIEYLKEQGLYDNTIIIITSDHGESFGENGHYFHGGKGNDLYEESYHVPLIIYWPGGEPQQTIDR 291 (308)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCGGGEEEEEEESSSSSTGGHHTTSSSSTTHSSSHHHHBEEEEEECTTSSSCEEECS
T ss_pred HHHHHHHHHHHHhhhhhhhhhhcCCcccceeEEecCcCcccccccccccccccccchhhccccceEEEcCCCCCCcEECC
Confidence 9999999999999999999999999999999999999999977 44444455 7899999999999999965542
Q ss_pred -eeeeecchhHHHHhcCC
Q psy5200 236 -MYLLDVLIPQVRKFSSG 252 (271)
Q Consensus 236 -~~~~Di~~PTll~lag~ 252 (271)
++++||+ ||||+++||
T Consensus 292 ~~s~~Di~-pTll~l~Gi 308 (308)
T PF00884_consen 292 LVSHIDIA-PTLLDLLGI 308 (308)
T ss_dssp -EEGGGHH-HHHHHHTT-
T ss_pred eEEhHHHH-HHHHHHhCC
Confidence 4599997 999999997
No 6
>KOG3867|consensus
Probab=100.00 E-value=5.8e-33 Score=248.49 Aligned_cols=223 Identities=23% Similarity=0.229 Sum_probs=161.6
Q ss_pred hhHHHHHhCCCceEEecccccC-CCCCCCC--CCCccccccccC-------cccCcceecc-----CCeeeccC------
Q psy5200 7 LTSRNLLYFDISHGYFGKYLNK-YNGSYIP--PGWREWGALIMN-------SKYYNYSINM-----NGRKIKHG------ 65 (271)
Q Consensus 7 ~~~~~Lk~~GY~T~~~Gk~h~~-~~~~~~p--~Gfd~~~~~~~~-------~~~~~~~~~~-----~~~~~~~~------ 65 (271)
+++++|+++||+|++|||||+| ....+.| +|||+++++... .+++...... .......+
T Consensus 119 tlae~l~~~GY~T~liGKWHLG~~~~~~~P~~rGFd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (528)
T KOG3867|consen 119 TLAEILQEAGYSTGLIGKWHLGRSDPCYHPTNRGFDYFYGEPELHSPLLGPRDVLDVPEQALQFLGKLKVSAKPFFLREG 198 (528)
T ss_pred HHHHHHHhCCccccccccccCCCCCCCcCCcccCccccccccccccccccccccccccchhhhhhcccCccccchhhhhh
Confidence 3599999999999999999999 5566667 699999998311 1111111100 00000011
Q ss_pred ----CCCCCCCChHHHHHHHHHHHHhhhcCCCCCCeEEEecCCCCCCCCCC-----ChHHHhhcCCCCCCCCCCCCCCCC
Q psy5200 66 ----EDYYNDYYPDLIANDSVRFLRQSKQSFSKKPIMLVMSFPAPHGPEDS-----APQYANMFFNVTSHHTPAYDYAPN 136 (271)
Q Consensus 66 ----~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~Pffl~~~~~~pH~p~~~-----p~~~~~~~~~~~~~~~p~~~~~~~ 136 (271)
.....-+.+..+.+.++..++++. ..++|+|++......|.+... +.++..
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~P~~l~~~~~~~~~~~~~~~l~v~~p~~~------------------ 258 (528)
T KOG3867|consen 199 LHVPHRPGWYSSTGLPTFGACYLMRNHG--LSEQPMFLYWAPPAAHKEAMDSPLHVHVPLFT------------------ 258 (528)
T ss_pred cccccccCCccccccccchhhhhhhccC--cCCCCceeeccchhhcccccccccccCccccC------------------
Confidence 111233445667788888888774 468999999999999985322 111110
Q ss_pred CChhHHHhhhhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCEEEEEEcCCCcccccc-------cc-
Q psy5200 137 PDKQWILQVTRKMQPVHRQFTDLLMTKRLQTLQSVDDAVEKIVKELKDLGELNNTYIIYTSDHGYHLGQF-------GL- 208 (271)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~v~~~D~~iG~ll~~L~~~g~~~nTivv~tsDHG~~~g~h-------~~- 208 (271)
......+..+..|.++|+.+|..||+++++|++.|+++||+|+||||||..+..+ +.
T Consensus 259 ---------------~~~f~~~s~~~~y~~~V~~mD~~VG~ildaL~~~gl~nnTiv~FtSDnG~~~~~~~~~~~~n~~~ 323 (528)
T KOG3867|consen 259 ---------------PKTFAGRSKRGLYGDMVSEMDWSVGRILDALDDLGLANNTLVIFTSDNGGPLEGGRGNGGSNGPW 323 (528)
T ss_pred ---------------CccccchhhhhHHHHHHHHHHHHHHHHHHHHHHhCcccCeEEEEeCCCCccccCccccccccCCc
Confidence 0112244567889999999999999999999999999999999999999876422 22
Q ss_pred CCCCCCCCCCCceeeEEEEcCC-CCCCeee-----eeecchhHHHHhcCCCcc--------chhhhhhccc
Q psy5200 209 VKGKSFPFEFDIRVPFLMRGPG-IVPGTMY-----LLDVLIPQVRKFSSGSLI--------FIMSFLINLN 265 (271)
Q Consensus 209 ~~~k~~~~e~~~~VPlii~~P~-~~~g~~~-----~~Di~~PTll~lag~~~~--------~l~~~l~~~~ 265 (271)
.+.|...||+++|+|.+++||+ +++|+++ .+|++ ||+++++|++.+ +++|+|.+..
T Consensus 324 ~g~~~~~weggir~~~~~~~p~~~~~g~v~~e~~s~~D~~-PTl~~lag~~~p~d~~idG~~l~p~L~g~~ 393 (528)
T KOG3867|consen 324 NGIKKPGWEGGIRVPGLARWPGVVPAGQVSNELTSLLDIL-PTLADLAGGPLPQDRVIDGRDLLPLLLGEA 393 (528)
T ss_pred cceecCCccccCCCcchhcCccccccceeccccccccccc-hHHHHHcCCCCCcCceecccchHHHHhccc
Confidence 2334446999999999999999 4566654 99998 999999999988 8999999887
No 7
>PRK03776 phosphoglycerol transferase I; Provisional
Probab=99.97 E-value=1.4e-29 Score=235.12 Aligned_cols=200 Identities=13% Similarity=0.104 Sum_probs=142.3
Q ss_pred Cchhhh-HHHHHhCCCceEEecccccCCCCC--CC-CCCCccccccccCcccCcceeccCCeeeccCCCCCCCCChHHHH
Q psy5200 3 WPVELT-SRNLLYFDISHGYFGKYLNKYNGS--YI-PPGWREWGALIMNSKYYNYSINMNGRKIKHGEDYYNDYYPDLIA 78 (271)
Q Consensus 3 ~p~~~~-~~~Lk~~GY~T~~~Gk~h~~~~~~--~~-p~Gfd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (271)
+|..++ +++||++||+|.+++++|.++.+. +. .+|||++.+...-...+... ......++.|+.++
T Consensus 240 ~P~~~cLgdILK~~GY~T~Fi~G~d~~F~n~~~f~~~hGFD~~yg~~d~~~~~~~~----------~~~n~WG~~Dd~Lf 309 (762)
T PRK03776 240 FPQNICLGDILKNSGYQNYFVQGANLRFAGKDVFLKSHGFDHLYGSEELKSVVADP----------HYRNDWGFYDDTVL 309 (762)
T ss_pred CCccccHHHHHHhCCCceEEEeCCCcCcCchhhhHHhCCCcEEecchhcccccccc----------cccCCcccCcHHHH
Confidence 566554 999999999999999999876532 22 27999876532200000000 00113567799999
Q ss_pred HHHHHHHHhhhcCCCCCCeEEEecCCCCCCCCCCChHHHh--hcCCCCCCCCCCCCCCCCCChhHHHhhhhccCcccHHH
Q psy5200 79 NDSVRFLRQSKQSFSKKPIMLVMSFPAPHGPEDSAPQYAN--MFFNVTSHHTPAYDYAPNPDKQWILQVTRKMQPVHRQF 156 (271)
Q Consensus 79 ~~a~~~l~~~~~~~~~~Pffl~~~~~~pH~p~~~p~~~~~--~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (271)
++|++.+++..+ .+||||+++.+.++|.|+..+.+... .|+.. .
T Consensus 310 d~A~e~l~eLsk--~~kPFfl~llTlstH~P~g~~~~~c~~~~y~~~------------------------------g-- 355 (762)
T PRK03776 310 DEAWKKFEELSR--SGQRFSLFTLTVDTHHPDGFISRTCNRKSYDFD------------------------------G-- 355 (762)
T ss_pred HHHHHHHHHhhc--CCCCEEEEecCCCCcCCCccCchhhcccccccC------------------------------C--
Confidence 999998887542 47999999999999999855443221 11000 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCEEEEEEcCCCccccccccCCCCCCCCCCCceeeEEEEcCCCCC---
Q psy5200 157 TDLLMTKRLQTLQSVDDAVEKIVKELKDLGELNNTYIIYTSDHGYHLGQFGLVKGKSFPFEFDIRVPFLMRGPGIVP--- 233 (271)
Q Consensus 157 ~~~~~~~y~~~v~~~D~~iG~ll~~L~~~g~~~nTivv~tsDHG~~~g~h~~~~~k~~~~e~~~~VPlii~~P~~~~--- 233 (271)
....|+++|+++|++||+++++|++.|++|||+|||+||||.+.++|+....+ ....+++|||++|+..+
T Consensus 356 ---~~~~~~~~v~~~D~~iG~fi~~Lk~~g~~dNTiIV~~sDHG~m~g~~~~~l~~----~kr~~i~lII~~p~~~g~~~ 428 (762)
T PRK03776 356 ---KPNQSFSAVSCSQENIAALINKIKASPWFKNTVIVVSSDHLAMNNTAWKYLNK----QDRNNLFFVIRGDKPQQETL 428 (762)
T ss_pred ---cchHHHHHHHHHHHHHHHHHHHHHhCCCccCeEEEEEccCCccccccchhhcc----CCceeEEEEEECCCcCCceE
Confidence 01346799999999999999999999999999999999999988776521111 12247899999997432
Q ss_pred -CeeeeeecchhHHHHhcCCCc
Q psy5200 234 -GTMYLLDVLIPQVRKFSSGSL 254 (271)
Q Consensus 234 -g~~~~~Di~~PTll~lag~~~ 254 (271)
..++++|++ ||||+++|++.
T Consensus 429 ~~~vs~IDI~-PTILdlaGi~~ 449 (762)
T PRK03776 429 AVKRNTMDNG-ATVLDILGGDN 449 (762)
T ss_pred CCceeehhHH-HHHHHHhCCCc
Confidence 224599997 99999999986
No 8
>PRK09598 lipid A phosphoethanolamine transferase; Reviewed
Probab=99.96 E-value=5e-28 Score=221.23 Aligned_cols=199 Identities=17% Similarity=0.178 Sum_probs=140.5
Q ss_pred hhhHHHHHhCCCceEEecccccCCCCCCCCCCCccccccccCcccCcceeccCCeeeccCCCCCCCCChHHHHHHHHHHH
Q psy5200 6 ELTSRNLLYFDISHGYFGKYLNKYNGSYIPPGWREWGALIMNSKYYNYSINMNGRKIKHGEDYYNDYYPDLIANDSVRFL 85 (271)
Q Consensus 6 ~~~~~~Lk~~GY~T~~~Gk~h~~~~~~~~p~Gfd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l 85 (271)
+.++++||++||+|.++++++.. ...+++.+.. ...+... +. + .+...|+.+.+.+.++|
T Consensus 293 ~nl~~ilk~aGy~T~W~snq~g~-----~~~~~~~~~~---~~~~~~~---~~------~---~~~~~De~LL~~l~~~l 352 (522)
T PRK09598 293 ENLPTYLTRAGIKVFWRSANDGE-----PNVKVTSYLK---NYELIQK---CP------N---CEAPYDESLLYNLPELI 352 (522)
T ss_pred CCHHHHHHHCCCeEEEEECCCCC-----CCccceeecc---chhcccc---CC------C---CCCCCHHHHHHHHHHHH
Confidence 45799999999999999987621 1123443321 1111110 00 0 11224777778888899
Q ss_pred HhhhcCCCCCCeEEEecCCCCCCC-CC--CChHHHhhcCCCCCCCCCCCCCCCCCChhHHHhhhhccCcccHHHHHHHHH
Q psy5200 86 RQSKQSFSKKPIMLVMSFPAPHGP-ED--SAPQYANMFFNVTSHHTPAYDYAPNPDKQWILQVTRKMQPVHRQFTDLLMT 162 (271)
Q Consensus 86 ~~~~~~~~~~Pffl~~~~~~pH~p-~~--~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (271)
++.. ++|+|++++++++|.| |. .|++| ++|.+.... ........++..+
T Consensus 353 ~~~~----~~p~fivlH~~GSH~P~Y~~RyP~~f-~~F~p~~~~-----------------------~~l~~~~~~~~~n 404 (522)
T PRK09598 353 KASS----NENVLLILHLAGSHGPNYDNKYPLNF-RVFKPVCSS-----------------------VELSSCSKESLIN 404 (522)
T ss_pred HhcC----CCCeEEEEeCcCCCCCcccccCChhh-cccCCCCcc-----------------------hhhhhccHHHHHH
Confidence 7642 5799999999999999 43 35555 444332100 0011112345678
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCEEEEEEcCCCccccccccCCCC---CCCCCCCceeeEEEEcCC-CCCC----
Q psy5200 163 KRLQTLQSVDDAVEKIVKELKDLGELNNTYIIYTSDHGYHLGQFGLVKGK---SFPFEFDIRVPFLMRGPG-IVPG---- 234 (271)
Q Consensus 163 ~y~~~v~~~D~~iG~ll~~L~~~g~~~nTivv~tsDHG~~~g~h~~~~~k---~~~~e~~~~VPlii~~P~-~~~g---- 234 (271)
.|+++|+|+|..||++++.|++.+. ||+||++||||+++||||...+. ...+++++|||||||+|+ .+++
T Consensus 405 ~YdnsI~ytD~~l~~ii~~Lk~~~~--~t~iIy~SDHGe~lge~g~~~hg~p~~~~~~~~~~VP~ii~~s~~~~~~~~~~ 482 (522)
T PRK09598 405 AYDNTIFYNDYLLDKIISMLKNLKQ--PALMIYLSDHGESLGEGAFYLHGIPKSIAPKEQYEIPFIVWASDSFKKQHSII 482 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCC--CeEEEEEccCccccccCCcccCCCCcCCCccccccccEEEEEChhhhhhchhh
Confidence 9999999999999999999999886 99999999999999999987553 345789999999999987 3322
Q ss_pred ----eeeeeecchhHHHHhcCCCcc
Q psy5200 235 ----TMYLLDVLIPQVRKFSSGSLI 255 (271)
Q Consensus 235 ----~~~~~Di~~PTll~lag~~~~ 255 (271)
.+++.||+ ||||+++|++.+
T Consensus 483 ~~~~~~S~ddif-~TlL~l~gv~t~ 506 (522)
T PRK09598 483 QTQTPINQNVIF-HSVLGVFDFKNP 506 (522)
T ss_pred hcCCCchHHHHH-HHHHHHcCCCCc
Confidence 35699997 999999999876
No 9
>PRK12363 phosphoglycerol transferase I; Provisional
Probab=99.95 E-value=3.9e-27 Score=218.73 Aligned_cols=196 Identities=15% Similarity=0.126 Sum_probs=134.0
Q ss_pred hHHHHHhCCCceEEecccccCCCCC---CCCCCCccccccccCcccCcceeccCCeeeccCCCCCCCCChHHHHHHHHHH
Q psy5200 8 TSRNLLYFDISHGYFGKYLNKYNGS---YIPPGWREWGALIMNSKYYNYSINMNGRKIKHGEDYYNDYYPDLIANDSVRF 84 (271)
Q Consensus 8 ~~~~Lk~~GY~T~~~Gk~h~~~~~~---~~p~Gfd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 84 (271)
++++|+++||+|++++..+..+.+. +..+|||++.+. +++. +...+........++.|+.++++++++
T Consensus 242 La~ILkq~GY~Taf~hG~~~sF~nrd~fyk~hGFD~f~d~----~~f~-----~~~~~~~~~~~~WGl~Dd~lfd~A~~~ 312 (703)
T PRK12363 242 LGDYLKDQGYTNHYVGGADASFAGKGKFLSSHGFDEVHDV----NYFL-----HDKGVAPKHFSAWGVHDDVLLDDAYDE 312 (703)
T ss_pred HHHHHHhCCCcEEEEeCCCcCcCchhhHHHhCCCCEEeec----hhhc-----cccccCcccCCCCCcccHHHHHHHHHH
Confidence 4899999999999998765443222 123688886532 1221 000011011113456799999999999
Q ss_pred HHhhhcCCCCCCeEEEecCCCCCCCCC-CChHHHhhcCCCCCCCCCCCCCCCCCChhHHHhhhhccCcccHHHHHHHHHH
Q psy5200 85 LRQSKQSFSKKPIMLVMSFPAPHGPED-SAPQYANMFFNVTSHHTPAYDYAPNPDKQWILQVTRKMQPVHRQFTDLLMTK 163 (271)
Q Consensus 85 l~~~~~~~~~~Pffl~~~~~~pH~p~~-~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (271)
|++.. +.+||||+++.+.++|.||. .|....... +. .... ...
T Consensus 313 Le~Ls--~~~qPFfl~llTvsnH~Py~~lp~~~~~~~--------~~--------------------~~~g------d~~ 356 (703)
T PRK12363 313 FETLS--RAGQPFMLTTLTMDTHHPAGHLPSACKGQR--------YD--------------------SPLG------DIG 356 (703)
T ss_pred HHhhh--ccCCCEEEEeeCCCCCCCcccCchhccccc--------cc--------------------cccc------cHH
Confidence 99864 24799999999999999984 232111100 00 0000 145
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCEEEEEEcCCCccccccccCCCCCCCCCCCceeeEEEEcCC-CCCCee-----e
Q psy5200 164 RLQTLQSVDDAVEKIVKELKDLGELNNTYIIYTSDHGYHLGQFGLVKGKSFPFEFDIRVPFLMRGPG-IVPGTM-----Y 237 (271)
Q Consensus 164 y~~~v~~~D~~iG~ll~~L~~~g~~~nTivv~tsDHG~~~g~h~~~~~k~~~~e~~~~VPlii~~P~-~~~g~~-----~ 237 (271)
|+++++|+|++||++++.||++|+++||+|||+||||.... .........-|||++|++|+ ++++.+ +
T Consensus 357 Yl~tI~ysD~aIG~FId~LKksglydNTIIV~~GDH~~~~~------~~~~~L~~~kRvP~~I~ip~gik~g~i~~~~gS 430 (703)
T PRK12363 357 MLHAIKCSDRLIGQLVDRIRNSRYGKNTIIVIASDHLAMPN------DLSDVLTKQKRENLLLFLGKDIAPQQVVTRAGT 430 (703)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcCCeEEEEEcCCCcccc------cccccCCCCCeEEEEEEECCcCCCCcEECCeee
Confidence 88999999999999999999999999999999999995421 11111223358999988855 766654 4
Q ss_pred eeecchhHHHHhcCCCcc
Q psy5200 238 LLDVLIPQVRKFSSGSLI 255 (271)
Q Consensus 238 ~~Di~~PTll~lag~~~~ 255 (271)
++||+ ||||+++|++.+
T Consensus 431 ~iDI~-PTLL~LLGi~~~ 447 (703)
T PRK12363 431 TLDSG-ATLLQLLEPGMR 447 (703)
T ss_pred eeHHH-HHHHHHhCCCCC
Confidence 99997 999999999765
No 10
>PRK11598 putative metal dependent hydrolase; Provisional
Probab=99.94 E-value=8.7e-26 Score=207.06 Aligned_cols=158 Identities=20% Similarity=0.282 Sum_probs=117.5
Q ss_pred ChHHHHHHHHHHHHhhhcCCCCCCeEEEecCCCCCCCCCCChHHHhhcCCCCCCCCCCCCCCCCCChhHHHhhhhccCcc
Q psy5200 73 YPDLIANDSVRFLRQSKQSFSKKPIMLVMSFPAPHGPEDSAPQYANMFFNVTSHHTPAYDYAPNPDKQWILQVTRKMQPV 152 (271)
Q Consensus 73 ~~~~~~~~a~~~l~~~~~~~~~~Pffl~~~~~~pH~p~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 152 (271)
.|+.+.+...++|++. +++.|++++++++|.|+ |.++|++......|..... ..
T Consensus 355 ~De~LL~~l~~~L~~~-----~~~~fivLH~~GSH~P~-----Y~~RyP~~~~~F~p~~~~~----------------~~ 408 (545)
T PRK11598 355 YDEVLFHGLENYINNL-----QGDGVIVLHTIGSHGPT-----YYNRYPPQFRKFTPTCDTN----------------EI 408 (545)
T ss_pred cHHHHHHHHHHHHHhc-----CCCeEEEEeCCCCCCcc-----hhhcCChhhccCCCCCCcc----------------cc
Confidence 5778888888888764 45689999999999994 3344433322222221100 01
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCEEEEEEcCCCccccccccCCCCCCCC----CCCceeeEEEEc
Q psy5200 153 HRQFTDLLMTKRLQTLQSVDDAVEKIVKELKDLGELNNTYIIYTSDHGYHLGQFGLVKGKSFPF----EFDIRVPFLMRG 228 (271)
Q Consensus 153 ~~~~~~~~~~~y~~~v~~~D~~iG~ll~~L~~~g~~~nTivv~tsDHG~~~g~h~~~~~k~~~~----e~~~~VPlii~~ 228 (271)
.....++.++.|+++|+|+|.+||++++.|++.+..+||+|||+||||+++||||...+. ..| ++++|||||||+
T Consensus 409 ~~~~~~~~~n~YdnsI~ytD~~lg~ii~~Lk~~~~~~nT~iIy~SDHGe~lge~g~~~hg-~~y~~aP~~~~~VPliiw~ 487 (545)
T PRK11598 409 QTCTQQQLVNTYDNTILYVDYIVDKAINLLKQHQDKFNTSLVYLSDHGESLGENGIYLHG-LPYAIAPDQQTHVPMLLWL 487 (545)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCeEEEEECcCCCccccCCcccCC-CccccCccccccccEEEEE
Confidence 112235667899999999999999999999999999999999999999999999987543 333 889999999987
Q ss_pred CC-CCC---------------CeeeeeecchhHHHHhcCCCccchh
Q psy5200 229 PG-IVP---------------GTMYLLDVLIPQVRKFSSGSLIFIM 258 (271)
Q Consensus 229 P~-~~~---------------g~~~~~Di~~PTll~lag~~~~~l~ 258 (271)
+. .++ ..+++.||+ ||+|+++|++.+.+.
T Consensus 488 s~~~~~~~~~~~~~l~~~~~~~~~s~ddl~-~TlL~l~gI~t~~y~ 532 (545)
T PRK11598 488 SPDYQKRYGVDQQCLQKQAQTQDYSQDNLF-STLLGLTGVQTKEYQ 532 (545)
T ss_pred CcchhccccchhhhhhhhccCCceeHHhHH-HHHHHHhCCCCCCCC
Confidence 54 221 135688987 999999999988444
No 11
>PRK10649 hypothetical protein; Provisional
Probab=99.94 E-value=4.5e-26 Score=211.33 Aligned_cols=205 Identities=13% Similarity=0.102 Sum_probs=136.0
Q ss_pred hhhHHHHHhCCCceEEecccccCCCCCCCCCCCccccccccCcccCcceeccCCeeeccCCCCCCCCChHHHHHHHHHHH
Q psy5200 6 ELTSRNLLYFDISHGYFGKYLNKYNGSYIPPGWREWGALIMNSKYYNYSINMNGRKIKHGEDYYNDYYPDLIANDSVRFL 85 (271)
Q Consensus 6 ~~~~~~Lk~~GY~T~~~Gk~h~~~~~~~~p~Gfd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l 85 (271)
..++++||++||+|.++++++...... ..++.+...... .+|. ..+. ...... .|+.+.....++|
T Consensus 311 ~~l~~llk~aGY~T~wisNq~~~~~~~---~~~~~~~~~~d~-~~f~----~~~~-----~~~~~~-~D~~LL~~l~~~L 376 (577)
T PRK10649 311 PSLMNMMKQAGYKTFWITNQQTMTARN---TMLTVFSRQTDK-QYYM----NQQR-----TQNARE-YDTNVLKPFSEVL 376 (577)
T ss_pred CCHHHHHHHCCCeEEEEeCCccccccc---hhhhHhhhhccc-hhhc----cccc-----cCCCCC-cHHHHHHHHHHHH
Confidence 347999999999999999877521111 112222211111 1110 0000 000112 3555556666777
Q ss_pred HhhhcCCCCCCeEEEecCCCCCCCCC--CChHHHhhcCCCCCCCCCCCCCCCCCChhHHHhhhhccCcccHHHHHHHHHH
Q psy5200 86 RQSKQSFSKKPIMLVMSFPAPHGPED--SAPQYANMFFNVTSHHTPAYDYAPNPDKQWILQVTRKMQPVHRQFTDLLMTK 163 (271)
Q Consensus 86 ~~~~~~~~~~Pffl~~~~~~pH~p~~--~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (271)
++ .++|+|++++++++|.||. .|+++ ++|.+.... .+. .. .....+..+.
T Consensus 377 ~~-----~~~~~fivlHl~GsH~~Y~~RyP~~~-~~F~~~~~~-~~~--------------------~~-~~~~~~~~~~ 428 (577)
T PRK10649 377 AD-----PAPKKFIIVHLLGTHIKYKYRYPENQ-GKFDDRTGH-VPP--------------------GL-NADELESYND 428 (577)
T ss_pred hc-----cCCCcEEEEEecCCCcchhhhCCHHH-hcCCCCCCc-ccc--------------------cc-cchHHHHHHh
Confidence 53 2578899999999999984 57776 666443210 000 00 1112245678
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCEEEEEEcCCCccc---cccccCCCC-CCCCCCCceeeEEEEcCC-CC------
Q psy5200 164 RLQTLQSVDDAVEKIVKELKDLGELNNTYIIYTSDHGYHL---GQFGLVKGK-SFPFEFDIRVPFLMRGPG-IV------ 232 (271)
Q Consensus 164 y~~~v~~~D~~iG~ll~~L~~~g~~~nTivv~tsDHG~~~---g~h~~~~~k-~~~~e~~~~VPlii~~P~-~~------ 232 (271)
|+++|.|+|..||++++.|++. .+||+|||+||||+.+ |+|+..+++ ...|++++||||||+++. ..
T Consensus 429 Y~nsI~y~D~~l~~ii~~Lk~~--~~nt~iiy~SDHGe~~~~~~~~~~lG~~~~~~~~~~~~VP~ii~~s~~~~~~~~~~ 506 (577)
T PRK10649 429 YDNANLYNDHVVASLIKDFKAT--DPNGFLVYFSDHGEEVYDTPPHKTQGRNEDNPTRHMYTIPFLLWTSEKWQAAHPRD 506 (577)
T ss_pred hhHHHHHHHHHHHHHHHHHhcC--CCCeEEEEECCCCcccccCCcccccCCCCCCCCcccceecEEEEECHHHHhhCchh
Confidence 9999999999999999999997 4999999999999996 567766543 578899999999999854 21
Q ss_pred -----CCeeeeeecchhHHHHhcCCCcc
Q psy5200 233 -----PGTMYLLDVLIPQVRKFSSGSLI 255 (271)
Q Consensus 233 -----~g~~~~~Di~~PTll~lag~~~~ 255 (271)
...+++.|++ ||+++++|++.+
T Consensus 507 ~~~~~~~~~s~~Dl~-~Tll~laGi~~~ 533 (577)
T PRK10649 507 FSQDVDRKYSLAELI-HTWSDLAGLSYD 533 (577)
T ss_pred hhhhhcCCeeHHhHH-HHHHHHcCCCCC
Confidence 2225699987 999999999876
No 12
>PRK11560 phosphoethanolamine transferase; Provisional
Probab=99.92 E-value=9.7e-24 Score=193.67 Aligned_cols=149 Identities=10% Similarity=0.120 Sum_probs=107.4
Q ss_pred ChHHHHHHHHHHHHhhhcCCCCCCeEEEecCCCCCCCCC--CChHHHhhcCCCCCCCCCCCCCCCCCChhHHHhhhhccC
Q psy5200 73 YPDLIANDSVRFLRQSKQSFSKKPIMLVMSFPAPHGPED--SAPQYANMFFNVTSHHTPAYDYAPNPDKQWILQVTRKMQ 150 (271)
Q Consensus 73 ~~~~~~~~a~~~l~~~~~~~~~~Pffl~~~~~~pH~p~~--~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 150 (271)
.|+.+++...++|++.. ++++|+++++.++|.+|. .|+++ ++|.+.... .
T Consensus 370 ~D~~LL~~l~~~L~~~~----~~~~~ivLH~~GSH~~Y~~RyP~~f-~~F~p~~~~-------~---------------- 421 (558)
T PRK11560 370 DDMLLVDEMKQSLGRNP----DGKHLIILHTKGSHYNYTQRYPRSF-ARYQPECIG-------V---------------- 421 (558)
T ss_pred ChHHHHHHHHHHHHhcC----CCCeEEEEeccCCCcChhhcCCHhh-hccCCcCCC-------c----------------
Confidence 47778888888887642 345777999999999874 34433 444322110 0
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCEEEEEEcCCCccccccccCC-CCCCCC-CCCceeeEEEEc
Q psy5200 151 PVHRQFTDLLMTKRLQTLQSVDDAVEKIVKELKDLGELNNTYIIYTSDHGYHLGQFGLVK-GKSFPF-EFDIRVPFLMRG 228 (271)
Q Consensus 151 ~~~~~~~~~~~~~y~~~v~~~D~~iG~ll~~L~~~g~~~nTivv~tsDHG~~~g~h~~~~-~k~~~~-e~~~~VPlii~~ 228 (271)
+ ..-..++..+.|+++|.++|+.||++++.|++ +||+|||+||||+.+|+++... .+...+ ++++|||||||+
T Consensus 422 ~-~~c~~~~~~n~YdnsI~ytD~~lg~ii~~Lk~----~nTivIy~SDHGe~lge~~~lhg~~~~~~~~~~~~VPliv~~ 496 (558)
T PRK11560 422 D-SGCSKAQLINSYDNSVLYVDHFISSVIDQLRD----KKAIVFYAADHGESINEREHLHGTPREMAPPEQFRVPMMVWM 496 (558)
T ss_pred c-cccchHHHHHHHHHHHHHHHHHHHHHHHHHHh----cCeEEEEEcCCCCcCCCCcccCCCCcccCCccCeeeCEEEEE
Confidence 0 00012355688999999999999999999997 6999999999999999987432 233344 489999999998
Q ss_pred CC-C-------------CCC-----eeeeeecchhHHHHhcCCCcc
Q psy5200 229 PG-I-------------VPG-----TMYLLDVLIPQVRKFSSGSLI 255 (271)
Q Consensus 229 P~-~-------------~~g-----~~~~~Di~~PTll~lag~~~~ 255 (271)
++ . +++ .+++.||+ ||+|+++|++.+
T Consensus 497 s~~~~~~p~~~~~~~~l~~~~~~~~~~s~~dlf-~TlL~~~gv~~p 541 (558)
T PRK11560 497 SDKYLANPDNAQAFAQLKKQADMKVPRRHVELF-DTILGCLGYTSP 541 (558)
T ss_pred ccccccCCccchhHHHhccccccCCceeehhHH-HHHHHHcCCCCC
Confidence 43 1 122 25699997 999999999865
No 13
>COG3083 Predicted hydrolase of alkaline phosphatase superfamily [General function prediction only]
Probab=99.90 E-value=5.8e-23 Score=179.61 Aligned_cols=185 Identities=18% Similarity=0.256 Sum_probs=129.4
Q ss_pred hHHHHHhCCCceEEecccccCCCCCCCCCCCccccccccCcccCcceeccCCeeeccCCCCCCCCChHHHHHHHHHHHHh
Q psy5200 8 TSRNLLYFDISHGYFGKYLNKYNGSYIPPGWREWGALIMNSKYYNYSINMNGRKIKHGEDYYNDYYPDLIANDSVRFLRQ 87 (271)
Q Consensus 8 ~~~~Lk~~GY~T~~~Gk~h~~~~~~~~p~Gfd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~ 87 (271)
+.+.|+++||+-+.++.... ...=|+.-. +-+.... . ....+ . .+...++....|++.
T Consensus 331 Lie~L~qq~YQfglfss~~F------~splfrqal-------f~~l~~~--~-~~t~~-----~-~~~~~t~~~~wf~~~ 388 (600)
T COG3083 331 LIEALRQQNYQFGLFSSDGF------KSPLFRQAL-------FSDLSLP--A-LVTQS-----S-DDERATQWLLWFGRY 388 (600)
T ss_pred HHHHHHhcCceEEeeccCCC------CCchHHHHH-------hhhcCcc--c-cccCC-----c-hHHHHHHHHHHHHHh
Confidence 68999999999999976322 111222211 0000000 0 00000 0 133445555555555
Q ss_pred hhcCCCCCCeEEEecCCCCCCCCCCChHHHhhcCCCCCCCCCCCCCCCCCChhHHHhhhhccCcccHHHHHHHHHHHHHH
Q psy5200 88 SKQSFSKKPIMLVMSFPAPHGPEDSAPQYANMFFNVTSHHTPAYDYAPNPDKQWILQVTRKMQPVHRQFTDLLMTKRLQT 167 (271)
Q Consensus 88 ~~~~~~~~Pffl~~~~~~pH~p~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~ 167 (271)
+ +.++|||.++++..+|.-..+...- ........++|..+
T Consensus 389 ~---~~d~PwFs~L~l~~~~~~~~~~s~q-------------------------------------~~~~~~~~~~Y~~a 428 (600)
T COG3083 389 R---DEDNPWFSYLSLNSSHANDDPSSNQ-------------------------------------AKARPPFKNRYQNA 428 (600)
T ss_pred h---ccCCCceEEEEcccccccccccccc-------------------------------------ccccchHHHHHHHH
Confidence 4 3589999999999999865432110 00012256889999
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCEEEEEEcCCCccccccc--cCCCCCCCCCCCceeeEEEEcCCCCCCee----eeeec
Q psy5200 168 LQSVDDAVEKIVKELKDLGELNNTYIIYTSDHGYHLGQFG--LVKGKSFPFEFDIRVPFLMRGPGIVPGTM----YLLDV 241 (271)
Q Consensus 168 v~~~D~~iG~ll~~L~~~g~~~nTivv~tsDHG~~~g~h~--~~~~k~~~~e~~~~VPlii~~P~~~~g~~----~~~Di 241 (271)
+.++|.+||++++.|++.|.+|||+||+|||||+.+.|.. .|++..+.....++|||+|+|||.+++++ +|+|+
T Consensus 429 ~~~vD~~I~~vLe~L~~~~~L~NTvVIITs~HG~eFne~~~~ywG~~t~ysr~qlqVPlvihwpg~~~~~v~~lTsH~Dl 508 (600)
T COG3083 429 LREVDSQIGRVLEQLRNSGLLDNTVVIITADHGEEFNEEEQNYWGHGTNYSRYQLQVPLVIHWPGTPAGRVNHLTSHLDL 508 (600)
T ss_pred HHHHHHHHHHHHHHHhhcccccceEEEEECCCCcccCccccccccCCCccccceecccEEEEeCCCcchhhcCccchhhh
Confidence 9999999999999999999999999999999999987764 47766666666889999999999776664 59999
Q ss_pred chhHHHH-hcCCCcc
Q psy5200 242 LIPQVRK-FSSGSLI 255 (271)
Q Consensus 242 ~~PTll~-lag~~~~ 255 (271)
+ ||++- +.||+.|
T Consensus 509 ~-~tLMq~ll~V~np 522 (600)
T COG3083 509 M-TTLMQRLLGVSNP 522 (600)
T ss_pred H-HHHHHHHhcCCCC
Confidence 8 99998 9999877
No 14
>COG1368 MdoB Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane]
Probab=99.79 E-value=5.4e-19 Score=167.15 Aligned_cols=199 Identities=21% Similarity=0.237 Sum_probs=141.2
Q ss_pred hhHHHHHhCCCceEEecccccCCCC--C-CCCCCCccccccccCcccCcceeccCCeeeccCCCCCCCCChHHHHHHHHH
Q psy5200 7 LTSRNLLYFDISHGYFGKYLNKYNG--S-YIPPGWREWGALIMNSKYYNYSINMNGRKIKHGEDYYNDYYPDLIANDSVR 83 (271)
Q Consensus 7 ~~~~~Lk~~GY~T~~~Gk~h~~~~~--~-~~p~Gfd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 83 (271)
.+|.+|+++||+|+++..+...+.. . +.-.|||++.+. ..|-.... ... ..+..|+.+.+++++
T Consensus 344 slp~iLk~~GY~t~a~hg~~~~fwNr~~~yk~~Gfd~f~~~---~~~~~~~~----~~~------~~G~sD~~l~~~~~~ 410 (650)
T COG1368 344 SLPAILKQQGYKTAALHGGDGSFWNRKSFYKIFGFDDFFDL---ESFDGNAD----SEI------GWGLSDKDLFKESLP 410 (650)
T ss_pred cHHHHHhcCCceEEEEeCCCcceecHHHHHHhcChhhccch---hhcCCCcc----ccc------CCCCchHHHHHHHHH
Confidence 4699999999999999765433211 1 122588887651 11111110 111 234568888999999
Q ss_pred HHHhhhcCCCCCCeEEEecCCCCCCCCCCChHHHh-hcCCCCCCCCCCCCCCCCCChhHHHhhhhccCcccHHHHHHHHH
Q psy5200 84 FLRQSKQSFSKKPIMLVMSFPAPHGPEDSAPQYAN-MFFNVTSHHTPAYDYAPNPDKQWILQVTRKMQPVHRQFTDLLMT 162 (271)
Q Consensus 84 ~l~~~~~~~~~~Pffl~~~~~~pH~p~~~p~~~~~-~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (271)
.++.. ++|||.++.+.+.|.||..|.+..+ .+... .. ......
T Consensus 411 ~l~~~-----~~Pfy~~~iTlsnH~Pf~~~~~~~~~~~~~~------~~-------------------------~~~~l~ 454 (650)
T COG1368 411 LLKKL-----KKPFFSFVITLSNHGPFELPEGKRNELLEEP------LS-------------------------ASTALA 454 (650)
T ss_pred HHHhc-----CCChHheEEeccCCCCCCCChhhhccccccc------Cc-------------------------Cccccc
Confidence 99976 5799999999999999999987664 22110 00 000345
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCEEEEEEcCCCcccccccc----CCCCCCCCCCCceeeEEEEcCCCCCC-e--
Q psy5200 163 KRLQTLQSVDDAVEKIVKELKDLGELNNTYIIYTSDHGYHLGQFGL----VKGKSFPFEFDIRVPFLMRGPGIVPG-T-- 235 (271)
Q Consensus 163 ~y~~~v~~~D~~iG~ll~~L~~~g~~~nTivv~tsDHG~~~g~h~~----~~~k~~~~e~~~~VPlii~~P~~~~g-~-- 235 (271)
.|...++|.|+++|++++.|++.|+++||+||++|||..-.+++.. ..++.......-+||++|..||++.. .
T Consensus 455 ~y~~~~~y~D~al~~F~~~lkk~~~~~~sviv~~GDH~~~~~~~~~~~~~~~~~~~~~~~~~~vP~~i~~~g~~~~~~~~ 534 (650)
T COG1368 455 NYLQAVHYADEALGQFIDKLKKSGLYKNSVIVLYGDHYGISGNQNLAMPKFLGKSYDIDMLQRVPLLIHAPGIKNKKKID 534 (650)
T ss_pred chhhhhhhHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCcchhhhhhhhhhcccccchhHHhcCCeEEEcCCCCcccccc
Confidence 6788899999999999999999999999999999999987766532 11222223346689999999997552 2
Q ss_pred --eeeeecchhHHHHhcCCCcc
Q psy5200 236 --MYLLDVLIPQVRKFSSGSLI 255 (271)
Q Consensus 236 --~~~~Di~~PTll~lag~~~~ 255 (271)
...+||+ ||++.++|++..
T Consensus 535 ~~~~qidi~-pTil~l~gi~~~ 555 (650)
T COG1368 535 TVGGQLDIA-PTILGLLGISTK 555 (650)
T ss_pred ccccccchh-hHHHHHcCCCCc
Confidence 2399998 999999999853
No 15
>PRK05362 phosphopentomutase; Provisional
Probab=99.79 E-value=2.7e-18 Score=150.99 Aligned_cols=165 Identities=14% Similarity=0.076 Sum_probs=114.4
Q ss_pred CchhhhHHHHHhCCCceEEecccccCCCCCCCCCCCccccccccCcccCcceeccCCeeeccCCCCCCCCChHHHHHHHH
Q psy5200 3 WPVELTSRNLLYFDISHGYFGKYLNKYNGSYIPPGWREWGALIMNSKYYNYSINMNGRKIKHGEDYYNDYYPDLIANDSV 82 (271)
Q Consensus 3 ~p~~~~~~~Lk~~GY~T~~~Gk~h~~~~~~~~p~Gfd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 82 (271)
-|..|+.+.|+++||+|..+||..-.+ .-.|+++... .-.....++.++
T Consensus 221 p~~~Tl~d~L~~aG~~v~~VGki~DiF----a~~G~t~~~~---------------------------~~~~~~~~~~al 269 (394)
T PRK05362 221 PPAPTVLDKLKEAGGEVIAVGKIADIF----AGQGITEKVK---------------------------TKSNMDGMDATI 269 (394)
T ss_pred CCCCCHHHHHHHCCCeEEEEEehhhcc----cCCCcccccC---------------------------CCCHHHHHHHHH
Confidence 356788999999999999999943111 1123332110 012445678899
Q ss_pred HHHHhhhcCCCCCCeEEEecCCCCCCCCCCChHHHhhcCCCCCCCCCCCCCCCCCChhHHHhhhhccCcccHHHHHHHHH
Q psy5200 83 RFLRQSKQSFSKKPIMLVMSFPAPHGPEDSAPQYANMFFNVTSHHTPAYDYAPNPDKQWILQVTRKMQPVHRQFTDLLMT 162 (271)
Q Consensus 83 ~~l~~~~~~~~~~Pffl~~~~~~pH~p~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (271)
+.|++. ++|+|+++++.....-|. ......
T Consensus 270 e~L~~~-----~~~~fvfvn~~~~D~~~G---------------------------------------------H~~~~~ 299 (394)
T PRK05362 270 EEMKEA-----GDNGLVFTNLVDFDSLYG---------------------------------------------HRRDVA 299 (394)
T ss_pred HHHHhC-----CCCcEEEEecccCccccC---------------------------------------------CcCCHH
Confidence 999742 579999998887754211 001125
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCEEEEEEcCCCccccccccCCCCCCCCCCCceeeEEEEcCCCCC----Ceeee
Q psy5200 163 KRLQTLQSVDDAVEKIVKELKDLGELNNTYIIYTSDHGYHLGQFGLVKGKSFPFEFDIRVPFLMRGPGIVP----GTMYL 238 (271)
Q Consensus 163 ~y~~~v~~~D~~iG~ll~~L~~~g~~~nTivv~tsDHG~~~g~h~~~~~k~~~~e~~~~VPlii~~P~~~~----g~~~~ 238 (271)
.|.++++.+|++||+|++.|+ +||+||||||||...+.++ ..+ ...+|||||++|+++. ..+++
T Consensus 300 ~y~~ale~~D~~lg~ll~~L~-----~~tlliiTaDHG~d~t~~g---t~H----T~e~VPlIi~gp~v~~~~l~~~~sl 367 (394)
T PRK05362 300 GYAAALEEFDARLPELLAALK-----EDDLLIITADHGNDPTWPG---TDH----TREYVPLLVYGPKFKGGSLGHRETF 367 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHhc-----cCCEEEEeCCCCCCCCCCC---CCC----CCCceeEEEEECCCCccEECCCCEe
Confidence 688999999999999999997 4799999999997432221 111 2358999999999752 22459
Q ss_pred eecchhHHHHhcCCCcc----chhhhh
Q psy5200 239 LDVLIPQVRKFSSGSLI----FIMSFL 261 (271)
Q Consensus 239 ~Di~~PTll~lag~~~~----~l~~~l 261 (271)
+||+ |||++++|++.| |+++.|
T Consensus 368 ~DI~-pTia~l~Gv~~P~~G~Sfl~~l 393 (394)
T PRK05362 368 ADIG-ATIADNFGVEPMEYGKSFLDEL 393 (394)
T ss_pred hhHH-HHHHHHcCcCCCCCCCcHHHhh
Confidence 9997 999999999975 455443
No 16
>TIGR01307 pgm_bpd_ind 2,3-bisphosphoglycerate-independent phosphoglycerate mutase. This protein is about double in length of, and devoid of homology to the form of phosphoglycerate mutase that uses 2,3-bisphosphoglycerate as a cofactor.
Probab=99.74 E-value=8.5e-17 Score=144.89 Aligned_cols=126 Identities=17% Similarity=0.274 Sum_probs=92.0
Q ss_pred CCCChHHHHHHHHHHHHhhhcCCCCCCeEEEecCCCCCCCCCCChHHHhhcCCCCCCCCCCCCCCCCCChhHHHhhhhcc
Q psy5200 70 NDYYPDLIANDSVRFLRQSKQSFSKKPIMLVMSFPAPHGPEDSAPQYANMFFNVTSHHTPAYDYAPNPDKQWILQVTRKM 149 (271)
Q Consensus 70 ~~~~~~~~~~~a~~~l~~~~~~~~~~Pffl~~~~~~pH~p~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 149 (271)
....+..+++.++++|++ ++|+|+++++..+= ...
T Consensus 362 PeMsa~evtd~~i~~I~~------~k~dfi~vnfan~D--------mvG------------------------------- 396 (501)
T TIGR01307 362 PEMSAKAVTDAVLEAIAQ------GKFDLIVVNFANPD--------MVG------------------------------- 396 (501)
T ss_pred CccCHHHHHHHHHHHHhc------cCCCEEEEECCCcc--------ccc-------------------------------
Confidence 345678899999999975 68999999994431 000
Q ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCEEEEEEcCCCcc--cc-ccccCCCCCCCCCCCceeeEEE
Q psy5200 150 QPVHRQFTDLLMTKRLQTLQSVDDAVEKIVKELKDLGELNNTYIIYTSDHGYH--LG-QFGLVKGKSFPFEFDIRVPFLM 226 (271)
Q Consensus 150 ~~~~~~~~~~~~~~y~~~v~~~D~~iG~ll~~L~~~g~~~nTivv~tsDHG~~--~g-~h~~~~~k~~~~e~~~~VPlii 226 (271)
... ....|..+|+.+|++||+|+++|++.|. +||||||||.. +. ++| +........+|||||
T Consensus 397 --Htg-----~~~a~v~AIE~vD~~LGrIl~aLke~G~----~VIiTADHGnae~m~d~~g----~p~t~HT~~~VP~Ii 461 (501)
T TIGR01307 397 --HTG-----NFEAAIKAVEALDVCLGRIVEACKKVGG----TLFLTADHGNAEEMIDENG----NPHTAHTTNPVPFVC 461 (501)
T ss_pred --CCC-----CHHHHHHHHHHHHHHHHHHHHHHHhCCC----EEEEEcCCCChhhccCCCC----CcccCCCCeEeeEEE
Confidence 000 1235788999999999999999999886 69999999952 22 222 111133468999999
Q ss_pred EcCC-CC--CCeeeeeecchhHHHHhcCCCccc
Q psy5200 227 RGPG-IV--PGTMYLLDVLIPQVRKFSSGSLIF 256 (271)
Q Consensus 227 ~~P~-~~--~g~~~~~Di~~PTll~lag~~~~~ 256 (271)
+||+ ++ ....+++||+ ||||+++|++.|.
T Consensus 462 ~~p~~i~~~~~~~sL~DIa-PTiLdL~Gi~~P~ 493 (501)
T TIGR01307 462 VGAKNVKLIREGGVLADIA-PTILDLMGLEQPA 493 (501)
T ss_pred EECCcccccCCCceEhHHH-HHHHHHhCcCCCC
Confidence 9996 32 2335699997 9999999999874
No 17
>TIGR01696 deoB phosphopentomutase. This protein is involved in the purine and pyrimidine salvage pathway. It catalyzes the conversion of D-ribose 1-phosphate to D-ribose 5-phosphate and the conversion of 2-deoxy-D-ribose 1-phosphate to 2-deoxy-D-ribose 5-phosphate. The seed members of this protein are characterized deoB proteins from E.Coli and Bacillus. This model matches pfam01676 for Metalloenzyme superfamily.
Probab=99.67 E-value=1.4e-15 Score=132.75 Aligned_cols=157 Identities=13% Similarity=0.083 Sum_probs=105.8
Q ss_pred chhhhHHHHHhCCCceEEecccccCCCCCCCCCCCccccccccCcccCcceeccCCeeeccCCCCCCCCChHHHHHHHHH
Q psy5200 4 PVELTSRNLLYFDISHGYFGKYLNKYNGSYIPPGWREWGALIMNSKYYNYSINMNGRKIKHGEDYYNDYYPDLIANDSVR 83 (271)
Q Consensus 4 p~~~~~~~Lk~~GY~T~~~Gk~h~~~~~~~~p~Gfd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 83 (271)
|..|+.+.|+++|+.+..+||..-.+.+ .|..+.. ........++.+++
T Consensus 215 ~~pTvld~l~~aG~~V~~VGki~DiF~g----~Glt~a~---------------------------~~~~~~~~~~~~l~ 263 (381)
T TIGR01696 215 FAPTVLQKLKDEGHDVISIGKIADIYDG----EGITKKV---------------------------RTTSNMDGMDATIK 263 (381)
T ss_pred CCCCHHHHHHHCCCeEEEEccHHhEecC----CCccccc---------------------------CCCCHHHHHHHHHH
Confidence 4677899999999999999996322111 1222211 01124455777888
Q ss_pred HHHhhhcCCCCCCeEEEecCCCCCCCCCCChHHHhhcCCCCCCCCCCCCCCCCCChhHHHhhhhccCcccHHHHHHHHHH
Q psy5200 84 FLRQSKQSFSKKPIMLVMSFPAPHGPEDSAPQYANMFFNVTSHHTPAYDYAPNPDKQWILQVTRKMQPVHRQFTDLLMTK 163 (271)
Q Consensus 84 ~l~~~~~~~~~~Pffl~~~~~~pH~p~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (271)
.|++ +++=|+++++.++=.-+. .+.....
T Consensus 264 aL~~------~~~~lif~nl~d~D~~~G---------------------------------------------H~~d~~~ 292 (381)
T TIGR01696 264 EMKE------DFTGISFTNLVDFDALWG---------------------------------------------HRRDVAG 292 (381)
T ss_pred HHhc------CCCCEEEEEeCCCccccC---------------------------------------------CCCCHHH
Confidence 8864 345588888766531100 0012356
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCEEEEEEcCCCccccccccCCCCCCCCCCCceeeEEEEcCCCCCCe-----eee
Q psy5200 164 RLQTLQSVDDAVEKIVKELKDLGELNNTYIIYTSDHGYHLGQFGLVKGKSFPFEFDIRVPFLMRGPGIVPGT-----MYL 238 (271)
Q Consensus 164 y~~~v~~~D~~iG~ll~~L~~~g~~~nTivv~tsDHG~~~g~h~~~~~k~~~~e~~~~VPlii~~P~~~~g~-----~~~ 238 (271)
|.++++.+|++||+|++.|+ +||+||||||||.... ..+..++ .-+|||||++|+++++. +++
T Consensus 293 y~~ale~vD~~Lg~ll~~L~-----~~tllIITADHG~Dp~---~~~t~HT----re~VPlIi~gp~i~~g~~l~~~~sl 360 (381)
T TIGR01696 293 YAAALELFDRRLPELFSLLR-----EDDLLIITADHGNDPT---WTGTDHT----REYIPVLVYSPKVKPGHSLGHRETF 360 (381)
T ss_pred HHHHHHHHHHHHHHHHHHhc-----cCCEEEEECCCCCCCC---CCCCcCC----CCCEeEEEEECCCCCCceeCCCCEe
Confidence 78999999999999999997 5789999999998211 1111111 12899999999976552 459
Q ss_pred eecchhHHHHhcCCCcc
Q psy5200 239 LDVLIPQVRKFSSGSLI 255 (271)
Q Consensus 239 ~Di~~PTll~lag~~~~ 255 (271)
.||+ |||++++|++.+
T Consensus 361 aDIa-pTIldllGv~~p 376 (381)
T TIGR01696 361 ADIG-ATIADNFGTSDP 376 (381)
T ss_pred hhHH-HHHHHHcCcCCC
Confidence 9997 999999999865
No 18
>PRK12383 putative mutase; Provisional
Probab=99.64 E-value=4.3e-15 Score=130.88 Aligned_cols=164 Identities=15% Similarity=0.143 Sum_probs=111.4
Q ss_pred hhhHHHHHhCCCceEEecccccCCCCCCCCCCCccccccccCcccCcceeccCCeeeccCCCCCCCCChHHHHHHHHHHH
Q psy5200 6 ELTSRNLLYFDISHGYFGKYLNKYNGSYIPPGWREWGALIMNSKYYNYSINMNGRKIKHGEDYYNDYYPDLIANDSVRFL 85 (271)
Q Consensus 6 ~~~~~~Lk~~GY~T~~~Gk~h~~~~~~~~p~Gfd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l 85 (271)
.+++..++++|++++++||...... -.|...+. ....++..++.+++.|
T Consensus 234 ~~v~~~l~~~G~~v~~VGKi~Di~s----~~G~t~~~---------------------------~~~~t~~~~~~~l~aL 282 (406)
T PRK12383 234 VQVPQKLYEAGVPVVLVGKVADIVN----NPYGVSWQ---------------------------NLVDTQRVMDITLDEF 282 (406)
T ss_pred chhhhHHHHcCCCEEEEEEhHHeec----cCCccccc---------------------------ccCCHHHHHHHHHHHH
Confidence 6679999999999999999542110 01111110 1122446678888888
Q ss_pred HhhhcCCCCCCeEEEecCCCCCCCCCCChHHHhhcCCCCCCCCCCCCCCCCCChhHHHhhhhccCcccHHHHHHHHHHHH
Q psy5200 86 RQSKQSFSKKPIMLVMSFPAPHGPEDSAPQYANMFFNVTSHHTPAYDYAPNPDKQWILQVTRKMQPVHRQFTDLLMTKRL 165 (271)
Q Consensus 86 ~~~~~~~~~~Pffl~~~~~~pH~p~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~ 165 (271)
++ +++=|+++++..+=..- .+.....|.
T Consensus 283 ~~------~~~dlvfvnl~~~D~~G----------------------------------------------H~~d~~~y~ 310 (406)
T PRK12383 283 NT------HPTAFICTNIQETDLAG----------------------------------------------HAEDVARYA 310 (406)
T ss_pred hc------CCCCEEEEeccCCcccc----------------------------------------------ccCCHHHHH
Confidence 64 33558888877652100 011235689
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCEEEEEEcCCCccccccccCCCCCCCCCCCceeeEEEEcCCCCC----Ceeeeeec
Q psy5200 166 QTLQSVDDAVEKIVKELKDLGELNNTYIIYTSDHGYHLGQFGLVKGKSFPFEFDIRVPFLMRGPGIVP----GTMYLLDV 241 (271)
Q Consensus 166 ~~v~~~D~~iG~ll~~L~~~g~~~nTivv~tsDHG~~~g~h~~~~~k~~~~e~~~~VPlii~~P~~~~----g~~~~~Di 241 (271)
++++.+|++|++|++.|+ ++|+||+|||||... .+ +.+.+ ..-+|||||++|++.+ .++++.||
T Consensus 311 ~aiE~iD~~lg~ll~~L~-----~~~lliITaDHG~d~----~~--~~t~H-Tre~VPlLi~gp~i~~~~lg~~~slaDI 378 (406)
T PRK12383 311 ERLEVVDRNLARLLEAMT-----PDDCLVVMADHGNDP----TI--GHSHH-TREVVPLLVYQKGLQATQLGVRTTLSDV 378 (406)
T ss_pred HHHHHHHHHHHHHHHHhc-----cCCEEEEEcCCCCCC----CC--CCcCC-CCcceEEEEEECCcccccCCCCcEEhhH
Confidence 999999999999999997 588999999999731 11 11111 1248999999999643 24579999
Q ss_pred chhHHHHhcCCCcc----chhhhhhccc
Q psy5200 242 LIPQVRKFSSGSLI----FIMSFLINLN 265 (271)
Q Consensus 242 ~~PTll~lag~~~~----~l~~~l~~~~ 265 (271)
. |||++++|++.+ |+.+.|.+..
T Consensus 379 a-pTIl~~~Gv~~p~~G~Sfl~~L~~~~ 405 (406)
T PRK12383 379 G-ATVCEFFGAPPPQNGRSFLSSLRFAG 405 (406)
T ss_pred H-HHHHHHcCCCCCCCCCcHHHHhhccC
Confidence 7 999999999965 7888776653
No 19
>PRK05434 phosphoglyceromutase; Provisional
Probab=99.62 E-value=1.6e-14 Score=131.08 Aligned_cols=125 Identities=16% Similarity=0.251 Sum_probs=92.2
Q ss_pred ChHHHHHHHHHHHHhhhcCCCCCCeEEEecCCCCCCCCCCChHHHhhcCCCCCCCCCCCCCCCCCChhHHHhhhhccCcc
Q psy5200 73 YPDLIANDSVRFLRQSKQSFSKKPIMLVMSFPAPHGPEDSAPQYANMFFNVTSHHTPAYDYAPNPDKQWILQVTRKMQPV 152 (271)
Q Consensus 73 ~~~~~~~~a~~~l~~~~~~~~~~Pffl~~~~~~pH~p~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 152 (271)
....+++.++++|++ +++-|+++++..|=.--.
T Consensus 371 s~~e~~d~~i~~l~~------~~~Dfv~vnf~~~D~vGH----------------------------------------- 403 (507)
T PRK05434 371 SAYEVTDKLVEAIES------GKYDFIILNFANPDMVGH----------------------------------------- 403 (507)
T ss_pred cHHHHHHHHHHHHhc------cCCCEEEEEecCcchhhc-----------------------------------------
Confidence 456688999999984 578999999887621100
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCEEEEEEcCCCcc--ccccccCCCCCCCCCCCceeeEEEEcCC
Q psy5200 153 HRQFTDLLMTKRLQTLQSVDDAVEKIVKELKDLGELNNTYIIYTSDHGYH--LGQFGLVKGKSFPFEFDIRVPFLMRGPG 230 (271)
Q Consensus 153 ~~~~~~~~~~~y~~~v~~~D~~iG~ll~~L~~~g~~~nTivv~tsDHG~~--~g~h~~~~~k~~~~e~~~~VPlii~~P~ 230 (271)
.. ....|..+|+.+|++||+|+++|++.|. +||||||||.. +++++. ++........+|||||++|+
T Consensus 404 tg-----~~~a~~~AIe~vD~~LGrll~aLk~~g~----ivIITADHGn~e~m~d~~t--g~~~~~HT~~~VPlII~~p~ 472 (507)
T PRK05434 404 TG-----NLEAAVKAVEAVDECLGRVVDAVLKVGG----TLLITADHGNAEQMIDPET--GQPHTAHTTNPVPFILVGGK 472 (507)
T ss_pred CC-----CHHHHHHHHHHHHHHHHHHHHHHHhCCC----EEEEEcCCCcccccccCCC--CCcccCCCCeeeEEEEEECC
Confidence 00 0234678899999999999999998876 89999999943 333221 23334566789999999998
Q ss_pred -CCCCeeeeeecchhHHHHhcCCCccc
Q psy5200 231 -IVPGTMYLLDVLIPQVRKFSSGSLIF 256 (271)
Q Consensus 231 -~~~g~~~~~Di~~PTll~lag~~~~~ 256 (271)
+.....+++||+ ||||+++|++.|.
T Consensus 473 ~i~~~~~sL~DIa-PTIL~LlGi~~P~ 498 (507)
T PRK05434 473 ALRLEGGKLADIA-PTILDLLGLEQPA 498 (507)
T ss_pred cccCCCccHHHHH-HHHHHHhCcCCCC
Confidence 332245799997 9999999999874
No 20
>COG2194 Predicted membrane-associated, metal-dependent hydrolase [General function prediction only]
Probab=99.59 E-value=1.5e-14 Score=132.85 Aligned_cols=154 Identities=21% Similarity=0.269 Sum_probs=105.4
Q ss_pred CChHHHHHHHHHHHHhhhcCCCCCCeEEEecCCCCCCCCCCChHHHhhcCCCCCCCCCCCCCCCCCChhHHHhhhhccCc
Q psy5200 72 YYPDLIANDSVRFLRQSKQSFSKKPIMLVMSFPAPHGPEDSAPQYANMFFNVTSHHTPAYDYAPNPDKQWILQVTRKMQP 151 (271)
Q Consensus 72 ~~~~~~~~~a~~~l~~~~~~~~~~Pffl~~~~~~pH~p~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 151 (271)
-.|+.+...-.+.|+... ++.=|++++..++| |- |.++|+.......|..... .
T Consensus 355 ~~De~LL~~~~~~l~~~~----~~~~~IVLH~~GSH-p~-----Y~~Ryp~~~~kF~p~c~~~----------------~ 408 (555)
T COG2194 355 CYDEALLPDLDQVLAQEL----SQKKLIVLHLMGSH-PN-----YYDRYPKEFAKFTPTCDTN----------------D 408 (555)
T ss_pred cchHHHhHhHHHHhhccC----CCCeEEEEEccCCC-cc-----HhhhCCHHHhccCCCCCcc----------------c
Confidence 356666666667776532 45689999999999 52 3344433221112211100 1
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCEEEEEEcCCCccccccccCCCCCC---CCCCCceeeEEEEc
Q psy5200 152 VHRQFTDLLMTKRLQTLQSVDDAVEKIVKELKDLGELNNTYIIYTSDHGYHLGQFGLVKGKSF---PFEFDIRVPFLMRG 228 (271)
Q Consensus 152 ~~~~~~~~~~~~y~~~v~~~D~~iG~ll~~L~~~g~~~nTivv~tsDHG~~~g~h~~~~~k~~---~~e~~~~VPlii~~ 228 (271)
...-..++..+.|.+.|.|+|..|.++++.|++++- +|.+|++||||+++||.|...+... ..++.+|||||||.
T Consensus 409 ~~~c~~~~lvN~YDNtilYtD~~L~~vi~~Lk~~~~--~~~liY~SDHGEslgEn~~ylhg~p~~~ap~~q~~VP~i~w~ 486 (555)
T COG2194 409 ISSCSQEQLVNCYDNTILYTDYFLSKLIDQLKDKKD--NTSLIYFSDHGESLGENGPYLHGTPYEIAPQEQYHVPFIVWS 486 (555)
T ss_pred cccCcHHHHHHhhhchhhhhHHHHHHHHHHHHhCCC--CeEEEEEcCccHhhccCCcccccCcccCCchhheeeeEEEEE
Confidence 112224567899999999999999999999999974 9999999999999999876533222 56889999999998
Q ss_pred CC--C-CCCe---------------eeeeecchhHHHHhcCCCc
Q psy5200 229 PG--I-VPGT---------------MYLLDVLIPQVRKFSSGSL 254 (271)
Q Consensus 229 P~--~-~~g~---------------~~~~Di~~PTll~lag~~~ 254 (271)
.. . +.++ .++.+++ -|++.+.++..
T Consensus 487 S~~~~~~~~~~~~~~c~~~~~~~~~~~~d~lf-~s~lg~~~~~~ 529 (555)
T COG2194 487 SDKFQQKHPRQKDLRCLNYFAQELSYSHDNLF-HSLLGVSGVKT 529 (555)
T ss_pred ChHHHhhhhhhhHHHHHHHhhhccchhHHHhH-hhccCcccccc
Confidence 74 1 2221 1256665 88888888776
No 21
>TIGR03397 acid_phos_Burk acid phosphatase, Burkholderia-type. A member of this family, AcpA from Burkholderia mallei, has been charactized as a surface-bound glycoprotein with acid phosphatase activity, as can be shown with the colorigenic substrate 5-bromo-4-chloro-3-indolyl phosphate. This family shares regions of sequence similarity with phosphocholine-preferring phospholipase C enzymes (TIGR03396) from many of the same species.
Probab=99.52 E-value=4.5e-14 Score=126.52 Aligned_cols=86 Identities=15% Similarity=0.131 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCEEEEEEcC-CCccccccccCCCCCCCCCCCceeeEEEEcCCCCCCeee-----ee
Q psy5200 166 QTLQSVDDAVEKIVKELKDLGELNNTYIIYTSD-HGYHLGQFGLVKGKSFPFEFDIRVPFLMRGPGIVPGTMY-----LL 239 (271)
Q Consensus 166 ~~v~~~D~~iG~ll~~L~~~g~~~nTivv~tsD-HG~~~g~h~~~~~k~~~~e~~~~VPlii~~P~~~~g~~~-----~~ 239 (271)
+.|...|..||+||++|++.++++|||||||+| ||.. .+|... .|...|++++|||+||.||+.++|.++ +.
T Consensus 363 s~v~~gD~~vg~vl~aL~~~p~w~NTlII~T~DENGG~-~Dhv~p-Pk~~~~ggG~RVP~IVisP~~k~G~v~~~~~dh~ 440 (483)
T TIGR03397 363 ADVAAGDRHIADVIAHLQKSPQWKNMVVIVTYDENGGF-WDHVAP-PKGDRWGPGTRIPAIVVSPFAKKGYVDHTPYDTT 440 (483)
T ss_pred CCHHHHHHHHHHHHHHHHhCccccCcEEEEEEECCCCc-CcCCCC-CCcCCCCCccEEEEEEEECCCCCCcEeCceeeee
Confidence 358999999999999999999999999999999 8843 245443 377889999999999999998888764 99
Q ss_pred ecchhHHHHhcCCCc
Q psy5200 240 DVLIPQVRKFSSGSL 254 (271)
Q Consensus 240 Di~~PTll~lag~~~ 254 (271)
||+ +||++++|++.
T Consensus 441 SiL-~Tie~~~GL~~ 454 (483)
T TIGR03397 441 SIL-RFITRRFGLPP 454 (483)
T ss_pred hHH-HHHHHHhCCCC
Confidence 998 99999999998
No 22
>PF02995 DUF229: Protein of unknown function (DUF229); InterPro: IPR004245 Members of this family are uncharacterised with a long conserved region that may contain several domains.
Probab=99.35 E-value=4.9e-12 Score=116.22 Aligned_cols=179 Identities=18% Similarity=0.271 Sum_probs=118.0
Q ss_pred HHHHHhCCCceEEecccccCCCCCCCCCCCccccccccCcccCcceeccCC----ee-eccCC-CCCCCCChHHHHHHHH
Q psy5200 9 SRNLLYFDISHGYFGKYLNKYNGSYIPPGWREWGALIMNSKYYNYSINMNG----RK-IKHGE-DYYNDYYPDLIANDSV 82 (271)
Q Consensus 9 ~~~Lk~~GY~T~~~Gk~h~~~~~~~~p~Gfd~~~~~~~~~~~~~~~~~~~~----~~-~~~~~-~~~~~~~~~~~~~~a~ 82 (271)
=+.++++||.|++.-.|.......+.-.||.+ ...++|-..+.... .. ...+. -......-+.+.+.+.
T Consensus 209 w~~fk~~GY~T~~~ED~~~~~~f~y~~~GF~~-----~ptDhy~rpf~~~~e~~~~~~~~~~~~C~g~~~~~~~~~dy~~ 283 (497)
T PF02995_consen 209 WKDFKKAGYVTAYAEDWPSIGTFNYRKKGFKK-----QPTDHYLRPFMLAAEKHLNKFRRFGLKCLGGRESHEYLLDYIE 283 (497)
T ss_pred HHHHhhcCceEEEecCcccccccccCCCCCCC-----CCCCcccchHHHHHHHhccceeccCCCccCchHHHHHHHHHHH
Confidence 58899999999999887543333333357765 22344432221110 00 00000 1122334567778888
Q ss_pred HHHHhhhcCCCCCCeEEEecCCCCCCCCCCChHHHhhcCCCCCCCCCCCCCCCCCChhHHHhhhhccCcccHHHHHHHHH
Q psy5200 83 RFLRQSKQSFSKKPIMLVMSFPAPHGPEDSAPQYANMFFNVTSHHTPAYDYAPNPDKQWILQVTRKMQPVHRQFTDLLMT 162 (271)
Q Consensus 83 ~~l~~~~~~~~~~Pffl~~~~~~pH~p~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (271)
+|++... ++|+|.++.+...|+..
T Consensus 284 ~f~~~y~----~~~~F~~~w~~~~~h~~---------------------------------------------------- 307 (497)
T PF02995_consen 284 QFMEAYK----DRPKFGFFWFNSLSHDD---------------------------------------------------- 307 (497)
T ss_pred HHHHHhh----ccceeeEEEeccccccc----------------------------------------------------
Confidence 8888775 78999999988877642
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCEEEEEEcCCCccccccccCCCCCCCCCCCceeeEE-EEcCC-CC--------
Q psy5200 163 KRLQTLQSVDDAVEKIVKELKDLGELNNTYIIYTSDHGYHLGQFGLVKGKSFPFEFDIRVPFL-MRGPG-IV-------- 232 (271)
Q Consensus 163 ~y~~~v~~~D~~iG~ll~~L~~~g~~~nTivv~tsDHG~~~g~h~~~~~k~~~~e~~~~VPli-i~~P~-~~-------- 232 (271)
.+.+..+|+.+-++|+.+.+.|+++||+|||+||||..+|..... .....|+ |.||+ |+-|. +.
T Consensus 308 --~~~~~~~D~~~~~~l~~~~~~g~l~nT~vi~~SDHG~R~g~~r~t--~~G~~Ee--rlP~l~i~lP~~fr~~~p~~~~ 381 (497)
T PF02995_consen 308 --FNGPSSLDDDLLDFLEKLQEEGVLDNTFVIFMSDHGLRFGSFRET--SQGKLEE--RLPFLFISLPPWFREKYPEAVE 381 (497)
T ss_pred --cchhHHHHHHHHHHHHHhhhcCcccccEEEEEcCCCcccCccccc--cccchhh--cCccceeEcCHHHHhHHHHHHH
Confidence 244689999999999999999999999999999999988765332 1223344 78975 44464 21
Q ss_pred ------CCeeeeeecchhHHHHhcCCCcc
Q psy5200 233 ------PGTMYLLDVLIPQVRKFSSGSLI 255 (271)
Q Consensus 233 ------~g~~~~~Di~~PTll~lag~~~~ 255 (271)
...++..||- .||.+++.....
T Consensus 382 nL~~N~~rL~T~~Dlh-~TL~~il~~~~~ 409 (497)
T PF02995_consen 382 NLKENQNRLTTPFDLH-ATLKDILNLQEL 409 (497)
T ss_pred HHHHHHhccCChhHHH-HHHHHHhccccc
Confidence 1225699997 999999986554
No 23
>PLN02538 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
Probab=99.31 E-value=9.1e-11 Score=106.60 Aligned_cols=131 Identities=19% Similarity=0.166 Sum_probs=88.3
Q ss_pred CCCChHHHHHHHHHHHHhhhcCCCCCCeEEEecCCCCCCCCCCChHHHhhcCCCCCCCCCCCCCCCCCChhHHHhhhhcc
Q psy5200 70 NDYYPDLIANDSVRFLRQSKQSFSKKPIMLVMSFPAPHGPEDSAPQYANMFFNVTSHHTPAYDYAPNPDKQWILQVTRKM 149 (271)
Q Consensus 70 ~~~~~~~~~~~a~~~l~~~~~~~~~~Pffl~~~~~~pH~p~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 149 (271)
...+...+++++++.|++ ++.=|++++|..+=.--
T Consensus 401 PeMSA~eVtd~~i~~i~~------~~ydfi~vNfan~DmvG--------------------------------------- 435 (558)
T PLN02538 401 PKMKALEIAEKARDALLS------GKFDQVRVNLANGDMVG--------------------------------------- 435 (558)
T ss_pred CCCCHHHHHHHHHHHHhc------CCCCEEEEeccCccccc---------------------------------------
Confidence 345567899999999975 46778999887762110
Q ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCEEEEEEcCCCcc--cc---ccccC-----CC--CCCCCC
Q psy5200 150 QPVHRQFTDLLMTKRLQTLQSVDDAVEKIVKELKDLGELNNTYIIYTSDHGYH--LG---QFGLV-----KG--KSFPFE 217 (271)
Q Consensus 150 ~~~~~~~~~~~~~~y~~~v~~~D~~iG~ll~~L~~~g~~~nTivv~tsDHG~~--~g---~h~~~-----~~--k~~~~e 217 (271)
. ......+..+|..+|.+||+|++++++.| .++|+|||||-. +- .||.. +. ..+.+
T Consensus 436 --H-----tG~~ea~ikAIE~vD~~Lg~Il~al~~~g----~~liITADHGNaE~M~d~~~~G~p~~~~~Gtp~~~t~H- 503 (558)
T PLN02538 436 --H-----TGDLEATIVACEAVDAAVKEILDAVEQVG----GIYLVTADHGNAEDMVKRDKSGKPLLDKDGNPQILTSH- 503 (558)
T ss_pred --C-----CCCHHHHHHHHHHHHHHHHHHHHHHHhcC----CEEEEeCCCCCchhhccccccCCccccccCCCCCCCCC-
Confidence 0 00234567889999999999999998665 689999999932 11 12221 00 01111
Q ss_pred CCceeeEEEEcCCCCCC-e----e---eeeecchhHHHHhcCCCccchh
Q psy5200 218 FDIRVPFLMRGPGIVPG-T----M---YLLDVLIPQVRKFSSGSLIFIM 258 (271)
Q Consensus 218 ~~~~VPlii~~P~~~~g-~----~---~~~Di~~PTll~lag~~~~~l~ 258 (271)
..-.||+||.+|++..+ . + .+.||. ||||+++|++.|.-|
T Consensus 504 T~npVP~Ii~g~~~~~~~~l~~~l~~~gLaDVA-pTIL~lLGl~~P~em 551 (558)
T PLN02538 504 TLAPVPVAIGGPGLPPGVRFRDDLPTAGLANVA-ATVMNLHGFEAPADY 551 (558)
T ss_pred CCCCcCEEEEeCCcccCcccccCccCCcHHhHH-HHHHHHhCCCCchhc
Confidence 12359999999975332 1 1 389996 999999999998433
No 24
>COG1015 DeoB Phosphopentomutase [Carbohydrate transport and metabolism]
Probab=99.20 E-value=3e-10 Score=97.10 Aligned_cols=158 Identities=16% Similarity=0.131 Sum_probs=106.7
Q ss_pred chhhhHHHHHhCCCceEEecccccCCCCCCCCCCCccccccccCcccCcceeccCCeeeccCCCCCCCCChHHHHHHHHH
Q psy5200 4 PVELTSRNLLYFDISHGYFGKYLNKYNGSYIPPGWREWGALIMNSKYYNYSINMNGRKIKHGEDYYNDYYPDLIANDSVR 83 (271)
Q Consensus 4 p~~~~~~~Lk~~GY~T~~~Gk~h~~~~~~~~p~Gfd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 83 (271)
|.+|+.+.|+++|..|..|||.--.++ ..|..+-. ..-......|.+++
T Consensus 225 ~~~tvl~~L~e~g~~vi~IGKI~DI~~----~~Git~~~---------------------------~~~~n~~~~d~tl~ 273 (397)
T COG1015 225 FAPTVLDKLKEAGRPVIAIGKIADIYA----GQGITEKV---------------------------KAVSNMDGMDVTLE 273 (397)
T ss_pred ChhhHHHHHHHcCCceEEEeeHHhhhc----cccccccc---------------------------cCCCcHHHHHHHHH
Confidence 346779999999999999999632211 12222211 01124456788888
Q ss_pred HHHhhhcCCCCCCeEEEecCCCCCCCCCCChHHHhhcCCCCCCCCCCCCCCCCCChhHHHhhhhccCcccHHHHHHHHHH
Q psy5200 84 FLRQSKQSFSKKPIMLVMSFPAPHGPEDSAPQYANMFFNVTSHHTPAYDYAPNPDKQWILQVTRKMQPVHRQFTDLLMTK 163 (271)
Q Consensus 84 ~l~~~~~~~~~~Pffl~~~~~~pH~p~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (271)
-++++. .--|++.++.+.-.-|. .++....
T Consensus 274 ~~~~~~-----~~~~vFtNlVdfD~~yG---------------------------------------------HRrDv~g 303 (397)
T COG1015 274 EMKTAE-----FNGLVFTNLVDFDSLYG---------------------------------------------HRRDVAG 303 (397)
T ss_pred HHhcCC-----CCcEEEEeeeecccccc---------------------------------------------cccchHH
Confidence 887642 33566666665432221 1223467
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCEEEEEEcCCCccccccccCCCCCCCCCCCceeeEEEEcCCCCCCee----eee
Q psy5200 164 RLQTLQSVDDAVEKIVKELKDLGELNNTYIIYTSDHGYHLGQFGLVKGKSFPFEFDIRVPFLMRGPGIVPGTM----YLL 239 (271)
Q Consensus 164 y~~~v~~~D~~iG~ll~~L~~~g~~~nTivv~tsDHG~~~g~h~~~~~k~~~~e~~~~VPlii~~P~~~~g~~----~~~ 239 (271)
|.+++..+|+.+.+|++.|+ ++-++|+|+|||.- .-| .....- .=+||+|+++|+++++.. +..
T Consensus 304 Ya~aLe~FD~rL~e~~~~l~-----edDlLiiTADHGnD----PT~-~gTdHT--RE~iPvl~y~~~~k~~~lg~r~tfA 371 (397)
T COG1015 304 YAAALEEFDRRLPELIENLR-----EDDLLIITADHGND----PTW-GGTDHT--REYIPVLVYGPGLKPGSLGTRETFA 371 (397)
T ss_pred HHHHHHHHHHHHHHHHHhcC-----CCCEEEEecCCCCC----CCC-CCCCcc--ccccceEEEcCCccCCcccccccHH
Confidence 89999999999999999998 55689999999964 122 111111 126999999999876542 488
Q ss_pred ecchhHHHHhcCCCcc
Q psy5200 240 DVLIPQVRKFSSGSLI 255 (271)
Q Consensus 240 Di~~PTll~lag~~~~ 255 (271)
||. .|+++..|++++
T Consensus 372 DiG-aTvA~~fgv~~~ 386 (397)
T COG1015 372 DIG-ATVADNFGVSPP 386 (397)
T ss_pred HHH-HHHHHHhCCCCc
Confidence 997 999999999998
No 25
>cd00016 alkPPc Alkaline phosphatase homologues; alkaline phosphatases are non-specific phosphomonoesterases that catalyze the hydrolysis reaction via a phosphoseryl intermediate to produce inorganic phosphate and the corresponding alcohol, optimally at high pH. Alkaline phosphatase exists as a dimer, each monomer binding 2 zinc atoms and one magnesium atom, which are essential for enzymatic activity.
Probab=99.10 E-value=6.4e-09 Score=92.50 Aligned_cols=124 Identities=17% Similarity=0.132 Sum_probs=88.3
Q ss_pred hHHHHHHHHHHHHhhhcCCCCCCeEEEecCCCCCCCCCCChHHHhhcCCCCCCCCCCCCCCCCCChhHHHhhhhccCccc
Q psy5200 74 PDLIANDSVRFLRQSKQSFSKKPIMLVMSFPAPHGPEDSAPQYANMFFNVTSHHTPAYDYAPNPDKQWILQVTRKMQPVH 153 (271)
Q Consensus 74 ~~~~~~~a~~~l~~~~~~~~~~Pffl~~~~~~pH~p~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 153 (271)
-..+++.|+++|++. .++|||++.....|..-...
T Consensus 233 L~emt~~al~~L~~~-----~~gFfl~ve~~~iD~~gH~~---------------------------------------- 267 (384)
T cd00016 233 LAEMTEKAIDVLSKN-----PNGFFLMVEGGRIDHAHHAN---------------------------------------- 267 (384)
T ss_pred HHHHHHHHHHHHHhc-----CCcEEEEEeCCCCCcccCCC----------------------------------------
Confidence 456789999999753 58999999988887643211
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCEEEEEEcCCCccc---ccc----ccCCC----------C----
Q psy5200 154 RQFTDLLMTKRLQTLQSVDDAVEKIVKELKDLGELNNTYIIYTSDHGYHL---GQF----GLVKG----------K---- 212 (271)
Q Consensus 154 ~~~~~~~~~~y~~~v~~~D~~iG~ll~~L~~~g~~~nTivv~tsDHG~~~---g~h----~~~~~----------k---- 212 (271)
....|..++..+|+.|+.+++.++ ..+||+||+|||||... |.- ...+. +
T Consensus 268 ------d~~~~~~~l~~~D~av~~~l~~l~---~~~dTLiIvTADHg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (384)
T cd00016 268 ------DAAGALSETLAFDDAVEAALDFAK---KDGDTLVVVTADHSHGGTILGYAGRGNPILGLADAPELDVDGLPYTT 338 (384)
T ss_pred ------cHHHHHHHHHHHHHHHHHHHHHhh---CCCCeEEEEECCCCCCccccCCCCCCCcccccccccccccCCCCceE
Confidence 012357789999999999999998 36899999999999752 110 00000 0
Q ss_pred -----CCCCCCCceeeEEEEcCCC--CCCeeeeeecchhHHHHhcCC
Q psy5200 213 -----SFPFEFDIRVPFLMRGPGI--VPGTMYLLDVLIPQVRKFSSG 252 (271)
Q Consensus 213 -----~~~~e~~~~VPlii~~P~~--~~g~~~~~Di~~PTll~lag~ 252 (271)
.+.--.+.-||++.++|+. -.|...+.||+ +.|+.++++
T Consensus 339 ~~y~~~~~~Htg~~Vpv~a~Gp~a~~f~g~~ent~I~-~~i~~al~~ 384 (384)
T cd00016 339 LTYANTTGTHGGEDVPVFAYGPGSHLFRGVMENTEIA-HVMAYALGL 384 (384)
T ss_pred EEecCCCCCCcCceeeEEeecCCccccCcceecHHHH-HHHHHHhcC
Confidence 1111234569999999993 46778899997 999988764
No 26
>PF01676 Metalloenzyme: Metalloenzyme superfamily; InterPro: IPR006124 This domain unites alkaline phosphatase, N-acetylgalactosamine-4-sulphatase, and cerebroside sulphatase, enzymes with known three-dimensional structures, with phosphopentomutase, 2,3-bisphosphoglycerate-independent phosphoglycerate mutase, phosphoglycerol transferase, phosphonate monoesterase, streptomycin-6-phosphate phosphatase, alkaline phosphodiesterase/nucleotide pyrophosphatase PC-1, and several closely related sulphatases. This domain is also related to alkaline phosphatase IPR001952 from INTERPRO []. The most conserved residues are probably involved in metal binding and catalysis.; GO: 0003824 catalytic activity, 0046872 metal ion binding; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3UN5_F 3UN3_B 3M8Y_C 3UO0_B 3UN2_B 3UNY_E ....
Probab=99.10 E-value=2.3e-10 Score=96.43 Aligned_cols=86 Identities=21% Similarity=0.339 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCEEEEEEcCCCccccccccCCCCCCCCCCCceeeEEEEcCCCCCCe----e
Q psy5200 161 MTKRLQTLQSVDDAVEKIVKELKDLGELNNTYIIYTSDHGYHLGQFGLVKGKSFPFEFDIRVPFLMRGPGIVPGT----M 236 (271)
Q Consensus 161 ~~~y~~~v~~~D~~iG~ll~~L~~~g~~~nTivv~tsDHG~~~g~h~~~~~k~~~~e~~~~VPlii~~P~~~~g~----~ 236 (271)
...|..+++.+|+.|++|++++++ +++++|+|||||...-- +.+.+ ..-.||+++++|+++... .
T Consensus 160 ~~~~~~~ie~~D~~l~~l~~~~~~----~~~~liiTaDHg~~~~~------~~~~H-t~~~VPll~~g~~~~~~~~~~~~ 228 (252)
T PF01676_consen 160 PEAYIEAIERIDRFLGRLLEALDK----EDDLLIITADHGNDETM------GHTSH-TREPVPLLIYGPGVRGDSVGEFG 228 (252)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH----TTEEEEEEESSBSTTTS------BSSS--B-B-EEEEEECTTEEE-SC-STS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc----CCCEEEEECCCCCcccc------CCcCC-CCceEEEEEEeCCCccCccCcCC
Confidence 356889999999999999999973 67899999999975211 11111 122699999999865333 3
Q ss_pred eeeecchhHHHHhcCCCccchh
Q psy5200 237 YLLDVLIPQVRKFSSGSLIFIM 258 (271)
Q Consensus 237 ~~~Di~~PTll~lag~~~~~l~ 258 (271)
++.|+. |||+++.|++.++.+
T Consensus 229 ~~~di~-~ti~~~~G~~~~~~~ 249 (252)
T PF01676_consen 229 ELADIA-PTILELLGLELPEEM 249 (252)
T ss_dssp BCGHHH-HHHHHHHTGGHHTTC
T ss_pred EEehHH-HHHHHHcCCCchHhh
Confidence 488986 999999999988544
No 27
>KOG4513|consensus
Probab=98.95 E-value=2.2e-08 Score=85.77 Aligned_cols=88 Identities=27% Similarity=0.395 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCEEEEEEcCCCcc--ccccccCCCCCCCCCCCceeeEEEEcCCCCCCeee-----
Q psy5200 165 LQTLQSVDDAVEKIVKELKDLGELNNTYIIYTSDHGYH--LGQFGLVKGKSFPFEFDIRVPFLMRGPGIVPGTMY----- 237 (271)
Q Consensus 165 ~~~v~~~D~~iG~ll~~L~~~g~~~nTivv~tsDHG~~--~g~h~~~~~k~~~~e~~~~VPlii~~P~~~~g~~~----- 237 (271)
..+|...|.+||+|+++.++.| -+.|+|+|||.. +-..+ ++|.+.+ ...+||++|..||..+|...
T Consensus 428 v~AcEatD~aig~Iy~A~~~~~----y~lvvTADHGNAEkMv~~d--gGk~tsH-T~~~VPl~i~~pg~~~g~~f~~~~d 500 (531)
T KOG4513|consen 428 VVACEATDEAIGKIYDAIEQVG----YILVVTADHGNAEKMVKRD--GGKLTSH-TLKPVPLAIGGPGLVKGVRFRGDVD 500 (531)
T ss_pred hhHHHHHHHHHHHHHHHHHhcC----cEEEEEcCCCCHHHhccCC--CCccccc-cccccceEecCCccccceeeccccc
Confidence 4568999999999999999876 378899999964 21111 2343322 34589999999996555432
Q ss_pred ----eeecchhHHHHhcCCCccchhhh
Q psy5200 238 ----LLDVLIPQVRKFSSGSLIFIMSF 260 (271)
Q Consensus 238 ----~~Di~~PTll~lag~~~~~l~~~ 260 (271)
+.|+. ||+|.+.|.+.||-|..
T Consensus 501 t~p~L~dVA-pTVl~imG~p~PsEmtg 526 (531)
T KOG4513|consen 501 TDPGLADVA-PTVLNIMGFPAPSEMTG 526 (531)
T ss_pred cCchhhhhh-HHHHHHhCCCCcccccc
Confidence 89986 99999999999985543
No 28
>COG0696 GpmI Phosphoglyceromutase [Carbohydrate transport and metabolism]
Probab=98.59 E-value=1.6e-06 Score=77.21 Aligned_cols=85 Identities=22% Similarity=0.368 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCEEEEEEcCCCcc--cccc-ccCCCCCCCCCCCceeeEEEEc-CCCCCCe-eeee
Q psy5200 165 LQTLQSVDDAVEKIVKELKDLGELNNTYIIYTSDHGYH--LGQF-GLVKGKSFPFEFDIRVPFLMRG-PGIVPGT-MYLL 239 (271)
Q Consensus 165 ~~~v~~~D~~iG~ll~~L~~~g~~~nTivv~tsDHG~~--~g~h-~~~~~k~~~~e~~~~VPlii~~-P~~~~g~-~~~~ 239 (271)
-.+|..+|.+||++++++++.|. .+++|+|||-+ +.+. |-...+ ....-||+|+-. -+++... -.+.
T Consensus 412 iKAvEavD~~lg~ivd~~~~~gg----~~~iTaDHGNaE~m~d~~g~p~Ta----HT~npVp~i~~~~~~v~~~~~g~La 483 (509)
T COG0696 412 IKAVEAVDECLGRIVDAVKKNGG----TLLITADHGNAEQMSDPAGNPHTA----HTTNPVPVIYTGKKGVKARKSGKLA 483 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCC----eEEEeecCcchhhccCCCCCceec----cccCCccEEEEcCCcceeeeccchh
Confidence 45689999999999999998763 57789999964 2221 111111 233469999997 3443222 4588
Q ss_pred ecchhHHHHhcCCCccchh
Q psy5200 240 DVLIPQVRKFSSGSLIFIM 258 (271)
Q Consensus 240 Di~~PTll~lag~~~~~l~ 258 (271)
||+ ||||+++|++.|.-|
T Consensus 484 diA-PTiL~llg~~~P~eM 501 (509)
T COG0696 484 DIA-PTILDLLGLEIPAEM 501 (509)
T ss_pred hhh-HHHHHHcCCCcchhh
Confidence 996 999999999998443
No 29
>KOG2125|consensus
Probab=98.30 E-value=1.7e-06 Score=79.89 Aligned_cols=83 Identities=22% Similarity=0.303 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCEEEEEEcCCCcc-ccccccCCCCCCCCCCCceeeEEEEcCC--C----C--CCee
Q psy5200 166 QTLQSVDDAVEKIVKELKDLGELNNTYIIYTSDHGYH-LGQFGLVKGKSFPFEFDIRVPFLMRGPG--I----V--PGTM 236 (271)
Q Consensus 166 ~~v~~~D~~iG~ll~~L~~~g~~~nTivv~tsDHG~~-~g~h~~~~~k~~~~e~~~~VPlii~~P~--~----~--~g~~ 236 (271)
+..+.+|+-++++.+++.+..--++|++|+++|||.. .|.||.. .. +.+.+|+.+..|. + . ..++
T Consensus 218 ~KLkEmDeiv~~I~~~~~~~~s~d~tllil~gDHGM~e~GnHGGs-----s~-~ET~s~l~~~~~N~~~~d~~~a~~~rv 291 (760)
T KOG2125|consen 218 AKLKEMDEIVKRIHDYLMEHRSGDQTLLILCGDHGMTESGNHGGS-----SP-GETSSPLLFLLPNSNISDWLAAGLERV 291 (760)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCCceEEEEEccccccccCCCCCC-----Cc-ccccccEEEEecCCCCcccchhccchh
Confidence 4568999999999999999988899999999999976 4666543 12 3458999999994 1 1 2345
Q ss_pred eeeecchhHHHHhcCCCcc
Q psy5200 237 YLLDVLIPQVRKFSSGSLI 255 (271)
Q Consensus 237 ~~~Di~~PTll~lag~~~~ 255 (271)
..+|+. |||+.+.|++.|
T Consensus 292 ~QiDl~-pTI~~llgvpIP 309 (760)
T KOG2125|consen 292 EQIDLA-PTIALLLGVPIP 309 (760)
T ss_pred hhhhhH-HHHHHHhCCCcc
Confidence 599996 999999999988
No 30
>KOG2124|consensus
Probab=98.08 E-value=7.4e-06 Score=77.44 Aligned_cols=85 Identities=20% Similarity=0.281 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCEEEEEEcCCCcc-ccccccCCCCCCCCCCCceeeEEEEcCCCCCCe-------
Q psy5200 164 RLQTLQSVDDAVEKIVKELKDLGELNNTYIIYTSDHGYH-LGQFGLVKGKSFPFEFDIRVPFLMRGPGIVPGT------- 235 (271)
Q Consensus 164 y~~~v~~~D~~iG~ll~~L~~~g~~~nTivv~tsDHG~~-~g~h~~~~~k~~~~e~~~~VPlii~~P~~~~g~------- 235 (271)
|...+.++|+.|-++.+.+++.=-.+.|-.+||+|||.. +|+||-. .++.++.|++.|+-|++...
T Consensus 222 y~~nl~~~d~~i~~~y~l~e~~fnD~kTayi~TaDhgms~~gsHg~G------~~~~~~TPlv~WGaGik~~~~n~~~~~ 295 (883)
T KOG2124|consen 222 YRENLKYTDKGIRELYDLFENYFNDGKTAYIFTADHGMSDFGSHGDG------HPENTRTPLVAWGAGIKYPVPNSEQNF 295 (883)
T ss_pred HHHHhhcCCccHHHHHHHHHHHhcCCcceEEEehhcccccccccCCC------CcccccChHHHhcCCCCccCCCCCcCC
Confidence 566789999999999999998766889999999999986 5888753 26788999999998853111
Q ss_pred ------------eeeeecchhHHHHhcCCCcc
Q psy5200 236 ------------MYLLDVLIPQVRKFSSGSLI 255 (271)
Q Consensus 236 ------------~~~~Di~~PTll~lag~~~~ 255 (271)
+...||. |-+-.+.|.+.|
T Consensus 296 ~~~~~~~~~~~dl~Qa~IA-pLMS~LiGlp~P 326 (883)
T KOG2124|consen 296 DEYSLTEIKRHDLNQADIA-PLMSYLIGLPPP 326 (883)
T ss_pred ccccccccchhhhhHHHHH-HHHHHHhCCCCc
Confidence 1266775 999999999887
No 31
>PRK10518 alkaline phosphatase; Provisional
Probab=98.01 E-value=0.0001 Score=66.94 Aligned_cols=84 Identities=21% Similarity=0.232 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCEEEEEEcCCCccc---c-cc---ccCC------CCC-----------CCCCCCc
Q psy5200 165 LQTLQSVDDAVEKIVKELKDLGELNNTYIIYTSDHGYHL---G-QF---GLVK------GKS-----------FPFEFDI 220 (271)
Q Consensus 165 ~~~v~~~D~~iG~ll~~L~~~g~~~nTivv~tsDHG~~~---g-~h---~~~~------~k~-----------~~~e~~~ 220 (271)
...+-.+|+.|+..++..++. +|||||+|+||+..+ | +. |+.. ++. +---.+.
T Consensus 366 i~E~~~fD~AV~~A~~~~~~~---~dTLVIVTADH~h~~~i~g~~~~~~g~~~~~~~~dg~~~~l~y~~g~g~s~~HtG~ 442 (476)
T PRK10518 366 IGETVDLDEAVQKALEFARKD---GNTLVIVTADHAHSSQIIAPDAKAPGLTQALNTKDGAVMVVSYGNSEEDSQEHTGT 442 (476)
T ss_pred HHHHHHHHHHHHHHHHHHhcC---CCeEEEEEccCCCcceecCCCCCCCCcccccccCCCCeeEEEeccCCCCCcCcCCc
Confidence 455778999999999999976 499999999998764 2 00 1100 000 1122366
Q ss_pred eeeEEEEcCC--CCCCeeeeeecchhHHHHhcCC
Q psy5200 221 RVPFLMRGPG--IVPGTMYLLDVLIPQVRKFSSG 252 (271)
Q Consensus 221 ~VPlii~~P~--~~~g~~~~~Di~~PTll~lag~ 252 (271)
.||+.-++|+ .-.|.....||+ -+|..++++
T Consensus 443 dV~v~A~GP~A~~f~G~~eqt~if-~~m~~Al~~ 475 (476)
T PRK10518 443 QLRIAAYGPHAANVVGLTDQTDLF-YTMKDALGL 475 (476)
T ss_pred eeEEEecCCcccccccceeccHHH-HHHHHHhCC
Confidence 7999999998 346777788986 888888775
No 32
>PRK04024 cofactor-independent phosphoglycerate mutase; Provisional
Probab=97.93 E-value=2.8e-05 Score=69.90 Aligned_cols=62 Identities=23% Similarity=0.440 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCEEEEEEcCCCccccccccCCCCCCCCCCCceeeEEEEcCCCCCCe
Q psy5200 161 MTKRLQTLQSVDDAVEKIVKELKDLGELNNTYIIYTSDHGYHLGQFGLVKGKSFPFEFDIRVPFLMRGPGIVPGT 235 (271)
Q Consensus 161 ~~~y~~~v~~~D~~iG~ll~~L~~~g~~~nTivv~tsDHG~~~g~h~~~~~k~~~~e~~~~VPlii~~P~~~~g~ 235 (271)
...+..+|..+|.+|+++++.++. ++++||+|||||... ....|... -||+||++|++....
T Consensus 313 ~~~k~~aiE~iD~~l~~il~~l~~----~~~~liITaDHgtp~---~~~~HT~~------pVP~ii~g~~v~~d~ 374 (412)
T PRK04024 313 FEGKVEVIEKIDKMLGYILDNLDL----DEVYIAVTGDHSTPV---EVKDHSGD------PVPILIYGPGVRVDD 374 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc----CCCEEEEecCCCCCc---ccccCCCC------CEeEEEEcCCccCCC
Confidence 446788999999999999999863 456899999999843 11111111 399999999975433
No 33
>PF11658 DUF3260: Protein of unknown function (DUF3260); InterPro: IPR017744 This protein was identified by the partial phylogenetic profiling algorithm [] as part of the system for cellulose biosynthesis in bacteria, and in fact is found in cellulose biosynthesis gene regions. The protein was designated YhjU in Salmonella enteritidis, where disruption of its gene disrupts cellulose biosynthesis and biofilm formation [].
Probab=97.87 E-value=0.00024 Score=64.06 Aligned_cols=182 Identities=15% Similarity=0.163 Sum_probs=104.9
Q ss_pred chhhhHHHHHhCCCceEEecccccCCCCCCCCCCCccccccccCc-ccCcceeccCCee-eccCCCCCCCCChHHHHHHH
Q psy5200 4 PVELTSRNLLYFDISHGYFGKYLNKYNGSYIPPGWREWGALIMNS-KYYNYSINMNGRK-IKHGEDYYNDYYPDLIANDS 81 (271)
Q Consensus 4 p~~~~~~~Lk~~GY~T~~~Gk~h~~~~~~~~p~Gfd~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a 81 (271)
.+|.|-+-|++.||++... =+|.| -||.|...+... .--.......|.. .-.+|+...-|.|..+.+
T Consensus 265 ~qC~LF~nLa~lGf~~~l~-mnHdG--------~Fd~Fl~~ir~~G~l~~pl~s~~g~~~~~~~FDgSpI~~D~~vL~-- 333 (518)
T PF11658_consen 265 QQCYLFDNLAKLGFTQQLM-MNHDG--------HFDNFLQEIREDGGLQAPLMSQAGLPVALHSFDGSPIYDDLAVLN-- 333 (518)
T ss_pred ccccHHHHHHhcCCchhhc-cCCCC--------ccccHHHHHHHcCCCCCCCcCCCCCchHhhccCCCcccchHHHHH--
Confidence 3455789999999999766 11221 266654433221 1111111112211 124555555566655655
Q ss_pred HHHHHhhhcCCCCCCeEEEecCCCCCCCCCCChHHHhhcCCCCCCCCCCCCCCCCCChhHHHhhhhccCcccHHHHHHHH
Q psy5200 82 VRFLRQSKQSFSKKPIMLVMSFPAPHGPEDSAPQYANMFFNVTSHHTPAYDYAPNPDKQWILQVTRKMQPVHRQFTDLLM 161 (271)
Q Consensus 82 ~~~l~~~~~~~~~~Pffl~~~~~~pH~p~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (271)
+|++++.+ .+++|--++.++..-|..-..+..-. + . ..
T Consensus 334 -rW~~~r~~-~~~~~~A~~YNtIsLHDGNr~~~~~~-------------------------------~---~------s~ 371 (518)
T PF11658_consen 334 -RWLQQREK-SDDGRVATFYNTISLHDGNRLPGSDR-------------------------------L---N------SL 371 (518)
T ss_pred -HHHHHHhh-cCCCceEEEEeeeecccCCccCCCCC-------------------------------c---c------cc
Confidence 56665532 46889999999999998754332100 0 0 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCCEEEEEEcCCCccc-cccccCCC-CCCCCCCCceeeEEEEcCCC---CCCee
Q psy5200 162 TKRLQTLQSVDDAVEKIVKELKDLGELNNTYIIYTSDHGYHL-GQFGLVKG-KSFPFEFDIRVPFLMRGPGI---VPGTM 236 (271)
Q Consensus 162 ~~y~~~v~~~D~~iG~ll~~L~~~g~~~nTivv~tsDHG~~~-g~h~~~~~-k~~~~e~~~~VPlii~~P~~---~~g~~ 236 (271)
..|-.-...+=+.+.++++.|+++| .+.+||+.-.||..+ |+.....+ .......-+|||.-|+.=|. .+|..
T Consensus 372 ~sY~~Ra~~Llddl~~F~~~Le~Sg--R~v~vv~VPEHGAAlrGDk~QiaGLReIPsP~IthvPVgiK~iG~~~~~~g~~ 449 (518)
T PF11658_consen 372 ASYKPRAQKLLDDLDRFFDELEKSG--RKVMVVVVPEHGAALRGDKMQIAGLREIPSPSITHVPVGIKFIGMKAPHQGSP 449 (518)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHcC--CcEEEEEecCccccccccchhhccccCCCCCcceecceEEEEeccCCCCCCCC
Confidence 1122223344456788999999998 789999999999875 54321111 12345567899988876664 24555
Q ss_pred eeee
Q psy5200 237 YLLD 240 (271)
Q Consensus 237 ~~~D 240 (271)
.++|
T Consensus 450 ~~I~ 453 (518)
T PF11658_consen 450 VHID 453 (518)
T ss_pred eEEC
Confidence 5666
No 34
>KOG2126|consensus
Probab=97.81 E-value=5.2e-05 Score=71.98 Aligned_cols=77 Identities=18% Similarity=0.366 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCCEEEEEEcCCCcc-ccccccCCCCCCCCCCCceeeEEEEcCC-----CCC----Cee
Q psy5200 167 TLQSVDDAVEKIVKELKDLGELNNTYIIYTSDHGYH-LGQFGLVKGKSFPFEFDIRVPFLMRGPG-----IVP----GTM 236 (271)
Q Consensus 167 ~v~~~D~~iG~ll~~L~~~g~~~nTivv~tsDHG~~-~g~h~~~~~k~~~~e~~~~VPlii~~P~-----~~~----g~~ 236 (271)
-+..+|+.|+++++.|+ |||+.|++||||.- -|+||.- .+..++--++++.+. .++ +..
T Consensus 234 KL~qmD~vI~~ii~~md-----edTlLvVmGDHGMt~nGdHGGd------S~dEv~a~lf~ySKk~~f~~lp~~~~~~~~ 302 (895)
T KOG2126|consen 234 KLVQMDRVINEIIKKMD-----EDTLLVVMGDHGMTDNGDHGGD------SEDEVEATLFAYSKKHRFALLPPENKVESI 302 (895)
T ss_pred HHHHHHHHHHHHHHHhc-----cCeeEEEecCCCCCCCCCCCCc------cHHHhhhheeEEecCccccCCCCCCCccce
Confidence 36789999999999999 99999999999975 4888743 223345556666543 233 335
Q ss_pred eeeecchhHHHHhcCCCcc
Q psy5200 237 YLLDVLIPQVRKFSSGSLI 255 (271)
Q Consensus 237 ~~~Di~~PTll~lag~~~~ 255 (271)
..+|+. ||+.-++|.+.|
T Consensus 303 ~QIDLV-ptlalllGlPIP 320 (895)
T KOG2126|consen 303 EQIDLV-PTLALLLGLPIP 320 (895)
T ss_pred eeehhH-hHHHHHhCCCCC
Confidence 599986 999999999988
No 35
>PF01663 Phosphodiest: Type I phosphodiesterase / nucleotide pyrophosphatase; InterPro: IPR002591 This family consists of phosphodiesterases, including human plasma-cell membrane glycoprotein PC-1 / alkaline phosphodiesterase I / nucleotide pyrophosphatase (nppase). These enzymes catalyse the cleavage of phosphodiester and phosphosulphate bonds in NAD, deoxynucleotides and nucleotide sugars []. Another member of this family is ATX an autotaxin, tumor cell motility-stimulating protein which exhibits type I phosphodiesterases activity []. The alignment encompasses the active site [, ]. Also present within this family is 60 kDa Ca2+-ATPase from Myroides odoratus []. This signature also hits a number of ethanolamine phosphate transferase involved in glycosylphosphatidylinositol-anchor biosynthesis.; GO: 0003824 catalytic activity; PDB: 2XRG_A 2XR9_A 3T02_A 3T01_A 3SZZ_A 3SZY_A 3T00_A 3NKM_A 3NKN_A 3NKR_A ....
Probab=97.79 E-value=3.6e-05 Score=68.11 Aligned_cols=41 Identities=32% Similarity=0.477 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCEEEEEEcCCCcccc
Q psy5200 164 RLQTLQSVDDAVEKIVKELKDLGELNNTYIIYTSDHGYHLG 204 (271)
Q Consensus 164 y~~~v~~~D~~iG~ll~~L~~~g~~~nTivv~tsDHG~~~g 204 (271)
+..+++.+|.+||+|+++|++.+..++|.||++||||..-.
T Consensus 208 ~~~~~~~~D~~ig~l~~~l~~~~~~~~~~iiv~SDHG~~~~ 248 (365)
T PF01663_consen 208 IEDAYRRIDQAIGRLLEALDENGLLEDTNIIVTSDHGMTPV 248 (365)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT-TTTEEEEEEES---EEE
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCCceEEEEEccCccccc
Confidence 45678999999999999999999999999999999998754
No 36
>PF04185 Phosphoesterase: Phosphoesterase family; InterPro: IPR007312 This entry includes both bacterial phospholipase C enzymes (3.1.4.3 from EC) and eukaryotic acid phosphatases 3.1.3.2 from EC.; GO: 0016788 hydrolase activity, acting on ester bonds; PDB: 2D1G_B.
Probab=97.76 E-value=5.2e-05 Score=67.75 Aligned_cols=86 Identities=19% Similarity=0.113 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCCEEEEEEcCCCccccccccCC-----------CCCCCCCCCceeeEEEEcCCCCCCe
Q psy5200 167 TLQSVDDAVEKIVKELKDLGELNNTYIIYTSDHGYHLGQFGLVK-----------GKSFPFEFDIRVPFLMRGPGIVPGT 235 (271)
Q Consensus 167 ~v~~~D~~iG~ll~~L~~~g~~~nTivv~tsDHG~~~g~h~~~~-----------~k~~~~e~~~~VPlii~~P~~~~g~ 235 (271)
.++.-|..|++++++|.....+++|+||+|=|-+.-+-+|-..- +....+--+.|||+||..|-+++|.
T Consensus 275 ~~~~gd~~l~~vv~ai~~sp~W~~T~iiIt~DE~gG~~DHV~pp~~~~~~~~~~~g~~~~~g~G~RVP~ivISP~~k~G~ 354 (376)
T PF04185_consen 275 VIADGDAFLARVVEAIRNSPYWKNTAIIITYDENGGFYDHVPPPRSPVPNPDEWVGPFGFDGLGPRVPAIVISPYAKGGT 354 (376)
T ss_dssp -HHHHHHHHHHHHHHHHCSTTGGGEEEEEEES--TT----------TTTT------STT------B--EEEESTTB-TTE
T ss_pred chhHHHHHHHHHHHHHhcCcCcCCeEEEEEEecCCCcCCCCCCCCCCccccccccccCCCCCccccCCeEEeCCCCCCCc
Confidence 35889999999999999999999999999987765444552210 0111233489999999999999998
Q ss_pred ee-----eeecchhHHHHhcCCC
Q psy5200 236 MY-----LLDVLIPQVRKFSSGS 253 (271)
Q Consensus 236 ~~-----~~Di~~PTll~lag~~ 253 (271)
|. +.-|+ -||-++.|++
T Consensus 355 v~~~~ydh~Sil-rtie~~~gLP 376 (376)
T PF04185_consen 355 VDHTPYDHTSIL-RTIEERFGLP 376 (376)
T ss_dssp EE---EETHHHH-HHHHHHHT--
T ss_pred EeCCccchhHHH-HHHHHHhCCC
Confidence 76 45565 8888877764
No 37
>TIGR03368 cellulose_yhjU cellulose synthase operon protein YhjU. This protein was identified by the partial phylogenetic profiling algorithm (PubMed:16930487) as part of the system for cellulose biosynthesis in bacteria, and in fact is found in cellulose biosynthesis gene regions. The protein was designated YhjU in Salmonella enteritidis, where disruption of its gene disrupts cellulose biosynthesis and biofilm formation (PubMed:11929533).
Probab=97.72 E-value=0.00085 Score=60.31 Aligned_cols=178 Identities=15% Similarity=0.166 Sum_probs=100.5
Q ss_pred hhhHHHHHhCCCceEEecccccCCCCCCCCCC-CccccccccCc-ccCcceeccCCee-eccCCCCCCCCChHHHHHHHH
Q psy5200 6 ELTSRNLLYFDISHGYFGKYLNKYNGSYIPPG-WREWGALIMNS-KYYNYSINMNGRK-IKHGEDYYNDYYPDLIANDSV 82 (271)
Q Consensus 6 ~~~~~~Lk~~GY~T~~~Gk~h~~~~~~~~p~G-fd~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~ 82 (271)
|-|-+.|+++||++...= +| .| ||.|-..+... .--.......|.. .-++|+...-|.|-.+.+
T Consensus 265 CyLF~nLa~lGf~~~l~l-nH---------dG~Fd~fl~~ir~~G~~~~pl~~~~g~~~~~~aFDGSpIy~D~~vL~--- 331 (518)
T TIGR03368 265 CHLFSNLAKLGFTENLLL-NH---------DGHFDNFLQLVRENGGMQSPLMSQTGLPVAQRSFDGSPIYDDYAVLN--- 331 (518)
T ss_pred chHHHHHHHcCCchhhcc-cC---------CCccchHHHHHHHcCCCCCCCcCccCCcHHHhccCCCcccchHHHHH---
Confidence 446899999999987651 12 23 66654433211 1111111112211 123455444555544444
Q ss_pred HHHHhhhcCCCCCCeEEEecCCCCCCCCCCChHHHhhcCCCCCCCCCCCCCCCCCChhHHHhhhhccCcccHHHHHHHHH
Q psy5200 83 RFLRQSKQSFSKKPIMLVMSFPAPHGPEDSAPQYANMFFNVTSHHTPAYDYAPNPDKQWILQVTRKMQPVHRQFTDLLMT 162 (271)
Q Consensus 83 ~~l~~~~~~~~~~Pffl~~~~~~pH~p~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (271)
+|++++.+ .+++|--++.++..-|..-..+..-. .-..
T Consensus 332 rW~~~r~~-~~~~~vA~~YNtIsLHDGNr~~g~~~-----------------------------------------~s~~ 369 (518)
T TIGR03368 332 RWLQERLG-EPDGPVALYYNTISLHDGNRIPNSGM-----------------------------------------TSLA 369 (518)
T ss_pred HHHHHhhc-CCCCceEEEEeeeecccCCcCCCCCc-----------------------------------------cchh
Confidence 57777643 45678999999999998754332000 0011
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCEEEEEEcCCCccc-cccccCCC-CCCCCCCCceeeEEEEcCC--CC-CCeee
Q psy5200 163 KRLQTLQSVDDAVEKIVKELKDLGELNNTYIIYTSDHGYHL-GQFGLVKG-KSFPFEFDIRVPFLMRGPG--IV-PGTMY 237 (271)
Q Consensus 163 ~y~~~v~~~D~~iG~ll~~L~~~g~~~nTivv~tsDHG~~~-g~h~~~~~-k~~~~e~~~~VPlii~~P~--~~-~g~~~ 237 (271)
.|-.-...+=+.+.++++.|+++| .+.+||+.-.||..+ |+.....+ .......-+|||.=|+.=| .+ +|...
T Consensus 370 sY~~Ra~kLlddld~F~~~le~Sg--R~vvVv~VPEHGAAlrGDk~QisGLREIPsP~IthvPVGik~iG~~~~~~g~~~ 447 (518)
T TIGR03368 370 SYPLRAKKLLDDLDRFFDELEKSG--RKVVVVLVPEHGAALRGDKMQISGLREIPSPSITHVPVGVKFFGLGAPRRGATV 447 (518)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHcC--CcEEEEEecCcchhcccchhhhccccCCCCCcccccceEEEEeccCCCCCCCCe
Confidence 222223444456788999999998 789999999999875 55422211 1223445688888555544 23 35555
Q ss_pred eee
Q psy5200 238 LLD 240 (271)
Q Consensus 238 ~~D 240 (271)
++|
T Consensus 448 ~I~ 450 (518)
T TIGR03368 448 TIT 450 (518)
T ss_pred EEC
Confidence 566
No 38
>TIGR02335 hydr_PhnA phosphonoacetate hydrolase. This family consists of examples of phosphonoacetate hydrolase, an enzyme specific for the cleavage of the C-P bond in phosphonoacetate. Phosphonates are organic compounds with a direct C-P bond that is far less labile that the C-O-P bonds of phosphate attachment sites. Phosphonates may be degraded for phosphorus and energy by broad spectrum C-P lyase encoded by large operon or by specific enzymes for some of the more common phosphonates in nature. This family represents an enzyme from the latter category. It may be found encoded near genes for phosphonate transport and for pther specific phosphonatases.
Probab=97.56 E-value=0.0012 Score=59.59 Aligned_cols=30 Identities=17% Similarity=0.331 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCEEEEEEcCCCcc
Q psy5200 165 LQTLQSVDDAVEKIVKELKDLGELNNTYIIYTSDHGYH 202 (271)
Q Consensus 165 ~~~v~~~D~~iG~ll~~L~~~g~~~nTivv~tsDHG~~ 202 (271)
.+++..+|..||+|++. +|.||+|||||..
T Consensus 212 ~~~~~~lD~~l~~L~~~--------~~~vvvtaDHG~~ 241 (408)
T TIGR02335 212 NAFYAAMDSRFKRYHEQ--------GAIVAITADHGMN 241 (408)
T ss_pred HHHHHHHHHHHHHHHHC--------CCEEEEECCCCCc
Confidence 45678999999999872 6899999999975
No 39
>TIGR00306 apgM 2,3-bisphosphoglycerate-independent phosphoglycerate mutase, archaeal form. This model describes a set of proteins in the Archaea (two each in Methanococcus jannaschii, Methanobacterium thermoautotrophicum, and Archaeoglobus fulgidus) and in Aquifex aeolicus (1 member).
Probab=97.55 E-value=0.00026 Score=63.44 Aligned_cols=64 Identities=20% Similarity=0.372 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCEEEEEEcCCCccccccccCCCCCCCCCCCceeeEEEEcCCCCCCeee
Q psy5200 161 MTKRLQTLQSVDDAVEKIVKELKDLGELNNTYIIYTSDHGYHLGQFGLVKGKSFPFEFDIRVPFLMRGPGIVPGTMY 237 (271)
Q Consensus 161 ~~~y~~~v~~~D~~iG~ll~~L~~~g~~~nTivv~tsDHG~~~g~h~~~~~k~~~~e~~~~VPlii~~P~~~~g~~~ 237 (271)
...+..+|+.+|+.+++++++|+ .++.+||+|||||.... . ..++. --||+||++|++....+.
T Consensus 307 ~~~k~~aIE~iD~~l~~~l~~l~----~~~~~liiTaDHgtp~~---~--~~Ht~----~pVP~ii~g~~~~~d~~~ 370 (396)
T TIGR00306 307 PELKVRAIEKIDSKIVGPLLALD----LDETRLILTADHSTPVE---V--KDHSA----DPVPIVIVGPGVRVDEVK 370 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh----hCCCEEEEeCCCCCCCC---C--CCCCC----CCeeEEEEeCCccCCCCC
Confidence 45567899999999999999986 34568999999997521 1 11111 139999999998654443
No 40
>smart00098 alkPPc Alkaline phosphatase homologues.
Probab=97.37 E-value=0.00092 Score=60.18 Aligned_cols=35 Identities=26% Similarity=0.339 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCEEEEEEcCCCcc
Q psy5200 165 LQTLQSVDDAVEKIVKELKDLGELNNTYIIYTSDHGYH 202 (271)
Q Consensus 165 ~~~v~~~D~~iG~ll~~L~~~g~~~nTivv~tsDHG~~ 202 (271)
...+..+|+.|+..++..++ .+|||||+|+||+..
T Consensus 276 i~E~~~fd~AV~~a~~~~~~---~~dTLiiVTADH~~g 310 (419)
T smart00098 276 LHETVDFDQAIQAALEFAKK---EDETLVIVTADHSHV 310 (419)
T ss_pred HHHHHHHHHHHHHHHHHhhC---CCCcEEEEEecCCCc
Confidence 45577899999999999997 589999999999764
No 41
>TIGR02535 hyp_Hser_kinase proposed homoserine kinase. The proposal that this family encodes a kinase is based on analogy to phosphomutases which are intramolecular phosphotransferases. A mutase active site could evolve to bring together homoserine and a phosphate donor such as phosphoenolpyruvate resulting in a kinase activity.
Probab=97.08 E-value=0.0074 Score=54.20 Aligned_cols=60 Identities=25% Similarity=0.383 Sum_probs=42.1
Q ss_pred HHHHHHHHHH-HHHHHHHHHHcCCCCCEEEEEEcCCCccccccccCCCCCCCCCCCceeeEEEEcCCCCCCe
Q psy5200 165 LQTLQSVDDA-VEKIVKELKDLGELNNTYIIYTSDHGYHLGQFGLVKGKSFPFEFDIRVPFLMRGPGIVPGT 235 (271)
Q Consensus 165 ~~~v~~~D~~-iG~ll~~L~~~g~~~nTivv~tsDHG~~~g~h~~~~~k~~~~e~~~~VPlii~~P~~~~g~ 235 (271)
..+|+.+|+. ++.++++|++.| ++++||+|||||... ....++ .--||+||+++++....
T Consensus 308 v~aIE~lD~~~~~~ll~al~~~~--~~~~~~vt~DH~tp~-----~~~~Ht----~~pVP~ii~g~~~~~d~ 368 (396)
T TIGR02535 308 IKAIELIDSRIVGPLLEALSDRD--EPFRILVLPDHPTPL-----ELKTHT----AEPVPFLLYGKGIESDS 368 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC--CCeEEEEeeeCccCC-----CCCccC----CCCEeEEEEeCCcCCCC
Confidence 4568999997 668999997554 455899999999632 111222 12599999999975433
No 42
>PF00245 Alk_phosphatase: Alkaline phosphatase; InterPro: IPR001952 This entry represents alkaline phosphatases (3.1.3.1 from EC) (ALP), which act as non-specific phosphomonoesterases to hydrolyse phosphate esters, optimally at high pH. The reaction mechanism involves the attack of a serine alkoxide on a phosphorus of the substrate to form a transient covalent enzyme-phosphate complex, followed by the hydrolysis of the serine phosphate. Alkaline phosphatases are found in all kingdoms of life, with the exception of some plants. Alkaline phosphatases are metalloenzymes that exist as a dimer, each monomer binding metal ions. The metal ions they carry can differ, although zinc and magnesium are the most common. For example, Escherichia coli alkaline phosphatase (encoded by phoA) requires the presence of two zinc ions bound at the M1 and M2 metal sites, and one magnesium ion bound at the M3 site []. However, alkaline phosphatases from Thermotoga maritima and Bacillus subtilis require cobalt for maximal activity []. In mammals, there are four alkaline phosphatase isozymes: placental, placental-like (germ cell), intestinal and tissue-nonspecific (liver/bone/kidney). All four isozymes are anchored to the outer surface of the plasma membrane by a covalently attached glycosylphosphatidylinositol (GPI) anchor []. Human alkaline phosphatases have four metal binding sites: two for zinc, one for magnesium, and one for calcium ion. Placental alkaline phosphatase (ALPP or PLAP) is highly polymorphic, with at least three common alleles []. Its activity is down-regulated by a number of effectors such as l-phenylalanine, 5'-AMP, and by p-nitrophenyl-phosphonate (PNPPate) []. The placental-like isozyme (ALPPL or PLAP-like) is elevated in germ cell tumours. The intestinal isozyme (ALPI or IAP) has the ability to detoxify lipopolysaccharide and prevent bacterial invasion across the gut mucosal barrier []. The tissue-nonspecific isozyme (ALPL) is, and may play a role in skeletal mineralisation. Defects in ALPL are a cause of hypophosphatasia, including infantile-type (OMIM:241500), childhood-type (OMIM:241510) and adult-type (OMIM:146300). Hhypophosphatasia is an inherited metabolic bone disease characterised by defective skeletal mineralisation []. This entry also contains the related enzyme streptomycin-6-phosphate phosphatase (3.1.3.39 from EC) (encoded by strK) from Streptomyces species. This enzyme is involved in the synthesis of the antibiotic streptomycin, specifically cleaving both streptomycin-6-phosphate and, more slowly, streptomycin-3-phosphate [].; GO: 0016791 phosphatase activity, 0008152 metabolic process; PDB: 1AJD_B 1ALH_B 2ANH_B 3BDF_A 1ELZ_B 1ELX_B 1B8J_B 2GA3_A 1ANJ_B 1Y6V_B ....
Probab=97.07 E-value=0.0022 Score=57.99 Aligned_cols=35 Identities=29% Similarity=0.331 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCEEEEEEcCCCcc
Q psy5200 165 LQTLQSVDDAVEKIVKELKDLGELNNTYIIYTSDHGYH 202 (271)
Q Consensus 165 ~~~v~~~D~~iG~ll~~L~~~g~~~nTivv~tsDHG~~ 202 (271)
...+..+|+.|+.+++..++. +|||||+|+||+..
T Consensus 279 i~E~~~fD~AV~~a~~~~~~~---~~TLiIVTADHetg 313 (421)
T PF00245_consen 279 IEETLEFDDAVKVALDFAEKD---DDTLIIVTADHETG 313 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC---SSEEEEEEESSEES
T ss_pred HHHHHHHHHHHHHHHHHhccC---CCeEEEEEecccCc
Confidence 456788999999999999844 99999999999865
No 43
>COG3635 Predicted phosphoglycerate mutase, AP superfamily [Carbohydrate transport and metabolism]
Probab=97.03 E-value=0.0054 Score=53.53 Aligned_cols=70 Identities=21% Similarity=0.393 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCEEEEEEcCCCccc--cccccCCCCCCCCCCCceeeEEEEcCCCCCCe-------
Q psy5200 165 LQTLQSVDDAVEKIVKELKDLGELNNTYIIYTSDHGYHL--GQFGLVKGKSFPFEFDIRVPFLMRGPGIVPGT------- 235 (271)
Q Consensus 165 ~~~v~~~D~~iG~ll~~L~~~g~~~nTivv~tsDHG~~~--g~h~~~~~k~~~~e~~~~VPlii~~P~~~~g~------- 235 (271)
...|..+|..+|.+++ ++ .++++|++|+||-... .+|.. =-||++|+.+.+..+.
T Consensus 320 v~~IE~iD~~i~pll~-~~----~~~~~i~vt~DHsTPv~vk~Hs~-----------dPVPili~~~~v~~D~v~~F~E~ 383 (408)
T COG3635 320 VRVIEDIDKAIGPLLD-LD----LDEDVIAVTGDHSTPVSVKDHSG-----------DPVPILIYGPYVRRDDVKRFDEF 383 (408)
T ss_pred HHHHHHHHHHhhhhhc-cc----cCCcEEEEeCCCCCcccccccCC-----------CCccEEEecCCcccCccceecHh
Confidence 3568999999999998 44 5889999999998753 23321 1499999999853332
Q ss_pred ---------eeeeecchhHHHHhcC
Q psy5200 236 ---------MYLLDVLIPQVRKFSS 251 (271)
Q Consensus 236 ---------~~~~Di~~PTll~lag 251 (271)
+.-.||+ +-++++++
T Consensus 384 ~~~~G~Lgri~g~dlm-~ill~~~~ 407 (408)
T COG3635 384 SCARGSLGRIRGSDLM-PILLDLAG 407 (408)
T ss_pred hhhcCCcceeehHHHH-HHHHHhhc
Confidence 2356777 88888775
No 44
>KOG2645|consensus
Probab=96.96 E-value=0.0011 Score=59.43 Aligned_cols=39 Identities=33% Similarity=0.483 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCEEEEEEcCCCccc
Q psy5200 165 LQTLQSVDDAVEKIVKELKDLGELNNTYIIYTSDHGYHL 203 (271)
Q Consensus 165 ~~~v~~~D~~iG~ll~~L~~~g~~~nTivv~tsDHG~~~ 203 (271)
-.+++.+|..||.+++.|++.++.+++=||++||||...
T Consensus 200 ~~~l~~vD~~i~~L~~~Lk~r~L~~~vNvIi~SDHGM~~ 238 (418)
T KOG2645|consen 200 EKALKEVDDFIGYLIKGLKDRNLFEDVNVIIVSDHGMTD 238 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHccccccceEEEeecCCccc
Confidence 356899999999999999999999999999999999863
No 45
>PRK04200 cofactor-independent phosphoglycerate mutase; Provisional
Probab=96.82 E-value=0.014 Score=52.41 Aligned_cols=60 Identities=27% Similarity=0.465 Sum_probs=42.0
Q ss_pred HHHHHHHHHH-HHHHHHHHHHcCCCCCEEEEEEcCCCccccccccCCCCCCCCCCCceeeEEEEcCCCCCCee
Q psy5200 165 LQTLQSVDDA-VEKIVKELKDLGELNNTYIIYTSDHGYHLGQFGLVKGKSFPFEFDIRVPFLMRGPGIVPGTM 236 (271)
Q Consensus 165 ~~~v~~~D~~-iG~ll~~L~~~g~~~nTivv~tsDHG~~~g~h~~~~~k~~~~e~~~~VPlii~~P~~~~g~~ 236 (271)
..+|+.+|++ ++.++++|++. ++.++|+|||||... ....++. --||+||+++++....+
T Consensus 307 v~aiE~lD~~~~~~ll~al~~~---~~~~l~it~DH~tp~-----~~~~Ht~----~pVP~ii~g~~~~~d~~ 367 (395)
T PRK04200 307 IKAIEDIDERVVGPILEALKKY---EDYRILVLPDHPTPI-----ELKTHTA----DPVPFLIYGEGIEPDGV 367 (395)
T ss_pred HHHHHHHHHHhHHHHHHHHHhc---CCCEEEEeccCCcCC-----CCCccCC----CCEeEEEEcCCcCCCCC
Confidence 4568999998 66899999752 466899999999632 1112221 25999999999764443
No 46
>TIGR03396 PC_PLC phospholipase C, phosphocholine-specific, Pseudomonas-type. Members of this protein family are bacterial, phosphatidylcholine-hydrolyzing phospholipase C enzymes, with a characteristic domain architecture as found in hemolytyic (PlcH) and nonhemolytic (PlcN) secreted enzymes of Pseudomonas aeruginosa. PlcH hydrolyzes phosphatidylcholine to diacylglycerol and phosphocholine, but unlike PlcN can also hydrolyze sphingomyelin to ceramide ((N-acylsphingosine)) and phosphocholine. Members of this family share the twin-arginine signal sequence for Sec-independent transport across the plasma membrane. PlcH is secreted as a heterodimer with a small chaperone, PlcR, encoded immediately downstream.
Probab=96.79 E-value=0.0049 Score=58.78 Aligned_cols=91 Identities=18% Similarity=0.072 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHHHHHHHcC-CCCCEEEEEEcCCCccccccccC------------CCC-------------------C
Q psy5200 166 QTLQSVDDAVEKIVKELKDLG-ELNNTYIIYTSDHGYHLGQFGLV------------KGK-------------------S 213 (271)
Q Consensus 166 ~~v~~~D~~iG~ll~~L~~~g-~~~nTivv~tsDHG~~~g~h~~~------------~~k-------------------~ 213 (271)
..+.+=+..|.+++++|.+.. +|++|+||++=|-..-+-+|-.. .++ .
T Consensus 304 ~~~~~G~~~i~~vl~aL~~nP~vW~~TvliItyDE~gGffDHV~PP~~p~~~~~~~~~g~~t~~~~~e~~~~~~~~~~~~ 383 (690)
T TIGR03396 304 SSPAYGAWYVSRVLDALTANPEVWSKTVLLLNYDENDGFFDHVPPPVPPSYNADGTSAGKSTLDTAGEYFDVPDPAEARG 383 (690)
T ss_pred CChHHHHHHHHHHHHHHHhChhhhhceEEEEEEeCCCCcccCcCCCCCCCcccccccccccccCCCcccccccccccccc
Confidence 346677889999999999998 69999999998876655555100 000 0
Q ss_pred CCCCCCceeeEEEEcCCCCCCeee-----eeecchhHHHHhcCCCccch
Q psy5200 214 FPFEFDIRVPFLMRGPGIVPGTMY-----LLDVLIPQVRKFSSGSLIFI 257 (271)
Q Consensus 214 ~~~e~~~~VPlii~~P~~~~g~~~-----~~Di~~PTll~lag~~~~~l 257 (271)
..+--+.||||||..|-++.|.|+ +.-|+ -+|-+..|+..+.+
T Consensus 384 ~p~GlG~RVP~iVISPwsrgG~V~s~~~DHtSvL-rflE~~fgl~~~ni 431 (690)
T TIGR03396 384 RPIGLGPRVPMYVISPWSKGGWVNSQVFDHTSVL-RFLEKRFGVREPNI 431 (690)
T ss_pred CcCCccceeeEEEECCCCCCCcccCccccHHHHH-HHHHHHhCCCCccc
Confidence 123348999999999998888875 55665 88888889887643
No 47
>PF07394 DUF1501: Protein of unknown function (DUF1501); InterPro: IPR010869 This family contains a number of hypothetical bacterial proteins of unknown function approximately 400 residues long.
Probab=96.69 E-value=0.0082 Score=54.03 Aligned_cols=88 Identities=19% Similarity=0.265 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCEEEEEEcCCCccccccccCCCCCCCCCCCceeeEEEEcCCCCCCeee-----
Q psy5200 163 KRLQTLQSVDDAVEKIVKELKDLGELNNTYIIYTSDHGYHLGQFGLVKGKSFPFEFDIRVPFLMRGPGIVPGTMY----- 237 (271)
Q Consensus 163 ~y~~~v~~~D~~iG~ll~~L~~~g~~~nTivv~tsDHG~~~g~h~~~~~k~~~~e~~~~VPlii~~P~~~~g~~~----- 237 (271)
.+...+..+|+.|..|++.|++.|++|+|+||.+||=|-..-+++-.+.-+ .+.--+++|.+.+++.|++.
T Consensus 265 ~~~~ll~~L~~alaaf~~dL~~~g~~d~t~vv~~SEFGRt~~~N~~~GtDH----~g~g~~~~v~GGgv~gG~v~G~~p~ 340 (392)
T PF07394_consen 265 RHARLLPELDQALAAFIQDLKERGLLDDTLVVTMSEFGRTPRENGSGGTDH----WGWGGSMLVAGGGVKGGRVYGETPS 340 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCcCceEEEEeeecCCCcccCCCCCCCC----CCCcceEEEeCCCcCCCcEeCCCCC
Confidence 456677999999999999999999999999999999997765443321111 02235788888888777653
Q ss_pred -----------eeecchhHHHHhcCCCcc
Q psy5200 238 -----------LLDVLIPQVRKFSSGSLI 255 (271)
Q Consensus 238 -----------~~Di~~PTll~lag~~~~ 255 (271)
.-|+. .|++...|++.-
T Consensus 341 l~~~~~~~~~~~~dl~-~t~~~~~~~d~~ 368 (392)
T PF07394_consen 341 LGEDPLDNPVSPRDLY-ATRLLPLGIDPR 368 (392)
T ss_pred cccccccCCcChhhcc-CCeeeccccChH
Confidence 23766 888887777765
No 48
>COG1785 PhoA Alkaline phosphatase [Inorganic ion transport and metabolism]
Probab=96.40 E-value=0.019 Score=52.19 Aligned_cols=34 Identities=26% Similarity=0.325 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCEEEEEEcCCCc
Q psy5200 165 LQTLQSVDDAVEKIVKELKDLGELNNTYIIYTSDHGY 201 (271)
Q Consensus 165 ~~~v~~~D~~iG~ll~~L~~~g~~~nTivv~tsDHG~ 201 (271)
...+..+|+.|...|+..++. .|||||+|+||-.
T Consensus 322 i~e~~~fd~Avq~al~fA~k~---~~TLVIvTADH~t 355 (482)
T COG1785 322 IGETVAFDEAVQAALDFAEKD---GNTLVIVTADHET 355 (482)
T ss_pred HHHHHHHHHHHHHHHHHHhcC---CCeEEEEeccccC
Confidence 455778999999999999977 8999999999954
No 49
>PRK04135 cofactor-independent phosphoglycerate mutase; Provisional
Probab=96.40 E-value=0.007 Score=53.93 Aligned_cols=53 Identities=23% Similarity=0.351 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCEEEEEEcCCCccccccccCCCCCCCCCCCceeeEEEEcCCCCC
Q psy5200 165 LQTLQSVDDAVEKIVKELKDLGELNNTYIIYTSDHGYHLGQFGLVKGKSFPFEFDIRVPFLMRGPGIVP 233 (271)
Q Consensus 165 ~~~v~~~D~~iG~ll~~L~~~g~~~nTivv~tsDHG~~~g~h~~~~~k~~~~e~~~~VPlii~~P~~~~ 233 (271)
..+|+.+|..|..|+ .| ++++||+||||+... ....++ . --||++|+++++..
T Consensus 303 v~~IE~iD~~l~~ll-~l------~~~~ivVT~DH~TP~-----~~~~Hs-~---dPVP~li~g~~~~~ 355 (395)
T PRK04135 303 VKVIEEVDALLPEIL-AL------KPDVLVITGDHSTPA-----VLKGHS-W---HPVPLLLYSKYCRP 355 (395)
T ss_pred HHHHHHHHHHHHHHh-cC------CCcEEEEeCCCCCcc-----cccccC-C---CCEeEEEEcCCCCC
Confidence 568999999999887 55 345899999999764 111111 1 14999999998654
No 50
>COG1524 Uncharacterized proteins of the AP superfamily [General function prediction only]
Probab=96.37 E-value=0.0046 Score=56.69 Aligned_cols=40 Identities=28% Similarity=0.449 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCEEEEEEcCCCcc
Q psy5200 163 KRLQTLQSVDDAVEKIVKELKDLGELNNTYIIYTSDHGYH 202 (271)
Q Consensus 163 ~y~~~v~~~D~~iG~ll~~L~~~g~~~nTivv~tsDHG~~ 202 (271)
.+...++.+|..++++++.+++.|+.++++||++||||..
T Consensus 241 ~~~~~~~~~d~~l~~ll~~l~~~~~~~~~~~ii~sDHG~~ 280 (450)
T COG1524 241 EYAEAVREVDSLLGELLELLKKRGLYEEYLVIITSDHGMS 280 (450)
T ss_pred HHHhhhhhhhhhHHHHHHHHHhhccccceEEEEecccccc
Confidence 5678899999999999999999999999999999999987
No 51
>KOG4126|consensus
Probab=94.48 E-value=0.26 Score=44.93 Aligned_cols=35 Identities=23% Similarity=0.368 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCEEEEEEcCCCccc
Q psy5200 165 LQTLQSVDDAVEKIVKELKDLGELNNTYIIYTSDHGYHL 203 (271)
Q Consensus 165 ~~~v~~~D~~iG~ll~~L~~~g~~~nTivv~tsDHG~~~ 203 (271)
+..+...|+.|...++..+ .++|+||+||||...+
T Consensus 367 L~Et~ef~~Aiq~a~~~t~----~~dTLivvTaDHsh~~ 401 (529)
T KOG4126|consen 367 LDETLEFDKAIQRALELTS----EEDTLIVVTADHSHTF 401 (529)
T ss_pred HHHHHHHHHHHHHHHHhcC----ccCCEEEEecccccce
Confidence 3456677777777776665 6899999999998764
No 52
>PF08665 PglZ: PglZ domain; InterPro: IPR013973 This entry is a member of the Alkaline phosphatase clan.
Probab=88.77 E-value=0.68 Score=36.87 Aligned_cols=25 Identities=36% Similarity=0.772 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHcCCCCCEEEEEEcCCCcc
Q psy5200 174 AVEKIVKELKDLGELNNTYIIYTSDHGYH 202 (271)
Q Consensus 174 ~iG~ll~~L~~~g~~~nTivv~tsDHG~~ 202 (271)
.|.++|..|.+.| .-||+|||||.-
T Consensus 151 ~L~~li~~l~~~~----~~V~ITsDHG~v 175 (181)
T PF08665_consen 151 ELRSLIKELRNAG----RRVVITSDHGFV 175 (181)
T ss_pred HHHHHHHHHHhcC----ceEEEECCCCCE
Confidence 6667777777773 358999999974
No 53
>COG3379 Uncharacterized conserved protein [Function unknown]
Probab=87.39 E-value=0.65 Score=41.33 Aligned_cols=30 Identities=27% Similarity=0.501 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCEEEEEEcCCCcc
Q psy5200 169 QSVDDAVEKIVKELKDLGELNNTYIIYTSDHGYH 202 (271)
Q Consensus 169 ~~~D~~iG~ll~~L~~~g~~~nTivv~tsDHG~~ 202 (271)
+.+|+.||.+++.+. .++|.+++.||||..
T Consensus 236 ~LvD~~IG~~~~~i~----~~e~~l~vvSDHGf~ 265 (471)
T COG3379 236 SLVDKYIGLKLEIIG----FEETYLTVVSDHGFK 265 (471)
T ss_pred HHHHHHHHHHHHhcc----ccceEEEEEeccccc
Confidence 678999999999987 788999999999974
No 54
>cd07366 3MGA_Dioxygenase Subunit B of the Class III Extradiol ring-cleavage dioxygenase, 3-O-Methylgallate Dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 3-O-Methylgallate. 3-O-Methylgallate Dioxygenase catalyzes the oxidization and subsequent ring-opening of 3-O-Methylgallate (3MGA) between carbons 2 and 3. 3-O-Methylgallate Dioxygenase is a key enzyme in the syringate degradation pathway, in which the syringate is first converted to 3-O-Methylgallate by O-demethylase. This enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which uses a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents the catalytic subunit, B.
Probab=82.28 E-value=5.1 Score=35.16 Aligned_cols=31 Identities=10% Similarity=0.187 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHcCCCCCEEEEEEcCCCccccc
Q psy5200 173 DAVEKIVKELKDLGELNNTYIIYTSDHGYHLGQ 205 (271)
Q Consensus 173 ~~iG~ll~~L~~~g~~~nTivv~tsDHG~~~g~ 205 (271)
+.+.++-+.+++. .=+|+|||+.||...+..
T Consensus 73 ~a~~~~~~~i~~~--~PDvlVIispDH~~~f~~ 103 (328)
T cd07366 73 AALDRLADFIRAA--RIDVAVIVGDDQKELFDE 103 (328)
T ss_pred HHHHHHHHHHHHh--CCCEEEEEcCccHhhhcc
Confidence 4455566666655 378999999999977654
No 55
>TIGR02687 conserved hypothetical protein TIGR02687. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 880 amino acids in length. This protein is repeatedly found upstream of another uncharacterized protein of about 470 amino acids in length, modeled by TIGR02688.
Probab=76.34 E-value=4.6 Score=40.16 Aligned_cols=34 Identities=29% Similarity=0.485 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCEEEEEEcCCCccc
Q psy5200 164 RLQTLQSVDDAVEKIVKELKDLGELNNTYIIYTSDHGYHL 203 (271)
Q Consensus 164 y~~~v~~~D~~iG~ll~~L~~~g~~~nTivv~tsDHG~~~ 203 (271)
...++..++..|++|++.|. -+.||+|+|||.-.
T Consensus 597 ~~~~l~el~~~v~~l~~~l~------~~~i~iTADHGfi~ 630 (844)
T TIGR02687 597 VEETIVELKKLVKYLINRLN------GTNIIVTADHGFLY 630 (844)
T ss_pred HHHHHHHHHHHHHHHHHhcC------CcEEEEECCCcccc
Confidence 34556666777777666553 34899999999864
No 56
>COG4102 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=74.16 E-value=26 Score=30.84 Aligned_cols=36 Identities=14% Similarity=0.187 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHcC-CCCCEEEEEEcCCCccc
Q psy5200 168 LQSVDDAVEKIVKELKDLG-ELNNTYIIYTSDHGYHL 203 (271)
Q Consensus 168 v~~~D~~iG~ll~~L~~~g-~~~nTivv~tsDHG~~~ 203 (271)
.+.++..++.+=..+.+.| .|++|+||..||-|...
T Consensus 292 a~ql~~~da~l~a~~t~lG~~w~dt~i~t~tEFgRta 328 (418)
T COG4102 292 ATQLGGLDAALDAFETELGARWKDTVIVTATEFGRTA 328 (418)
T ss_pred HHHhcchHHHHHHHHhhccccccceEEEEeeccccce
Confidence 3556666666666777788 89999999999888654
No 57
>PF05991 NYN_YacP: YacP-like NYN domain; InterPro: IPR010298 This family consists of several hypothetical bacterial proteins as well as some uncharacterised sequences from Arabidopsis thaliana. The function of this family is unknown.
Probab=67.48 E-value=5.3 Score=31.34 Aligned_cols=31 Identities=32% Similarity=0.520 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCEEEEEEcCCCcc
Q psy5200 169 QSVDDAVEKIVKELKDLGELNNTYIIYTSDHGYH 202 (271)
Q Consensus 169 ~~~D~~iG~ll~~L~~~g~~~nTivv~tsDHG~~ 202 (271)
.-.|..|.+++..+.+.+ ..+.|+||||...
T Consensus 77 ~tAD~~Ie~~v~~~~~~~---~~v~VVTSD~~iq 107 (166)
T PF05991_consen 77 ETADDYIERLVRELKNRP---RQVTVVTSDREIQ 107 (166)
T ss_pred CCHHHHHHHHHHHhccCC---CeEEEEeCCHHHH
Confidence 367999999999988654 6799999999764
No 58
>cd07364 PCA_45_Dioxygenase_B Subunit B of the Class III extradiol dioxygenase, Protocatechuate 4,5-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of protocatechuate. Protocatechuate 4,5-dioxygenase (LigAB) catalyzes the oxidization and subsequent ring-opening of protocatechuate (or 3,4-dihydroxybenzoic acid, PCA), an intermediate in the breakdown of lignin and other compounds. Protocatechuate 4,5-dioxygenase is an aromatic ring opening dioxygenase belonging to the class III extradiol enzyme family, a group of enyzmes that cleaves aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon using a non-heme Fe(II). LigAB is composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. The B subunit (LigB) is the catalytic subunit of LigAB.
Probab=62.22 E-value=15 Score=31.50 Aligned_cols=35 Identities=14% Similarity=0.088 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCEEEEEEcCCCccccc
Q psy5200 169 QSVDDAVEKIVKELKDLGELNNTYIIYTSDHGYHLGQ 205 (271)
Q Consensus 169 ~~~D~~iG~ll~~L~~~g~~~nTivv~tsDHG~~~g~ 205 (271)
..+.+.+.++-+.+++. .-+|+|||.+||...+..
T Consensus 31 ~~~~~a~~~~~~~~~~~--~pD~vVvi~~dH~~~f~~ 65 (277)
T cd07364 31 KPLFKGYQPARDWIKKN--KPDVAIIVYNDHASAFDL 65 (277)
T ss_pred HHHHHHHHHHHHHHHHh--CCCEEEEEcCchHHhhcc
Confidence 34555556666677655 378999999999987654
No 59
>PRK13363 protocatechuate 4,5-dioxygenase subunit beta; Provisional
Probab=59.74 E-value=56 Score=28.84 Aligned_cols=30 Identities=13% Similarity=0.163 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHcCCCCCEEEEEEcCCCcccc
Q psy5200 173 DAVEKIVKELKDLGELNNTYIIYTSDHGYHLG 204 (271)
Q Consensus 173 ~~iG~ll~~L~~~g~~~nTivv~tsDHG~~~g 204 (271)
+.+.++-+.+++. .=+|+|||+.||...+.
T Consensus 75 ~a~~~~~~~i~~~--~PDvlViispdh~~~F~ 104 (335)
T PRK13363 75 AAIERMRDAIEAA--RIDVAVIVGNDQMELFT 104 (335)
T ss_pred HHHHHHHHHHHHh--CCCEEEEEcCCchhhcc
Confidence 4555666666655 36899999999976543
No 60
>PRK13366 protocatechuate 4,5-dioxygenase subunit beta; Provisional
Probab=59.38 E-value=16 Score=31.36 Aligned_cols=35 Identities=17% Similarity=0.066 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCEEEEEEcCCCccccc
Q psy5200 169 QSVDDAVEKIVKELKDLGELNNTYIIYTSDHGYHLGQ 205 (271)
Q Consensus 169 ~~~D~~iG~ll~~L~~~g~~~nTivv~tsDHG~~~g~ 205 (271)
..+.+.+.++-+.+++.+ -+|+|||.+||+..+..
T Consensus 31 ~~~~~a~~~i~~~i~~~~--PDvvVii~~dH~~~f~~ 65 (284)
T PRK13366 31 QPVFKGYEFSKQWEKEEK--PDVIFLVYNDHATAFSL 65 (284)
T ss_pred HHHHHHHHHHHHHHHHhC--CCEEEEEcCCcHHhhcc
Confidence 455666667777777663 78999999999876533
No 61
>PRK13364 protocatechuate 4,5-dioxygenase subunit beta; Provisional
Probab=53.65 E-value=20 Score=30.76 Aligned_cols=33 Identities=15% Similarity=0.355 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCEEEEEEcCCCccc
Q psy5200 169 QSVDDAVEKIVKELKDLGELNNTYIIYTSDHGYHL 203 (271)
Q Consensus 169 ~~~D~~iG~ll~~L~~~g~~~nTivv~tsDHG~~~ 203 (271)
..+.+.+.++-+.+++. .-+|+|||++||+..+
T Consensus 31 ~~v~~a~~~~~~~v~~~--~PDvvVvis~dH~~~f 63 (278)
T PRK13364 31 KPFFDGFPPVREWLEKV--KPDVAVVFYNDHGLNF 63 (278)
T ss_pred HHHHHHHHHHHHHHHHh--CCCEEEEECCchHhhh
Confidence 35556666677777765 3789999999999874
No 62
>cd07950 Gallate_Doxase_N The N-terminal domain of the Class III extradiol dioxygenase, Gallate Dioxygenase, which catalyzes the oxidization and subsequent ring-opening of gallate. Gallate Dioxygenase catalyzes the oxidization and subsequent ring-opening of gallate, an intermediate in the degradation of the aromatic compound, syringate. The reaction product of gallate dioxygenase is 4-oxalomesaconate. The amino acid sequence of the N-terminal and C-terminal regions of gallate dioxygenase exhibits homology with the sequence of PCA 4,5-dioxygenase B (catalytic) and A subunits, respectively. The enzyme is estimated to be a homodimer according to the Escherichia coli enzyme. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. In this subfamily, the subunits A and B are fused to make a single polypeptide chain. The dimer interface for this subfamily may resemble the tetramer interface of classical LigAB en
Probab=51.98 E-value=22 Score=30.49 Aligned_cols=33 Identities=15% Similarity=0.134 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHcCCCCCEEEEEEcCCCcccc
Q psy5200 170 SVDDAVEKIVKELKDLGELNNTYIIYTSDHGYHLG 204 (271)
Q Consensus 170 ~~D~~iG~ll~~L~~~g~~~nTivv~tsDHG~~~g 204 (271)
.+.+.+.++-+.+++.+ -+|+|||++||+..+.
T Consensus 32 ~~~~a~~~~~~~i~~~~--PD~iVvi~~dH~~~f~ 64 (277)
T cd07950 32 PIFDGYEPVKQWLAEQK--PDVLFMVYNDHVTSFF 64 (277)
T ss_pred HHHHHHHHHHHHHHHhC--CCEEEEEcCcHHHHhc
Confidence 44555556666666553 7899999999998763
No 63
>COG3379 Uncharacterized conserved protein [Function unknown]
Probab=48.59 E-value=23 Score=31.86 Aligned_cols=24 Identities=17% Similarity=0.156 Sum_probs=19.7
Q ss_pred CCCeeeeeecchhHHHHhcCCCccc
Q psy5200 232 VPGTMYLLDVLIPQVRKFSSGSLIF 256 (271)
Q Consensus 232 ~~g~~~~~Di~~PTll~lag~~~~~ 256 (271)
++-.++..|+. ||||.+-|+.-++
T Consensus 435 k~~s~~IyDva-PTIL~L~gi~~~~ 458 (471)
T COG3379 435 KQSSVSIYDVA-PTILKLYGINCPS 458 (471)
T ss_pred cccceeeEeec-hHHHHHhCCCCCc
Confidence 34457799996 9999999998874
No 64
>cd07369 PydA_Rs_like PydA is a Class III Extradiol ring-cleavage dioxygenase required for the degradation of 3-hydroxy-4-pyridone (HP). This subfamily is composed of Rhizobium sp. PydA and similar proteins. PydA is required for the degradation of 3-hydroxy-4-pyridone (HP), an intermediate in the Leucaena toxin mimosine degradation pathway. It is a member of the class III extradiol dioxygenase family, a group of enzymes that use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents the catalytic subunit, B.
Probab=48.19 E-value=34 Score=30.12 Aligned_cols=32 Identities=19% Similarity=0.235 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCEEEEEEcCCCcc
Q psy5200 169 QSVDDAVEKIVKELKDLGELNNTYIIYTSDHGYH 202 (271)
Q Consensus 169 ~~~D~~iG~ll~~L~~~g~~~nTivv~tsDHG~~ 202 (271)
..+-+.+.++-+.+++. .=+|+|||.|||...
T Consensus 29 ~~~~~a~~~l~~~v~~~--~PD~iVV~~sdH~~~ 60 (329)
T cd07369 29 ARTEEATLKLGRTLTAA--RPDVIIAFLDDHFEN 60 (329)
T ss_pred HHHHHHHHHHHHHHHHh--CCCEEEEEcCCchhh
Confidence 44555555666666655 368999999999873
No 65
>cd07368 PhnC_Bs_like PhnC is a Class III Extradiol ring-cleavage dioxygenase involved in the polycyclic aromatic hydrocarbon (PAH) catabolic pathway. This subfamily is composed of Burkholderia sp. PhnC and similar poteins. PhnC is one of nine protein products encoded by the phn locus. These proteins are involved in the polycyclic aromatic hydrocarbon (PAH) catabolic pathway. PhnC is a member of the class III extradiol dioxygenase family, a group os enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents the catalytic subunit, B.
Probab=48.06 E-value=30 Score=29.61 Aligned_cols=31 Identities=19% Similarity=0.234 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHcCCCCCEEEEEEcCCCccccc
Q psy5200 173 DAVEKIVKELKDLGELNNTYIIYTSDHGYHLGQ 205 (271)
Q Consensus 173 ~~iG~ll~~L~~~g~~~nTivv~tsDHG~~~g~ 205 (271)
+.+.++-+.+++.+ -+|+|||+.||...+..
T Consensus 33 ~a~~~~~~~v~~~~--pD~ivvi~~dH~~~f~~ 63 (277)
T cd07368 33 HAYAICAERLAALQ--VTSVVVIGDDHYTLFGT 63 (277)
T ss_pred HHHHHHHHHHHHcC--CCEEEEEcCchHhhhhh
Confidence 55556666666553 78999999999987544
No 66
>PRK13365 protocatechuate 4,5-dioxygenase subunit beta; Provisional
Probab=47.19 E-value=25 Score=30.10 Aligned_cols=32 Identities=16% Similarity=0.257 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHcCCCCCEEEEEEcCCCccc
Q psy5200 170 SVDDAVEKIVKELKDLGELNNTYIIYTSDHGYHL 203 (271)
Q Consensus 170 ~~D~~iG~ll~~L~~~g~~~nTivv~tsDHG~~~ 203 (271)
.+.+.+.++-+.+++. .-+|||||.|||+..+
T Consensus 32 ~~~~a~~~i~~~v~~~--~PDviVvi~sdH~~~f 63 (279)
T PRK13365 32 PLFDGYEPVAAWLAEQ--KADVLVFFYNDHCTTF 63 (279)
T ss_pred HHHHHHHHHHHHHHHh--CCCEEEEEcCchHHHh
Confidence 4445555666666655 3789999999999865
No 67
>cd07949 PCA_45_Doxase_B_like_1 The B subunit of unknown Class III extradiol dioxygenases with similarity to Protocatechuate 4,5-dioxygenase. This subfamily is composed of proteins of unknown function with similarity to the B subunit of Protocatechuate 4,5-dioxygenase (LigAB). LigAB belongs to the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Dioxygenases play key roles in the degradation of aromatic compounds. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents the catalytic subunit, B.
Probab=46.03 E-value=26 Score=29.95 Aligned_cols=32 Identities=16% Similarity=0.312 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHcCCCCCEEEEEEcCCCccc
Q psy5200 170 SVDDAVEKIVKELKDLGELNNTYIIYTSDHGYHL 203 (271)
Q Consensus 170 ~~D~~iG~ll~~L~~~g~~~nTivv~tsDHG~~~ 203 (271)
.+-+.+.++-+.+++. .-+|||||++||+..+
T Consensus 32 ~~~~a~~~~~~~v~~~--~PD~iVvis~dH~~~f 63 (276)
T cd07949 32 PFFDGFPPVHDWLEKA--KPDVAVVFYNDHGLNF 63 (276)
T ss_pred HHHHHHHHHHHHHHHc--CCCEEEEECCcHHhhh
Confidence 3444455566666654 3789999988997664
No 68
>PF04852 DUF640: Protein of unknown function (DUF640); InterPro: IPR006936 This conserved region is found in plant proteins including the resistance protein-like protein (O49468 from SWISSPROT).
Probab=45.94 E-value=59 Score=24.29 Aligned_cols=22 Identities=14% Similarity=0.297 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHcCCCCC
Q psy5200 169 QSVDDAVEKIVKELKDLGELNN 190 (271)
Q Consensus 169 ~~~D~~iG~ll~~L~~~g~~~n 190 (271)
--+|..||||..++++.|-.-+
T Consensus 92 GSlDalIGrLraafee~Gg~pe 113 (132)
T PF04852_consen 92 GSLDALIGRLRAAFEEHGGHPE 113 (132)
T ss_pred ccHHHHHHHHHHHHHHhCCCCC
Confidence 4789999999999999985443
No 69
>PF00231 ATP-synt: ATP synthase This Pfam entry corresponds to chain g; InterPro: IPR000131 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. The ATPase F1 complex gamma subunit forms the central shaft that connects the F0 rotary motor to the F1 catalytic core. The gamma subunit functions as a rotary motor inside the cylinder formed by the alpha(3)beta(3) subunits in the F1 complex []. The best-conserved region of the gamma subunit is its C terminus, which seems to be essential for assembly and catalysis. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046933 hydrogen ion transporting ATP synthase activity, rotational mechanism, 0046961 proton-transporting ATPase activity, rotational mechanism, 0015986 ATP synthesis coupled proton transport, 0045261 proton-transporting ATP synthase complex, catalytic core F(1); PDB: 3OFN_G 3FKS_P 3OEE_Y 2HLD_Y 3OEH_Y 2XOK_G 3ZRY_G 3OE7_P 2WPD_G 3OAA_e ....
Probab=44.68 E-value=34 Score=29.40 Aligned_cols=18 Identities=28% Similarity=0.183 Sum_probs=10.8
Q ss_pred CCCCCEEEEEEcCCCccc
Q psy5200 186 GELNNTYIIYTSDHGYHL 203 (271)
Q Consensus 186 g~~~nTivv~tsDHG~~~ 203 (271)
.....-+|||+||.|.+-
T Consensus 72 ~~~~~~~ivitSDrGLCG 89 (290)
T PF00231_consen 72 EVKKVLLIVITSDRGLCG 89 (290)
T ss_dssp --SCEEEEEE--STSSST
T ss_pred ccceEEEEEEecCccccc
Confidence 334556888999999874
No 70
>PF03540 TFIID_30kDa: Transcription initiation factor TFIID 23-30kDa subunit; InterPro: IPR003923 Transcription initiation factor TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors. The complex includes TATA binding protein (TBP) and various TBP-associated factors (TAFS). TFIID a bona fide RNA polymerase II-specific TATA-binding protein-associated factor (TAF) and is essential for viability []. TFIID acts to nucleate the transcription complex, recruiting the rest of the factors through a direct interaction with TFIIB. The TBP subunit of TFIID is sufficient for TATA-element binding and TFIIB interaction, and can support basal transcription. The protein belongs to the TAF2H family.; GO: 0006352 transcription initiation, DNA-dependent, 0005634 nucleus
Probab=42.77 E-value=21 Score=21.99 Aligned_cols=19 Identities=21% Similarity=0.071 Sum_probs=16.3
Q ss_pred CCCchhhhHHHHHhCCCce
Q psy5200 1 MAWPVELTSRNLLYFDISH 19 (271)
Q Consensus 1 ~~~p~~~~~~~Lk~~GY~T 19 (271)
+..|++.+-.+|+++|..|
T Consensus 1 P~IPD~v~~~yL~~~G~~~ 19 (51)
T PF03540_consen 1 PTIPDEVTDYYLERSGFQT 19 (51)
T ss_pred CCCCHHHHHHHHHHCCCCC
Confidence 3578999999999999988
No 71
>COG3885 Uncharacterized conserved protein [Function unknown]
Probab=42.60 E-value=71 Score=26.48 Aligned_cols=37 Identities=22% Similarity=0.299 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCEEEEEEcCCCccccccccC
Q psy5200 168 LQSVDDAVEKIVKELKDLGELNNTYIIYTSDHGYHLGQFGLV 209 (271)
Q Consensus 168 v~~~D~~iG~ll~~L~~~g~~~nTivv~tsDHG~~~g~h~~~ 209 (271)
+...-..++++++.++ ++..+|+++||+...-+-|-.
T Consensus 146 l~~Fg~~l~~~le~~~-----~ki~lIiSaD~aHth~edGPY 182 (261)
T COG3885 146 LVKFGDNLGKALEEYE-----RKISLIISADHAHTHDEDGPY 182 (261)
T ss_pred HHHHHHHHHHHHHHhh-----cceEEEEecccccccCCCCCC
Confidence 4455667888888887 678899999999876555443
No 72
>COG0056 AtpA F0F1-type ATP synthase, alpha subunit [Energy production and conversion]
Probab=41.03 E-value=31 Score=31.55 Aligned_cols=29 Identities=24% Similarity=0.505 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHcCCCCCEEEEEEc--CCC
Q psy5200 172 DDAVEKIVKELKDLGELNNTYIIYTS--DHG 200 (271)
Q Consensus 172 D~~iG~ll~~L~~~g~~~nTivv~ts--DHG 200 (271)
-..|.++++.|++.|.+++|+||-.| |.-
T Consensus 202 ~stva~vv~tL~e~gAmdyTiVV~AsASd~a 232 (504)
T COG0056 202 RSTVANVVRTLEEHGAMDYTIVVAASASDSA 232 (504)
T ss_pred hHHHHHHHHHHHHcCCccceEEEEecCCcch
Confidence 45677899999999999999999886 553
No 73
>PF12646 DUF3783: Domain of unknown function (DUF3783); InterPro: IPR016621 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=39.77 E-value=67 Score=20.19 Aligned_cols=29 Identities=10% Similarity=0.171 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHcCCCCCEEEEEEcCCC
Q psy5200 171 VDDAVEKIVKELKDLGELNNTYIIYTSDHG 200 (271)
Q Consensus 171 ~D~~iG~ll~~L~~~g~~~nTivv~tsDHG 200 (271)
.+.++.++|+.+++.|+ ...+..++..|-
T Consensus 10 ~~~el~~~l~~~r~~~~-~~~~kAvlT~tN 38 (58)
T PF12646_consen 10 SGEELDKFLDALRKAGI-PIPLKAVLTPTN 38 (58)
T ss_pred CHHHHHHHHHHHHHcCC-CcceEEEECCCc
Confidence 46789999999999998 767777766664
No 74
>PRK05621 F0F1 ATP synthase subunit gamma; Validated
Probab=38.72 E-value=58 Score=27.87 Aligned_cols=12 Identities=50% Similarity=0.686 Sum_probs=10.5
Q ss_pred EEEEEcCCCccc
Q psy5200 192 YIIYTSDHGYHL 203 (271)
Q Consensus 192 ivv~tsDHG~~~ 203 (271)
+|||+||+|.+-
T Consensus 77 ~ivitSd~GLCG 88 (284)
T PRK05621 77 YIVVTSDRGLCG 88 (284)
T ss_pred EEEEeCCCcccc
Confidence 799999999873
No 75
>TIGR02049 gshA_ferroox glutamate--cysteine ligase, T. ferrooxidans family. This family consists of a rare family of glutamate--cysteine ligases, demonstrated first in Thiobacillus ferrooxidans and present in a few other Proteobacteria. It is the first of two enzymes for glutathione biosynthesis. It is also called gamma-glutamylcysteine synthetase.
Probab=37.14 E-value=83 Score=28.15 Aligned_cols=37 Identities=24% Similarity=0.394 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCEEEEEEcCCCcc
Q psy5200 166 QTLQSVDDAVEKIVKELKDLGELNNTYIIYTSDHGYH 202 (271)
Q Consensus 166 ~~v~~~D~~iG~ll~~L~~~g~~~nTivv~tsDHG~~ 202 (271)
...+.+|..+.++-++.++.|+.+.-.||+=+|+|..
T Consensus 233 ~lA~~Vd~~L~kir~KY~eYgI~e~PfViVKADaGTY 269 (403)
T TIGR02049 233 ALATAVDQVLSKTQKKYEEYGIHTQPYVIVKADAGTY 269 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCCCC
Confidence 4457899999999999999999999999999999986
No 76
>TIGR01146 ATPsyn_F1gamma ATP synthase, F1 gamma subunit. This model describes the ATP synthase gamma subunit in bacteria and its equivalents in organelles, namely, mitochondria and chloroplast. F1/F0-ATP synthase is a multisubunit, membrane associated enzyme found in bacteria and organelles of higher eukaryotes, namely, mitochondria and chloroplast. This enzyme is principally involed in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. The gamma subunit is the part of F1 cluster. Surrounding the gamma subunit in a cylinder-like structure are three alpha and three subunits in an alternating fashion. This is the central catalytic unit whose different conformations permit the binding of ADP and inorganic phosphate and release of ATP.
Probab=34.91 E-value=77 Score=27.18 Aligned_cols=12 Identities=33% Similarity=0.429 Sum_probs=10.5
Q ss_pred EEEEEcCCCccc
Q psy5200 192 YIIYTSDHGYHL 203 (271)
Q Consensus 192 ivv~tsDHG~~~ 203 (271)
+|||+||+|.+-
T Consensus 78 ~ivitSDrGLCG 89 (287)
T TIGR01146 78 ILVITSDRGLCG 89 (287)
T ss_pred EEEEeCCCCccc
Confidence 789999999874
No 77
>PRK13427 F0F1 ATP synthase subunit gamma; Provisional
Probab=33.82 E-value=84 Score=27.05 Aligned_cols=13 Identities=31% Similarity=0.514 Sum_probs=10.9
Q ss_pred EEEEEcCCCcccc
Q psy5200 192 YIIYTSDHGYHLG 204 (271)
Q Consensus 192 ivv~tsDHG~~~g 204 (271)
+|||+||.|.+-|
T Consensus 79 ~ivitSDrGLcG~ 91 (289)
T PRK13427 79 LLIITANRGLCGG 91 (289)
T ss_pred EEEEeCCCCcccc
Confidence 7899999998743
No 78
>PRK13373 putative dioxygenase; Provisional
Probab=32.53 E-value=95 Score=27.45 Aligned_cols=35 Identities=14% Similarity=0.129 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHcCCCCCEEEEEEcCCCcccccc
Q psy5200 170 SVDDAVEKIVKELKDLGELNNTYIIYTSDHGYHLGQF 206 (271)
Q Consensus 170 ~~D~~iG~ll~~L~~~g~~~nTivv~tsDHG~~~g~h 206 (271)
.+.+.+.++-+.|++. .=+.+|||.+||...+..+
T Consensus 30 ~v~~a~~~ir~~i~e~--kPDVvVv~~nDH~~~Ff~d 64 (344)
T PRK13373 30 RLLQAADRLGRSLDAA--RPDVIIAFLDDHFENHFRS 64 (344)
T ss_pred HHHHHHHHHHHHHHHh--CCCEEEEEccchhhhhccc
Confidence 3444444455555544 2789999999999876433
No 79
>cd07367 CarBb CarBb is the B subunit of the Class III Extradiol ring-cleavage dioxygenase, 2-aminophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-aminophenyl-2,3-diol. CarBb is the B subunit of 2-aminophenol 1,6-dioxygenase (CarB), which catalyzes the oxidization and subsequent ring-opening of 2-aminophenyl-2,3-diol. It is a key enzyme in the carbazole degradation pathway isolated from bacterial strains with carbazole degradation ability. The enzyme is a heterotetramer composed of two A and two B subunits. CarB belongs to the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Although the enzyme was originally isolated as a meta-cleavage enzyme for 2'-aminobiphenyl-2,3-diol involved in carbazole degradation, it has also shown high specificity for 2,3-dihydroxybiphenyl.
Probab=32.28 E-value=74 Score=27.01 Aligned_cols=29 Identities=14% Similarity=0.418 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHcCCCCCEEEEEEcCCCcccc
Q psy5200 174 AVEKIVKELKDLGELNNTYIIYTSDHGYHLG 204 (271)
Q Consensus 174 ~iG~ll~~L~~~g~~~nTivv~tsDHG~~~g 204 (271)
.+.++-+.|++. .-+|||||++||...++
T Consensus 30 al~~~~~~l~~~--~Pd~ivvis~dH~~~~~ 58 (268)
T cd07367 30 GMAEIGRRVRES--RPDVLVVISSDHLFNIN 58 (268)
T ss_pred HHHHHHHHHHHc--CCCEEEEEeCchhhhcc
Confidence 334444455443 36899999999987653
No 80
>PHA02754 hypothetical protein; Provisional
Probab=32.15 E-value=1.3e+02 Score=18.93 Aligned_cols=27 Identities=19% Similarity=0.393 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHcCCC----------CCEEEEEEcCC
Q psy5200 173 DAVEKIVKELKDLGEL----------NNTYIIYTSDH 199 (271)
Q Consensus 173 ~~iG~ll~~L~~~g~~----------~nTivv~tsDH 199 (271)
+...++-+.|.+.|++ .|-|||++||-
T Consensus 18 e~MRelkD~LSe~GiYi~RIkai~~SGdkIVVi~aD~ 54 (67)
T PHA02754 18 EAMRELKDILSEAGIYIDRIKAITTSGDKIVVITADA 54 (67)
T ss_pred HHHHHHHHHHhhCceEEEEEEEEEecCCEEEEEEcce
Confidence 3444566777777774 45677777763
No 81
>PF02739 5_3_exonuc_N: 5'-3' exonuclease, N-terminal resolvase-like domain; InterPro: IPR020046 The N-terminal and internal 5'3'-exonuclease domains are commonly found together, and are most often associated with 5' to 3' nuclease activities. The XPG protein signatures (PDOC00658 from PROSITEDOC) are never found outside the '53EXO' domains. The latter are found in more diverse proteins [, , ]. The number of amino acids that separate the two 53EXO domains, and the presence of accompanying motifs allow the diagnosis of several protein families. In the eubacterial type A DNA-polymerases, the N-terminal and internal domains are separated by a few amino acids, usually four. The pattern DNA_POLYMERASE_A (IPR001098 from INTERPRO) is always present towards the C terminus. Several eukaryotic structure-dependent endonucleases and exonucleases have the 53EXO domains separated by 24 to 27 amino acids, and the XPG protein signatures are always present. In several proteins from herpesviridae, the two 53EXO domains are separated by 50 to 120 amino acids. These proteins are implicated in the inhibition of the expression of the host genes. Eukaryotic DNA repair proteins with 600 to 700 amino acids between the 53_EXO domains all carry the XPG protein signatures. This entry represents the N-terminal resolvase-like domain, which has a 3-layer alpha/beta/alpha core structure and contains an alpha-helical arch [, ].; GO: 0003677 DNA binding, 0008409 5'-3' exonuclease activity; PDB: 1TAQ_A 1BGX_T 1TAU_A 1XO1_B 1EXN_A 1UT8_A 1UT5_B 3H7I_A 3H8J_A 3H8S_A ....
Probab=31.31 E-value=82 Score=24.69 Aligned_cols=30 Identities=23% Similarity=0.367 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHcCCCCCEEEEEEcCCCcc
Q psy5200 170 SVDDAVEKIVKELKDLGELNNTYIIYTSDHGYH 202 (271)
Q Consensus 170 ~~D~~iG~ll~~L~~~g~~~nTivv~tsDHG~~ 202 (271)
..|+.||-+.....+.|. -++|+|+|.-..
T Consensus 109 EADDvIatla~~~~~~~~---~v~IvS~DkD~~ 138 (169)
T PF02739_consen 109 EADDVIATLAKKASEEGF---EVIIVSGDKDLL 138 (169)
T ss_dssp -HHHHHHHHHHHHHHTTC---EEEEE-SSGGGG
T ss_pred cHHHHHHHHHhhhccCCC---EEEEEcCCCCHH
Confidence 469999999999998853 489999999764
No 82
>cd00016 alkPPc Alkaline phosphatase homologues; alkaline phosphatases are non-specific phosphomonoesterases that catalyze the hydrolysis reaction via a phosphoseryl intermediate to produce inorganic phosphate and the corresponding alcohol, optimally at high pH. Alkaline phosphatase exists as a dimer, each monomer binding 2 zinc atoms and one magnesium atom, which are essential for enzymatic activity.
Probab=30.93 E-value=38 Score=30.52 Aligned_cols=24 Identities=13% Similarity=-0.092 Sum_probs=19.6
Q ss_pred chhhhHHHHHhCCCceEEeccccc
Q psy5200 4 PVELTSRNLLYFDISHGYFGKYLN 27 (271)
Q Consensus 4 p~~~~~~~Lk~~GY~T~~~Gk~h~ 27 (271)
|..++++.+|++||+|+.+...-.
T Consensus 97 ~~~ti~e~ak~~G~~tGiVtT~~i 120 (384)
T cd00016 97 PVTSVLEWAKAAGKATGIVTTTRV 120 (384)
T ss_pred chhhHHHHHHHcCCCEEEEeeeec
Confidence 345579999999999999988643
No 83
>cd07359 PCA_45_Doxase_B_like Subunit B of the Class III Extradiol dioxygenase, Protocatechuate 4,5-dioxygenase, and simlar enzymes. This subfamily of class III extradiol dioxygenases consists of a number of proteins with known enzymatic activities: Protocatechuate (PCA) 4,5-dioxygenase (LigAB), 2,3-dihydroxyphenylpropionate 1,2-dioxygenase (MhpB), 3-O-Methylgallate Dioxygenase, 2-aminophenol 1,6-dioxygenase, as well as proteins without any known enzymatic activity. These proteins play essential roles in the degradation of aromatic compounds by catalyzing the incorporation of both atoms of molecular oxygen into their preferred substrates. As members of the Class III extradiol dioxygenase family, the enzymes use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like class III enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model repres
Probab=30.61 E-value=1.2e+02 Score=25.73 Aligned_cols=16 Identities=13% Similarity=0.204 Sum_probs=12.9
Q ss_pred CCCEEEEEEcCCCccc
Q psy5200 188 LNNTYIIYTSDHGYHL 203 (271)
Q Consensus 188 ~~nTivv~tsDHG~~~ 203 (271)
.-+||||+++||...+
T Consensus 44 ~Pd~ivvis~~h~~~~ 59 (271)
T cd07359 44 RPDVVVVVGNDHFTNF 59 (271)
T ss_pred CCCEEEEEeCcHHhhc
Confidence 3689999999997663
No 84
>PF12281 DUF3620: Protein of unknown function (DUF3620); InterPro: IPR022550 Proteins containing this family are found in bacteria, and are typically between 281 and 358 amino acids in length. There are two completely conserved residues (G and P) that may be functionally important.
Probab=30.61 E-value=39 Score=27.79 Aligned_cols=25 Identities=12% Similarity=0.266 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHcCCCCCEEEEEE
Q psy5200 172 DDAVEKIVKELKDLGELNNTYIIYT 196 (271)
Q Consensus 172 D~~iG~ll~~L~~~g~~~nTivv~t 196 (271)
|...|+++++|.+.|++...+|++-
T Consensus 1 ~~~~~~~l~al~~~G~~r~~~vlVG 25 (217)
T PF12281_consen 1 DNKTGRVLRALAAAGLFRLGGVLVG 25 (217)
T ss_pred CchHHHHHHHHHhcCccccCeEEEC
Confidence 5678999999999999988877663
No 85
>PRK14111 F0F1 ATP synthase subunit gamma; Provisional
Probab=30.15 E-value=36 Score=29.31 Aligned_cols=15 Identities=27% Similarity=0.357 Sum_probs=11.9
Q ss_pred CE-EEEEEcCCCcccc
Q psy5200 190 NT-YIIYTSDHGYHLG 204 (271)
Q Consensus 190 nT-ivv~tsDHG~~~g 204 (271)
++ +|||+||+|.+-|
T Consensus 78 ~~~~IvitSDrGLCG~ 93 (290)
T PRK14111 78 RVALILVTPDRGLAGS 93 (290)
T ss_pred ceEEEEEeCCCCcccc
Confidence 45 8999999998743
No 86
>PRK13423 F0F1 ATP synthase subunit gamma; Provisional
Probab=30.10 E-value=92 Score=26.78 Aligned_cols=12 Identities=33% Similarity=0.445 Sum_probs=10.6
Q ss_pred EEEEEcCCCccc
Q psy5200 192 YIIYTSDHGYHL 203 (271)
Q Consensus 192 ivv~tsDHG~~~ 203 (271)
+|||+||.|.+-
T Consensus 78 ~IvitSDrGLCG 89 (288)
T PRK13423 78 LVVVTSDRGLCG 89 (288)
T ss_pred EEEEeCCCCCcc
Confidence 899999999873
No 87
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=30.09 E-value=67 Score=24.09 Aligned_cols=25 Identities=32% Similarity=0.428 Sum_probs=20.5
Q ss_pred HHHHHHHHHcCCCCCEEEEEEcCCCcc
Q psy5200 176 EKIVKELKDLGELNNTYIIYTSDHGYH 202 (271)
Q Consensus 176 G~ll~~L~~~g~~~nTivv~tsDHG~~ 202 (271)
.++++.|++.+ =|+++||..+||..
T Consensus 3 ~~~~~~lk~~~--v~si~i~a~~h~g~ 27 (132)
T PF14871_consen 3 EQFVDTLKEAH--VNSITIFAKCHGGY 27 (132)
T ss_pred HHHHHHHHHhC--CCEEEEEcccccEE
Confidence 46888899887 68999999888853
No 88
>PRK13425 F0F1 ATP synthase subunit gamma; Provisional
Probab=29.54 E-value=1.2e+02 Score=26.20 Aligned_cols=13 Identities=38% Similarity=0.422 Sum_probs=10.9
Q ss_pred EEEEEcCCCcccc
Q psy5200 192 YIIYTSDHGYHLG 204 (271)
Q Consensus 192 ivv~tsDHG~~~g 204 (271)
+|||+||.|.+-|
T Consensus 79 ~ivitSDrGLCG~ 91 (291)
T PRK13425 79 VILITSDRGLCGA 91 (291)
T ss_pred EEEEeCCCccccc
Confidence 7899999998743
No 89
>PRK13424 F0F1 ATP synthase subunit gamma; Provisional
Probab=29.09 E-value=1e+02 Score=26.50 Aligned_cols=12 Identities=33% Similarity=0.429 Sum_probs=10.4
Q ss_pred EEEEEcCCCccc
Q psy5200 192 YIIYTSDHGYHL 203 (271)
Q Consensus 192 ivv~tsDHG~~~ 203 (271)
+|||+||.|.+-
T Consensus 79 ~IvitSDrGLCG 90 (291)
T PRK13424 79 IVLITSDRGLCG 90 (291)
T ss_pred EEEEeCCCcccc
Confidence 688999999874
No 90
>smart00187 INB Integrin beta subunits (N-terminal portion of extracellular region). Portion of beta integrins that lies N-terminal to their EGF-like repeats. Integrins are cell adhesion molecules that mediate cell-extracellular matrix and cell-cell interactions. They contain both alpha and beta subunits. Beta integrins are proposed to have a von Willebrand factor type-A "insert" or "I" -like domain (although this remains to be confirmed).
Probab=28.72 E-value=78 Score=28.84 Aligned_cols=33 Identities=18% Similarity=0.568 Sum_probs=23.3
Q ss_pred HHHHHHHH---HHcCCCCCE--EEEEEcCCCccccccc
Q psy5200 175 VEKIVKEL---KDLGELNNT--YIIYTSDHGYHLGQFG 207 (271)
Q Consensus 175 iG~ll~~L---~~~g~~~nT--ivv~tsDHG~~~g~h~ 207 (271)
+..||.+. ++-|+.+++ ||||++|-+.++.-.|
T Consensus 210 ~DAimQaaVC~~~IGWR~~a~rllv~~TDa~fH~AGDG 247 (423)
T smart00187 210 FDAIMQAAVCTEQIGWREDARRLLVFSTDAGFHFAGDG 247 (423)
T ss_pred HHHHHHHHhhccccccCCCceEEEEEEcCCCccccCCc
Confidence 33455555 777887655 9999999999864333
No 91
>TIGR03323 alt_F1F0_F1_gam alternate F1F0 ATPase, F1 subunit gamma. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 gamma subunit of this apparent second ATP synthase.
Probab=28.36 E-value=1.2e+02 Score=26.06 Aligned_cols=13 Identities=31% Similarity=0.416 Sum_probs=11.0
Q ss_pred EEEEEcCCCcccc
Q psy5200 192 YIIYTSDHGYHLG 204 (271)
Q Consensus 192 ivv~tsDHG~~~g 204 (271)
+|||+||+|.+-|
T Consensus 74 ~IvitSDrGLCG~ 86 (285)
T TIGR03323 74 AIVFGSDQGLVGQ 86 (285)
T ss_pred EEEEECCCcCchH
Confidence 7999999998743
No 92
>PRK13422 F0F1 ATP synthase subunit gamma; Provisional
Probab=26.51 E-value=1e+02 Score=26.70 Aligned_cols=13 Identities=38% Similarity=0.738 Sum_probs=11.1
Q ss_pred EEEEEcCCCcccc
Q psy5200 192 YIIYTSDHGYHLG 204 (271)
Q Consensus 192 ivv~tsDHG~~~g 204 (271)
+|||+||+|.+-|
T Consensus 78 ~IvitSDrGLCG~ 90 (298)
T PRK13422 78 YIVTSTDRGLCGG 90 (298)
T ss_pred EEEEeCCcccccc
Confidence 7999999998744
No 93
>PF08886 GshA: Glutamate-cysteine ligase; InterPro: IPR011718 This entry represents a rare family of glutamate--cysteine ligases, demonstrated first in Thiobacillus ferrooxidans and present in a few other Proteobacteria []. It is the first of two enzymes for glutathione biosynthesis. It is also called gamma-glutamylcysteine synthetase.; PDB: 3K1T_A.
Probab=26.37 E-value=98 Score=27.79 Aligned_cols=37 Identities=24% Similarity=0.369 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCEEEEEEcCCCcc
Q psy5200 166 QTLQSVDDAVEKIVKELKDLGELNNTYIIYTSDHGYH 202 (271)
Q Consensus 166 ~~v~~~D~~iG~ll~~L~~~g~~~nTivv~tsDHG~~ 202 (271)
...+.+|..+.++-++.++.|+.+.-.||+=+|.|..
T Consensus 236 ~La~~Vd~lL~kir~KY~eygI~e~PfV~VKAD~GTY 272 (404)
T PF08886_consen 236 CLASAVDQLLAKIRKKYKEYGIKEKPFVFVKADAGTY 272 (404)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT--S---EEEEEE-GGG
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCceEEEEcCCCCC
Confidence 3457899999999999999999999999999999986
No 94
>PF14556 AF2331-like: AF2331-like; PDB: 2FDO_A.
Probab=26.30 E-value=75 Score=21.56 Aligned_cols=23 Identities=17% Similarity=0.143 Sum_probs=13.8
Q ss_pred HHHHHHHcCCCCCEEEEEEcCCCc
Q psy5200 178 IVKELKDLGELNNTYIIYTSDHGY 201 (271)
Q Consensus 178 ll~~L~~~g~~~nTivv~tsDHG~ 201 (271)
+++.|+ ..+.++|++|++||--.
T Consensus 11 FlkFle-knl~ed~vvvVSSDVtD 33 (93)
T PF14556_consen 11 FLKFLE-KNLEEDKVVVVSSDVTD 33 (93)
T ss_dssp HHHHHH-CC--TTEEEEEE--EEE
T ss_pred HHHHHH-hccCCCeEEEEeccchH
Confidence 555565 34569999999999754
No 95
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=25.81 E-value=92 Score=24.54 Aligned_cols=24 Identities=25% Similarity=0.282 Sum_probs=16.8
Q ss_pred HHHHHHHcCCCCCEEEEEEcCCCc
Q psy5200 178 IVKELKDLGELNNTYIIYTSDHGY 201 (271)
Q Consensus 178 ll~~L~~~g~~~nTivv~tsDHG~ 201 (271)
+++++++....+=|+|.+|+..|.
T Consensus 125 Vl~Ai~~Ak~~gm~vI~ltG~~GG 148 (176)
T COG0279 125 VLKAIEAAKEKGMTVIALTGKDGG 148 (176)
T ss_pred HHHHHHHHHHcCCEEEEEecCCCc
Confidence 555555555556689999998874
No 96
>PF05762 VWA_CoxE: VWA domain containing CoxE-like protein; InterPro: IPR008912 This group of proteins contains a VWA type domain and the function of this family is unknown. It is found as part of a CO oxidising (Cox) system operon in several bacteria [].
Probab=24.80 E-value=92 Score=25.53 Aligned_cols=28 Identities=14% Similarity=0.298 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHcCCCCCEEEEEEcC
Q psy5200 170 SVDDAVEKIVKELKDLGELNNTYIIYTSD 198 (271)
Q Consensus 170 ~~D~~iG~ll~~L~~~g~~~nTivv~tsD 198 (271)
.+-..+.++.+.+.+..+ .+|.||+.||
T Consensus 131 di~~aL~~~~~~~~~~~~-~~t~vvIiSD 158 (222)
T PF05762_consen 131 DIGQALREFLRQYARPDL-RRTTVVIISD 158 (222)
T ss_pred HHHHHHHHHHHHhhcccc-cCcEEEEEec
Confidence 344556666666665666 7999999999
No 97
>PF14104 DUF4277: Domain of unknown function (DUF4277)
Probab=24.03 E-value=64 Score=23.64 Aligned_cols=19 Identities=26% Similarity=0.431 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHcCC
Q psy5200 169 QSVDDAVEKIVKELKDLGE 187 (271)
Q Consensus 169 ~~~D~~iG~ll~~L~~~g~ 187 (271)
..-|+.+||.+++|-+.|.
T Consensus 87 ~lNDD~lGR~LD~ly~~g~ 105 (115)
T PF14104_consen 87 DLNDDALGRTLDKLYEAGP 105 (115)
T ss_pred HcchHHHHHHHHHHHHcCH
Confidence 4679999999999999885
No 98
>PRK13370 mhpB 3-(2,3-dihydroxyphenyl)propionate dioxygenase; Provisional
Probab=23.92 E-value=1.8e+02 Score=25.46 Aligned_cols=33 Identities=9% Similarity=0.125 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHcCCCCCEEEEEEcCCCcccc
Q psy5200 170 SVDDAVEKIVKELKDLGELNNTYIIYTSDHGYHLG 204 (271)
Q Consensus 170 ~~D~~iG~ll~~L~~~g~~~nTivv~tsDHG~~~g 204 (271)
.+++.+.++-+.+++. .-+|||||+.||...++
T Consensus 26 ~v~~a~~~l~~~l~~~--~PD~iVIigpdH~~~f~ 58 (313)
T PRK13370 26 EVNAVIAAAREFVAAF--DPELVVLFAPDHYNGFF 58 (313)
T ss_pred HHHHHHHHHHHHHHHh--CCCEEEEEcCCcccccc
Confidence 4445555666666544 36899999999998743
No 99
>PF10673 DUF2487: Protein of unknown function (DUF2487); InterPro: IPR019615 This entry represents proteins with unknown function that appears to be restricted to Bacillus sp.
Probab=23.24 E-value=1.2e+02 Score=23.15 Aligned_cols=29 Identities=24% Similarity=0.298 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHcCCCCCEEEEEEcCCCcc
Q psy5200 172 DDAVEKIVKELKDLGELNNTYIIYTSDHGYH 202 (271)
Q Consensus 172 D~~iG~ll~~L~~~g~~~nTivv~tsDHG~~ 202 (271)
...+.+.-+.|++.|.. -+|++|||+.+.
T Consensus 70 ~~~L~~w~~~l~~~GFk--hV~~lT~D~~Wk 98 (142)
T PF10673_consen 70 VERLNDWCEELKESGFK--HVFYLTSDSEWK 98 (142)
T ss_pred HHHHHHHHHHHHhcCCc--EEEEEecCcccc
Confidence 35667788899999965 489999998753
No 100
>PF15656 Tox-HDC: Toxin with a H, D/N and C signature
Probab=22.54 E-value=1.4e+02 Score=22.06 Aligned_cols=31 Identities=23% Similarity=0.334 Sum_probs=24.1
Q ss_pred HHHHHHHHHHcC-CCCCEEEEEEcCCCccccc
Q psy5200 175 VEKIVKELKDLG-ELNNTYIIYTSDHGYHLGQ 205 (271)
Q Consensus 175 iG~ll~~L~~~g-~~~nTivv~tsDHG~~~g~ 205 (271)
|..-|+.|.+.. .-..+|+|+++=||...|.
T Consensus 14 i~~pl~~Iar~~s~~~~~I~IlSGtHG~~~G~ 45 (119)
T PF15656_consen 14 INAPLETIARRPSGDNGDIHILSGTHGYCSGQ 45 (119)
T ss_pred hHHHHHHHHhCcCCCCCCEEEEeCCCCCcccc
Confidence 667788888754 2477899999999988763
No 101
>COG1355 Predicted dioxygenase [General function prediction only]
Probab=22.44 E-value=1.5e+02 Score=25.31 Aligned_cols=30 Identities=17% Similarity=0.241 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCEEEEEEcCCC
Q psy5200 169 QSVDDAVEKIVKELKDLGELNNTYIIYTSDHG 200 (271)
Q Consensus 169 ~~~D~~iG~ll~~L~~~g~~~nTivv~tsDHG 200 (271)
..++..+|+.+-++-+.- +|++||-+||=-
T Consensus 164 ~~~a~~ig~~i~k~i~e~--~~~liIaSSDf~ 193 (279)
T COG1355 164 KEVARDIGRAIAKVIKEL--GDALIIASSDFT 193 (279)
T ss_pred HHHHHHHHHHHHHHHhhc--CCeEEEEecCcc
Confidence 356788888776665442 289999999954
No 102
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=22.16 E-value=1.1e+02 Score=26.37 Aligned_cols=26 Identities=27% Similarity=0.359 Sum_probs=22.0
Q ss_pred HHHHHHHHcCCCCCEEEEEEcCCCcc
Q psy5200 177 KIVKELKDLGELNNTYIIYTSDHGYH 202 (271)
Q Consensus 177 ~ll~~L~~~g~~~nTivv~tsDHG~~ 202 (271)
.+-+.|.+.|+.+|+.||+..|.|..
T Consensus 77 ~fa~~~~~~GI~~d~tVVvYdd~~~~ 102 (285)
T COG2897 77 QFAKLLGELGIRNDDTVVVYDDGGGF 102 (285)
T ss_pred HHHHHHHHcCCCCCCEEEEECCCCCe
Confidence 46677888999999999999998765
No 103
>cd07361 MEMO_like Memo (mediator of ErbB2-driven cell motility) is co-precipitated with the C terminus of ErbB2, a protein involved in cell motility. This subfamily is composed of Memo (mediator of ErbB2-driven cell motility) and similar proteins. Memo is a protein that is co-precipitated with the C terminus of ErbB2, a protein involved in cell motility. It is required for the ErbB2-driven cell mobility and is found in protein complexes with cofilin, ErbB2 and PLCgamma1. However, Memo is not homologous to any known signaling proteins, and its function in ErbB2 signaling is not known. Structural studies show that Memo binds directly to a specific ErbB2-derived phosphopeptide. Memo is homologous to class III nonheme iron-dependent extradiol dioxygenases, however, no metal binding or enzymatic activity can be detected for Memo. This subfamily also contains a few members containing a C-terminal AMMECR1-like domain. The AMMECR1 protein was proposed to be a regulatory factor that is potentia
Probab=22.11 E-value=1.1e+02 Score=25.81 Aligned_cols=26 Identities=23% Similarity=0.298 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHcCCCCCEEEEEEcCCCc
Q psy5200 173 DAVEKIVKELKDLGELNNTYIIYTSDHGY 201 (271)
Q Consensus 173 ~~iG~ll~~L~~~g~~~nTivv~tsDHG~ 201 (271)
..+|++|..+ .. .++++||.+||--.
T Consensus 157 ~~~g~~l~~~-~~--~~~~~iV~SsDlSH 182 (266)
T cd07361 157 EALAEALSKY-LL--DPDTLIVISSDFSH 182 (266)
T ss_pred HHHHHHHHHH-hc--CCCeEEEEeCCCCC
Confidence 3577777777 22 37899999999653
No 104
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=22.08 E-value=87 Score=24.74 Aligned_cols=26 Identities=27% Similarity=0.382 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHcCCCCCEEEEEEcCCCcc
Q psy5200 174 AVEKIVKELKDLGELNNTYIIYTSDHGYH 202 (271)
Q Consensus 174 ~iG~ll~~L~~~g~~~nTivv~tsDHG~~ 202 (271)
.+..+|+.|++.|+ .++|+|+|+-..
T Consensus 131 ~~~~~l~~L~~~Gi---~~~i~TGD~~~~ 156 (215)
T PF00702_consen 131 GAKEALQELKEAGI---KVAILTGDNEST 156 (215)
T ss_dssp THHHHHHHHHHTTE---EEEEEESSEHHH
T ss_pred hhhhhhhhhhccCc---ceeeeecccccc
Confidence 35578999999987 689999997543
No 105
>PRK00105 cobT nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase; Reviewed
Probab=21.99 E-value=75 Score=28.08 Aligned_cols=16 Identities=19% Similarity=0.457 Sum_probs=13.1
Q ss_pred CCCCEEEEEEcCCCcc
Q psy5200 187 ELNNTYIIYTSDHGYH 202 (271)
Q Consensus 187 ~~~nTivv~tsDHG~~ 202 (271)
+...+++||.+|||-.
T Consensus 44 ~~~~~~~vfaaDHGv~ 59 (335)
T PRK00105 44 VERPAVVVFAGDHGVA 59 (335)
T ss_pred CCCCEEEEEeCCCCcc
Confidence 4577899999999953
No 106
>smart00470 ParB ParB-like nuclease domain. Plasmid RK2 ParB preferentially cleaves single-stranded DNA. ParB also nicks supercoiled plasmid DNA preferably at sites with potential single-stranded character, like AT-rich regions and sequences that can form cruciform structures. ParB also exhibits 5--3 exonuclease activity.
Probab=21.62 E-value=1e+02 Score=20.83 Aligned_cols=54 Identities=24% Similarity=0.354 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHcCCCCCEEEEEEcCCCccc---cccccCCCCCCCCCCCceeeEEEEcC
Q psy5200 171 VDDAVEKIVKELKDLGELNNTYIIYTSDHGYHL---GQFGLVKGKSFPFEFDIRVPFLMRGP 229 (271)
Q Consensus 171 ~D~~iG~ll~~L~~~g~~~nTivv~tsDHG~~~---g~h~~~~~k~~~~e~~~~VPlii~~P 229 (271)
-+..+..+.+.+++.|+.. -++|.-.+ |... |.|.+...+.. +...||+++...
T Consensus 19 ~~~~~~~l~~si~~~G~~~-Pi~v~~~~-g~~~vidG~~R~~A~~~l---g~~~ip~~v~~~ 75 (89)
T smart00470 19 SEESLEELAESIKENGLLQ-PIIVRPND-GRYEIIDGERRLRAAKLL---GLKEVPVIVRDL 75 (89)
T ss_pred CHHHHHHHHHHHHHhCCcc-CeEEEecC-CcEEEEeCHHHHHHHHHc---CCCceeEEEEcC
Confidence 3577888999999999885 46665555 4332 55544322221 123689888653
No 107
>PF05402 PqqD: Coenzyme PQQ synthesis protein D (PqqD); InterPro: IPR008792 This family contains several bacterial coenzyme PQQ synthesis protein D (PqqD) sequences. This protein is required for coenzyme pyrrolo-quinoline-quinone (PQQ) biosynthesis.; PDB: 3G2B_A.
Probab=21.36 E-value=2e+02 Score=18.12 Aligned_cols=35 Identities=17% Similarity=0.347 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Q psy5200 154 RQFTDLLMTKRLQTLQSVDDAVEKIVKELKDLGEL 188 (271)
Q Consensus 154 ~~~~~~~~~~y~~~v~~~D~~iG~ll~~L~~~g~~ 188 (271)
.+..+.....|......+...+-.+++.|.+.|+.
T Consensus 33 ~ei~~~l~~~y~~~~~~~~~dv~~fl~~L~~~glI 67 (68)
T PF05402_consen 33 EEIVDALAEEYDVDPEEAEEDVEEFLEQLREKGLI 67 (68)
T ss_dssp HHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCcCc
Confidence 34455666778777777889999999999999864
No 108
>TIGR03160 cobT_DBIPRT nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase. Members of this family are nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase, an enzyme of cobalamin biosynthesis.
Probab=21.33 E-value=70 Score=28.23 Aligned_cols=16 Identities=19% Similarity=0.416 Sum_probs=13.0
Q ss_pred CCCCEEEEEEcCCCcc
Q psy5200 187 ELNNTYIIYTSDHGYH 202 (271)
Q Consensus 187 ~~~nTivv~tsDHG~~ 202 (271)
+....+|||.+|||-.
T Consensus 43 ~~~~~~~vfaaDHGv~ 58 (333)
T TIGR03160 43 IDRPAVVVFAGDHGVA 58 (333)
T ss_pred CCCceEEEEeCCCCcc
Confidence 3467899999999964
No 109
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=21.21 E-value=1.5e+02 Score=18.70 Aligned_cols=26 Identities=42% Similarity=0.612 Sum_probs=19.5
Q ss_pred HHHHHHHHHHcCCCCCEEEEEEcCCCcccc
Q psy5200 175 VEKIVKELKDLGELNNTYIIYTSDHGYHLG 204 (271)
Q Consensus 175 iG~ll~~L~~~g~~~nTivv~tsDHG~~~g 204 (271)
+..+++..++.|+. .|..+||+...|
T Consensus 17 ~~~~~~~a~~~g~~----~v~iTDh~~~~~ 42 (67)
T smart00481 17 PEELVKRAKELGLK----AIAITDHGNLFG 42 (67)
T ss_pred HHHHHHHHHHcCCC----EEEEeeCCcccC
Confidence 55788899988864 667889996543
No 110
>COG4077 Uncharacterized protein conserved in archaea [Function unknown]
Probab=20.54 E-value=1.3e+02 Score=22.67 Aligned_cols=28 Identities=21% Similarity=0.426 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCEE
Q psy5200 165 LQTLQSVDDAVEKIVKELKDLGELNNTY 192 (271)
Q Consensus 165 ~~~v~~~D~~iG~ll~~L~~~g~~~nTi 192 (271)
.+.|..+|++|-++.+.+.+..+.-+|+
T Consensus 76 ~elI~e~De~vr~~vei~te~~i~~d~~ 103 (156)
T COG4077 76 VELIKEIDEFVRRIVEILTENPIYPDTF 103 (156)
T ss_pred HHHHHHHHHHHHHHHHhhhcCCCccCcc
Confidence 3568889999999999999888876663
No 111
>KOG1976|consensus
Probab=20.51 E-value=1.2e+02 Score=26.27 Aligned_cols=31 Identities=32% Similarity=0.497 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHcCCCCCEEEEEEcCCCccc
Q psy5200 172 DDAVEKIVKELKDLGELNNTYIIYTSDHGYHL 203 (271)
Q Consensus 172 D~~iG~ll~~L~~~g~~~nTivv~tsDHG~~~ 203 (271)
-++|+-+|+.|.+.|+.. +.+++.+|--..+
T Consensus 200 ~~al~~vL~el~~~~~~~-~~~fVfGdfNfrL 230 (391)
T KOG1976|consen 200 EQALEMVLKELDEEGLRN-DAIFVFGDFNFRL 230 (391)
T ss_pred HHHHHHHHHHHHhhccCc-eEEEEeccccccc
Confidence 467899999999999654 5666667766554
No 112
>PF04666 Glyco_transf_54: N-Acetylglucosaminyltransferase-IV (GnT-IV) conserved region; InterPro: IPR006759 The complex-type of oligosaccharides are synthesised through elongation by glycosyltransferases after trimming of the precursor oligosaccharides transferred to proteins in the endoplasmic reticulum. N-Acetylglucosaminyltransferases (GnTs) take part in the formation of branches in the biosynthesis of complex-type sugar chains. In vertebrates, six GnTs, designated as GnT-I to -VI, which catalyse the transfer of GlcNAc to the core mannose residues of Asn-linked sugar chains, have been identified. GnT-IV (2.4.1.145 from EC) catalyzes the transfer of GlcNAc from UDP-GlcNAc to the GlcNAc1-2Man1-3 arm of core oligosaccharide [Gn2(22)core oligosaccharide] and forms a GlcNAc1-4(GlcNAc1-2)Man1-3 structure on the core oligosaccharide (Gn3(2,4,2)core oligosaccharide). In some members the conserved region occupies all but the very N-terminal, where there is a signal sequence on all members. For other members the conserved region does not occupy the entire protein but is still to the N-terminal end of the protein [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0016020 membrane
Probab=20.40 E-value=79 Score=27.41 Aligned_cols=33 Identities=9% Similarity=0.121 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCEEEEEEcCCCc
Q psy5200 169 QSVDDAVEKIVKELKDLGELNNTYIIYTSDHGY 201 (271)
Q Consensus 169 ~~~D~~iG~ll~~L~~~g~~~nTivv~tsDHG~ 201 (271)
+|+.+-|+.|++.|......+-.|||+.+|--.
T Consensus 67 sYL~~TL~SLl~~ls~~Er~~i~IvVllAd~Dp 99 (297)
T PF04666_consen 67 SYLLDTLASLLDGLSPEERKDIVIVVLLADTDP 99 (297)
T ss_pred chHHHHHHHHHHhCCHHHhcCeEEEEEecCCCh
Confidence 799999999999999998888888899998754
No 113
>PF01650 Peptidase_C13: Peptidase C13 family; InterPro: IPR001096 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C13 (legumain family, clan CD). A type example is legumain from Canavalia ensiformis (Jack bean, Horse bean). The blood fluke parasite Schistosoma mansoni has two cysteine proteases in its digestive tract, one a cathepsin B-like protease, the other termed hemoglobinase [, ]. The latter has been hard to purify, free of cathepsin B, and expressed forms in Escherichia coli prove to be inactive, suggesting that hemoglobinase may act in association with cathepsin B [, ]. Plant vacuolar processing enzyme and legumain from legumes [] have been shown to have sequence and functional similarity to hemoglobinase. The catalytic residues of the family are currently unknown, but sequence alignments reveal one totally conserved cysteine and two totally conserved histidines.; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis
Probab=20.06 E-value=69 Score=27.06 Aligned_cols=12 Identities=42% Similarity=0.839 Sum_probs=0.0
Q ss_pred CCEEEEEEcCCC
Q psy5200 189 NNTYIIYTSDHG 200 (271)
Q Consensus 189 ~nTivv~tsDHG 200 (271)
++.|+||++|||
T Consensus 106 ~D~vfiy~~~HG 117 (256)
T PF01650_consen 106 NDNVFIYFTGHG 117 (256)
T ss_pred CCeEEEEEeccC
Done!