RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5200
(271 letters)
>3b5q_A Putative sulfatase YIDJ; NP_810509.1, structural genomics, joint
center for structural genomics, JCSG; HET: EPE; 2.40A
{Bacteroides thetaiotaomicron vpi-5482}
Length = 482
Score = 129 bits (327), Expect = 7e-35
Identities = 37/243 (15%), Positives = 77/243 (31%), Gaps = 40/243 (16%)
Query: 20 GYFGKYLNKYNGSYIPPGWREWGALIMNSKYYNYSINMNGRKIKHGEDYYNDYYPDLIAN 79
+FGK + + G++ + + + +N + +
Sbjct: 114 VHFGKTHDMGS----LRGFKHK--EPVAKPFTDPEFPVNN----------DSFLDVGTCE 157
Query: 80 DSVRFLRQSKQSFSKKPIMLVMSFPAPHGPEDSAPQYANMF--------FNVTSHHTPAY 131
D+V +L K+P + + F PH + A + +
Sbjct: 158 DAVAYLSNPP----KEPFICIADFQNPHNICGFIGENAGVHTDRPISGPLPELPDNFDVE 213
Query: 132 DYAPNPDKQWILQVTRKMQPVHRQFTDLLMTKRLQ----TLQSVDDAVEKIVKELKDLGE 187
D++ P + + + + + + + V V+ ++K L
Sbjct: 214 DWSNIPTPVQYICCSHRRMTQAAHWNEENYRHYIAAFQHYTKMVSKQVDSVLKALYSTPA 273
Query: 188 LNNTYIIYTSDHGYHLGQFGLVKGKSFPFEFDIRVPFLMRGPGIVPG--------TMYLL 239
NT ++ +DHG + +V ++ VPF+ GPGI T L
Sbjct: 274 GRNTIVVIMADHGDGMASHRMVTKHISFYDEMTNVPFIFAGPGIKQQKKPVDHLLTQPTL 333
Query: 240 DVL 242
D+L
Sbjct: 334 DLL 336
>2qzu_A Putative sulfatase YIDJ; Q64XZ4_bacfr, arylsulfatase, BFR123, NESG,
structural genomics, PSI-2, protein structure
initiative; 1.70A {Bacteroides fragilis}
Length = 491
Score = 123 bits (311), Expect = 1e-32
Identities = 47/236 (19%), Positives = 89/236 (37%), Gaps = 22/236 (9%)
Query: 14 YFDISHGYFGKYLNKYNGSYIPPGWREWGALIMNSKYYNYSINMNGRKIKHGEDYYNDYY 73
Y D + N++ G+ W A Y+ + N + Y N +
Sbjct: 142 YVDTYNNRGKVAWNEWCPPERRHGFDHWIAY-GTYDYHLKPMYWNTTAPRDSFYYVNQWG 200
Query: 74 PDLIANDSVRFLRQSKQSFSKKPIMLVMSFPAPHGPEDSAPQ-YANMFFNVTSHHTPAYD 132
P+ A+ ++ ++ K K+P LV+S PH + P Y ++ ++ A
Sbjct: 201 PEYEASKAIEYINGQKDQ--KQPFALVVSMNPPHTGYELVPDRYKEIYKDLD---VEALC 255
Query: 133 YAPNPDKQWILQVTRKMQPVHRQFTDLLMTKRLQTLQSVDDAVEKIVKELKDLGELNNTY 192
++ + R + + VD+ V +I++ LK +NT
Sbjct: 256 KGRPDIPAKGTEMGDYFRNNIRNY--------YACITGVDENVGRIIEALKQNNLFDNTI 307
Query: 193 IIYTSDHGYHLGQFGLVKGKSFPFEFDIRVPFLMRGPG-IVPGT-----MYLLDVL 242
+++TSDHG +G GK +E +R+P ++ P I P + D+
Sbjct: 308 VVFTSDHGICMGAHENA-GKDIFYEESMRIPMILSWPDQIKPRKSDPLMIAFADLY 362
>2vqr_A Putative sulfatase; phosphonate monoester hydrolase, hydrolase,
plasmid, formylglycine, phosphodiesterase; 1.42A
{Rhizobium leguminosarum BV} PDB: 2w8s_A
Length = 543
Score = 109 bits (273), Expect = 3e-27
Identities = 38/234 (16%), Positives = 81/234 (34%), Gaps = 30/234 (12%)
Query: 13 LYFDISHGYFGKYLNKYNGSYIPPGWREWGALIMNSKYYNYSINMNGRKIKHGEDYYNDY 72
F+ + + ++ + NG +P + + + ++
Sbjct: 165 GAFEPNMEGYFGWVAQ-NGFDLPEHRPDI--------WLPEGEDAVAGATDRPSRIPKEF 215
Query: 73 YP-DLIANDSVRFLRQSKQSFSKKPIMLVMSFPAPHGPEDSAPQYANMFFNVT-----SH 126
++ +L+ KP L + + PH P ++ Y M+
Sbjct: 216 SDSTFFTERALTYLKGRDG----KPFFLHLGYYRPHPPFVASAPYHAMYRPEDMPAPIRA 271
Query: 127 HTPAYDYAPNP------DKQWILQVTRKMQPVHRQFTDLLMTKRLQ----TLQSVDDAVE 176
P + A +P D + + + + + + VDD +
Sbjct: 272 ANPDIEAAQHPLMKFYVDSIRRGSFFQGAEGSGATLDEAELRQMRATYCGLITEVDDCLG 331
Query: 177 KIVKELKDLGELNNTYIIYTSDHGYHLGQFGLVKGKSFPFEFDIRVPFLMRGPG 230
++ L + G+ ++T II+TSDHG LG L+ GK + R+P +++ G
Sbjct: 332 RVFSYLDETGQWDDTLIIFTSDHGEQLGDHHLL-GKIGYNDPSFRIPLVIKDAG 384
>3ed4_A Arylsulfatase; structural genomics, PSI-2, protein structure INI
NEW YORK structural genomix research consortium,
NYSGXRC, transferase; 1.70A {Escherichia coli}
Length = 502
Score = 99.3 bits (248), Expect = 8e-24
Identities = 44/232 (18%), Positives = 78/232 (33%), Gaps = 41/232 (17%)
Query: 15 FDISHGYFGKYLNKYNGSYIPPGWREWGALIMNSKYYNYSINMNGRKIKHGEDYYNDYYP 74
FD S G Y NG+ +
Sbjct: 149 FDYSLANTA-------GFVTDATLDNAKERPRYGMVYPTGWLRNGQPTPRADKMS----G 197
Query: 75 DLIANDSVRFLRQSKQSFSKKPIMLVMSFPAPHGPEDSAPQYANMFFNVTSHHTPAYDYA 134
+ ++++ V +L K KP L ++F H P S +Y +M+ S + +
Sbjct: 198 EYVSSEVVNWLDNKKD---SKPFFLYVAFTEVHSPLASPKKYLDMYSQYMSAYQKQHPDL 254
Query: 135 PNPDKQWILQVTRKMQPVHRQFTDLLMTKRLQTLQSVDDAVEKIVKELKDLGELNNTYII 194
D K ++ + +D V K++ ++K +GE +NT +I
Sbjct: 255 FYGDWA------DKPWRGVGEYYANIS--------YLDAQVGKVLDKIKAMGEEDNTIVI 300
Query: 195 YTSDHGYHLGQF-------------GLVKGKSFPFEFDIRVPFLMRGPGIVP 233
+TSD+G + GL K +E IRVP +++ +P
Sbjct: 301 FTSDNGPVTREARKVYELNLAGETDGLRGRKDNLWEGGIRVPAIIKYGKHLP 352
>1fsu_A N-acetylgalactosamine-4-sulfatase; glycosaminoglycan degradation,
hydrolase, glycopr lysosome; HET: ALS NAG; 2.50A {Homo
sapiens} SCOP: c.76.1.2
Length = 492
Score = 91.7 bits (228), Expect = 3e-21
Identities = 38/226 (16%), Positives = 68/226 (30%), Gaps = 55/226 (24%)
Query: 15 FDISHGYFG---KYLNKYNGSYIPPGWREWGALIMNSKYYNYSINMNGRKIKHGEDYYND 71
FD GY Y + + I AL +G ++ G N
Sbjct: 121 FDTYFGYLLGSEDYYSHERCTLIDALNVTRCALDF----------RDGEEVATGYK--NM 168
Query: 72 YYPDLIANDSVRFLRQSKQSFSKKPIMLVMSFPAPHGPEDSAPQYANMFFNVTSHHTPAY 131
Y ++ ++ + KP+ L ++ + H P +Y + + + Y
Sbjct: 169 YSTNIFTKRAIALITNHPPE---KPLFLYLALQSVHEPLQVPEEYLKPYDFIQDKNRHHY 225
Query: 132 DYAPNPDKQWILQVTRKMQPVHRQFTDLLMTKRLQTLQSVDDAVEKIVKELKDLGELNNT 191
M + +D+AV + LK G NNT
Sbjct: 226 ---------------AGM------------------VSLMDEAVGNVTAALKSSGLWNNT 252
Query: 192 YIIYTSDHGYHLGQFG----LVKGKSFPFEFDIRVPFLMRGPGIVP 233
I+++D+G G L K +E +R + P +
Sbjct: 253 VFIFSTDNGGQTLAGGNNWPLRGRKWSLWEGGVRGVGFVASPLLKQ 298
>1auk_A Arylsulfatase A; cerebroside-3-sulfate hydrolysis, lysosomal
enzyme, hydrolas; HET: NDG NAG; 2.10A {Homo sapiens}
SCOP: c.76.1.2 PDB: 1n2k_A* 1n2l_A* 1e1z_P* 1e2s_P*
1e3c_P* 1e33_P*
Length = 489
Score = 71.6 bits (176), Expect = 2e-14
Identities = 45/242 (18%), Positives = 71/242 (29%), Gaps = 59/242 (24%)
Query: 15 FDISHGYFGKYLNKY--NGSYIPPGWREWGALIMNSKYYNYSINMNGRKIKHGEDYYNDY 72
F G + N + PP G + + N
Sbjct: 123 FHRFLGIPYSHDQGPCQNLTCFPPATPCDGG--CDQGLVPIPLLANLSVEAQPPWL--PG 178
Query: 73 YPDLIANDSVRFLRQSKQSFSKKPIMLVMSFPAPHGPEDSAPQYANMFFNVTSHHTPAYD 132
+ + +++ +P L + H P+ S +A
Sbjct: 179 LEARYMAFAHDLMADAQRQ--DRPFFLYYASHHTHYPQFSGQSFAE-------------- 222
Query: 133 YAPNPDKQWILQVTRKMQPVHRQFTDLLMTKRLQTLQSVDDAVEKIVKELKDLGELNNTY 192
+ F D LM +D AV ++ + DLG L T
Sbjct: 223 -----------------RSGRGPFGDSLM--------ELDAAVGTLMTAIGDLGLLEETL 257
Query: 193 IIYTSDHGYHL---GQFG----LVKGKSFPFEFDIRVPFLMRGPG-IVPGT----MYLLD 240
+I+T+D+G + G L GK +E +R P L PG I PG LD
Sbjct: 258 VIFTADNGPETMRMSRGGCSGLLRCGKGTTYEGGVREPALAFWPGHIAPGVTHELASSLD 317
Query: 241 VL 242
+L
Sbjct: 318 LL 319
>1p49_A Steryl-sulfatase; steroid biosynthesis, steroid sulfatase, estrone
sulfate, dehydroepiandrosterone sulfate, human placental
enzyme; HET: ALS BOG NAG; 2.60A {Homo sapiens} SCOP:
c.76.1.2
Length = 562
Score = 66.7 bits (162), Expect = 1e-12
Identities = 35/251 (13%), Positives = 79/251 (31%), Gaps = 62/251 (24%)
Query: 3 WPVELTSRNLLYFDISHGYFGKYLNKYNGSYIPPGWREWGALIMNSKYYNYSINMNGRKI 62
+ ++ + L + + A ++ + + +
Sbjct: 162 KRLVFLPLQIVGVTLLTLAALNCLGLLHVPLGVFFSLLFLAALILTLFLGFLHYFRPLNC 221
Query: 63 KHGEDY-------YNDYYPDLIANDSVRFLRQSKQSFSKKPIMLVMSFPAPHGPEDSAPQ 115
+Y D + ++ +F++++ + P +LV+S+ H S+
Sbjct: 222 FMMRNYEIIQQPMSYDNLTQRLTVEAAQFIQRNTE----TPFLLVLSYLHVHTALFSSKD 277
Query: 116 YANMFFNVTSHHTPAYDYAPNPDKQWILQVTRKMQPVHRQFTDLLMTKRLQTLQSVDDAV 175
+A + Y ++ +D +V
Sbjct: 278 FAG--------KSQHGVYG-------------------------------DAVEEMDWSV 298
Query: 176 EKIVKELKDLGELNNTYIIYTSDHGYHLGQFGLVK------------GKSFPFEFDIRVP 223
+I+ L +L N+T I +TSD G H+ + GK+ +E IRVP
Sbjct: 299 GQILNLLDELRLANDTLIYFTSDQGAHVEEVSSKGEIHGGSNGIYKGGKANNWEGGIRVP 358
Query: 224 FLMRGPGIVPG 234
++R P ++
Sbjct: 359 GILRWPRVIQA 369
>1hdh_A Arylsulfatase; hydrolase, formylglycine hydrate; 1.3A {Pseudomonas
aeruginosa} SCOP: c.76.1.2
Length = 536
Score = 59.1 bits (143), Expect = 3e-10
Identities = 45/278 (16%), Positives = 85/278 (30%), Gaps = 69/278 (24%)
Query: 15 FDISHGYFGKYLNKYNGSYIPPGWREWGALIMNSKYYNYSINMNGRKIKHGEDYYNDYYP 74
F+ S N Y P + E I+ Y + R + + + Y
Sbjct: 129 FERSFSLLPGAANHY---GFEPPYDESTPRILKGTPALYVED--ERYLDTLPEGF--YSS 181
Query: 75 DLIANDSVRFLRQSKQSFSKKPIMLVMSFPAPHG----PEDSAPQYANMF---------- 120
D + +++L++ QS +P + F APH P + +Y +
Sbjct: 182 DAFGDKLLQYLKERDQS---RPFFAYLPFSAPHWPLQAPREIVEKYRGRYDAGPEALRQE 238
Query: 121 -FNVTSHHTPAYDYAPNPDKQWILQVTRKMQPVHRQFTDLLMTKRLQTLQSVDDAVEKIV 179
+ + ++ R + M ++ +D + ++V
Sbjct: 239 RLARLKELGLVEADVEAHPVLALTREWEALEDEERAKSARAMEVYAAMVERMDWNIGRVV 298
Query: 180 KELKDLGELNNTYIIYTSDHG-------------------------YHLGQFGLVK---- 210
L+ GEL+NT++++ SD+G L G
Sbjct: 299 DYLRRQGELDNTFVLFMSDNGAEGALLEAFPKFGPDLLGFLDRHYDNSLENIGRANSYVW 358
Query: 211 ---------------GKSFPFEFDIRVPFLMRGPGIVP 233
K+F + IRVP L+R P +
Sbjct: 359 YGPRWAQAATAPSRLYKAFTTQGGIRVPALVRYPRLSR 396
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 45.8 bits (108), Expect = 1e-05
Identities = 42/263 (15%), Positives = 79/263 (30%), Gaps = 91/263 (34%)
Query: 62 IKHG--EDYYNDYYPDLIANDSVRFLRQSKQSFSKK----------------PIMLV--- 100
+ HG E + L+ S Q ++ F+K P LV
Sbjct: 11 LSHGSLE------HVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKF 64
Query: 101 MSFPAPHGPEDSAPQYANMFFNVTSH-----------HTPAYDYAPNPD------KQWI- 142
+ + + Q+ + + H A D K+ I
Sbjct: 65 LGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIK 124
Query: 143 -----LQVTRKMQPVHRQFTDLLMTKRLQTLQSVDDAVEKI-------------VKELKD 184
+ ++ P ++ L ++V + ++ +EL+D
Sbjct: 125 NYITARIMAKR--PFDKKSNSAL-------FRAVGEGNAQLVAIFGGQGNTDDYFEELRD 175
Query: 185 LGELNNTY-------IIYTSDHGYHLGQFGLVKGKSFPFEFDIRVPFLMRGPGIVPGTMY 237
L + TY I ++++ L + L K F +I + +L P P Y
Sbjct: 176 LYQ---TYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNI-LEWL-ENPSNTPDKDY 230
Query: 238 LLDVLIPQVRKFSSGSLIFIMSF 260
LL + I S LI ++
Sbjct: 231 LLSIPI-------SCPLIGVIQL 246
Score = 41.6 bits (97), Expect = 2e-04
Identities = 35/165 (21%), Positives = 56/165 (33%), Gaps = 61/165 (36%)
Query: 24 KYLNKYNGSYIPPGWREWGALIMNSKYYN----------YSINMNGRKIK--HGEDYYND 71
Y+NK N S++P G + +L+ N N Y +N+ RK K G D
Sbjct: 351 DYVNKTN-SHLPAGKQVEISLV-NG-AKNLVVSGPPQSLYGLNLTLRKAKAPSGLD---- 403
Query: 72 YYPDLIANDSVRFLRQSKQSFSKKPIMLVMSF-P--AP-HGP----------EDSAPQYA 117
QS+ FS++ + F P +P H +D
Sbjct: 404 ---------------QSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKN-- 446
Query: 118 NMFFNVTSHHTPAYD---------YAPNPDKQWILQVTRKMQPVH 153
N+ FN P YD + + ++ + + R PV
Sbjct: 447 NVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRL--PVK 489
Score = 36.6 bits (84), Expect = 0.008
Identities = 41/277 (14%), Positives = 78/277 (28%), Gaps = 103/277 (37%)
Query: 66 EDY-------YNDYYP---DLIANDSVRFLRQSKQSFSKKP-------IMLVMSFPAPHG 108
+DY Y Y+ DLI + + + + I+ + P+
Sbjct: 167 DDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTP 226
Query: 109 PED---SAP---------QYANMFFNVTSHHTPAYDYAPNPDKQWILQVTRKMQPVHRQF 156
+D S P Q A+ + VT+ + P + ++ T H Q
Sbjct: 227 DKDYLLSIPISCPLIGVIQLAH--YVVTAK---LLGFTPGELRSYLKGAT-----GHSQ- 275
Query: 157 TDLLMTKRLQTLQSVDDAVEKIVKELKDL---G----------ELNNTYIIYTSDHG--- 200
L+ + S + + K + L G L + + + ++
Sbjct: 276 -GLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGV 334
Query: 201 --YHLGQFGLVKG--------------KSFPFEFDIRVP-------FLMRGPGIVPGTMY 237
L + P + + ++ GP P ++Y
Sbjct: 335 PSPMLS----ISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGP---PQSLY 387
Query: 238 LLDVLIPQVRK-------------FSSGSLIFIMSFL 261
L++ +RK FS L F FL
Sbjct: 388 GLNL---TLRKAKAPSGLDQSRIPFSERKLKFSNRFL 421
Score = 35.0 bits (80), Expect = 0.027
Identities = 33/195 (16%), Positives = 56/195 (28%), Gaps = 78/195 (40%)
Query: 136 NPDKQWILQVTRKMQPVHRQFTDLLMTKRLQTLQSVDDAVEKIVKELKDLGELNNTYII- 194
NP I K + + ++ + +++ D K K K++ E + +Y
Sbjct: 1668 NPVNLTIHFGGEKGKRIRENYSAM-------IFETIVDGKLKTEKIFKEINEHSTSYTFR 1720
Query: 195 ----------YTS---------------DHGY---------H-LGQFG-LV-KGKSFPFE 217
+T G H LG++ L E
Sbjct: 1721 SEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIE 1780
Query: 218 FD-IRVPFLMRG-------P------------GIVPGTMYL------LDVLIPQVRKFSS 251
+ V F RG P I PG + L ++ +V K +
Sbjct: 1781 -SLVEVVFY-RGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGK-RT 1837
Query: 252 GSLIFIMSFLINLNT 266
G L+ I +N N
Sbjct: 1838 GWLVEI----VNYNV 1848
>3lxq_A Uncharacterized protein VP1736; alkaline, phosphatase, MDOB,
sulfatase, PSI, MCSG, structural genomics; 1.95A {Vibrio
parahaemolyticus}
Length = 450
Score = 44.1 bits (104), Expect = 2e-05
Identities = 28/176 (15%), Positives = 55/176 (31%), Gaps = 38/176 (21%)
Query: 61 KIKHGEDYYNDYYPDLIANDSVRFLRQSKQSFSKKPIMLVMSFPAPHGPEDSAPQYANMF 120
+I ++Y N + ++ + F + + P ++ +
Sbjct: 200 QIVEEKNYTNPGFVGSWGVSDEDLYNKADEEFERLS-------------KGDKPFFS-LV 245
Query: 121 FNVTSHHTPAYDYAPNPDKQWILQVTRKMQPVHRQFTDLLMTKRLQTLQSVDDAVEKIVK 180
F ++H Y+Y P+ + D R ++ D A+
Sbjct: 246 FTSSNHSP--YEY---PEG-------------KIEQYDSEHMTRNNAVKYSDYALGTFFD 287
Query: 181 ELKDLGELNNTYIIYTSDHGYHLGQFGLVKGKSFPFEFDIRVPFLMRGPGIVPGTM 236
+ K ++T I +DH + LV K F +P L+ G I P
Sbjct: 288 KAKKSSYWDDTIFIVIADHDARVFGANLVPVKHF------HIPALIIGKDIQPRKD 337
>2w8d_A Processed glycerol phosphate lipoteichoic acid SY; transferase,
phosphatase, cell membrane, transmembrane, LTA,
membrane, secreted, cell WALL; HET: TPO PG4; 2.35A
{Bacillus subtilis}
Length = 436
Score = 42.5 bits (100), Expect = 8e-05
Identities = 25/131 (19%), Positives = 44/131 (33%), Gaps = 22/131 (16%)
Query: 114 PQYANMFFNVTSHHTPAYDYAPNPDKQWILQVTRKMQPVHRQFTDLLMTKRLQTLQSVDD 173
P Y F +++H D F D ++ Q+ +D
Sbjct: 188 PFYT-KFITLSNHFPFGMDEGDTDFPA-------------GDFGDSVVDNYFQSAHYLDQ 233
Query: 174 AVEKIVKELKDLGELNNTYIIYTSDHG----YHLGQFGLVKGKSFPFEFDI----RVPFL 225
++E+ +LK G + + I+ DH H V GK ++D RVP
Sbjct: 234 SIEQFFNDLKKDGLYDKSIIVMYGDHYGISENHNKAMAKVLGKDEITDYDNAQLQRVPLF 293
Query: 226 MRGPGIVPGTM 236
+ G+ +
Sbjct: 294 IHAAGVKGEKV 304
>2w5q_A Processed glycerol phosphate lipoteichoic acid synthase;
transmembrane, cell WALL biogenesis/degradation, LTAS,
membrane, secreted; 1.20A {Staphylococcus aureus} PDB:
2w5s_A* 2w5t_A* 2w5r_A*
Length = 424
Score = 40.3 bits (94), Expect = 5e-04
Identities = 20/86 (23%), Positives = 36/86 (41%), Gaps = 7/86 (8%)
Query: 158 DLLMTKRLQTLQSVDDAVEKIVKELKDLGELNNTYIIYTSDHG-------YHLGQFGLVK 210
D + +QT + +D+A+E+ + +LK G +N+ I+ DH + + K
Sbjct: 218 DATVDGYIQTARYLDEALEEYINDLKKKGLYDNSVIMIYGDHYGISENHNNAMEKLLGEK 277
Query: 211 GKSFPFEFDIRVPFLMRGPGIVPGTM 236
F R F ++ PG G
Sbjct: 278 ITPAKFTDLNRTGFWIKIPGKSGGIN 303
>2gso_A Phosphodiesterase-nucleotide pyrophosphatase; alpha beta, NPP,
hydrolase; 1.30A {Xanthomonas axonopodis PV} PDB: 2gsn_A
2gsu_A* 2rh6_A*
Length = 393
Score = 38.2 bits (88), Expect = 0.002
Identities = 11/37 (29%), Positives = 20/37 (54%)
Query: 166 QTLQSVDDAVEKIVKELKDLGELNNTYIIYTSDHGYH 202
+++VD A+ +++ ++ G T II SDHG
Sbjct: 186 DAVRAVDAAIGRLLAGMQRDGTRARTNIIVVSDHGMA 222
>3nkq_A Ectonucleotide pyrophosphatase/phosphodiesterase member 2;
lysophospholipase D, autotaxin, ENPP2, lysophosphatidic
acid hydrolase; HET: NAG BMA MAN NKQ; 1.70A {Mus
musculus} PDB: 3nkm_A* 3nkn_A* 3nkp_A* 3nko_A* 3nkr_A*
2xrg_A* 2xr9_A*
Length = 831
Score = 37.6 bits (86), Expect = 0.004
Identities = 10/41 (24%), Positives = 18/41 (43%)
Query: 162 TKRLQTLQSVDDAVEKIVKELKDLGELNNTYIIYTSDHGYH 202
+ L+ +D V +++ LK L +I+ DHG
Sbjct: 287 PEMTNPLREIDKTVGQLMDGLKQLKLHRCVNVIFVGDHGME 327
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 35.7 bits (81), Expect = 0.005
Identities = 12/36 (33%), Positives = 14/36 (38%), Gaps = 9/36 (25%)
Query: 89 KQSFSKKPIMLVMSFPAPHGPEDSAPQYANMFFNVT 124
KQ+ KK L S + DSAP A T
Sbjct: 19 KQAL-KK---LQASL-KLYAD-DSAPALA---IKAT 45
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 37.1 bits (85), Expect = 0.006
Identities = 44/293 (15%), Positives = 74/293 (25%), Gaps = 72/293 (24%)
Query: 13 LYFDISHGYFGKYLNKYNG--------------SYIPPGWREWGALIMNSKYYNYS--IN 56
L D KYL+ S I R+ A N K+ N
Sbjct: 298 LTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTT 357
Query: 57 MNGRKIKH-GEDYYNDYYPDL-IANDSVRFLRQSKQSFSKKPIMLVMSF---PAPHGPED 111
+ + Y + L + S P +L+
Sbjct: 358 IIESSLNVLEPAEYRKMFDRLSVFPPSA-----------HIPTILLSLIWFDVIKSDVMV 406
Query: 112 SAPQYANMFFNVTSHHTPAYDYAPNPDKQWILQVT-RKMQPVHRQFTDLLMTKRLQTLQS 170
+ P L+V +HR D ++
Sbjct: 407 VVNKLHKYSLVEKQPKESTISI---PSIYLELKVKLENEYALHRSIVD-----HYNIPKT 458
Query: 171 VDDAVEKIVKELKDLGELNNTYIIYTSDH-GYHLGQFGLV-KGKSFPFEF-DIRVPFL-- 225
D + ++ D Y Y+ H G+HL + F F D R FL
Sbjct: 459 FDS--DDLIPPYLD------QYF-YS--HIGHHLKNIEHPERMTLFRMVFLDFR--FLEQ 505
Query: 226 -MRGPGI-VPGTMYLLDVLIPQVRKFS----------SGSLIFIMSFLINLNT 266
+R + +L+ L Q++ + + I+ FL +
Sbjct: 506 KIRHDSTAWNASGSILNTLQ-QLKFYKPYICDNDPKYERLVNAILDFLPKIEE 557
Score = 31.7 bits (71), Expect = 0.31
Identities = 27/173 (15%), Positives = 51/173 (29%), Gaps = 66/173 (38%)
Query: 3 WPVELTSR-NLLYFDIS---------HGYFGKYLNKYNGSYIPPGWREWG-ALIMNSKY- 50
P E T +Y ++ H ++ YN IP + +Y
Sbjct: 420 QPKESTISIPSIYLELKVKLENEYALHR---SIVDHYN---IPKTFDSDDLIPPYLDQYF 473
Query: 51 YNY------SINMNGR----------------KIKHGE----------------DYYNDY 72
Y++ +I R KI+H +Y Y
Sbjct: 474 YSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPY 533
Query: 73 ------YPDLIANDSVRFLRQSKQSF--SKKPIMLVMSFPAPHGP--EDSAPQ 115
+ + N + FL + +++ SK +L ++ A E++ Q
Sbjct: 534 ICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQ 586
>2c41_A DPS family DNA-binding stress response protein;
iron-binding/oxidation protein, DPS (DNA-binding
proteins from starved cells); HET: PG4 PGE; 1.81A
{Thermosynechococcus elongatus}
Length = 158
Score = 29.2 bits (66), Expect = 0.91
Identities = 10/43 (23%), Positives = 16/43 (37%), Gaps = 6/43 (13%)
Query: 172 DDAVEKIVKELKDLGELNNTYIIYTSDHGYHLGQFGLVKGKSF 214
E+++ LK N ++Y + YH L G F
Sbjct: 5 TTLKEQVLTTLKRE--QANAVVMYLNYKKYHW----LTYGPLF 41
>2zkt_A 2,3-bisphosphoglycerate-independent phosphoglycer mutase;
phosphonopyruvate decarboxylase, isomerase, structural
genom NPPSFA; 2.40A {Pyrococcus horikoshii}
Length = 412
Score = 29.2 bits (65), Expect = 1.5
Identities = 29/169 (17%), Positives = 51/169 (30%), Gaps = 33/169 (19%)
Query: 116 YANMFFNVTSHHTPAYDYAPNPDKQWILQVTRKMQPV--HRQFTDLL-----MTKRLQTL 168
T Y+ + +++ + V H + TD + + +
Sbjct: 261 AVGFDVYTPEGATGEYNTNEMAKAKKAVELLKDYDFVFLHFKPTDAAGHDNKPKLKAELI 320
Query: 169 QSVDDAVEKIVKELKDLGELNNTYIIYTSDHGYHLGQFGLVKGKSF-PFEFDIRVPFLMR 227
+ D + I+ + L I T DH V S P VP L+
Sbjct: 321 ERADRMIGYILDHVD----LEEVVIAITGDHSTPCE----VMNHSGDP------VPLLIA 366
Query: 228 GPGIVPGTMYLLDVLIPQVRKFSSGSLIF-----IMSFLINLNTMRAEK 271
G G+ R+ G L I+ +++L R+EK
Sbjct: 367 GGGVRTDDTKRFG-----EREAMKGGLGRIRGHDIVPIMMDL-MNRSEK 409
>3iq1_A DPS family protein; csgid, SAD, niaid, metal transport, STRU
genomics, center for structural genomics of infectious
DISE; 1.67A {Vibrio cholerae o1 biovar el tor}
Length = 159
Score = 28.1 bits (63), Expect = 1.9
Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 6/43 (13%)
Query: 172 DDAVEKIVKELKDLGELNNTYIIYTSDHGYHLGQFGLVKGKSF 214
+K+ L +L L N + Y + GYH ++GK F
Sbjct: 13 TTQSQKLANALNNL--LANYQVFYMNTRGYHW----NIQGKEF 49
>3kd8_A 2,3-bisphosphoglycerate-independent phosphoglycerate mutase;
structural genomics, PSI-2, protein genomics, MCSG,
glycolysis isomerase; 2.60A {Thermoplasma acidophilum}
PDB: 3idd_A
Length = 399
Score = 29.0 bits (64), Expect = 2.0
Identities = 20/100 (20%), Positives = 34/100 (34%), Gaps = 30/100 (30%)
Query: 174 AVEKIVKELKDLGELNNTYIIYTSDHGYHLGQFGLVKGKSFPFEFDIRVPFLMRGPGIVP 233
+++ ++ LK +G+ + I T DH K + VP + G++
Sbjct: 319 DIDRAMEPLKSIGD--HAVICVTGDHSTP------CSFKDHSGD---PVPIVFYTDGVMN 367
Query: 234 GTMYLLDVLIPQVRKFS-----SGSLIF----IMSFLINL 264
V F SGSL +M L+ L
Sbjct: 368 DG----------VHLFDELSSASGSLRITSYNVMDILMQL 397
>1k7h_A Alkaline phosphatase; hydrolase, transferase, phosphomonoester,
extended beta SHEE triad, metal triad; HET: NAG; 1.92A
{Pandalus borealis} SCOP: c.76.1.1 PDB: 1shq_A* 1shn_A*
Length = 476
Score = 28.6 bits (64), Expect = 2.2
Identities = 9/36 (25%), Positives = 15/36 (41%), Gaps = 5/36 (13%)
Query: 172 DDAVEKIVKELKDLGELNNTYIIYTSDHGYHLGQFG 207
++AV + + T I+ T+DHG H
Sbjct: 334 EEAVSM----ALSMTDPEETIILVTADHG-HTLTIT 364
>2fjc_A Antigen TPF1; mini ferritin, iron binding protein, metal transport;
2.50A {Treponema pallidum} SCOP: a.25.1.1
Length = 156
Score = 28.1 bits (63), Expect = 2.2
Identities = 7/31 (22%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Query: 172 DDAVEKIVKELKDLGELNNTYIIYTSDHGYH 202
A+ I ++L+ + + ++Y H YH
Sbjct: 8 ARAIAAICEQLRQH--VADLGVLYIKLHNYH 36
>2pyb_A NAPA, neutrophil activating protein; ferritin, DPS, four-helix
bundle, metal transport; 2.60A {Borrelia burgdorferi}
Length = 151
Score = 27.7 bits (62), Expect = 2.7
Identities = 9/30 (30%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 173 DAVEKIVKELKDLGELNNTYIIYTSDHGYH 202
D ++ I +L++L L + +I Y++ G H
Sbjct: 1 DDLDAIQLKLQEL--LASLHIFYSNLRGIH 28
>2w0y_A APH, alkaline phosphatase; hydrolase, halophilic; 1.7A
{Halobacterium salinarum R1} PDB: 2x98_A
Length = 473
Score = 28.2 bits (63), Expect = 2.9
Identities = 5/29 (17%), Positives = 12/29 (41%), Gaps = 2/29 (6%)
Query: 172 DDAVEKIVKELKDLGELNNTYIIYTSDHG 200
++V+ + T+++ T DH
Sbjct: 322 TQVAGQLVEYAETTA--EPTFLVSTGDHE 348
>3igz_B Cofactor-independent phosphoglycerate mutase; glycolysis, cobalt,
isomerase; HET: 3PG 2PG; 1.90A {Leishmania mexicana}
PDB: 3igy_B* 3nvl_A
Length = 561
Score = 28.3 bits (64), Expect = 2.9
Identities = 10/30 (33%), Positives = 18/30 (60%), Gaps = 4/30 (13%)
Query: 171 VDDAVEKIVKELKDLGELNNTYIIYTSDHG 200
VD+++ K+ + +N YI+ T+DHG
Sbjct: 443 VDESLAKLKDAVD---SVNGVYIV-TADHG 468
>1zed_A Alkaline phosphatase; phosphoserine, substrate analog, hydro; HET:
NAG PNP; 1.57A {Homo sapiens} SCOP: c.76.1.1 PDB:
1zeb_A* 1zef_A* 2glq_A* 3mk0_A* 3mk1_A* 3mk2_A* 1ew2_A*
Length = 484
Score = 28.2 bits (63), Expect = 2.9
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 5/36 (13%)
Query: 172 DDAVEKIVKELKDLGELNNTYIIYTSDHGYHLGQFG 207
DDA+E+ L +T + T+DH H+ FG
Sbjct: 335 DDAIERA----GQLTSEEDTLSLVTADHS-HVFSFG 365
>2vxx_A Starvation induced DNA binding protein; stress response protein,
DPS, oxidation, iron binding, ferroxidase centre; HET:
PG4; 2.40A {Synechococcus elongatus}
Length = 192
Score = 27.8 bits (62), Expect = 3.2
Identities = 8/43 (18%), Positives = 15/43 (34%), Gaps = 6/43 (13%)
Query: 172 DDAVEKIVKELKDLGELNNTYIIYTSDHGYHLGQFGLVKGKSF 214
I + + L L + +Y +H +V+G F
Sbjct: 23 KATTTPICEGMNRL--LASFQALYLQYQKHHF----VVEGAEF 59
>3e2d_A Alkaline phosphatase; cold-adaptation, metalloenzyme, dimer,
psychrophilic bacteria, crystallography, hydrolase;
1.40A {Vibrio SP}
Length = 502
Score = 27.9 bits (62), Expect = 3.5
Identities = 9/29 (31%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
Query: 172 DDAVEKIVKELKDLGELNNTYIIYTSDHG 200
D+A++ + + KD + T +I T+DH
Sbjct: 292 DEAIQTVYEWAKDRED---TIVIVTADHE 317
>4eve_A Neutrophil-activating protein; dodecamer, four-helix bundle, metal
transport; 2.10A {Helicobacter pylori} PDB: 4evd_A
3t9j_A 3ta8_A 4evb_A 4evc_A 1ji4_A
Length = 164
Score = 27.4 bits (61), Expect = 3.5
Identities = 6/31 (19%), Positives = 13/31 (41%), Gaps = 2/31 (6%)
Query: 172 DDAVEKIVKELKDLGELNNTYIIYTSDHGYH 202
+ K + LK L + +++ H +H
Sbjct: 17 RGSHMKTFEILKHL--QADAIVLFMKVHNFH 45
>1n1q_A DPS protein; four-helix bundle, unknown function; 2.20A
{Brevibacillus brevis} SCOP: a.25.1.1
Length = 149
Score = 27.3 bits (61), Expect = 3.7
Identities = 5/31 (16%), Positives = 11/31 (35%), Gaps = 2/31 (6%)
Query: 172 DDAVEKIVKELKDLGELNNTYIIYTSDHGYH 202
+ + L + N ++Y H +H
Sbjct: 3 TSIQQLVAVLLNRQ--VANWVVLYVKLHNFH 31
>2wlu_A DPS-like peroxide resistance protein; DNA-binding, oxidoreductase;
1.94A {Streptococcus pyogenes} PDB: 2wla_A
Length = 175
Score = 27.4 bits (61), Expect = 4.3
Identities = 5/31 (16%), Positives = 9/31 (29%), Gaps = 2/31 (6%)
Query: 172 DDAVEKIVKELKDLGELNNTYIIYTSDHGYH 202
EK L + + + + H H
Sbjct: 22 ASKNEKTKAVLNQA--VADLSVAASIVHQVH 50
>2xgw_A Peroxide resistance protein; metal binding protein; 2.10A
{Streptococcus pyogenes}
Length = 199
Score = 27.4 bits (61), Expect = 4.5
Identities = 5/31 (16%), Positives = 9/31 (29%), Gaps = 2/31 (6%)
Query: 172 DDAVEKIVKELKDLGELNNTYIIYTSDHGYH 202
EK L + + + + H H
Sbjct: 38 ASKNEKTKAVLNQA--VADLSVAASIVHQVH 66
>3fnd_A Chitinase; TIM-barrel, structural genomics, PSI-2, P structure
initiative, NEW YORK SGX research center for STRU
genomics, nysgxrc; 1.90A {Bacteroides thetaiotaomicron}
PDB: 3co4_A
Length = 312
Score = 27.7 bits (62), Expect = 4.6
Identities = 11/85 (12%), Positives = 23/85 (27%), Gaps = 14/85 (16%)
Query: 73 YPDLIANDSVRFLRQSKQSFSKKPIMLVMSFPAPHGPEDSAPQYANM--FFNV------- 123
D + L ++ + K ++M+ + ++ + N+
Sbjct: 115 EYDNWDKNFPSLLVFARGLYLAKEKNMLMTCAVNSRWLNYGTEWEQYFDYINLMSYDRGA 174
Query: 124 ----TSHHTPAYDYAPNPDKQWILQ 144
H YD K W Q
Sbjct: 175 FTDKPVQHAS-YDDFVKDLKYWNEQ 198
>1o98_A 2,3-bisphosphoglycerate-independent phosphoglycerate mutase;
isomerase, alpha/beta-type structure; HET: 2PG; 1.4A
{Bacillus stearothermophilus} SCOP: c.105.1.1 c.76.1.3
PDB: 1ejj_A* 1eqj_A* 1o99_A* 2ify_A
Length = 511
Score = 27.5 bits (62), Expect = 4.9
Identities = 10/30 (33%), Positives = 15/30 (50%), Gaps = 4/30 (13%)
Query: 171 VDDAVEKIVKELKDLGELNNTYIIYTSDHG 200
VD+ + K+V + II T+DHG
Sbjct: 421 VDECLGKVVDAIL---AKGGIAII-TADHG 446
>2qjv_A Uncharacterized IOLB-like protein; structural genomics, joint
center for structural genomics, J protein structure
initiative, PSI-2; HET: MLY MSE; 1.90A {Salmonella
typhimurium LT2}
Length = 270
Score = 27.2 bits (60), Expect = 4.9
Identities = 9/45 (20%), Positives = 17/45 (37%)
Query: 100 VMSFPAPHGPEDSAPQYANMFFNVTSHHTPAYDYAPNPDKQWILQ 144
V+ P + P + Y N + NV + + + + WI
Sbjct: 221 VVXVPXGYHPVATIAGYDNYYLNVMAGPLRXWRFTWEENHAWINS 265
>2z8f_A Galacto-N-biose/lacto-N-biose I transporter subst binding protein;
ABC transporter, mucin core-1, human MILK
oligosacchalide; HET: BGC GAL NAG MES; 1.65A
{Bifidobacterium longum} PDB: 2z8e_A* 2z8d_A*
Length = 412
Score = 27.4 bits (61), Expect = 5.2
Identities = 13/86 (15%), Positives = 23/86 (26%), Gaps = 4/86 (4%)
Query: 103 FPAPHGPEDSAPQYANMFFNVTSHHTPAYDYAPN-PDKQWILQVTRKMQPVHRQFTDLLM 161
PA + P + FF N D ++ + ++
Sbjct: 324 VPAATTEDAETPSEWSTFFGGQDIMKEFKTANNNMGDFTYMPGFSAVAAKMNETAAKATD 383
Query: 162 TKRLQTLQSV-DDAVEKIVKELKDLG 186
+ + DA V LK+ G
Sbjct: 384 GS--GKVADIFSDAQTTSVDTLKNFG 407
>3a52_A Cold-active alkaline phosphatase; hydrolase; 2.20A {Shewanella}
Length = 400
Score = 27.3 bits (61), Expect = 5.3
Identities = 6/29 (20%), Positives = 16/29 (55%), Gaps = 3/29 (10%)
Query: 172 DDAVEKIVKELKDLGELNNTYIIYTSDHG 200
+A+E + + ++ + T ++ T+DH
Sbjct: 246 ANAIEVVEQYIRQHPD---TLLVVTADHN 271
>3tg0_A Apase, alkaline phosphatase; hydrolase; 1.20A {Escherichia coli}
PDB: 1b8j_A 1ed9_A 1ew8_A 1ew9_A 1ed8_A 1y6v_A 3bdg_B
1elx_A 2g9y_A 2ga3_A* 3bdh_A 3cmr_A 1elz_A 1hjk_A*
1hqa_A 1ely_A 3dyc_A 1ali_A 1alj_A 3bdf_A ...
Length = 449
Score = 27.5 bits (61), Expect = 5.7
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 4/36 (11%)
Query: 172 DDAVEKIVKELKDLGELNNTYIIYTSDHGYHLGQFG 207
D+AV++ ++ K G T +I T+DH H Q
Sbjct: 346 DEAVQRALEFAKKEGN---TLVIVTADHA-HASQIV 377
>2cf7_A DPR; peroxide resistance, DPS-family, ferritin-like, ferroxidase,
iron-binding; HET: EPE; 1.50A {Streptococcus suis} PDB:
2ux1_A* 2bw1_A* 1umn_A* 2v15_A* 2xjm_A* 2xjn_A* 2xjo_A*
2xkq_A*
Length = 165
Score = 26.6 bits (59), Expect = 6.0
Identities = 3/31 (9%), Positives = 10/31 (32%), Gaps = 2/31 (6%)
Query: 172 DDAVEKIVKELKDLGELNNTYIIYTSDHGYH 202
++ L + + + ++ H H
Sbjct: 12 RPSLADSKAVLNQA--VADLSVAHSILHQVH 40
>2d5k_A DPS, DPS family protein; four helix bundle, metal binding protein;
1.85A {Staphylococcus aureus subsp}
Length = 156
Score = 26.5 bits (59), Expect = 6.2
Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
Query: 173 DAVEKIVKELKDLGELNNTYIIYTSDHGYH 202
+ +VKEL + N + YT H +H
Sbjct: 3 SNQQDVVKELNQQ--VANWTVAYTKLHNFH 30
>3q3q_A Alkaline phosphatase; hydrolase; 1.95A {Sphingomonas SP}
Length = 565
Score = 27.4 bits (59), Expect = 6.7
Identities = 7/22 (31%), Positives = 10/22 (45%)
Query: 214 FPFEFDIRVPFLMRGPGIVPGT 235
P++ D RVP L G+
Sbjct: 493 SPWDTDRRVPILFWRKGMQHFE 514
>2chp_A MRGA, metalloregulation DNA-binding stress protein; DNA-binding
protein, DPS, dodecameric, ferritin; 2.0A {Bacillus
subtilis}
Length = 153
Score = 26.5 bits (59), Expect = 7.3
Identities = 6/31 (19%), Positives = 13/31 (41%), Gaps = 2/31 (6%)
Query: 172 DDAVEKIVKELKDLGELNNTYIIYTSDHGYH 202
+ L L+N +++Y+ H +H
Sbjct: 7 KTNQTLVENSLNTQ--LSNWFLLYSKLHRFH 35
>1hdf_A Spherulin 3A; structural protein, crystallins, eye lens, domain
interactions, tyrosine corner; 2.35A {Physarum
polycephalum} SCOP: b.11.1.1 PDB: 1ag4_A
Length = 102
Score = 25.6 bits (56), Expect = 8.0
Identities = 6/35 (17%), Positives = 11/35 (31%)
Query: 56 NMNGRKIKHGEDYYNDYYPDLIANDSVRFLRQSKQ 90
NG I+ E ND++ + +
Sbjct: 65 RFNGNFIRLEESSQVTDLTTRNLNDAISSMIVATF 99
>1pea_A Amidase operon; gene regulator, receptor, binding protein; 2.10A
{Pseudomonas aeruginosa} SCOP: c.93.1.1 PDB: 1qo0_A
1qnl_A
Length = 385
Score = 26.9 bits (60), Expect = 8.7
Identities = 10/98 (10%), Positives = 23/98 (23%), Gaps = 33/98 (33%)
Query: 18 SHGYFGKYLNKYNGS-----YIP--PGWREWGALIMNSKYYNYSINMNGRKIKHGEDYYN 70
S+ ++ G+ YIP P + + +I
Sbjct: 156 SNHVMRHLYRQHGGTVLEEIYIPLYPSDDDLQRAV--------------ERIYQAR---- 197
Query: 71 DYYPD-----LIANDSVRFLRQSKQSFSKKPIMLVMSF 103
D ++ + R + + + S
Sbjct: 198 ---ADVVFSTVVGTGTAELYRAIARRYGDGRRPPIASL 232
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.139 0.431
Gapped
Lambda K H
0.267 0.0686 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,317,771
Number of extensions: 256922
Number of successful extensions: 730
Number of sequences better than 10.0: 1
Number of HSP's gapped: 706
Number of HSP's successfully gapped: 61
Length of query: 271
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 179
Effective length of database: 4,133,061
Effective search space: 739817919
Effective search space used: 739817919
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.4 bits)