RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy5200
(271 letters)
>gnl|CDD|216172 pfam00884, Sulfatase, Sulfatase.
Length = 332
Score = 82.9 bits (205), Expect = 2e-18
Identities = 38/184 (20%), Positives = 67/184 (36%), Gaps = 34/184 (18%)
Query: 52 NYSINMNGRKIKHGEDYYNDYYPDLIANDSVRFLRQSKQSFSKKPIMLVMSFPAPHGPED 111
+ + + ++++ FL + + F LV+ HGP
Sbjct: 123 TGEDLYKDPEDVGYNCSGGGVSDEALLDEALEFLDNNDKPF-----FLVLHTMGSHGPPY 177
Query: 112 SAPQYANMFFNVTSHHTPAYDYAPNPDKQWILQVTRKMQPVHRQFTDLLMTKRLQTLQSV 171
+Y + +P + L+ +L
Sbjct: 178 YPDRYPEKY--------------------------ATFKPTSTCSEEQLLNSYDNSLLYT 211
Query: 172 DDAVEKIVKELKDLGELNNTYIIYTSDHGYHLGQFGLVKG--KSFPFEFDIRVPFLMRGP 229
DDA+ +++++L++ G L+NT ++YTSDHG LG G + G E RVP L+ P
Sbjct: 212 DDAIGRVLEKLEN-GLLDNTLVVYTSDHGPSLGGGGYLHGGKTDNAPEGGYRVPLLIWSP 270
Query: 230 GIVP 233
G P
Sbjct: 271 GGKP 274
>gnl|CDD|237491 PRK13759, PRK13759, arylsulfatase; Provisional.
Length = 485
Score = 69.7 bits (171), Expect = 1e-13
Identities = 42/160 (26%), Positives = 74/160 (46%), Gaps = 15/160 (9%)
Query: 77 IANDSVRFLRQSKQSFSKKPIMLVMSFPAPHGPEDSAPQYANMFFNVTSHHTPAYD--YA 134
+ ++S+ FLR+ + KP L MSF PH P D +Y +M+ + D YA
Sbjct: 185 VGSESIEFLRRRDPT---KPFFLKMSFARPHSPYDPPKRYFDMYKDADIPDPHIGDWEYA 241
Query: 135 PNPDKQWILQVTRKMQPVHRQFTDLLMTKRLQ----TLQSVDDAVEKIVKELKDLGELNN 190
+ D + + + + + + +D + + ++ LK+ G L+N
Sbjct: 242 EDQDPE-----GGSIDALRGNLGEEYARRARAAYYGLITHIDHQIGRFLQALKEFGLLDN 296
Query: 191 TYIIYTSDHGYHLGQFGLVKGKSFPFEFDIRVPFLMRGPG 230
T I++ SDHG LG L + K +P+E +PF++ PG
Sbjct: 297 TIILFVSDHGDMLGDHYLFR-KGYPYEGSAHIPFIIYDPG 335
>gnl|CDD|225661 COG3119, AslA, Arylsulfatase A and related enzymes [Inorganic ion
transport and metabolism].
Length = 475
Score = 66.3 bits (162), Expect = 2e-12
Identities = 54/200 (27%), Positives = 85/200 (42%), Gaps = 29/200 (14%)
Query: 65 GEDYYNDYYPDLIANDSVRFLRQSKQSFSKKPIMLVMSFPAPHGPEDSAPQYANMFFNVT 124
E+ A+ + RF RQ+K+ KP L+ + AP P+ + F
Sbjct: 157 QEEGDPYVAGKDSADLADRFRRQAKEDAPDKPPFLLTAPFAPPAPDP-------VDFEWP 209
Query: 125 SHHTPAYDYAPNPDKQWIL-QVTRKMQPVHRQFTDLLMTK-------RLQTL-----QSV 171
+ YD A D+ + L R + RL T+ + +
Sbjct: 210 DEYRGFYDRAKRLDRPFFLYLAPPDPHLSRRLPAADGLPAEEEEDGARLMTVYAACVRYL 269
Query: 172 DDAVEKIVKELKDLGELNNTYIIYTSDHGYHLGQFG--LVKGKSFPFEFDIRVPFLMRGP 229
DD + +++ LK+LG L+NT +++TSDHG LG G K +E RVP ++R P
Sbjct: 270 DDQIGRLLDALKELGLLDNTIVVFTSDHGAWLGAHGTPFRGYKGTLYEGGTRVPLIIRWP 329
Query: 230 G-IVPGT------MYLLDVL 242
G I PG + L+D+L
Sbjct: 330 GGIKPGGRVVDALVSLIDLL 349
>gnl|CDD|234202 TIGR03417, chol_sulfatase, choline-sulfatase.
Length = 500
Score = 50.5 bits (121), Expect = 3e-07
Identities = 45/168 (26%), Positives = 74/168 (44%), Gaps = 12/168 (7%)
Query: 73 YPDLIANDSVRFLRQSKQSFSKKPIMLVMSFPAPHGPEDSAPQYANMFFNVTSHHTP--A 130
Y D +A + + L + +P L +SF PH P +Y +++ P A
Sbjct: 161 YDDEVAFHARQKLYDLARGKDDRPFCLTVSFTHPHDPYVIRRKYWDLY-EDCEILMPEVA 219
Query: 131 YDYAP-NPDKQWILQV--TRKMQPVHRQFTDLLMTKR--LQTLQSVDDAVEKIVKELKDL 185
YA +P Q +L R Q +R + +DD + +++ L++
Sbjct: 220 IPYAEQDPHSQRLLDACDLRNFPITDEQIRR---ARRAYFGAISYIDDKIGELLDTLEET 276
Query: 186 GELNNTYIIYTSDHGYHLGQFGLVKGKSFPFEFDIRVPFLMRGPGIVP 233
+ ++T I++TSDHG LG+ GL SF FE RVP ++ PG
Sbjct: 277 RQADDTIIVFTSDHGDMLGERGLWYKMSF-FEGSARVPLMIAAPGRFA 323
>gnl|CDD|225625 COG3083, COG3083, Predicted hydrolase of alkaline phosphatase
superfamily [General function prediction only].
Length = 600
Score = 44.3 bits (105), Expect = 4e-05
Identities = 21/92 (22%), Positives = 41/92 (44%), Gaps = 7/92 (7%)
Query: 147 RKMQPVHRQFTDLLMTKRLQTLQSVDDAVEKIVKELKDLGELNNTYIIYTSDHGYHL--- 203
Q + L+ VD + +++++L++ G L+NT +I T+DHG
Sbjct: 411 SSNQAK---ARPPFKNRYQNALREVDSQIGRVLEQLRNSGLLDNTVVIITADHGEEFNEE 467
Query: 204 GQFGLVKGKSFPFEFDIRVPFLMRGPGIVPGT 235
Q G ++ + ++VP ++ PG G
Sbjct: 468 EQNYWGHGTNYS-RYQLQVPLVIHWPGTPAGR 498
>gnl|CDD|224287 COG1368, MdoB, Phosphoglycerol transferase and related proteins,
alkaline phosphatase superfamily [Cell envelope
biogenesis, outer membrane].
Length = 650
Score = 44.0 bits (104), Expect = 5e-05
Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 4/78 (5%)
Query: 158 DLLMTKRLQTLQSVDDAVEKIVKELKDLGELNNTYIIYTSDH----GYHLGQFGLVKGKS 213
+ LQ + D+A+ + + +LK G N+ I+ DH G GKS
Sbjct: 450 STALANYLQAVHYADEALGQFIDKLKKSGLYKNSVIVLYGDHYGISGNQNLAMPKFLGKS 509
Query: 214 FPFEFDIRVPFLMRGPGI 231
+ + RVP L+ PGI
Sbjct: 510 YDIDMLQRVPLLIHAPGI 527
>gnl|CDD|216635 pfam01663, Phosphodiest, Type I phosphodiesterase / nucleotide
pyrophosphatase. This family consists of
phosphodiesterases, including human plasma-cell membrane
glycoprotein PC-1 / alkaline phosphodiesterase i /
nucleotide pyrophosphatase (nppase). These enzymes
catalyze the cleavage of phosphodiester and
phosphosulfate bonds in NAD, deoxynucleotides and
nucleotide sugars. Also in this family is ATX an
autotaxin, tumour cell motility-stimulating protein
which exhibits type I phosphodiesterases activity. The
alignment encompasses the active site. Also present with
in this family is 60-kDa Ca2+-ATPase form F. odoratum.
Length = 342
Score = 41.2 bits (97), Expect = 3e-04
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 164 RLQTLQSVDDAVEKIVKELKDLGELNNTYIIYTSDHG 200
L+ VD A+ ++++ L + G L NT +I SDHG
Sbjct: 189 VEDALRRVDRAIGRLLEALDERGLLENTNVIVVSDHG 225
>gnl|CDD|217311 pfam02995, DUF229, Protein of unknown function (DUF229). Members
of this family are uncharacterized. They are 500-1200
amino acids in length and share a long region
conservation that probably corresponds to several
domains. The Go annotation for the protein indicates
that it is involved in nematode larval development and
has a positive regulation on growth rate.
Length = 492
Score = 36.5 bits (85), Expect = 0.011
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 171 VDDAVEKIVKELKDLGELNNTYIIYTSDHGYHLGQF 206
+D+ + +K+L + G L NT +I+ SDHG G+
Sbjct: 311 LDEDLLNYLKKLHERGLLENTIVIFMSDHGLRFGKL 346
>gnl|CDD|153368 cd07684, F-BAR_srGAP3, The F-BAR (FES-CIP4 Homology and
Bin/Amphiphysin/Rvs) domain of Slit-Robo GTPase
Activating Protein 3. F-BAR domains are dimerization
modules that bind and bend membranes and are found in
proteins involved in membrane dynamics and actin
reorganization. Slit-Robo GTPase Activating Proteins
(srGAPs) are Rho GAPs that interact with Robo1, the
transmembrane receptor of Slit proteins. Slit proteins
are secreted proteins that control axon guidance and the
migration of neurons and leukocytes. Vertebrates contain
three isoforms of srGAPs. srGAP3, also called MEGAP
(MEntal disorder associated GTPase-Activating Protein),
is a Rho GAP with activity towards Rac1 and Cdc42. It
impacts cell migration by regulating actin and
microtubule cytoskeletal dynamics. The association
between srGAP3 haploinsufficiency and mental retardation
is under debate. srGAP3 contains an N-terminal F-BAR
domain, a Rho GAP domain, and a C-terminal SH3 domain.
F-BAR domains form banana-shaped dimers with a
positively-charged concave surface that binds to
negatively-charged lipid membranes. They can induce
membrane deformation in the form of long tubules.
Length = 253
Score = 34.7 bits (79), Expect = 0.035
Identities = 26/129 (20%), Positives = 50/129 (38%), Gaps = 13/129 (10%)
Query: 85 LRQSKQSFSKKPIMLVMSFPAPHGPEDSAPQYANMFFNVTSHHTPAYDYAPNPDKQW--I 142
L Q Q F ++ + + + E A ++++ H +P W +
Sbjct: 20 LLQDLQEFFRRKAEIELEYS--RSLEKLAERFSSKIRTSREHQFKKDQQLLSPVNCWYLV 77
Query: 143 LQVTRKMQPVHRQFTDLLMTKRLQTLQSVDDAVEKIVKELKDLG-----EL----NNTYI 193
L+ TR+ H D+ + L + + V ++ K+ K++G EL N Y
Sbjct: 78 LEQTRRESRDHATLNDIFNNNVIVRLSQISEDVIRLFKKSKEIGLQMHEELLKVTNELYT 137
Query: 194 IYTSDHGYH 202
+ + H YH
Sbjct: 138 VMKTYHMYH 146
>gnl|CDD|183224 PRK11598, PRK11598, putative metal dependent hydrolase;
Provisional.
Length = 545
Score = 34.3 bits (79), Expect = 0.069
Identities = 31/117 (26%), Positives = 44/117 (37%), Gaps = 32/117 (27%)
Query: 127 HTPAYDYAPNPDKQWILQVTRKMQPVHRQFTDLLMTKRLQ-------------TLQSVDD 173
H P Y Y + P R+FT T +Q T+ VD
Sbjct: 384 HGPTY-Y-------------NRYPPQFRKFTPTCDTNEIQTCTQQQLVNTYDNTILYVDY 429
Query: 174 AVEKIVKELKDLGELNNTYIIYTSDHGYHLGQFGLVKGKSFPFEF----DIRVPFLM 226
V+K + LK + NT ++Y SDHG LG+ G + P+ VP L+
Sbjct: 430 IVDKAINLLKQHQDKFNTSLVYLSDHGESLGENG-IYLHGLPYAIAPDQQTHVPMLL 485
>gnl|CDD|233976 TIGR02687, TIGR02687, TIGR02687 family protein. Members of this
family are uncharacterized proteins sporadically
distributed in bacteria and archaea, about 880 amino
acids in length. This protein is repeatedly found
upstream of another uncharacterized protein of about 470
amino acids in length, modeled by TIGR02688.
Length = 844
Score = 33.7 bits (77), Expect = 0.11
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 5/33 (15%)
Query: 174 AVEKIVKELKDL-----GELNNTYIIYTSDHGY 201
AVE+ + ELK L LN T II T+DHG+
Sbjct: 596 AVEETIVELKKLVKYLINRLNGTNIIVTADHGF 628
>gnl|CDD|241151 cd12707, RRM_LARP4, RNA recognition motif in vertebrate
La-related protein 4 (LARP4). This subgroup
corresponds to the RRM of LARP4, a cytoplasmic factor
that can bind poly(A) RNA and interact with poly(A)
binding protein (PABP). It may play a role in promoting
translation by stabilizing mRNA. LARP4 is structurally
related to the La autoantigen. Like other La-related
proteins (LARPs) family members, LARP4 contains a La
motif (LAM) and an RNA recognition motif (RRM), also
termed RBD (RNA binding domain) or RNP
(ribonucleoprotein domain). .
Length = 77
Score = 30.4 bits (68), Expect = 0.17
Identities = 12/35 (34%), Positives = 20/35 (57%)
Query: 64 HGEDYYNDYYPDLIANDSVRFLRQSKQSFSKKPIM 98
H ++Y + D A + R+LR+ ++F KPIM
Sbjct: 36 HNNNWYITFQSDTDAQQAFRYLREEVKTFQGKPIM 70
>gnl|CDD|225105 COG2194, COG2194, Predicted membrane-associated, metal-dependent
hydrolase [General function prediction only].
Length = 555
Score = 32.7 bits (75), Expect = 0.18
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Query: 167 TLQSVDDAVEKIVKELKDLGELNNTYIIYTSDHGYHLGQFGLVKG---KSFPFEFDIRVP 223
T+ D + K++ +LKD + NT +IY SDHG LG+ G + VP
Sbjct: 424 TILYTDYFLSKLIDQLKDKKD--NTSLIYFSDHGESLGENGPYLHGTPYEIAPQEQYHVP 481
Query: 224 FLM 226
F++
Sbjct: 482 FIV 484
>gnl|CDD|235203 PRK04024, PRK04024, cofactor-independent phosphoglycerate mutase;
Provisional.
Length = 412
Score = 31.4 bits (72), Expect = 0.52
Identities = 30/113 (26%), Positives = 46/113 (40%), Gaps = 42/113 (37%)
Query: 175 VEKIVKELKDLGELNNTYIIYTSDHGYHLGQFGLVKGKSFPFEFDIR------VPFLMRG 228
++K++ + D +L+ YI T DH S P E ++ VP L+ G
Sbjct: 323 IDKMLGYILDNLDLDEVYIAVTGDH-------------STPVE--VKDHSGDPVPILIYG 367
Query: 229 PGIVPGTMYLLDVLIPQVRKFS-----SGSL-----IFIMSFLINLNTMRAEK 271
PG+ D V KF+ G L + +M L++L RAEK
Sbjct: 368 PGVRV------D----DVEKFNELSAAKGGLGRIRGLDVMPILLDL-MNRAEK 409
>gnl|CDD|219960 pfam08665, PglZ, PglZ domain. This family is a member of the
Alkaline phosphatase clan.
Length = 176
Score = 29.2 bits (66), Expect = 1.7
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
Query: 158 DLLMTKRLQTLQSVDDAVEKIVKELKDL----GELNNTYIIYTSDHG 200
D + K+ T Q +AVE+ + ELKDL ++ T+DHG
Sbjct: 123 DAIGDKQS-TEQLSFEAVEESIGELKDLVRKLINRLGYNVVLTADHG 168
>gnl|CDD|224441 COG1524, COG1524, Uncharacterized proteins of the AP superfamily
[General function prediction only].
Length = 450
Score = 29.4 bits (66), Expect = 1.8
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 168 LQSVDDAVEKIVKELKDLGELNNTYIIYTSDHG 200
++ VD + ++++ LK G +I TSDHG
Sbjct: 246 VREVDSLLGELLELLKKRGLYEEYLVIITSDHG 278
>gnl|CDD|216643 pfam01676, Metalloenzyme, Metalloenzyme superfamily. This family
includes phosphopentomutase and
2,3-bisphosphoglycerate-independent phosphoglycerate
mutase. This family is also related to pfam00245. The
alignment contains the most conserved residues that are
probably involved in metal binding and catalysis.
Length = 423
Score = 29.2 bits (66), Expect = 2.3
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 174 AVEKIVKELKDLGELNNTYIIYTSDHG 200
AV+ + EL D E + +I T+DHG
Sbjct: 340 AVDARLGELLDALEKEDDLLIITADHG 366
>gnl|CDD|147574 pfam05462, Dicty_CAR, Slime mold cyclic AMP receptor. This family
consists of cyclic AMP receptor (CAR) proteins from
slime molds. CAR proteins are responsible for
controlling development in Dictyostelium discoideum.
Length = 305
Score = 29.0 bits (65), Expect = 2.4
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 5/38 (13%)
Query: 11 NLL--YFDISHGYFGKYLNKYNGSYIPPGWREWGALIM 46
N+L Y +SHG++ YN P WR +G+ I+
Sbjct: 236 NILHTYLSVSHGFYASVTFIYNN---PLMWRYFGSKIL 270
>gnl|CDD|237983 cd00016, alkPPc, Alkaline phosphatase homologues; alkaline
phosphatases are non-specific phosphomonoesterases that
catalyze the hydrolysis reaction via a phosphoseryl
intermediate to produce inorganic phosphate and the
corresponding alcohol, optimally at high pH. Alkaline
phosphatase exists as a dimer, each monomer binding 2
zinc atoms and one magnesium atom, which are essential
for enzymatic activity.
Length = 384
Score = 28.8 bits (65), Expect = 2.9
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 4/36 (11%)
Query: 172 DDAVEKIVKELKDLGELNNTYIIYTSDHGYHLGQFG 207
DDAVE + K + +T ++ T+DH H G
Sbjct: 280 DDAVEAALDFAK---KDGDTLVVVTADHS-HGGTIL 311
>gnl|CDD|183259 PRK11652, emrD, multidrug resistance protein D; Provisional.
Length = 394
Score = 28.3 bits (64), Expect = 4.2
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 234 GTMYLLDVLIPQVRKFSSGSLIFIMSFLINL 264
G LL ++PQ +FS G L+ +M LI L
Sbjct: 348 GLAALLSAMLPQTGQFSLGLLMTLMGLLILL 378
>gnl|CDD|225255 COG2380, COG2380, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 327
Score = 28.0 bits (62), Expect = 4.9
Identities = 11/65 (16%), Positives = 25/65 (38%), Gaps = 4/65 (6%)
Query: 107 HGPEDSAPQYANMFFNVTSHHTPAYDYAPNPDK---QWILQVTRKMQPVHRQFTDL-LMT 162
H +D+ ++ + P A + D Q ++ + + ++R D LM
Sbjct: 257 HAKDDNQIAAIQKIADLLAALLPKLGSADHKDPRAPQNLIPIAALEEALNRSLGDKELMN 316
Query: 163 KRLQT 167
+R+
Sbjct: 317 RRIFA 321
>gnl|CDD|220124 pfam09139, Mmp37, Mitochondrial matrix Mmp37. MMp37 is a
mitochondrial matrix protein that functions in the
translocation of proteins across the mitochondrial inner
membrane. It has been shown that MMP37 proteins possess
the NTase fold but they have only one active site
carboxylate and thus probably are not able to carry out
enzymatic reaction. These potentially non-active members
of NTase fold superfamily may bind ATP, hydrolysis of
which is necessary for the translocation of proteins
through the membrane.
Length = 324
Score = 28.0 bits (63), Expect = 5.0
Identities = 9/16 (56%), Positives = 13/16 (81%)
Query: 50 YYNYSINMNGRKIKHG 65
Y+N +N+NGR IK+G
Sbjct: 90 YFNPLVNINGRLIKYG 105
>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional.
Length = 493
Score = 28.3 bits (63), Expect = 5.3
Identities = 20/110 (18%), Positives = 41/110 (37%), Gaps = 13/110 (11%)
Query: 81 SVRFLRQSKQSFSKKPIMLVMSFPAPHGPEDSAPQYANMFFNVTSHHTPAYDYAPNPDKQ 140
S + S S S KP +S PA + N + H P D+
Sbjct: 392 SPELMGASALSPSGKPRHSGVSVPASTSAMTHSFDD-----NTSKHADPCAMGVKRMDEG 446
Query: 141 WILQVTRKMQP----VHRQFTDLLMTKRLQ-TLQSVDDAVEKIVKELKDL 185
+ + ++Q + Q ++ KR + LQ + V + +++++ +
Sbjct: 447 ILDERLGRLQALSEKLRTQHEEI---KRCREALQKKESIVMETLEKIQSI 493
>gnl|CDD|234651 PRK00125, pyrF, orotidine 5'-phosphate decarboxylase; Reviewed.
Length = 278
Score = 27.9 bits (63), Expect = 5.6
Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 8/41 (19%)
Query: 197 SDHGYHLGQFGLVKGKSFPFEF-DIR-----VPFLMRGPGI 231
+ G GLV G +FP E +R +P L+ PGI
Sbjct: 182 NLGNCGYGSIGLVVGATFPPELAAVRKILGGMPLLI--PGI 220
>gnl|CDD|220640 pfam10234, Cluap1, Clusterin-associated protein-1. This protein is
conserved from worms to humans. The protein of 413 amino
acids contains a central coiled-coil domain, possibly
the region that binds to clusterin. Cluap1 expression is
highest in the nucleus and gradually increases during
late S to G2/M phases of the cell cycle and returns to
the basal level in the G0/G1 phases. In addition, it is
upregulated in colon cancer tissues compared to
corresponding non-cancerous mucosa. It thus plays a
crucial role in the life of the cell.
Length = 269
Score = 27.7 bits (62), Expect = 6.0
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 13/54 (24%)
Query: 144 QVTRKMQPVHRQFTDLLMTKRLQTLQSVDDA----VEKIVKELKDLGELNNTYI 193
++ RK Q + R KRLQ LQSV A EK+ +EL+ +L TY
Sbjct: 200 KIERKKQELERT------QKRLQALQSVRPAFMEEYEKLEEELQ---KLYQTYF 244
>gnl|CDD|220292 pfam09563, RE_LlaJI, LlaJI restriction endonuclease. This family
includes the LlaJI (recognises GACGC) restriction
endonucleases.
Length = 368
Score = 27.7 bits (62), Expect = 6.9
Identities = 11/39 (28%), Positives = 16/39 (41%), Gaps = 5/39 (12%)
Query: 44 LIMNSKYYNYSINMNGRKIKHGED-----YYNDYYPDLI 77
I+++KYYNY + + D Y DLI
Sbjct: 275 YILDAKYYNYGFTDGLKGLPGVPDITKQILYGQALKDLI 313
>gnl|CDD|235463 PRK05434, PRK05434, phosphoglyceromutase; Provisional.
Length = 507
Score = 27.8 bits (63), Expect = 7.5
Identities = 9/30 (30%), Positives = 18/30 (60%), Gaps = 4/30 (13%)
Query: 171 VDDAVEKIVKELKDLGELNNTYIIYTSDHG 200
VD+ + ++V + ++ T +I T+DHG
Sbjct: 417 VDECLGRVVDAVL---KVGGTLLI-TADHG 442
>gnl|CDD|234746 PRK00394, PRK00394, transcription factor; Reviewed.
Length = 179
Score = 27.1 bits (61), Expect = 8.2
Identities = 9/16 (56%), Positives = 14/16 (87%)
Query: 174 AVEKIVKELKDLGELN 189
AVEKI+++L++LG L
Sbjct: 164 AVEKILEKLEELGLLE 179
>gnl|CDD|224402 COG1485, COG1485, Predicted ATPase [General function prediction
only].
Length = 367
Score = 27.3 bits (61), Expect = 9.6
Identities = 17/54 (31%), Positives = 21/54 (38%), Gaps = 10/54 (18%)
Query: 130 AYDYAPNPDKQWILQVTRKMQPVHRQFTDLLMTKRLQTLQSVDDAVEKIVKELK 183
Y+ P K+ L R M VH +RL TLQ D + I EL
Sbjct: 85 FYESLPGERKR-RLHFHRFMARVH---------QRLHTLQGQTDPLPPIADELA 128
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.139 0.431
Gapped
Lambda K H
0.267 0.0797 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 14,285,074
Number of extensions: 1369292
Number of successful extensions: 1564
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1555
Number of HSP's successfully gapped: 46
Length of query: 271
Length of database: 10,937,602
Length adjustment: 95
Effective length of query: 176
Effective length of database: 6,723,972
Effective search space: 1183419072
Effective search space used: 1183419072
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.0 bits)