BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5201
(244 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5
Length = 780
Score = 70.5 bits (171), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 54/106 (50%), Gaps = 16/106 (15%)
Query: 39 DHTHYEILELERNCSPKEIRSAFIRLSKQFHPDKNPSNPALHDKFVKLNEAYSILNDMDR 98
D Y +L + + S +EIR AF +L+ + HPDKNP+NP H F+K+N AY +L D D
Sbjct: 20 DQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDL 79
Query: 99 RRNYDASLNLQTVRQNMFVHKTRARSSYSDSGERPENWKDY-YDFA 143
R+ YD K + + G + E+W Y YDF
Sbjct: 80 RKKYD---------------KYGEKGLEDNQGGQYESWSYYRYDFG 110
>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5
pdb|3APQ|B Chain B, Crystal Structure Of J-Trx1 Fragment Of Erdj5
Length = 210
Score = 68.6 bits (166), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 41/61 (67%)
Query: 43 YEILELERNCSPKEIRSAFIRLSKQFHPDKNPSNPALHDKFVKLNEAYSILNDMDRRRNY 102
Y +L + + S +EIR AF +L+ + HPDKNP+NP H F+K+N AY +L D D R+ Y
Sbjct: 5 YSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKY 64
Query: 103 D 103
D
Sbjct: 65 D 65
>pdb|2DN9|A Chain A, Solution Structure Of J-Domain From The Dnaj Homolog,
Human Tid1 Protein
Length = 79
Score = 67.8 bits (164), Expect = 5e-12, Method: Composition-based stats.
Identities = 32/70 (45%), Positives = 48/70 (68%)
Query: 35 SSGQDHTHYEILELERNCSPKEIRSAFIRLSKQFHPDKNPSNPALHDKFVKLNEAYSILN 94
SSG +Y+IL + RN S KEI+ A+ +L+K++HPD N +P +KF +L EAY +L+
Sbjct: 2 SSGSSGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLS 61
Query: 95 DMDRRRNYDA 104
D +R+ YDA
Sbjct: 62 DEVKRKQYDA 71
>pdb|2CTW|A Chain A, Solution Structure Of J-Domain From Mouse Dnaj Subfamily C
Menber 5
Length = 109
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 50/84 (59%), Gaps = 2/84 (2%)
Query: 32 QRYSSGQDHTHYEILELERNCSPKEIRSAFIRLSKQFHPDKNPSNPALHDKFVKLNEAYS 91
QR S + Y +L L++N + +I+ ++ +L+ ++HPDKNP NP DKF ++N A++
Sbjct: 9 QRSLSTSGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHA 68
Query: 92 ILNDMDRRRNYD--ASLNLQTVRQ 113
IL D +R YD SL L Q
Sbjct: 69 ILTDATKRNIYDKYGSLGLYVAEQ 92
>pdb|2CUG|A Chain A, Solution Structure Of The J Domain Of The Pseudo Dnaj
Protein, Mouse Hypothetical Mkiaa0962
Length = 88
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 45/65 (69%), Gaps = 1/65 (1%)
Query: 39 DHTHYEILELERNCSPKEIRSAFIRLSKQFHPDKNPSNPALHDKFVKLNEAYSILNDMDR 98
D Y +L + R S +I+ A+ +L++++HPDKN +P D+F+++++AY IL++ ++
Sbjct: 16 DFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKN-KDPGAEDRFIQISKAYEILSNEEK 74
Query: 99 RRNYD 103
R NYD
Sbjct: 75 RTNYD 79
>pdb|1XBL|A Chain A, Nmr Structure Of The J-Domain (Residues 2-76) In The
Escherichia Coli N-Terminal Fragment (Residues 2-108) Of
The Molecular Chaperone Dnaj, 20 Structures
Length = 107
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 38/62 (61%)
Query: 42 HYEILELERNCSPKEIRSAFIRLSKQFHPDKNPSNPALHDKFVKLNEAYSILNDMDRRRN 101
+YEIL + + +EIR A+ RL+ ++HPD+N + KF ++ EAY +L D +R
Sbjct: 5 YYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAA 64
Query: 102 YD 103
YD
Sbjct: 65 YD 66
>pdb|1BQ0|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-104) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 103
Score = 58.2 bits (139), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 38/62 (61%)
Query: 42 HYEILELERNCSPKEIRSAFIRLSKQFHPDKNPSNPALHDKFVKLNEAYSILNDMDRRRN 101
+YEIL + + +EIR A+ RL+ ++HPD+N + KF ++ EAY +L D +R
Sbjct: 5 YYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAA 64
Query: 102 YD 103
YD
Sbjct: 65 YD 66
>pdb|2LGW|A Chain A, Solution Structure Of The J Domain Of Hsj1a
Length = 99
Score = 57.4 bits (137), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 43/64 (67%), Gaps = 1/64 (1%)
Query: 41 THYEILELERNCSPKEIRSAFIRLSKQFHPDKNPSNPALHD-KFVKLNEAYSILNDMDRR 99
++YEIL++ R+ S +I+ A+ R + Q+HPDKNP N + KF ++ EAY +L+D +R
Sbjct: 3 SYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKR 62
Query: 100 RNYD 103
YD
Sbjct: 63 EIYD 66
>pdb|2CTR|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B
Menber 9
Length = 88
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 43/62 (69%), Gaps = 1/62 (1%)
Query: 42 HYEILELERNCSPKEIRSAFIRLSKQFHPDKNPSNPALHDKFVKLNEAYSILNDMDRRRN 101
+Y+IL + ++ S ++I+ AF +L+ ++HPDKN S P KF ++ EAY L+D +RR+
Sbjct: 9 YYDILGVPKSASERQIKKAFHKLAMKYHPDKNKS-PDAEAKFREIAEAYETLSDANRRKE 67
Query: 102 YD 103
YD
Sbjct: 68 YD 69
>pdb|2CTP|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B
Menber 12
Length = 78
Score = 56.2 bits (134), Expect = 2e-08, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 45/69 (65%), Gaps = 1/69 (1%)
Query: 35 SSGQDHTHYEILELERNCSPKEIRSAFIRLSKQFHPDKNPSNPALHDKFVKLNEAYSILN 94
SSG +YEIL + R S ++++ A+ RL+ +FHPDKN + P + F + AY++L+
Sbjct: 2 SSGSSGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHA-PGATEAFKAIGTAYAVLS 60
Query: 95 DMDRRRNYD 103
+ ++R+ YD
Sbjct: 61 NPEKRKQYD 69
>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog
Subfamily B Member 8
Length = 92
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 44/63 (69%), Gaps = 1/63 (1%)
Query: 42 HYEILELERNCSPKEIRSAFIRLSKQFHPDKNPSNPALHDKFVKL-NEAYSILNDMDRRR 100
+YE+L ++ + SP++I+ A+ +L+ ++HPDKNP N +K KL +EAY +L+D +R
Sbjct: 11 YYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRS 70
Query: 101 NYD 103
YD
Sbjct: 71 LYD 73
>pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human Protein
Hcg3, A Hypothetical Protein Tmp_locus_21
Length = 82
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 42/63 (66%), Gaps = 1/63 (1%)
Query: 42 HYEILELERNCSPKEIRSAFIRLSKQFHPDKNPSNPALHD-KFVKLNEAYSILNDMDRRR 100
+YE+L++ R S + I+ A+ +L+ ++HPDKNP N + +F ++ EAY +L+D +R
Sbjct: 11 YYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKRD 70
Query: 101 NYD 103
YD
Sbjct: 71 IYD 73
>pdb|1BQZ|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-78) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 77
Score = 53.1 bits (126), Expect = 1e-07, Method: Composition-based stats.
Identities = 24/62 (38%), Positives = 38/62 (61%)
Query: 42 HYEILELERNCSPKEIRSAFIRLSKQFHPDKNPSNPALHDKFVKLNEAYSILNDMDRRRN 101
+YEIL + + +EIR A+ RL+ ++HPD+N + KF ++ EAY +L D +R
Sbjct: 5 YYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAA 64
Query: 102 YD 103
YD
Sbjct: 65 YD 66
>pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like Domain
From Homo Sapiens
Length = 71
Score = 50.8 bits (120), Expect = 6e-07, Method: Composition-based stats.
Identities = 22/66 (33%), Positives = 47/66 (71%), Gaps = 3/66 (4%)
Query: 38 QDHTHYEILELERNCSPKEIRSAFIRLSKQFHPDKNPSNPALHDKFVKLNEAYSILNDMD 97
++ T+Y++L ++ N + +E++ A+ +L+ ++HPDKNP+ +KF ++++AY +L+D
Sbjct: 4 KETTYYDVLGVKPNATQEELKKAYRKLALKYHPDKNPNE---GEKFKQISQAYEVLSDAK 60
Query: 98 RRRNYD 103
+R YD
Sbjct: 61 KRELYD 66
>pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr
Length = 77
Score = 48.9 bits (115), Expect = 3e-06, Method: Composition-based stats.
Identities = 24/62 (38%), Positives = 39/62 (62%), Gaps = 1/62 (1%)
Query: 42 HYEILELERNCSPKEIRSAFIRLSKQFHPDKNPSNPALHDKFVKLNEAYSILNDMDRRRN 101
+Y+ L L R S +EI+ A+ R + ++HPDKN P +KF ++ EAY +L+D +R
Sbjct: 5 YYQTLGLARGASDEEIKRAYRRQALRYHPDKN-KEPGAEEKFKEIAEAYDVLSDPRKREI 63
Query: 102 YD 103
+D
Sbjct: 64 FD 65
>pdb|2OCH|A Chain A, J-domain Of Dnj-12 From Caenorhabditis Elegans
Length = 73
Score = 47.0 bits (110), Expect = 9e-06, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 43/62 (69%), Gaps = 3/62 (4%)
Query: 42 HYEILELERNCSPKEIRSAFIRLSKQFHPDKNPSNPALHDKFVKLNEAYSILNDMDRRRN 101
+Y++L ++ + S E++ A+ +++ +FHPDKNP ++F ++++AY +L+D +R+
Sbjct: 10 YYDVLGVKPDASDNELKKAYRKMALKFHPDKNPDGA---EQFKQISQAYEVLSDEKKRQI 66
Query: 102 YD 103
YD
Sbjct: 67 YD 68
>pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution.
pdb|3LZ8|B Chain B, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution
Length = 329
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 42 HYEILELERNCSPKEIRSAFIRLSKQFHPDKNPSNPALHDKFVKLNEAYSILNDMDRRRN 101
+Y IL ++ K I++A+ RL++++HPD + N A KF L EA+ +L D RR
Sbjct: 30 YYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDA-EAKFKDLAEAWEVLKDEQRRAE 88
Query: 102 YD 103
YD
Sbjct: 89 YD 90
>pdb|2YUA|A Chain A, Solution Structure Of The Dnaj Domain From Human Williams-
Beuren Syndrome Chromosome Region 18 Protein
Length = 99
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 36/64 (56%)
Query: 43 YEILELERNCSPKEIRSAFIRLSKQFHPDKNPSNPALHDKFVKLNEAYSILNDMDRRRNY 102
Y++L + + +I++A+ R +HPD+N + ++F ++++AY +L RR Y
Sbjct: 20 YDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRRKY 79
Query: 103 DASL 106
D L
Sbjct: 80 DRGL 83
>pdb|2CTQ|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily C
Menber 12
Length = 112
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 39/78 (50%)
Query: 26 TGLCCNQRYSSGQDHTHYEILELERNCSPKEIRSAFIRLSKQFHPDKNPSNPALHDKFVK 85
+G+ Y S +Y +L + S ++I + F + + HPDK+P NP + F K
Sbjct: 6 SGMDAILNYRSEDTEDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQK 65
Query: 86 LNEAYSILNDMDRRRNYD 103
L +A IL + + R YD
Sbjct: 66 LQKAKEILTNEESRARYD 83
>pdb|2KQX|A Chain A, Nmr Structure Of The J-Domain (Residues 2-72) In The
Escherichia Coli Cbpa
Length = 73
Score = 40.4 bits (93), Expect = 9e-04, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Query: 42 HYEILELERNCSPKEIRSAFIRLSKQFHPDKNPSNPALHDKFVKLNEAYSILNDMDRRRN 101
+Y I+ ++ K I++A+ RL++++HPD + P +F ++ EA+ +L+D RR
Sbjct: 7 YYAIMGVKPTDDLKTIKTAYRRLARKYHPDVS-KEPDAEARFKEVAEAWEVLSDEQRRAE 65
Query: 102 YD 103
YD
Sbjct: 66 YD 67
>pdb|2O37|A Chain A, J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From
Saccharomyces Cerevisiae
Length = 92
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 38/61 (62%), Gaps = 3/61 (4%)
Query: 43 YEILELERNCSPKEIRSAFIRLSKQFHPDKNPSNPALHDKFVKLNEAYSILNDMDRRRNY 102
Y++L + + + +E++ + + + ++HPDK + +KF +++EA+ ILND +R Y
Sbjct: 11 YDLLGVSPSANEQELKKGYRKAALKYHPDKPTGD---TEKFKEISEAFEILNDPQKREIY 67
Query: 103 D 103
D
Sbjct: 68 D 68
>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312
Length = 450
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 4/83 (4%)
Query: 25 RTGLCCNQRY-SSGQDHTHYEILELERNCSPKEIRSAFIRLSKQFHPD---KNPSNPALH 80
R GL QR Q +Y+IL ++RN +EI A+ +L+ Q+HPD
Sbjct: 366 REGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAE 425
Query: 81 DKFVKLNEAYSILNDMDRRRNYD 103
KF+ + A +L+D + R+ +D
Sbjct: 426 KKFIDIAAAKEVLSDPEXRKKFD 448
>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|B Chain B, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|C Chain C, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
Length = 450
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 4/83 (4%)
Query: 25 RTGLCCNQRY-SSGQDHTHYEILELERNCSPKEIRSAFIRLSKQFHPD---KNPSNPALH 80
R GL QR Q +Y+IL ++RN +EI A+ +L+ Q+HPD
Sbjct: 366 REGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAE 425
Query: 81 DKFVKLNEAYSILNDMDRRRNYD 103
KF+ + A +L+D + R+ +D
Sbjct: 426 KKFIDIAAAKEVLSDPEMRKKFD 448
>pdb|2L6L|A Chain A, Solution Structure Of Human J-Protein Co-Chaperone, Dph4
Length = 155
Score = 35.0 bits (79), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 38/67 (56%), Gaps = 6/67 (8%)
Query: 43 YEILELERNCSPKEIRSAFIRLSKQFHPDKNPSN-PA-----LHDKFVKLNEAYSILNDM 96
Y IL + + + +++ + +L +HPDK ++ PA KF+++++A+ IL +
Sbjct: 13 YSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNE 72
Query: 97 DRRRNYD 103
+ +R YD
Sbjct: 73 ETKREYD 79
>pdb|1WJZ|A Chain A, Soluiotn Structure Of J-Domain Of Mouse Dnaj Like Protein
Length = 94
Score = 34.3 bits (77), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 38/67 (56%), Gaps = 6/67 (8%)
Query: 43 YEILELERNCSPKEIRSAFIRLSKQFHPDKNPSN-PA-----LHDKFVKLNEAYSILNDM 96
Y IL + + + +++ + +L +HPDK ++ PA KF+++++A+ IL +
Sbjct: 19 YSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNE 78
Query: 97 DRRRNYD 103
+ ++ YD
Sbjct: 79 ETKKKYD 85
>pdb|4IT5|A Chain A, Chaperone Hscb From Vibrio Cholerae
pdb|4IT5|B Chain B, Chaperone Hscb From Vibrio Cholerae
pdb|4IT5|C Chain C, Chaperone Hscb From Vibrio Cholerae
pdb|4IT5|D Chain D, Chaperone Hscb From Vibrio Cholerae
Length = 174
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 9/64 (14%)
Query: 57 IRSAFIRLSKQFHPDKNPSNPALHDKF------VKLNEAYSILNDMDRRRNYDASLNLQT 110
+ S F L K+FHPD N + + D+ ++N+AY L D RR Y L+LQ
Sbjct: 23 LSSQFRALQKRFHPD-NFATASERDRLXAVQQAAQINDAYQTLKDPLRRAEY--LLSLQG 79
Query: 111 VRQN 114
+ N
Sbjct: 80 IEXN 83
>pdb|2QSA|A Chain A, Crystal Structure Of J-Domain Of Dnaj Homolog Dnj-2
Precursor From C.Elegans
Length = 109
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Query: 43 YEILELERNCSPKE-IRSAFIRLSKQFHPD--KNPSNPAL-HDKFVKLNEAYSILNDMDR 98
Y++LE+ R K+ + A+ L+++ HPD KN L ++F + AY L D +
Sbjct: 18 YDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEA 77
Query: 99 RRNYDASLN 107
+ NYD L+
Sbjct: 78 KTNYDYYLD 86
>pdb|1GH6|A Chain A, Retinoblastoma Pocket Complexed With Sv40 Large T
Antigen
Length = 114
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
Query: 57 IRSAFIRLSKQFHPDKNPSNPALHDKFVKLNEAYSILND 95
+R A+++ K+FHPDK +K K+N Y + D
Sbjct: 27 MRKAYLKKCKEFHPDKGGD----EEKMKKMNTLYKKMED 61
>pdb|3OZU|A Chain A, The Crystal Structure Of Flavohemoglobin From R. Eutrophus
In Complex With Miconazole
pdb|3OZV|B Chain B, The Crystal Structure Of Flavohemoglobin From R. Eutrophus
In Complex With Econazole
pdb|3OZV|A Chain A, The Crystal Structure Of Flavohemoglobin From R. Eutrophus
In Complex With Econazole
pdb|3OZW|A Chain A, The Crystal Structure Of Flavohemoglobin From R. Eutrophus
In Complex With Ketoconazole
pdb|3OZW|B Chain B, The Crystal Structure Of Flavohemoglobin From R. Eutrophus
In Complex With Ketoconazole
Length = 403
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 38/88 (43%), Gaps = 12/88 (13%)
Query: 126 YSDSGERPENWKDYYDFAAQMKRNESIHVPKFLHKFETLSKATLVMLLIG------VATG 179
Y S E+P WK + F + KR ES + F+ E +V G +
Sbjct: 141 YERSAEQPGGWKGWRTFVIREKRPESDVITSFI--LEPADGGPVVNFEPGQYTSVAIDVP 198
Query: 180 ALGLQILAVQYSKTFPRNVVNSREMEIS 207
ALGLQ + QYS + ++ N R IS
Sbjct: 199 ALGLQQIR-QYSLS---DMPNGRSYRIS 222
>pdb|2PF4|E Chain E, Crystal Structure Of The Full-Length Simian Virus 40
Small T Antigen Complexed With The Protein Phosphatase
2a Aalpha Subunit
pdb|2PF4|F Chain F, Crystal Structure Of The Full-Length Simian Virus 40
Small T Antigen Complexed With The Protein Phosphatase
2a Aalpha Subunit
pdb|2PF4|G Chain G, Crystal Structure Of The Full-Length Simian Virus 40
Small T Antigen Complexed With The Protein Phosphatase
2a Aalpha Subunit
pdb|2PF4|H Chain H, Crystal Structure Of The Full-Length Simian Virus 40
Small T Antigen Complexed With The Protein Phosphatase
2a Aalpha Subunit
Length = 174
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
Query: 57 IRSAFIRLSKQFHPDKNPSNPALHDKFVKLNEAYSILND 95
+R A+++ K+FHPDK +K K+N Y + D
Sbjct: 30 MRKAYLKKCKEFHPDKGGD----EEKMKKMNTLYKKMED 64
>pdb|1CQX|A Chain A, Crystal Structure Of The Flavohemoglobin From Alcaligenes
Eutrophus At 1.75 A Resolution
pdb|1CQX|B Chain B, Crystal Structure Of The Flavohemoglobin From Alcaligenes
Eutrophus At 1.75 A Resolution
Length = 403
Score = 28.5 bits (62), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 38/88 (43%), Gaps = 12/88 (13%)
Query: 126 YSDSGERPENWKDYYDFAAQMKRNESIHVPKFLHKFETLSKATLVMLLIG------VATG 179
Y S E+P WK + F + KR ES + F+ E +V G +
Sbjct: 141 YERSAEQPGGWKGWRTFVIREKRPESDVITSFI--LEPADGGPVVNFEPGQYTSVAIDVP 198
Query: 180 ALGLQILAVQYSKTFPRNVVNSREMEIS 207
ALGLQ + QYS + ++ N R IS
Sbjct: 199 ALGLQQIR-QYSLS---DMPNGRTYRIS 222
>pdb|2YQI|A Chain A, Solution Structure Of The Second Hmg-Box Domain From
High Mobility Group Protein B3
Length = 81
Score = 27.3 bits (59), Expect = 8.4, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Query: 53 SPKEIRSAFIRLSKQFHPDKNPSNPALH--DKFVKLNEAYSILNDMDRR 99
+PK S F +F P +NP + D KL E ++ LND +++
Sbjct: 9 APKRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLNDSEKQ 57
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.131 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,917,974
Number of Sequences: 62578
Number of extensions: 259071
Number of successful extensions: 661
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 621
Number of HSP's gapped (non-prelim): 38
length of query: 244
length of database: 14,973,337
effective HSP length: 96
effective length of query: 148
effective length of database: 8,965,849
effective search space: 1326945652
effective search space used: 1326945652
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)