RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5200
(271 letters)
>d1o98a2 c.76.1.3 (A:2-76,A:311-510)
2,3-Bisphosphoglycerate-independent phosphoglycerate
mutase, catalytic domain {Bacillus stearothermophilus
[TaxId: 1422]}
Length = 275
Score = 35.0 bits (79), Expect = 0.006
Identities = 23/223 (10%), Positives = 42/223 (18%), Gaps = 16/223 (7%)
Query: 21 YFGKYLNKYNGSYIPPGWREWGALIMNSKYYNYSINMNGRKIKHGEDYYNDYYPDLIAND 80
G+ + G Y N + +HG + +
Sbjct: 46 ACGEAVGLPEGQMGNSEVGHLNIGAGRIVYTNLDNTIGEVLSQHGLRQLRIAETEKYPHV 105
Query: 81 SVRFLRQSKQSFSKKPIMLVMSFPAPHGPEDSAPQYANMFFNVTSHHTPAYDYAPNPDKQ 140
+ ++ + M + A D
Sbjct: 106 TFFM-----SGGREEEFPGEDRILINSPKVPTYDLKPEMSAYEVTDALLKEIEADKYDAI 160
Query: 141 WILQVTRKMQPVHRQFTDLLMTKRLQTLQSVDDAVEKIVKELKDLGELNNTYIIYTSDHG 200
+ M + + I T+DHG
Sbjct: 161 ILNYANPDMVGHSGKLEPTIKAVEAVDECLGKVVDA---------ILAKGGIAIITADHG 211
Query: 201 YHLGQFGLVKGKSFPFEFDIRVPFLMRGPGI-VPGTMYLLDVL 242
GK VP ++ GI + L D+
Sbjct: 212 NADEVLTP-DGKPQTAHTTNPVPVIVTKKGIKLRDGGILGDLA 253
>d2i09a1 c.76.1.5 (A:2-107,A:227-403) Phosphopentomutase DeoB
{Streptococcus mutans [TaxId: 1309]}
Length = 283
Score = 32.6 bits (73), Expect = 0.037
Identities = 23/216 (10%), Positives = 38/216 (17%), Gaps = 43/216 (19%)
Query: 20 GYFGKYLNKYNGSYIPPGWREWGALIMNSKYYNYSINMNGRKIKHGEDYYNDYYPDLIAN 79
GY K G G E L + +N Y D+
Sbjct: 77 GYVTKLEEVSLGKDTMTGHWEIMGLNITEPSPFAPTVLNKLADAGVSTYAVGKINDIFNG 136
Query: 80 DSVRFLRQSKQSFSKKPIMLVMSFPAPHGPEDSAPQYANMFFNVTSHHTPAYDYAPNPDK 139
+ +S + ++ + F+ H
Sbjct: 137 SGITNDMGHNKSN-SHGVDTLIKTMGLSAFTKGFSFTNLVDFDALYGHRRNAHGY----- 190
Query: 140 QWILQVTRKMQPVHRQFTDLLMTKRLQTLQSVDDAVEKIVKELKDLGELNNTYIIYTSDH 199
L D+ + +I+ +K L T
Sbjct: 191 -------------------------RDCLHEFDERLPEIIAAMKVDDLLLITADHGNDPT 225
Query: 200 GYHLGQFGLVKGKSFPFEFDIRVPFLMRGPGIVPGT 235
VP L P
Sbjct: 226 YAGTDHTR------------EYVPLLAYSPSFTGNG 249
>d1ei6a_ c.76.1.4 (A:) Phosphonoacetate hydrolase {Pseudomonas
fluorescens [TaxId: 294]}
Length = 406
Score = 29.5 bits (64), Expect = 0.42
Identities = 15/230 (6%), Positives = 45/230 (19%), Gaps = 12/230 (5%)
Query: 14 YFDISHGYFGKYLNKYNGSYIPPGWREWGALIMNSKYYNYSINMNGRKIKHGEDYYNDYY 73
+ G + + + G ++ ++ ++ ++H
Sbjct: 155 GVENILARVGMPVPSVYSADLSEFVFAAGLSLLTNERPDFMYLSTTDYVQHKHAPGTPEA 214
Query: 74 PDLIANDSVRFLRQSKQSFSKKPIMLVMSFPAPHGPEDSAPQYANMFFNVTSHHTPAYDY 133
A F R +Q + +
Sbjct: 215 NAFYAMMDSYFKRYHEQGAIVAITADHGMNAKTDAIGRPNILFLQDLLDAQYGAQRTRVL 274
Query: 134 APNPDKQWILQVTRKMQPVHRQFTDLLMTKRLQTLQSVDDAVEKIVKE--LKDLGELNNT 191
P D + + + L + + + + +
Sbjct: 275 LPITDPYVVHHGALGSYATVYLRDAVPQRDAIDFLAGIAGVEAVLTRSQACQRFELPEDR 334
Query: 192 --YIIYTSDHGYHLGQFGLVKGKSFPFE--------FDIRVPFLMRGPGI 231
++ + LG S + +VP + +
Sbjct: 335 IGDLVVLGERLTVLGSAADKHDLSGLTVPLRSHGGVSEQKVPLIFNRKLV 384
>d1j3ma_ d.129.7.1 (A:) Hypothetical protein TT1751 (TTHA1732)
{Thermus thermophilus HB8 [TaxId: 300852]}
Length = 127
Score = 27.5 bits (61), Expect = 0.88
Identities = 10/50 (20%), Positives = 20/50 (40%), Gaps = 6/50 (12%)
Query: 161 MTKRLQTLQSVDDAVEKIVKELKDLGELNNTYIIYTSDHGYHLGQFGLVK 210
M K L+ ++ +A ++ LK+ G I+ D L ++
Sbjct: 2 MRKTLKA--TLAEARAQVEAALKEEG----FGILTEIDVAATLKAKLGLE 45
>d1mqoa_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Bacillus cereus
[TaxId: 1396]}
Length = 221
Score = 27.6 bits (60), Expect = 1.4
Identities = 11/70 (15%), Positives = 24/70 (34%)
Query: 172 DDAVEKIVKELKDLGELNNTYIIYTSDHGYHLGQFGLVKGKSFPFEFDIRVPFLMRGPGI 231
D +++++ ++ + T +I T H +G +K + L + G
Sbjct: 55 DKLTKELIEMVEKKFQKRVTDVIITHAHADRIGGIKTLKERGIKAHSTALTAELAKKNGY 114
Query: 232 VPGTMYLLDV 241
L V
Sbjct: 115 EEPLGDLQTV 124
>d1y6va1 c.76.1.1 (A:1-449) Alkaline phosphatase {Escherichia coli
[TaxId: 562]}
Length = 449
Score = 26.6 bits (58), Expect = 3.3
Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 4/43 (9%)
Query: 165 LQTLQSVDDAVEKIVKELKDLGELNNTYIIYTSDHGYHLGQFG 207
+ +D+AV++ ++ K G T +I T+DH H Q
Sbjct: 339 IGETVDLDEAVQRALEFAKKEGN---TLVIVTADHA-HASQIV 377
>d1cfza_ c.56.1.1 (A:) Hydrogenase maturating endopeptidase HybD
{Escherichia coli [TaxId: 562]}
Length = 162
Score = 26.0 bits (57), Expect = 3.6
Identities = 4/18 (22%), Positives = 12/18 (66%)
Query: 169 QSVDDAVEKIVKELKDLG 186
++ A+E+++ L++ G
Sbjct: 136 AMIEPALEQVLAALRESG 153
>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi
[TaxId: 556]}
Length = 170
Score = 26.1 bits (56), Expect = 3.6
Identities = 14/162 (8%), Positives = 43/162 (26%), Gaps = 12/162 (7%)
Query: 23 GKYL-NKYNGSYIPPGWREWGALIMNSKYYNYSINMNGRKIKHGEDYYNDYYPDLIANDS 81
G+ L ++ M + G + + E P+ +
Sbjct: 19 GRELARALGYEFVDTDIFMQHTSGMTVADVVAAEGWPGFRRRESEALQAVATPNRVVATG 78
Query: 82 VRFLRQSKQSFSKKPIMLVMSFPAPHGPEDSAPQYANMFFNVTSHHTPAYDYAPNPDKQW 141
+ + + V+ AP + + + P +
Sbjct: 79 GGMVLLEQNRQFMRAHGTVVYLFAPA-------EELALRLQASLQAHQRPTLTGRPIAEE 131
Query: 142 ILQVTRKMQPVHRQFTDLLMTKRLQTLQSVDDAVEKIVKELK 183
+ V R+ + +++ + Q V ++++ ++
Sbjct: 132 MEAVLREREALYQDVAHY----VVDATQPPAAIVCELMQTMR 169
>d2cfua2 d.157.1.13 (A:20-524) Alkylsulfatase SdsA1 {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 505
Score = 26.7 bits (58), Expect = 4.1
Identities = 11/56 (19%), Positives = 20/56 (35%)
Query: 167 TLQSVDDAVEKIVKELKDLGELNNTYIIYTSDHGYHLGQFGLVKGKSFPFEFDIRV 222
TL + A ++LGE +IY+ H H G + +++
Sbjct: 120 TLTTPATARAAYELVSRELGERPIRTVIYSHAHADHFGGVRGLVEPQQVASGAVQI 175
>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}
Length = 225
Score = 25.0 bits (53), Expect = 9.2
Identities = 22/193 (11%), Positives = 40/193 (20%), Gaps = 19/193 (9%)
Query: 11 NLLYFDISHGYFGKYLNKYNGSYIPPGWREWGALIMNSKYYNYSINMNGRKIKHGEDYYN 70
D Y L + L + S N N I GED
Sbjct: 28 QWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVSTNGNLEVILEGEDVSG 87
Query: 71 DYYPDLIANDSVRFLRQSKQSFSKKPIMLVMSFPAPHGPEDSAPQYANMFFNVTSHHTPA 130
+ +AN + + + + + A
Sbjct: 88 EIRTQEVANAASQVAAFPRVREALLRRQRAFRELPGLIADGRDMGTVVFPDAPVKIFLDA 147
Query: 131 YDYAPNPDKQWILQVTRKMQPVHRQFTDLLMTKRLQ-------------------TLQSV 171
+ LQV R ++ T S+
Sbjct: 148 SSEERAHRRMLQLQVKGFSVNFERLLAEIKERDDRDRNRAVAPLVPAADALVLDSTTLSI 207
Query: 172 DDAVEKIVKELKD 184
+ +EK ++ +
Sbjct: 208 EQVIEKALQYARQ 220
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.139 0.431
Gapped
Lambda K H
0.267 0.0686 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,074,267
Number of extensions: 52764
Number of successful extensions: 186
Number of sequences better than 10.0: 1
Number of HSP's gapped: 184
Number of HSP's successfully gapped: 27
Length of query: 271
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 187
Effective length of database: 1,254,276
Effective search space: 234549612
Effective search space used: 234549612
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (23.9 bits)