Query psy5201
Match_columns 244
No_of_seqs 197 out of 2174
Neff 7.4
Searched_HMMs 46136
Date Fri Aug 16 19:56:10 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5201.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5201hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0484 DnaJ DnaJ-class molecu 99.9 6.2E-25 1.3E-29 198.5 9.5 74 38-111 2-75 (371)
2 KOG0713|consensus 99.9 1.2E-23 2.6E-28 186.0 7.6 72 37-108 13-84 (336)
3 KOG0717|consensus 99.9 8.7E-22 1.9E-26 179.4 15.3 185 35-226 3-203 (508)
4 PRK14288 chaperone protein Dna 99.8 9.9E-21 2.1E-25 173.8 7.9 70 39-108 2-71 (369)
5 KOG0712|consensus 99.8 4.1E-20 8.9E-25 165.2 8.0 70 38-110 2-71 (337)
6 PRK14286 chaperone protein Dna 99.8 1E-19 2.2E-24 167.2 9.8 70 39-108 3-72 (372)
7 PRK14296 chaperone protein Dna 99.8 5E-20 1.1E-24 169.2 7.6 69 39-108 3-71 (372)
8 PRK14279 chaperone protein Dna 99.8 5.6E-20 1.2E-24 170.0 7.8 69 39-107 8-76 (392)
9 PF00226 DnaJ: DnaJ domain; I 99.8 2.3E-19 5E-24 124.5 6.4 63 41-103 1-64 (64)
10 KOG0716|consensus 99.8 3.1E-19 6.8E-24 153.6 6.5 70 39-108 30-99 (279)
11 PRK14285 chaperone protein Dna 99.8 4.7E-19 1E-23 162.4 7.7 69 40-108 3-71 (365)
12 PRK14282 chaperone protein Dna 99.8 5.8E-19 1.3E-23 162.1 7.8 70 39-108 3-73 (369)
13 KOG0691|consensus 99.8 5.6E-19 1.2E-23 156.2 7.3 70 39-108 4-73 (296)
14 PRK14277 chaperone protein Dna 99.8 6.8E-19 1.5E-23 162.5 8.2 70 39-108 4-73 (386)
15 PRK14287 chaperone protein Dna 99.8 8.2E-19 1.8E-23 161.2 7.9 69 39-108 3-71 (371)
16 PRK14295 chaperone protein Dna 99.8 1.1E-18 2.3E-23 161.3 8.1 66 39-104 8-73 (389)
17 PTZ00037 DnaJ_C chaperone prot 99.8 8.2E-19 1.8E-23 163.2 7.2 71 34-108 22-92 (421)
18 PRK14294 chaperone protein Dna 99.8 1.2E-18 2.5E-23 160.0 8.1 70 39-108 3-72 (366)
19 PRK14299 chaperone protein Dna 99.8 1.1E-18 2.4E-23 155.5 7.8 69 39-108 3-71 (291)
20 PRK14276 chaperone protein Dna 99.8 9.6E-19 2.1E-23 161.2 7.4 69 39-108 3-71 (380)
21 PRK14283 chaperone protein Dna 99.8 1.1E-18 2.4E-23 160.7 7.7 69 39-108 4-72 (378)
22 PRK14298 chaperone protein Dna 99.8 9.5E-19 2.1E-23 161.1 7.2 69 39-108 4-72 (377)
23 PRK14301 chaperone protein Dna 99.8 1E-18 2.3E-23 160.6 7.3 70 39-108 3-72 (373)
24 PRK14284 chaperone protein Dna 99.8 1.4E-18 2.9E-23 160.8 7.9 69 40-108 1-69 (391)
25 PRK14297 chaperone protein Dna 99.8 1.1E-18 2.3E-23 161.0 7.2 70 39-108 3-72 (380)
26 PRK14291 chaperone protein Dna 99.8 1.3E-18 2.8E-23 160.5 7.6 69 39-108 2-70 (382)
27 PRK14278 chaperone protein Dna 99.8 1.3E-18 2.8E-23 160.2 7.4 68 40-108 3-70 (378)
28 PRK10767 chaperone protein Dna 99.7 2.2E-18 4.7E-23 158.5 8.0 70 39-108 3-72 (371)
29 PRK14280 chaperone protein Dna 99.7 2.1E-18 4.6E-23 158.7 7.6 69 39-108 3-71 (376)
30 PRK14281 chaperone protein Dna 99.7 2.1E-18 4.5E-23 159.8 7.5 69 40-108 3-71 (397)
31 KOG0715|consensus 99.7 2.8E-18 6E-23 152.4 6.9 68 41-109 44-111 (288)
32 PTZ00341 Ring-infected erythro 99.7 5.2E-17 1.1E-21 159.8 14.1 71 37-108 570-640 (1136)
33 PRK14289 chaperone protein Dna 99.7 9E-18 1.9E-22 155.1 8.1 70 39-108 4-73 (386)
34 PRK14290 chaperone protein Dna 99.7 8.9E-18 1.9E-22 154.1 7.4 69 40-108 3-72 (365)
35 KOG0721|consensus 99.7 3.5E-17 7.5E-22 136.9 9.8 72 37-108 96-167 (230)
36 TIGR02349 DnaJ_bact chaperone 99.7 1.5E-17 3.3E-22 152.0 7.1 67 41-108 1-67 (354)
37 PRK14300 chaperone protein Dna 99.7 1.5E-17 3.3E-22 152.9 7.0 68 40-108 3-70 (372)
38 smart00271 DnaJ DnaJ molecular 99.7 3.1E-17 6.7E-22 112.1 6.4 58 40-97 1-59 (60)
39 PRK14293 chaperone protein Dna 99.7 2.3E-17 5E-22 151.8 7.4 68 40-108 3-70 (374)
40 PRK10266 curved DNA-binding pr 99.7 2.4E-17 5.2E-22 147.9 7.0 67 40-107 4-70 (306)
41 PRK14292 chaperone protein Dna 99.7 2.4E-17 5.3E-22 151.5 7.2 68 40-108 2-69 (371)
42 KOG0719|consensus 99.7 3.2E-17 7E-22 138.3 7.3 72 37-108 11-84 (264)
43 KOG0718|consensus 99.7 5E-17 1.1E-21 148.6 7.5 74 37-110 6-82 (546)
44 cd06257 DnaJ DnaJ domain or J- 99.7 1.1E-16 2.4E-21 107.3 6.6 55 41-95 1-55 (55)
45 COG2214 CbpA DnaJ-class molecu 99.6 9.4E-16 2E-20 128.7 7.4 69 38-106 4-73 (237)
46 KOG0722|consensus 99.6 7.2E-16 1.6E-20 131.7 6.3 76 25-108 25-100 (329)
47 TIGR03835 termin_org_DnaJ term 99.6 3.5E-15 7.5E-20 144.2 8.3 68 40-108 2-69 (871)
48 PRK05014 hscB co-chaperone Hsc 99.6 9.8E-15 2.1E-19 120.6 7.7 69 40-108 1-76 (171)
49 PHA03102 Small T antigen; Revi 99.6 5.3E-15 1.1E-19 119.4 5.7 65 40-108 5-71 (153)
50 PRK03578 hscB co-chaperone Hsc 99.5 3E-14 6.5E-19 118.1 8.2 70 39-108 5-81 (176)
51 PRK00294 hscB co-chaperone Hsc 99.5 3.1E-14 6.8E-19 117.6 8.3 71 38-108 2-79 (173)
52 PRK01356 hscB co-chaperone Hsc 99.5 2.6E-14 5.7E-19 117.4 7.7 69 40-108 2-75 (166)
53 KOG0624|consensus 99.5 5E-14 1.1E-18 125.7 7.6 72 37-108 391-465 (504)
54 KOG0720|consensus 99.4 1.5E-13 3.3E-18 125.9 6.0 70 37-107 232-301 (490)
55 KOG0550|consensus 99.4 5.5E-13 1.2E-17 121.2 4.8 74 36-109 369-443 (486)
56 KOG0714|consensus 99.3 3.9E-12 8.3E-17 111.5 5.7 73 39-112 2-75 (306)
57 COG5407 SEC63 Preprotein trans 99.3 1.6E-11 3.4E-16 112.6 9.4 70 39-108 97-171 (610)
58 PTZ00100 DnaJ chaperone protei 99.3 5.1E-12 1.1E-16 97.3 5.0 52 39-94 64-115 (116)
59 PRK09430 djlA Dna-J like membr 99.3 4.9E-12 1.1E-16 111.5 5.5 58 38-95 198-262 (267)
60 PHA02624 large T antigen; Prov 99.2 1.6E-11 3.4E-16 117.6 7.3 62 38-103 9-72 (647)
61 KOG1150|consensus 99.2 3.6E-10 7.9E-15 93.8 14.1 70 36-105 49-119 (250)
62 PRK01773 hscB co-chaperone Hsc 99.2 7.5E-11 1.6E-15 97.5 7.6 68 40-107 2-76 (173)
63 TIGR00714 hscB Fe-S protein as 99.1 4.2E-10 9.1E-15 91.8 7.2 57 52-108 3-64 (157)
64 COG5269 ZUO1 Ribosome-associat 99.0 4.4E-09 9.5E-14 91.2 12.5 74 35-108 38-116 (379)
65 KOG0568|consensus 98.5 1.4E-07 3E-12 80.2 4.7 56 39-95 46-102 (342)
66 KOG1789|consensus 98.2 1.8E-06 3.9E-11 86.5 5.6 54 38-94 1279-1336(2235)
67 KOG3192|consensus 97.7 4.8E-05 1E-09 61.2 4.7 72 37-108 5-83 (168)
68 KOG0723|consensus 97.7 6.9E-05 1.5E-09 56.5 4.8 51 42-96 58-108 (112)
69 COG1076 DjlA DnaJ-domain-conta 96.5 0.0023 5.1E-08 52.9 3.1 67 41-107 2-75 (174)
70 COG1076 DjlA DnaJ-domain-conta 96.3 0.0024 5.1E-08 52.9 2.4 55 39-93 112-173 (174)
71 KOG0431|consensus 95.7 0.014 3.1E-07 55.3 4.6 47 47-93 395-448 (453)
72 PF03656 Pam16: Pam16; InterP 92.8 0.24 5.2E-06 38.9 5.0 50 41-94 59-108 (127)
73 TIGR02209 ftsL_broad cell divi 86.1 9.7 0.00021 27.1 8.7 18 227-244 61-78 (85)
74 PF12732 YtxH: YtxH-like prote 85.2 7.2 0.00016 27.3 7.4 50 170-219 2-51 (74)
75 PF13446 RPT: A repeated domai 84.7 2.3 4.9E-05 28.7 4.5 27 40-66 5-31 (62)
76 PF14687 DUF4460: Domain of un 81.5 3.8 8.2E-05 31.5 5.1 47 50-96 4-54 (112)
77 PF04999 FtsL: Cell division p 80.0 21 0.00045 26.1 8.9 19 226-244 71-89 (97)
78 KOG0724|consensus 78.1 2.3 5E-05 38.5 3.4 54 51-104 3-60 (335)
79 PF12072 DUF3552: Domain of un 75.1 21 0.00046 30.0 8.3 20 170-189 3-22 (201)
80 TIGR02976 phageshock_pspB phag 72.8 31 0.00068 24.5 7.7 18 220-237 52-69 (75)
81 PF11833 DUF3353: Protein of u 72.2 9.4 0.0002 32.2 5.4 38 49-94 1-38 (194)
82 PRK13454 F0F1 ATP synthase sub 71.5 26 0.00057 28.9 7.9 14 198-211 59-72 (181)
83 PRK13453 F0F1 ATP synthase sub 71.1 39 0.00084 27.6 8.7 43 167-213 19-61 (173)
84 PF06667 PspB: Phage shock pro 69.3 38 0.00083 24.1 8.0 17 221-237 53-69 (75)
85 PF01956 DUF106: Integral memb 68.7 16 0.00035 29.6 6.0 66 167-234 10-76 (168)
86 COG5552 Uncharacterized conser 68.5 19 0.00042 25.6 5.3 61 40-105 3-63 (88)
87 CHL00118 atpG ATP synthase CF0 68.5 47 0.001 26.6 8.6 13 199-211 51-63 (156)
88 PRK07353 F0F1 ATP synthase sub 68.0 53 0.0012 25.5 8.7 15 198-212 33-47 (140)
89 PRK05759 F0F1 ATP synthase sub 65.3 56 0.0012 25.8 8.5 23 167-189 5-27 (156)
90 PRK13654 magnesium-protoporphy 65.0 5.2 0.00011 36.4 2.5 92 2-94 215-309 (355)
91 CHL00185 ycf59 magnesium-proto 64.7 2.8 6E-05 38.0 0.7 93 2-95 211-306 (351)
92 cd01047 ACSF Aerobic Cyclase S 64.5 4.5 9.7E-05 36.3 2.0 92 2-94 195-289 (323)
93 PRK06231 F0F1 ATP synthase sub 64.4 59 0.0013 27.5 8.8 27 163-189 45-71 (205)
94 PRK14472 F0F1 ATP synthase sub 63.2 71 0.0015 26.0 8.8 14 199-212 47-60 (175)
95 PF10883 DUF2681: Protein of u 62.0 60 0.0013 23.8 8.8 15 227-241 72-86 (87)
96 PF14584 DUF4446: Protein of u 61.8 63 0.0014 26.1 8.0 67 171-237 8-80 (151)
97 TIGR02029 AcsF magnesium-proto 60.4 3.8 8.2E-05 37.0 0.7 92 2-94 205-299 (337)
98 COG0711 AtpF F0F1-type ATP syn 60.1 71 0.0015 25.8 8.2 19 198-216 34-52 (161)
99 COG3167 PilO Tfp pilus assembl 59.8 64 0.0014 27.2 7.8 67 169-237 26-93 (211)
100 PRK09173 F0F1 ATP synthase sub 59.6 88 0.0019 25.0 8.6 16 166-181 5-20 (159)
101 PRK13461 F0F1 ATP synthase sub 59.5 89 0.0019 24.9 8.8 41 168-212 7-47 (159)
102 COG1422 Predicted membrane pro 58.9 83 0.0018 26.7 8.4 23 210-232 84-106 (201)
103 PRK14471 F0F1 ATP synthase sub 58.1 95 0.0021 24.9 8.6 20 168-187 10-29 (164)
104 PLN02508 magnesium-protoporphy 56.4 6.6 0.00014 35.7 1.6 92 2-94 211-305 (357)
105 PF06305 DUF1049: Protein of u 53.5 57 0.0012 21.9 5.7 13 172-184 23-35 (68)
106 PRK14474 F0F1 ATP synthase sub 53.4 1E+02 0.0022 26.9 8.6 44 167-214 6-49 (250)
107 PRK09458 pspB phage shock prot 52.4 83 0.0018 22.4 7.6 15 221-235 53-67 (75)
108 TIGR02209 ftsL_broad cell divi 52.0 81 0.0018 22.1 8.5 24 207-230 44-67 (85)
109 PRK08476 F0F1 ATP synthase sub 51.5 1.2E+02 0.0026 23.9 8.0 15 169-183 10-24 (141)
110 PF10041 DUF2277: Uncharacteri 51.4 77 0.0017 22.6 6.0 46 41-87 4-49 (78)
111 PRK13460 F0F1 ATP synthase sub 50.9 1.3E+02 0.0028 24.4 8.4 16 198-213 44-59 (173)
112 PF07271 Cytadhesin_P30: Cytad 49.8 37 0.0008 30.1 5.1 26 169-194 76-101 (279)
113 PRK07352 F0F1 ATP synthase sub 49.2 1.4E+02 0.0031 24.2 9.2 16 198-213 47-62 (174)
114 KOG4403|consensus 48.9 74 0.0016 30.3 7.1 35 162-196 208-245 (575)
115 PRK01844 hypothetical protein; 48.7 65 0.0014 22.7 5.2 30 166-195 3-32 (72)
116 PRK14473 F0F1 ATP synthase sub 47.7 1.4E+02 0.0031 23.8 8.8 22 167-188 9-30 (164)
117 PF09813 Coiled-coil_56: Coile 46.3 33 0.00072 25.7 3.7 39 171-209 51-89 (100)
118 PRK11677 hypothetical protein; 45.4 1.5E+02 0.0033 23.4 8.0 12 177-188 10-21 (134)
119 PRK06568 F0F1 ATP synthase sub 44.6 1.7E+02 0.0037 23.7 8.8 21 164-184 6-26 (154)
120 PF15145 DUF4577: Domain of un 43.5 55 0.0012 25.1 4.6 52 169-222 64-115 (128)
121 TIGR03321 alt_F1F0_F0_B altern 43.3 1.8E+02 0.0039 25.1 8.5 21 168-188 7-27 (246)
122 PRK00523 hypothetical protein; 42.6 1.2E+02 0.0026 21.4 6.0 28 167-194 5-32 (72)
123 PF07709 SRR: Seven Residue Re 42.0 25 0.00054 16.6 1.7 13 82-94 2-14 (14)
124 PRK13428 F0F1 ATP synthase sub 41.9 1.5E+02 0.0032 28.2 8.4 15 199-213 30-44 (445)
125 KOG4782|consensus 39.6 41 0.00089 25.0 3.2 43 169-214 60-102 (108)
126 COG3116 FtsL Cell division pro 38.8 1.7E+02 0.0037 22.1 8.2 14 231-244 84-97 (105)
127 PF13314 DUF4083: Domain of un 38.7 1.2E+02 0.0026 20.4 5.1 13 198-210 43-55 (58)
128 TIGR02596 Verrucomicrobium spi 38.5 1.1E+02 0.0024 25.8 6.2 51 172-222 6-56 (195)
129 TIGR01708 typeII_sec_gspH gene 38.3 1E+02 0.0023 23.9 5.8 26 196-221 35-60 (143)
130 PRK00888 ftsB cell division pr 38.1 1.7E+02 0.0037 21.9 6.9 7 222-228 53-59 (105)
131 PF06305 DUF1049: Protein of u 37.2 1.1E+02 0.0023 20.5 5.0 23 164-186 18-40 (68)
132 PRK10506 hypothetical protein; 37.1 1.1E+02 0.0023 24.7 5.8 55 167-221 11-65 (162)
133 KOG3442|consensus 36.4 46 0.001 26.0 3.3 33 42-74 61-93 (132)
134 PF00558 Vpu: Vpu protein; In 33.8 31 0.00068 24.9 1.8 20 204-223 37-56 (81)
135 PRK06569 F0F1 ATP synthase sub 33.8 2.6E+02 0.0056 22.7 8.5 12 167-178 15-26 (155)
136 PF02060 ISK_Channel: Slow vol 33.6 1.4E+02 0.0031 23.4 5.6 30 166-195 46-75 (129)
137 PRK14475 F0F1 ATP synthase sub 33.5 2.6E+02 0.0055 22.6 8.2 17 163-179 9-25 (167)
138 PRK13455 F0F1 ATP synthase sub 32.8 2.6E+02 0.0057 22.8 7.6 66 166-236 26-91 (184)
139 TIGR00985 3a0801s04tom mitocho 32.5 2.7E+02 0.0058 22.5 7.7 30 175-204 17-46 (148)
140 PF10883 DUF2681: Protein of u 31.9 2.1E+02 0.0044 21.0 8.2 12 177-188 12-23 (87)
141 PF04999 FtsL: Cell division p 31.2 2E+02 0.0044 20.7 7.7 29 200-228 48-76 (97)
142 PRK06568 F0F1 ATP synthase sub 31.0 2.8E+02 0.0061 22.4 7.2 19 196-214 30-48 (154)
143 KOG4007|consensus 31.0 33 0.00073 28.9 1.8 47 189-235 166-216 (229)
144 PF12434 Malate_DH: Malate deh 29.9 66 0.0014 18.3 2.3 18 53-70 9-26 (28)
145 PRK14472 F0F1 ATP synthase sub 29.0 3.1E+02 0.0068 22.2 8.9 12 167-178 23-34 (175)
146 cd01780 PLC_epsilon_RA Ubiquit 28.6 72 0.0016 23.6 3.0 36 38-73 9-44 (93)
147 PHA02844 putative transmembran 27.9 2.2E+02 0.0049 20.2 5.4 51 133-186 17-67 (75)
148 PF07960 CBP4: CBP4; InterPro 27.7 1.4E+02 0.003 23.5 4.7 18 198-215 36-53 (128)
149 KOG3312|consensus 27.5 22 0.00047 28.8 0.1 19 220-238 63-81 (186)
150 TIGR02743 TraW type-F conjugat 27.4 2.9E+02 0.0063 23.4 7.0 19 221-239 52-70 (202)
151 PHA02975 hypothetical protein; 27.1 2.2E+02 0.0048 19.8 5.3 47 133-186 17-63 (69)
152 PRK10920 putative uroporphyrin 26.3 4.7E+02 0.01 24.5 8.8 22 219-240 108-129 (390)
153 PF01277 Oleosin: Oleosin; In 26.1 2.7E+02 0.0059 21.5 6.0 26 196-221 90-115 (118)
154 COG3763 Uncharacterized protei 25.4 2.5E+02 0.0053 19.8 6.3 28 165-192 2-29 (71)
155 PF14002 YniB: YniB-like prote 25.4 2E+02 0.0043 23.6 5.3 25 163-188 71-95 (166)
156 PF06295 DUF1043: Protein of u 25.1 1.7E+02 0.0038 22.7 4.9 8 169-176 3-10 (128)
157 PF11446 DUF2897: Protein of u 24.9 1.5E+02 0.0033 19.7 3.9 19 169-187 6-24 (55)
158 COG0089 RplW Ribosomal protein 24.5 64 0.0014 24.0 2.2 21 45-65 25-45 (94)
159 PF15141 DUF4574: Domain of un 23.6 75 0.0016 23.1 2.3 26 169-194 7-32 (84)
160 PF03672 UPF0154: Uncharacteri 23.4 2.6E+02 0.0056 19.3 4.8 14 178-191 8-21 (64)
161 PF02216 B: B domain; InterPr 23.2 58 0.0013 21.6 1.5 32 39-73 10-41 (54)
162 COG2165 PulG Type II secretory 23.1 2.9E+02 0.0062 20.6 5.9 26 166-191 9-34 (149)
163 PRK13428 F0F1 ATP synthase sub 23.1 5.8E+02 0.013 24.2 8.9 7 170-176 9-15 (445)
164 TIGR02976 phageshock_pspB phag 22.7 2.9E+02 0.0062 19.6 5.9 9 225-233 50-58 (75)
165 PF06212 GRIM-19: GRIM-19 prot 21.6 4E+02 0.0088 20.9 8.3 31 163-193 28-58 (130)
166 PF12220 U1snRNP70_N: U1 small 21.4 71 0.0015 23.4 1.9 36 207-242 59-94 (94)
167 PF14853 Fis1_TPR_C: Fis1 C-te 21.3 2.5E+02 0.0053 18.3 5.0 36 185-222 18-53 (53)
168 COG3105 Uncharacterized protei 21.2 4.1E+02 0.009 21.0 6.1 18 197-214 48-65 (138)
169 PF10661 EssA: WXG100 protein 21.2 1.6E+02 0.0034 23.6 4.0 29 163-191 115-143 (145)
170 COG1377 FlhB Flagellar biosynt 21.0 3.6E+02 0.0078 25.1 6.8 41 198-238 219-261 (363)
171 PHA02650 hypothetical protein; 20.8 3.3E+02 0.0072 19.6 5.4 17 133-149 17-33 (81)
172 PRK14475 F0F1 ATP synthase sub 20.7 4.5E+02 0.0097 21.1 9.0 7 200-206 40-46 (167)
No 1
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=6.2e-25 Score=198.48 Aligned_cols=74 Identities=35% Similarity=0.662 Sum_probs=70.3
Q ss_pred CccCcccccccCCCCCHHHHHHHHHHHHHhhCCCCCCCChHHHHHHHHHHHHHHHcCChhHHHHHHhccccccc
Q psy5201 38 QDHTHYEILELERNCSPKEIRSAFIRLSKQFHPDKNPSNPALHDKFVKLNEAYSILNDMDRRRNYDASLNLQTV 111 (244)
Q Consensus 38 ~~~~~Y~iLgv~~~a~~~eIk~ay~~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~vL~dp~~R~~YD~~~~~~~~ 111 (244)
...|||+||||+++||.+|||+|||+||++||||+|+++++|+++|++|++||+|||||++|+.||++++....
T Consensus 2 ~~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g~~~AeeKFKEI~eAYEVLsD~eKRa~YD~fG~~~~~ 75 (371)
T COG0484 2 AKRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKRAAYDQFGHAGFK 75 (371)
T ss_pred CccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHhhccCccccc
Confidence 36799999999999999999999999999999999998999999999999999999999999999999988544
No 2
>KOG0713|consensus
Probab=99.89 E-value=1.2e-23 Score=185.97 Aligned_cols=72 Identities=36% Similarity=0.713 Sum_probs=69.1
Q ss_pred CCccCcccccccCCCCCHHHHHHHHHHHHHhhCCCCCCCChHHHHHHHHHHHHHHHcCChhHHHHHHhcccc
Q psy5201 37 GQDHTHYEILELERNCSPKEIRSAFIRLSKQFHPDKNPSNPALHDKFVKLNEAYSILNDMDRRRNYDASLNL 108 (244)
Q Consensus 37 ~~~~~~Y~iLgv~~~a~~~eIk~ay~~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~vL~dp~~R~~YD~~~~~ 108 (244)
...+|||+||||+++|+..|||+|||+||++||||+|+++|.|.+.|+.|+.||+|||||.+|+.||.+|..
T Consensus 13 ~~~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AYEVLsDpekRk~YD~~GEe 84 (336)
T KOG0713|consen 13 LAGRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAYEVLSDPEKRKHYDTYGEE 84 (336)
T ss_pred hcCCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHhhhHh
Confidence 346899999999999999999999999999999999999999999999999999999999999999999955
No 3
>KOG0717|consensus
Probab=99.88 E-value=8.7e-22 Score=179.45 Aligned_cols=185 Identities=19% Similarity=0.233 Sum_probs=115.1
Q ss_pred CCCCccCcccccccCCCCCHHHHHHHHHHHHHhhCCCCCCCC-hHHHHHHHHHHHHHHHcCChhHHHHHHhccccccccc
Q psy5201 35 SSGQDHTHYEILELERNCSPKEIRSAFIRLSKQFHPDKNPSN-PALHDKFVKLNEAYSILNDMDRRRNYDASLNLQTVRQ 113 (244)
Q Consensus 35 ~~~~~~~~Y~iLgv~~~a~~~eIk~ay~~l~~~~HPD~~~~~-~~~~~~f~~i~~Ay~vL~dp~~R~~YD~~~~~~~~~~ 113 (244)
.+....+||+||||.++|+..+||++||+||++||||+||+. .++.++|++|+.||+|||||..|++||.+........
T Consensus 3 ~~~~~~c~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeVLSdp~eR~wyd~hreqil~~~ 82 (508)
T KOG0717|consen 3 NPFKKRCYYEVLGVERDADDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVLSDPQERAWYDSHREQILRGK 82 (508)
T ss_pred CchhhhHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHHhcChHhhhhHHHHHHHHhcCC
Confidence 345678999999999999999999999999999999998865 7899999999999999999999999998886422222
Q ss_pred CccccCCCC--CCCC--CCCCCCCCchHHHHHHHH----hcccccc-------cccccccccccccchhHHHHHHHHHHH
Q psy5201 114 NMFVHKTRA--RSSY--SDSGERPENWKDYYDFAA----QMKRNES-------IHVPKFLHKFETLSKATLVMLLIGVAT 178 (244)
Q Consensus 114 ~~~~~~~~~--~~~~--~~~~~~~~~we~~~~~~~----~~~~~~~-------~~~p~~~~~~~~~s~~~~v~~~~~~~~ 178 (244)
...++-+.. -.++ ....+|..+-..||+++. ....++. .-.|.+ +.....++.++ .+..+|.
T Consensus 83 ~s~~~~~~~dlf~ff~~~~y~gy~~~~~gfy~vy~dvf~~~~~~e~~~~~d~~~~ap~f--g~~~t~ye~~~-~fY~~W~ 159 (508)
T KOG0717|consen 83 NSDTGVQIEDLFQFFTSSCYIGYENTSAGFYRVYQDVFNALASDELPFLGDSKLLYPLF--GYSTTDYEQVV-PFYQFWL 159 (508)
T ss_pred CCccccchHHHHHHhhhhhhcccccccchhHHHHHHHHHHHhhhhhhhccCCccccccc--cCCCCcHHHHH-HHHHHHH
Confidence 221111111 0000 012222222223333333 2222221 123333 55677788877 6666666
Q ss_pred HHHHHHHHHHhhhchhchhhhchhhHHHHHHHHHHHHHHhhhhhHHHH
Q psy5201 179 GALGLQILAVQYSKTFPRNVVNSREMEISQNLMNARNDAKKYDLQENI 226 (244)
Q Consensus 179 ~g~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~r~~ar~~~~~~q~ 226 (244)
.....-.+. .......++..++...+++++.-..+|..+.+++-
T Consensus 160 afsT~Ksf~----W~d~Ydv~~~~~r~~~R~v~~enkk~rq~ak~eyN 203 (508)
T KOG0717|consen 160 AFSTKKSFE----WLDEYDVEEESDRFTRRLMERENKKQRQYARQEYN 203 (508)
T ss_pred hhhhhhhHH----hhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 544333332 22223345566666666666666666655555543
No 4
>PRK14288 chaperone protein DnaJ; Provisional
Probab=99.83 E-value=9.9e-21 Score=173.75 Aligned_cols=70 Identities=33% Similarity=0.632 Sum_probs=66.4
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHhhCCCCCCCChHHHHHHHHHHHHHHHcCChhHHHHHHhcccc
Q psy5201 39 DHTHYEILELERNCSPKEIRSAFIRLSKQFHPDKNPSNPALHDKFVKLNEAYSILNDMDRRRNYDASLNL 108 (244)
Q Consensus 39 ~~~~Y~iLgv~~~a~~~eIk~ay~~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~vL~dp~~R~~YD~~~~~ 108 (244)
..|||+||||+++||.+|||+|||+||++||||++++++.++++|++|++||+||+||.+|+.||.++..
T Consensus 2 ~~dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~~~a~~~f~~i~~AYevLsd~~kR~~YD~~G~~ 71 (369)
T PRK14288 2 ELSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRALYDRYGKK 71 (369)
T ss_pred CCChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHhccHHHHHHHHHhccc
Confidence 3699999999999999999999999999999999987788999999999999999999999999998754
No 5
>KOG0712|consensus
Probab=99.81 E-value=4.1e-20 Score=165.20 Aligned_cols=70 Identities=33% Similarity=0.632 Sum_probs=65.6
Q ss_pred CccCcccccccCCCCCHHHHHHHHHHHHHhhCCCCCCCChHHHHHHHHHHHHHHHcCChhHHHHHHhcccccc
Q psy5201 38 QDHTHYEILELERNCSPKEIRSAFIRLSKQFHPDKNPSNPALHDKFVKLNEAYSILNDMDRRRNYDASLNLQT 110 (244)
Q Consensus 38 ~~~~~Y~iLgv~~~a~~~eIk~ay~~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~vL~dp~~R~~YD~~~~~~~ 110 (244)
....+|+||||+++||.+|||+|||+|+++||||+|++ +.++|++|++||+|||||++|+.||.++....
T Consensus 2 ~~~~~y~il~v~~~As~~eikkayrkla~k~HpDkn~~---~~ekfkei~~AyevLsd~ekr~~yD~~g~~~~ 71 (337)
T KOG0712|consen 2 KNTKLYDILGVSPDASEEEIKKAYRKLALKYHPDKNPD---AGEKFKEISQAYEVLSDPEKREIYDQYGEEGL 71 (337)
T ss_pred cccccceeeccCCCcCHHHHHHHHHHHHHHhCCCCCcc---HHHHHHHHHHHHHHhcCHHHHHHHHhhhhhhh
Confidence 35789999999999999999999999999999999994 78999999999999999999999999997644
No 6
>PRK14286 chaperone protein DnaJ; Provisional
Probab=99.80 E-value=1e-19 Score=167.19 Aligned_cols=70 Identities=36% Similarity=0.640 Sum_probs=66.5
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHhhCCCCCCCChHHHHHHHHHHHHHHHcCChhHHHHHHhcccc
Q psy5201 39 DHTHYEILELERNCSPKEIRSAFIRLSKQFHPDKNPSNPALHDKFVKLNEAYSILNDMDRRRNYDASLNL 108 (244)
Q Consensus 39 ~~~~Y~iLgv~~~a~~~eIk~ay~~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~vL~dp~~R~~YD~~~~~ 108 (244)
+.|||+||||+++|+.+|||+|||+|+++||||++++++.+.++|++|++||+||+||.+|+.||.++..
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~ 72 (372)
T PRK14286 3 ERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQAYDQFGKA 72 (372)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHHhCch
Confidence 4699999999999999999999999999999999987788999999999999999999999999998764
No 7
>PRK14296 chaperone protein DnaJ; Provisional
Probab=99.80 E-value=5e-20 Score=169.20 Aligned_cols=69 Identities=42% Similarity=0.712 Sum_probs=65.5
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHhhCCCCCCCChHHHHHHHHHHHHHHHcCChhHHHHHHhcccc
Q psy5201 39 DHTHYEILELERNCSPKEIRSAFIRLSKQFHPDKNPSNPALHDKFVKLNEAYSILNDMDRRRNYDASLNL 108 (244)
Q Consensus 39 ~~~~Y~iLgv~~~a~~~eIk~ay~~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~vL~dp~~R~~YD~~~~~ 108 (244)
..|||+||||+++|+.+|||+|||+||++||||+|+ ++.+.++|++|++||+|||||.+|+.||.++..
T Consensus 3 ~~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~-~~~a~~~F~~i~~AyevLsD~~KR~~YD~~G~~ 71 (372)
T PRK14296 3 KKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNK-SPDAHDKMVEINEAADVLLDKDKRKQYDQFGHA 71 (372)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCC-CchHHHHHHHHHHHHHHhcCHHHhhhhhhccch
Confidence 469999999999999999999999999999999997 678999999999999999999999999998754
No 8
>PRK14279 chaperone protein DnaJ; Provisional
Probab=99.80 E-value=5.6e-20 Score=169.99 Aligned_cols=69 Identities=32% Similarity=0.687 Sum_probs=66.1
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHhhCCCCCCCChHHHHHHHHHHHHHHHcCChhHHHHHHhccc
Q psy5201 39 DHTHYEILELERNCSPKEIRSAFIRLSKQFHPDKNPSNPALHDKFVKLNEAYSILNDMDRRRNYDASLN 107 (244)
Q Consensus 39 ~~~~Y~iLgv~~~a~~~eIk~ay~~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~vL~dp~~R~~YD~~~~ 107 (244)
..|||+||||+++|+.+|||+|||+|+++||||++++++.+.++|++|++||+|||||++|+.||.++.
T Consensus 8 ~~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsD~~KR~~YD~~G~ 76 (392)
T PRK14279 8 EKDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKRKEYDETRR 76 (392)
T ss_pred ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhcchhhhhHHHHhhh
Confidence 479999999999999999999999999999999998778899999999999999999999999999874
No 9
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=99.79 E-value=2.3e-19 Score=124.52 Aligned_cols=63 Identities=52% Similarity=0.886 Sum_probs=59.8
Q ss_pred CcccccccCCCCCHHHHHHHHHHHHHhhCCCCCCCCh-HHHHHHHHHHHHHHHcCChhHHHHHH
Q psy5201 41 THYEILELERNCSPKEIRSAFIRLSKQFHPDKNPSNP-ALHDKFVKLNEAYSILNDMDRRRNYD 103 (244)
Q Consensus 41 ~~Y~iLgv~~~a~~~eIk~ay~~l~~~~HPD~~~~~~-~~~~~f~~i~~Ay~vL~dp~~R~~YD 103 (244)
|||+||||+++++.++||++|+++++.+|||+++... .+.+.|..|++||++|+||.+|+.||
T Consensus 1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~~~R~~YD 64 (64)
T PF00226_consen 1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSDPERRRRYD 64 (64)
T ss_dssp HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred ChHHHCCCCCCCCHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCCHHHHHhcC
Confidence 6899999999999999999999999999999988554 68899999999999999999999998
No 10
>KOG0716|consensus
Probab=99.77 E-value=3.1e-19 Score=153.58 Aligned_cols=70 Identities=39% Similarity=0.682 Sum_probs=67.2
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHhhCCCCCCCChHHHHHHHHHHHHHHHcCChhHHHHHHhcccc
Q psy5201 39 DHTHYEILELERNCSPKEIRSAFIRLSKQFHPDKNPSNPALHDKFVKLNEAYSILNDMDRRRNYDASLNL 108 (244)
Q Consensus 39 ~~~~Y~iLgv~~~a~~~eIk~ay~~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~vL~dp~~R~~YD~~~~~ 108 (244)
..+.|+|||++++|+.++||++||+|+++||||+++++|++.+.|++||+||+||+||.+|..||.++..
T Consensus 30 ~~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~P~~~dkf~eIN~Ay~ILsD~~kR~~YD~~g~~ 99 (279)
T KOG0716|consen 30 RLDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDNPEATDKFKEINTAYAILSDPTKRNVYDEYGEL 99 (279)
T ss_pred hhHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcCCCCchhHHHHHHHHHHHHHhcChhhhhhHHHhhhH
Confidence 5689999999999999999999999999999999998899999999999999999999999999999755
No 11
>PRK14285 chaperone protein DnaJ; Provisional
Probab=99.77 E-value=4.7e-19 Score=162.45 Aligned_cols=69 Identities=35% Similarity=0.578 Sum_probs=66.1
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHhhCCCCCCCChHHHHHHHHHHHHHHHcCChhHHHHHHhcccc
Q psy5201 40 HTHYEILELERNCSPKEIRSAFIRLSKQFHPDKNPSNPALHDKFVKLNEAYSILNDMDRRRNYDASLNL 108 (244)
Q Consensus 40 ~~~Y~iLgv~~~a~~~eIk~ay~~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~vL~dp~~R~~YD~~~~~ 108 (244)
.|||+||||+++||.+|||+|||+|+++||||++++++.+.++|++|++||+||+||.+|..||.++..
T Consensus 3 ~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yd~~g~~ 71 (365)
T PRK14285 3 RDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKRAQYDRFGHT 71 (365)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHcCcchhHHHHhcCcc
Confidence 699999999999999999999999999999999987788999999999999999999999999998764
No 12
>PRK14282 chaperone protein DnaJ; Provisional
Probab=99.77 E-value=5.8e-19 Score=162.14 Aligned_cols=70 Identities=39% Similarity=0.686 Sum_probs=65.5
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHhhCCCCCCCC-hHHHHHHHHHHHHHHHcCChhHHHHHHhcccc
Q psy5201 39 DHTHYEILELERNCSPKEIRSAFIRLSKQFHPDKNPSN-PALHDKFVKLNEAYSILNDMDRRRNYDASLNL 108 (244)
Q Consensus 39 ~~~~Y~iLgv~~~a~~~eIk~ay~~l~~~~HPD~~~~~-~~~~~~f~~i~~Ay~vL~dp~~R~~YD~~~~~ 108 (244)
..|||+||||+++||.+|||+|||+|+++||||+++.+ +.+.++|++|++||+||+||.+|+.||.++..
T Consensus 3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~g~~ 73 (369)
T PRK14282 3 KKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRAMYDRFGYV 73 (369)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcChhhHHHHhhcCcc
Confidence 46999999999999999999999999999999999854 67889999999999999999999999998754
No 13
>KOG0691|consensus
Probab=99.77 E-value=5.6e-19 Score=156.24 Aligned_cols=70 Identities=36% Similarity=0.686 Sum_probs=68.5
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHhhCCCCCCCChHHHHHHHHHHHHHHHcCChhHHHHHHhcccc
Q psy5201 39 DHTHYEILELERNCSPKEIRSAFIRLSKQFHPDKNPSNPALHDKFVKLNEAYSILNDMDRRRNYDASLNL 108 (244)
Q Consensus 39 ~~~~Y~iLgv~~~a~~~eIk~ay~~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~vL~dp~~R~~YD~~~~~ 108 (244)
..|||+||||+.+|+..+|++||+..+++||||+||++|.|.++|+.+.+||+||+|+..|..||..+..
T Consensus 4 ~~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~dP~A~ekFq~L~eAy~VL~D~~~R~~YDk~~k~ 73 (296)
T KOG0691|consen 4 DTDYYDLLGISEDATDAEIKKAYRKKALQYHPDKNPGDPQAAEKFQELSEAYEVLSDEESRAAYDKLRKS 73 (296)
T ss_pred cchHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhh
Confidence 6899999999999999999999999999999999999999999999999999999999999999999977
No 14
>PRK14277 chaperone protein DnaJ; Provisional
Probab=99.77 E-value=6.8e-19 Score=162.53 Aligned_cols=70 Identities=41% Similarity=0.729 Sum_probs=66.4
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHhhCCCCCCCChHHHHHHHHHHHHHHHcCChhHHHHHHhcccc
Q psy5201 39 DHTHYEILELERNCSPKEIRSAFIRLSKQFHPDKNPSNPALHDKFVKLNEAYSILNDMDRRRNYDASLNL 108 (244)
Q Consensus 39 ~~~~Y~iLgv~~~a~~~eIk~ay~~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~vL~dp~~R~~YD~~~~~ 108 (244)
..|||+||||+++||.+|||+|||+|+++||||++++++.++++|++|++||+||+||.+|+.||.++..
T Consensus 4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~ 73 (386)
T PRK14277 4 KKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRAQYDQFGHA 73 (386)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHhhccc
Confidence 4699999999999999999999999999999999987788999999999999999999999999998754
No 15
>PRK14287 chaperone protein DnaJ; Provisional
Probab=99.76 E-value=8.2e-19 Score=161.19 Aligned_cols=69 Identities=35% Similarity=0.669 Sum_probs=65.2
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHhhCCCCCCCChHHHHHHHHHHHHHHHcCChhHHHHHHhcccc
Q psy5201 39 DHTHYEILELERNCSPKEIRSAFIRLSKQFHPDKNPSNPALHDKFVKLNEAYSILNDMDRRRNYDASLNL 108 (244)
Q Consensus 39 ~~~~Y~iLgv~~~a~~~eIk~ay~~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~vL~dp~~R~~YD~~~~~ 108 (244)
..|||+||||+++||.+|||+|||+|+++||||+|+ +++++++|++|++||+||+||.+|+.||.++..
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~-~~~~~~~f~~i~~Ay~~L~d~~kR~~YD~~G~~ 71 (371)
T PRK14287 3 KRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNK-APDAEDKFKEVKEAYDTLSDPQKKAHYDQFGHT 71 (371)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCC-ChhHHHHHHHHHHHHHHhCcHhHHHHHHhhCCc
Confidence 469999999999999999999999999999999997 578899999999999999999999999998864
No 16
>PRK14295 chaperone protein DnaJ; Provisional
Probab=99.76 E-value=1.1e-18 Score=161.27 Aligned_cols=66 Identities=29% Similarity=0.727 Sum_probs=63.6
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHhhCCCCCCCChHHHHHHHHHHHHHHHcCChhHHHHHHh
Q psy5201 39 DHTHYEILELERNCSPKEIRSAFIRLSKQFHPDKNPSNPALHDKFVKLNEAYSILNDMDRRRNYDA 104 (244)
Q Consensus 39 ~~~~Y~iLgv~~~a~~~eIk~ay~~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~vL~dp~~R~~YD~ 104 (244)
..|||+||||+++|+.+|||+|||+|+++||||++++++.++++|++|++||+||+||.+|+.||.
T Consensus 8 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~ 73 (389)
T PRK14295 8 EKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKRKEYDE 73 (389)
T ss_pred ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchhHHHHHHHHHHHHHHHCchhhHHHHHH
Confidence 469999999999999999999999999999999998777899999999999999999999999998
No 17
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=99.76 E-value=8.2e-19 Score=163.18 Aligned_cols=71 Identities=31% Similarity=0.627 Sum_probs=64.2
Q ss_pred CCCCCccCcccccccCCCCCHHHHHHHHHHHHHhhCCCCCCCChHHHHHHHHHHHHHHHcCChhHHHHHHhcccc
Q psy5201 34 YSSGQDHTHYEILELERNCSPKEIRSAFIRLSKQFHPDKNPSNPALHDKFVKLNEAYSILNDMDRRRNYDASLNL 108 (244)
Q Consensus 34 ~~~~~~~~~Y~iLgv~~~a~~~eIk~ay~~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~vL~dp~~R~~YD~~~~~ 108 (244)
+......|||+||||+++||.+|||+|||+||++||||+++ + .++|++|++||+||+||.+|+.||.++..
T Consensus 22 ~~~~~~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~-~---~e~F~~i~~AYevLsD~~kR~~YD~~G~~ 92 (421)
T PTZ00037 22 KREVDNEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGG-D---PEKFKEISRAYEVLSDPEKRKIYDEYGEE 92 (421)
T ss_pred cccccchhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCc-h---HHHHHHHHHHHHHhccHHHHHHHhhhcch
Confidence 34445789999999999999999999999999999999986 3 48999999999999999999999998754
No 18
>PRK14294 chaperone protein DnaJ; Provisional
Probab=99.76 E-value=1.2e-18 Score=159.97 Aligned_cols=70 Identities=33% Similarity=0.613 Sum_probs=66.5
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHhhCCCCCCCChHHHHHHHHHHHHHHHcCChhHHHHHHhcccc
Q psy5201 39 DHTHYEILELERNCSPKEIRSAFIRLSKQFHPDKNPSNPALHDKFVKLNEAYSILNDMDRRRNYDASLNL 108 (244)
Q Consensus 39 ~~~~Y~iLgv~~~a~~~eIk~ay~~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~vL~dp~~R~~YD~~~~~ 108 (244)
..|||+||||+++|+.+|||+|||+|+++||||++++++.+.++|+.|++||+||+||.+|+.||.++..
T Consensus 3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~~f~~~~~Ay~vL~d~~~r~~yD~~G~~ 72 (366)
T PRK14294 3 KRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRGIYDQYGHE 72 (366)
T ss_pred CCChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHhhccc
Confidence 4799999999999999999999999999999999987788999999999999999999999999998854
No 19
>PRK14299 chaperone protein DnaJ; Provisional
Probab=99.76 E-value=1.1e-18 Score=155.51 Aligned_cols=69 Identities=39% Similarity=0.709 Sum_probs=65.5
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHhhCCCCCCCChHHHHHHHHHHHHHHHcCChhHHHHHHhcccc
Q psy5201 39 DHTHYEILELERNCSPKEIRSAFIRLSKQFHPDKNPSNPALHDKFVKLNEAYSILNDMDRRRNYDASLNL 108 (244)
Q Consensus 39 ~~~~Y~iLgv~~~a~~~eIk~ay~~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~vL~dp~~R~~YD~~~~~ 108 (244)
..|||+||||+++||.+|||+|||+|+++||||+++ ++.+.++|++|++||+||+||.+|+.||.++..
T Consensus 3 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~-~~~~~~~f~~i~~Ay~~L~d~~kr~~yD~~g~~ 71 (291)
T PRK14299 3 YKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNK-SPGAEEKFKEINEAYTVLSDPEKRRIYDTYGTT 71 (291)
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCC-ChhHHHHHHHHHHHHHHhcCHHHHHHHHhcCCc
Confidence 369999999999999999999999999999999997 678999999999999999999999999998765
No 20
>PRK14276 chaperone protein DnaJ; Provisional
Probab=99.76 E-value=9.6e-19 Score=161.23 Aligned_cols=69 Identities=33% Similarity=0.619 Sum_probs=65.4
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHhhCCCCCCCChHHHHHHHHHHHHHHHcCChhHHHHHHhcccc
Q psy5201 39 DHTHYEILELERNCSPKEIRSAFIRLSKQFHPDKNPSNPALHDKFVKLNEAYSILNDMDRRRNYDASLNL 108 (244)
Q Consensus 39 ~~~~Y~iLgv~~~a~~~eIk~ay~~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~vL~dp~~R~~YD~~~~~ 108 (244)
..|||+||||+++||.+|||+|||+|+++||||+++ ++.+.++|++|++||+||+||.+|+.||.++..
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~-~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~ 71 (380)
T PRK14276 3 NTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINK-EPGAEEKYKEVQEAYETLSDPQKRAAYDQYGAA 71 (380)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCC-CcCHHHHHHHHHHHHHHhcCHhhhhhHhhcCCc
Confidence 469999999999999999999999999999999998 678899999999999999999999999998864
No 21
>PRK14283 chaperone protein DnaJ; Provisional
Probab=99.76 E-value=1.1e-18 Score=160.73 Aligned_cols=69 Identities=33% Similarity=0.679 Sum_probs=65.5
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHhhCCCCCCCChHHHHHHHHHHHHHHHcCChhHHHHHHhcccc
Q psy5201 39 DHTHYEILELERNCSPKEIRSAFIRLSKQFHPDKNPSNPALHDKFVKLNEAYSILNDMDRRRNYDASLNL 108 (244)
Q Consensus 39 ~~~~Y~iLgv~~~a~~~eIk~ay~~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~vL~dp~~R~~YD~~~~~ 108 (244)
..|||+||||+++|+.+|||+||++|+++||||+|+ ++.+.++|++|++||+||+||.+|+.||.++..
T Consensus 4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~-~~~a~~~f~~i~~Ay~~Lsd~~kR~~YD~~G~~ 72 (378)
T PRK14283 4 KRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSE-EEGAEEKFKEISEAYAVLSDDEKRQRYDQFGHA 72 (378)
T ss_pred cCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCC-CccHHHHHHHHHHHHHHhchhHHHHHHhhhccc
Confidence 579999999999999999999999999999999998 578999999999999999999999999998754
No 22
>PRK14298 chaperone protein DnaJ; Provisional
Probab=99.76 E-value=9.5e-19 Score=161.05 Aligned_cols=69 Identities=36% Similarity=0.704 Sum_probs=65.2
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHhhCCCCCCCChHHHHHHHHHHHHHHHcCChhHHHHHHhcccc
Q psy5201 39 DHTHYEILELERNCSPKEIRSAFIRLSKQFHPDKNPSNPALHDKFVKLNEAYSILNDMDRRRNYDASLNL 108 (244)
Q Consensus 39 ~~~~Y~iLgv~~~a~~~eIk~ay~~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~vL~dp~~R~~YD~~~~~ 108 (244)
..|||+||||+++|+.+|||+||++|+++||||+++ ++.+.++|++|++||+||+||.+|+.||.++..
T Consensus 4 ~~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~-~~~~~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~ 72 (377)
T PRK14298 4 TRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNK-EPDAEEKFKEISEAYAVLSDAEKRAQYDRFGHA 72 (377)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccC-ChhHHHHHHHHHHHHHHhcchHhhhhhhhcCcc
Confidence 469999999999999999999999999999999997 678899999999999999999999999998854
No 23
>PRK14301 chaperone protein DnaJ; Provisional
Probab=99.76 E-value=1e-18 Score=160.62 Aligned_cols=70 Identities=39% Similarity=0.715 Sum_probs=66.4
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHhhCCCCCCCChHHHHHHHHHHHHHHHcCChhHHHHHHhcccc
Q psy5201 39 DHTHYEILELERNCSPKEIRSAFIRLSKQFHPDKNPSNPALHDKFVKLNEAYSILNDMDRRRNYDASLNL 108 (244)
Q Consensus 39 ~~~~Y~iLgv~~~a~~~eIk~ay~~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~vL~dp~~R~~YD~~~~~ 108 (244)
..|||+||||+++||.++||+|||+|+++||||++++++.++++|++|++||+||+||.+|+.||.++..
T Consensus 3 ~~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~g~~ 72 (373)
T PRK14301 3 QRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKRARYDRFGHA 72 (373)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCChHHHHHHHHHHHHHHHhcchhhhhhhhhcccc
Confidence 4699999999999999999999999999999999987788999999999999999999999999998764
No 24
>PRK14284 chaperone protein DnaJ; Provisional
Probab=99.75 E-value=1.4e-18 Score=160.79 Aligned_cols=69 Identities=35% Similarity=0.685 Sum_probs=65.8
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHhhCCCCCCCChHHHHHHHHHHHHHHHcCChhHHHHHHhcccc
Q psy5201 40 HTHYEILELERNCSPKEIRSAFIRLSKQFHPDKNPSNPALHDKFVKLNEAYSILNDMDRRRNYDASLNL 108 (244)
Q Consensus 40 ~~~Y~iLgv~~~a~~~eIk~ay~~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~vL~dp~~R~~YD~~~~~ 108 (244)
.|||+||||+++||.+|||+|||+|+++||||++++++.+.++|++|++||+||+||.+|+.||.++..
T Consensus 1 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~ 69 (391)
T PRK14284 1 MDYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRESYDRYGKD 69 (391)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHhcccc
Confidence 389999999999999999999999999999999997788999999999999999999999999998864
No 25
>PRK14297 chaperone protein DnaJ; Provisional
Probab=99.75 E-value=1.1e-18 Score=160.97 Aligned_cols=70 Identities=39% Similarity=0.672 Sum_probs=66.4
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHhhCCCCCCCChHHHHHHHHHHHHHHHcCChhHHHHHHhcccc
Q psy5201 39 DHTHYEILELERNCSPKEIRSAFIRLSKQFHPDKNPSNPALHDKFVKLNEAYSILNDMDRRRNYDASLNL 108 (244)
Q Consensus 39 ~~~~Y~iLgv~~~a~~~eIk~ay~~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~vL~dp~~R~~YD~~~~~ 108 (244)
..|||+||||+++|+.+|||+|||+|+++||||++++++.++++|++|++||+||+||.+|+.||.++..
T Consensus 3 ~~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~G~~ 72 (380)
T PRK14297 3 SKDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKKAQYDQFGTA 72 (380)
T ss_pred CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcCHhhhCchhhcCcc
Confidence 3699999999999999999999999999999999987788999999999999999999999999998754
No 26
>PRK14291 chaperone protein DnaJ; Provisional
Probab=99.75 E-value=1.3e-18 Score=160.49 Aligned_cols=69 Identities=41% Similarity=0.737 Sum_probs=65.3
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHhhCCCCCCCChHHHHHHHHHHHHHHHcCChhHHHHHHhcccc
Q psy5201 39 DHTHYEILELERNCSPKEIRSAFIRLSKQFHPDKNPSNPALHDKFVKLNEAYSILNDMDRRRNYDASLNL 108 (244)
Q Consensus 39 ~~~~Y~iLgv~~~a~~~eIk~ay~~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~vL~dp~~R~~YD~~~~~ 108 (244)
..|||+||||+++|+.++||+|||+|+++||||+|+ ++.+.++|++|++||+||+||.+|+.||.++..
T Consensus 2 ~~d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~-~~~~~~~f~~i~~Ay~vLsd~~kR~~YD~~g~~ 70 (382)
T PRK14291 2 KKDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNK-NPEAEEKFKEINEAYQVLSDPEKRKLYDQFGHA 70 (382)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCC-CccHHHHHHHHHHHHHHhcCHHHHHHHhhhccc
Confidence 469999999999999999999999999999999998 578899999999999999999999999998864
No 27
>PRK14278 chaperone protein DnaJ; Provisional
Probab=99.75 E-value=1.3e-18 Score=160.21 Aligned_cols=68 Identities=34% Similarity=0.627 Sum_probs=64.8
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHhhCCCCCCCChHHHHHHHHHHHHHHHcCChhHHHHHHhcccc
Q psy5201 40 HTHYEILELERNCSPKEIRSAFIRLSKQFHPDKNPSNPALHDKFVKLNEAYSILNDMDRRRNYDASLNL 108 (244)
Q Consensus 40 ~~~Y~iLgv~~~a~~~eIk~ay~~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~vL~dp~~R~~YD~~~~~ 108 (244)
.|||+||||+++|+.+|||+|||+|+++||||+++ ++.+.++|++|++||+||+||.+|+.||.++..
T Consensus 3 ~d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~-~~~a~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~ 70 (378)
T PRK14278 3 RDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNP-DEEAQEKFKEISVAYEVLSDPEKRRIVDLGGDP 70 (378)
T ss_pred CCcceecCCCCCCCHHHHHHHHHHHHHHHCCCCCC-cHHHHHHHHHHHHHHHHhchhhhhhhhhccCCc
Confidence 69999999999999999999999999999999998 778999999999999999999999999998754
No 28
>PRK10767 chaperone protein DnaJ; Provisional
Probab=99.75 E-value=2.2e-18 Score=158.46 Aligned_cols=70 Identities=36% Similarity=0.693 Sum_probs=66.3
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHhhCCCCCCCChHHHHHHHHHHHHHHHcCChhHHHHHHhcccc
Q psy5201 39 DHTHYEILELERNCSPKEIRSAFIRLSKQFHPDKNPSNPALHDKFVKLNEAYSILNDMDRRRNYDASLNL 108 (244)
Q Consensus 39 ~~~~Y~iLgv~~~a~~~eIk~ay~~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~vL~dp~~R~~YD~~~~~ 108 (244)
..|||+||||+++||.+|||+||++|+++||||++++++.+.++|++|++||+||+||.+|..||.++..
T Consensus 3 ~~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~ 72 (371)
T PRK10767 3 KRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKRAAYDQYGHA 72 (371)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcHHHHHHHHHHHHHHHHhcchhhhhHhhhcccc
Confidence 4699999999999999999999999999999999987788999999999999999999999999998754
No 29
>PRK14280 chaperone protein DnaJ; Provisional
Probab=99.75 E-value=2.1e-18 Score=158.73 Aligned_cols=69 Identities=35% Similarity=0.637 Sum_probs=65.2
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHhhCCCCCCCChHHHHHHHHHHHHHHHcCChhHHHHHHhcccc
Q psy5201 39 DHTHYEILELERNCSPKEIRSAFIRLSKQFHPDKNPSNPALHDKFVKLNEAYSILNDMDRRRNYDASLNL 108 (244)
Q Consensus 39 ~~~~Y~iLgv~~~a~~~eIk~ay~~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~vL~dp~~R~~YD~~~~~ 108 (244)
..|||+||||+++|+.+|||+||++|+++||||+++ ++.+.++|++|++||+||+||.+|+.||.++..
T Consensus 3 ~~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~-~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~ 71 (376)
T PRK14280 3 KRDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINK-EEGADEKFKEISEAYEVLSDDQKRAQYDQFGHA 71 (376)
T ss_pred CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCC-CccHHHHHHHHHHHHHHhccHhHHHHHHhcCcc
Confidence 369999999999999999999999999999999998 677899999999999999999999999998754
No 30
>PRK14281 chaperone protein DnaJ; Provisional
Probab=99.74 E-value=2.1e-18 Score=159.83 Aligned_cols=69 Identities=38% Similarity=0.710 Sum_probs=65.8
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHhhCCCCCCCChHHHHHHHHHHHHHHHcCChhHHHHHHhcccc
Q psy5201 40 HTHYEILELERNCSPKEIRSAFIRLSKQFHPDKNPSNPALHDKFVKLNEAYSILNDMDRRRNYDASLNL 108 (244)
Q Consensus 40 ~~~Y~iLgv~~~a~~~eIk~ay~~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~vL~dp~~R~~YD~~~~~ 108 (244)
.|||+||||+++|+.+|||+|||+|+++||||++++++.+.++|++|++||+||+||.+|+.||.++..
T Consensus 3 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~g~~ 71 (397)
T PRK14281 3 RDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKRRRYDQFGHA 71 (397)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhccch
Confidence 699999999999999999999999999999999987788899999999999999999999999998764
No 31
>KOG0715|consensus
Probab=99.74 E-value=2.8e-18 Score=152.40 Aligned_cols=68 Identities=40% Similarity=0.665 Sum_probs=65.6
Q ss_pred CcccccccCCCCCHHHHHHHHHHHHHhhCCCCCCCChHHHHHHHHHHHHHHHcCChhHHHHHHhccccc
Q psy5201 41 THYEILELERNCSPKEIRSAFIRLSKQFHPDKNPSNPALHDKFVKLNEAYSILNDMDRRRNYDASLNLQ 109 (244)
Q Consensus 41 ~~Y~iLgv~~~a~~~eIk~ay~~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~vL~dp~~R~~YD~~~~~~ 109 (244)
|||+||||+++|+..|||+||++|+|+||||.+. ++++.++|++|.+||+||+|+++|..||..+...
T Consensus 44 d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~-~~~a~~kF~eI~~AYEiLsd~eKR~~YD~~~~~~ 111 (288)
T KOG0715|consen 44 DYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNK-DKEASKKFKEISEAYEILSDEEKRQEYDVYGLEQ 111 (288)
T ss_pred chhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCC-CcchhhHHHHHHHHHHHhcCHHHHHHHHHhhhhc
Confidence 9999999999999999999999999999999998 6699999999999999999999999999999874
No 32
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional
Probab=99.72 E-value=5.2e-17 Score=159.81 Aligned_cols=71 Identities=32% Similarity=0.508 Sum_probs=66.2
Q ss_pred CCccCcccccccCCCCCHHHHHHHHHHHHHhhCCCCCCCChHHHHHHHHHHHHHHHcCChhHHHHHHhcccc
Q psy5201 37 GQDHTHYEILELERNCSPKEIRSAFIRLSKQFHPDKNPSNPALHDKFVKLNEAYSILNDMDRRRNYDASLNL 108 (244)
Q Consensus 37 ~~~~~~Y~iLgv~~~a~~~eIk~ay~~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~vL~dp~~R~~YD~~~~~ 108 (244)
..+.+||+||||+++|+..+||+|||+||++||||++++ +.+.++|+.|++||+|||||.+|+.||.+|..
T Consensus 570 ~~d~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~-~~A~ekFq~I~EAYeVLSDp~kRk~YD~~G~~ 640 (1136)
T PTZ00341 570 IPDTLFYDILGVGVNADMKEISERYFKLAENYYPPKRSG-NEGFHKFKKINEAYQILGDIDKKKMYNKFGYD 640 (1136)
T ss_pred CCCCChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-chHHHHHHHHHHHHHHhCCHHHHHHHhhcccc
Confidence 346899999999999999999999999999999999985 46888999999999999999999999998765
No 33
>PRK14289 chaperone protein DnaJ; Provisional
Probab=99.72 E-value=9e-18 Score=155.15 Aligned_cols=70 Identities=34% Similarity=0.630 Sum_probs=66.6
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHhhCCCCCCCChHHHHHHHHHHHHHHHcCChhHHHHHHhcccc
Q psy5201 39 DHTHYEILELERNCSPKEIRSAFIRLSKQFHPDKNPSNPALHDKFVKLNEAYSILNDMDRRRNYDASLNL 108 (244)
Q Consensus 39 ~~~~Y~iLgv~~~a~~~eIk~ay~~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~vL~dp~~R~~YD~~~~~ 108 (244)
..|||+||||+++|+.+|||+||++|+++||||++++++.+.++|++|++||+||+||.+|+.||.++..
T Consensus 4 ~~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yD~~G~~ 73 (386)
T PRK14289 4 KRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDKRSRYDQFGHA 73 (386)
T ss_pred cCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHhccc
Confidence 4799999999999999999999999999999999987788999999999999999999999999998754
No 34
>PRK14290 chaperone protein DnaJ; Provisional
Probab=99.72 E-value=8.9e-18 Score=154.10 Aligned_cols=69 Identities=39% Similarity=0.750 Sum_probs=64.9
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHhhCCCCCCCCh-HHHHHHHHHHHHHHHcCChhHHHHHHhcccc
Q psy5201 40 HTHYEILELERNCSPKEIRSAFIRLSKQFHPDKNPSNP-ALHDKFVKLNEAYSILNDMDRRRNYDASLNL 108 (244)
Q Consensus 40 ~~~Y~iLgv~~~a~~~eIk~ay~~l~~~~HPD~~~~~~-~~~~~f~~i~~Ay~vL~dp~~R~~YD~~~~~ 108 (244)
.|||+||||+++|+.+|||+|||+|+++||||++++++ .+.++|++|++||+||+||.+|+.||.++..
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~G~~ 72 (365)
T PRK14290 3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRRQYDQTGTV 72 (365)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcChhhhhhhcccCCc
Confidence 69999999999999999999999999999999998654 7899999999999999999999999998754
No 35
>KOG0721|consensus
Probab=99.71 E-value=3.5e-17 Score=136.88 Aligned_cols=72 Identities=38% Similarity=0.582 Sum_probs=66.7
Q ss_pred CCccCcccccccCCCCCHHHHHHHHHHHHHhhCCCCCCCChHHHHHHHHHHHHHHHcCChhHHHHHHhcccc
Q psy5201 37 GQDHTHYEILELERNCSPKEIRSAFIRLSKQFHPDKNPSNPALHDKFVKLNEAYSILNDMDRRRNYDASLNL 108 (244)
Q Consensus 37 ~~~~~~Y~iLgv~~~a~~~eIk~ay~~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~vL~dp~~R~~YD~~~~~ 108 (244)
....||||||||+++++..|||+|||+|+++||||+++...+.++.|..|++||+.|+|+..|+.|..+++.
T Consensus 96 ~~~fDPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~~~~e~~~~~I~KAY~aLTD~~sreN~ekYG~P 167 (230)
T KOG0721|consen 96 RQKFDPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPEEGDEEFFEAIAKAYQALTDKKSRENWEKYGNP 167 (230)
T ss_pred hhcCCcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCcchhHHHHHHHHHHHHHhcchhhHHHHHHhCCC
Confidence 556899999999999999999999999999999999985567788899999999999999999999998866
No 36
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=99.70 E-value=1.5e-17 Score=152.04 Aligned_cols=67 Identities=37% Similarity=0.713 Sum_probs=63.8
Q ss_pred CcccccccCCCCCHHHHHHHHHHHHHhhCCCCCCCChHHHHHHHHHHHHHHHcCChhHHHHHHhcccc
Q psy5201 41 THYEILELERNCSPKEIRSAFIRLSKQFHPDKNPSNPALHDKFVKLNEAYSILNDMDRRRNYDASLNL 108 (244)
Q Consensus 41 ~~Y~iLgv~~~a~~~eIk~ay~~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~vL~dp~~R~~YD~~~~~ 108 (244)
|||+||||+++|+.++||+||++|+++||||+++ ++.+.++|++|++||+||+||.+|..||.++..
T Consensus 1 d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~-~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~ 67 (354)
T TIGR02349 1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNK-DKEAEEKFKEINEAYEVLSDPEKRAQYDQFGHA 67 (354)
T ss_pred ChHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCC-CccHHHHHHHHHHHHHHhhChHHHHhhhhcccc
Confidence 7999999999999999999999999999999997 677899999999999999999999999998754
No 37
>PRK14300 chaperone protein DnaJ; Provisional
Probab=99.70 E-value=1.5e-17 Score=152.87 Aligned_cols=68 Identities=31% Similarity=0.608 Sum_probs=64.4
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHhhCCCCCCCChHHHHHHHHHHHHHHHcCChhHHHHHHhcccc
Q psy5201 40 HTHYEILELERNCSPKEIRSAFIRLSKQFHPDKNPSNPALHDKFVKLNEAYSILNDMDRRRNYDASLNL 108 (244)
Q Consensus 40 ~~~Y~iLgv~~~a~~~eIk~ay~~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~vL~dp~~R~~YD~~~~~ 108 (244)
.|||+||||+++||.+|||+||++|+++||||+++ ++.+.++|++|++||+||+||.+|+.||.++..
T Consensus 3 ~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~-~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~ 70 (372)
T PRK14300 3 QDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTD-AKDAEKKFKEINAAYDVLKDEQKRAAYDRFGHD 70 (372)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCC-CcCHHHHHHHHHHHHHHhhhHhHhhHHHhcccc
Confidence 69999999999999999999999999999999997 667889999999999999999999999998754
No 38
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=99.70 E-value=3.1e-17 Score=112.11 Aligned_cols=58 Identities=41% Similarity=0.757 Sum_probs=54.6
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHhhCCCCCCC-ChHHHHHHHHHHHHHHHcCChh
Q psy5201 40 HTHYEILELERNCSPKEIRSAFIRLSKQFHPDKNPS-NPALHDKFVKLNEAYSILNDMD 97 (244)
Q Consensus 40 ~~~Y~iLgv~~~a~~~eIk~ay~~l~~~~HPD~~~~-~~~~~~~f~~i~~Ay~vL~dp~ 97 (244)
.|||+||||+++++.++||++|+++++++|||++++ .+.+.+.|..|++||++|+||.
T Consensus 1 ~~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~~~ 59 (60)
T smart00271 1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPE 59 (60)
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcCCC
Confidence 489999999999999999999999999999999986 5778899999999999999985
No 39
>PRK14293 chaperone protein DnaJ; Provisional
Probab=99.70 E-value=2.3e-17 Score=151.80 Aligned_cols=68 Identities=35% Similarity=0.685 Sum_probs=64.4
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHhhCCCCCCCChHHHHHHHHHHHHHHHcCChhHHHHHHhcccc
Q psy5201 40 HTHYEILELERNCSPKEIRSAFIRLSKQFHPDKNPSNPALHDKFVKLNEAYSILNDMDRRRNYDASLNL 108 (244)
Q Consensus 40 ~~~Y~iLgv~~~a~~~eIk~ay~~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~vL~dp~~R~~YD~~~~~ 108 (244)
.|||+||||+++|+.+|||+||++|+++||||+++ ++.+.++|+.|++||+||+||.+|+.||.++..
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~-~~~a~~~f~~i~~Ay~vL~~~~~R~~yd~~g~~ 70 (374)
T PRK14293 3 ADYYEILGVSRDADKDELKRAYRRLARKYHPDVNK-EPGAEDRFKEINRAYEVLSDPETRARYDQFGEA 70 (374)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCC-CcCHHHHHHHHHHHHHHHhchHHHHHHhhcccc
Confidence 69999999999999999999999999999999998 577899999999999999999999999998754
No 40
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=99.70 E-value=2.4e-17 Score=147.93 Aligned_cols=67 Identities=30% Similarity=0.606 Sum_probs=63.7
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHhhCCCCCCCChHHHHHHHHHHHHHHHcCChhHHHHHHhccc
Q psy5201 40 HTHYEILELERNCSPKEIRSAFIRLSKQFHPDKNPSNPALHDKFVKLNEAYSILNDMDRRRNYDASLN 107 (244)
Q Consensus 40 ~~~Y~iLgv~~~a~~~eIk~ay~~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~vL~dp~~R~~YD~~~~ 107 (244)
.|||+||||+++|+.+|||+||++|+++||||+++ ++.+.++|++|++||+||+||.+|+.||.++.
T Consensus 4 ~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~-~~~~~~~f~~i~~Ay~~L~~~~kr~~yD~~g~ 70 (306)
T PRK10266 4 KDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSK-EPDAEARFKEVAEAWEVLSDEQRRAEYDQLWQ 70 (306)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCC-CccHHHHHHHHHHHHHHhhhHHHHHHHHHhhc
Confidence 69999999999999999999999999999999987 56899999999999999999999999999764
No 41
>PRK14292 chaperone protein DnaJ; Provisional
Probab=99.70 E-value=2.4e-17 Score=151.53 Aligned_cols=68 Identities=37% Similarity=0.687 Sum_probs=64.7
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHhhCCCCCCCChHHHHHHHHHHHHHHHcCChhHHHHHHhcccc
Q psy5201 40 HTHYEILELERNCSPKEIRSAFIRLSKQFHPDKNPSNPALHDKFVKLNEAYSILNDMDRRRNYDASLNL 108 (244)
Q Consensus 40 ~~~Y~iLgv~~~a~~~eIk~ay~~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~vL~dp~~R~~YD~~~~~ 108 (244)
.|||+||||+++|+.++||+||++|+++||||+++ ++.+.++|+.|++||+||+||.+|+.||.++..
T Consensus 2 ~d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~-~~~a~~~~~~i~~Ay~vL~d~~~r~~yd~~G~~ 69 (371)
T PRK14292 2 MDYYELLGVSRTASADEIKSAYRKLALKYHPDRNK-EKGAAEKFAQINEAYAVLSDAEKRAHYDRFGTA 69 (371)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCC-ChhHHHHHHHHHHHHHHhcchhhhhhHhhcCCc
Confidence 48999999999999999999999999999999998 678999999999999999999999999998764
No 42
>KOG0719|consensus
Probab=99.70 E-value=3.2e-17 Score=138.29 Aligned_cols=72 Identities=38% Similarity=0.647 Sum_probs=66.1
Q ss_pred CCccCcccccccCCCCCHHHHHHHHHHHHHhhCCCCCC--CChHHHHHHHHHHHHHHHcCChhHHHHHHhcccc
Q psy5201 37 GQDHTHYEILELERNCSPKEIRSAFIRLSKQFHPDKNP--SNPALHDKFVKLNEAYSILNDMDRRRNYDASLNL 108 (244)
Q Consensus 37 ~~~~~~Y~iLgv~~~a~~~eIk~ay~~l~~~~HPD~~~--~~~~~~~~f~~i~~Ay~vL~dp~~R~~YD~~~~~ 108 (244)
....|+|+||||.++|+.++|++|||+|++++|||+++ +..++.+.|++|+.||.||+|..+|+.||..+..
T Consensus 11 f~~~d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsDeekR~~YDetG~i 84 (264)
T KOG0719|consen 11 FNKKDLYEVLGVERDATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDEEKRAVYDETGSI 84 (264)
T ss_pred ccccCHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCCC
Confidence 34559999999999999999999999999999999995 2367889999999999999999999999999876
No 43
>KOG0718|consensus
Probab=99.68 E-value=5e-17 Score=148.63 Aligned_cols=74 Identities=32% Similarity=0.567 Sum_probs=67.3
Q ss_pred CCccCcccccccCCCCCHHHHHHHHHHHHHhhCCCCCCCC---hHHHHHHHHHHHHHHHcCChhHHHHHHhcccccc
Q psy5201 37 GQDHTHYEILELERNCSPKEIRSAFIRLSKQFHPDKNPSN---PALHDKFVKLNEAYSILNDMDRRRNYDASLNLQT 110 (244)
Q Consensus 37 ~~~~~~Y~iLgv~~~a~~~eIk~ay~~l~~~~HPD~~~~~---~~~~~~f~~i~~Ay~vL~dp~~R~~YD~~~~~~~ 110 (244)
..+.++|.+|||+++||.+|||+|||++++.||||++.+. ..|++.|+.|.+||+|||||++|..||.+|..+-
T Consensus 6 ~~e~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~~G~qGL 82 (546)
T KOG0718|consen 6 LDEIELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQKRAIYDNYGEQGL 82 (546)
T ss_pred cchhhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhhccc
Confidence 4466999999999999999999999999999999998843 4688999999999999999999999999997743
No 44
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=99.68 E-value=1.1e-16 Score=107.32 Aligned_cols=55 Identities=42% Similarity=0.831 Sum_probs=52.0
Q ss_pred CcccccccCCCCCHHHHHHHHHHHHHhhCCCCCCCChHHHHHHHHHHHHHHHcCC
Q psy5201 41 THYEILELERNCSPKEIRSAFIRLSKQFHPDKNPSNPALHDKFVKLNEAYSILND 95 (244)
Q Consensus 41 ~~Y~iLgv~~~a~~~eIk~ay~~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~vL~d 95 (244)
|||+||||+++++.++||++|++|++++|||++++.+.+.+.|..|++||++|+|
T Consensus 1 ~~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~~~~~~~~~~l~~Ay~~L~d 55 (55)
T cd06257 1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD 55 (55)
T ss_pred ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcC
Confidence 6999999999999999999999999999999998447789999999999999986
No 45
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=9.4e-16 Score=128.70 Aligned_cols=69 Identities=42% Similarity=0.719 Sum_probs=65.2
Q ss_pred CccCcccccccCCCCCHHHHHHHHHHHHHhhCCCCCCCChH-HHHHHHHHHHHHHHcCChhHHHHHHhcc
Q psy5201 38 QDHTHYEILELERNCSPKEIRSAFIRLSKQFHPDKNPSNPA-LHDKFVKLNEAYSILNDMDRRRNYDASL 106 (244)
Q Consensus 38 ~~~~~Y~iLgv~~~a~~~eIk~ay~~l~~~~HPD~~~~~~~-~~~~f~~i~~Ay~vL~dp~~R~~YD~~~ 106 (244)
...+||+||||+++|+..|||++|++++++||||+++.++. +.+.|..|++||+||+|+..|..||..+
T Consensus 4 ~~~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~~i~~Ay~vLsd~~~r~~yd~~~ 73 (237)
T COG2214 4 DLLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPERRAEYDKIG 73 (237)
T ss_pred hhhhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhhCHHHHHHhhhhc
Confidence 45799999999999999999999999999999999997775 9999999999999999999999999864
No 46
>KOG0722|consensus
Probab=99.61 E-value=7.2e-16 Score=131.66 Aligned_cols=76 Identities=36% Similarity=0.705 Sum_probs=69.1
Q ss_pred cccccccccCCCCCccCcccccccCCCCCHHHHHHHHHHHHHhhCCCCCCCChHHHHHHHHHHHHHHHcCChhHHHHHHh
Q psy5201 25 RTGLCCNQRYSSGQDHTHYEILELERNCSPKEIRSAFIRLSKQFHPDKNPSNPALHDKFVKLNEAYSILNDMDRRRNYDA 104 (244)
Q Consensus 25 ~~~l~~~~~~~~~~~~~~Y~iLgv~~~a~~~eIk~ay~~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~vL~dp~~R~~YD~ 104 (244)
..+|.|+ ..|+|+||||++.++..+|.+|||+|++++|||+++ +++..+.|+.|..||++|.|.+.|..||.
T Consensus 25 ~egLYCG-------~enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r-~~e~k~~F~~iAtayeilkd~e~rt~ydy 96 (329)
T KOG0722|consen 25 SEGLYCG-------AENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNR-DPESKKLFVKIATAYEILKDNETRTQYDY 96 (329)
T ss_pred hhhhccc-------chhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccC-CchhhhhhhhhhcccccccchhhHHhHHH
Confidence 3455566 679999999999999999999999999999999999 66666999999999999999999999999
Q ss_pred cccc
Q psy5201 105 SLNL 108 (244)
Q Consensus 105 ~~~~ 108 (244)
.+..
T Consensus 97 aldh 100 (329)
T KOG0722|consen 97 ALDH 100 (329)
T ss_pred HhcC
Confidence 9866
No 47
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=99.58 E-value=3.5e-15 Score=144.17 Aligned_cols=68 Identities=35% Similarity=0.662 Sum_probs=64.3
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHhhCCCCCCCChHHHHHHHHHHHHHHHcCChhHHHHHHhcccc
Q psy5201 40 HTHYEILELERNCSPKEIRSAFIRLSKQFHPDKNPSNPALHDKFVKLNEAYSILNDMDRRRNYDASLNL 108 (244)
Q Consensus 40 ~~~Y~iLgv~~~a~~~eIk~ay~~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~vL~dp~~R~~YD~~~~~ 108 (244)
.|||+||||+++|+.++||++||+|+++||||+++ .+.+.++|+.|++||++|+||.+|..||.++..
T Consensus 2 ~DYYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~-~~eAeekFqeINEAYEVLSDP~KRa~YD~fG~a 69 (871)
T TIGR03835 2 RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNK-APDAASIFAEINEANDVLSNPKKRANYDKYGHD 69 (871)
T ss_pred CChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCC-ChhHHHHHHHHHHHHHHhCCHHHHHHHhhhccc
Confidence 59999999999999999999999999999999998 477888999999999999999999999998765
No 48
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=99.55 E-value=9.8e-15 Score=120.56 Aligned_cols=69 Identities=25% Similarity=0.382 Sum_probs=61.1
Q ss_pred cCcccccccCCC--CCHHHHHHHHHHHHHhhCCCCCCCChH-----HHHHHHHHHHHHHHcCChhHHHHHHhcccc
Q psy5201 40 HTHYEILELERN--CSPKEIRSAFIRLSKQFHPDKNPSNPA-----LHDKFVKLNEAYSILNDMDRRRNYDASLNL 108 (244)
Q Consensus 40 ~~~Y~iLgv~~~--a~~~eIk~ay~~l~~~~HPD~~~~~~~-----~~~~f~~i~~Ay~vL~dp~~R~~YD~~~~~ 108 (244)
.|||+||||+++ ++..+|+++|+++++++|||+..+.+. +.+.|..|++||++|+||.+|..|+..+.+
T Consensus 1 ~~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yll~l~g 76 (171)
T PRK05014 1 MDYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYLLSLHG 76 (171)
T ss_pred CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHHHHHHhcC
Confidence 389999999996 688999999999999999999875432 567899999999999999999999988765
No 49
>PHA03102 Small T antigen; Reviewed
Probab=99.55 E-value=5.3e-15 Score=119.40 Aligned_cols=65 Identities=23% Similarity=0.359 Sum_probs=60.1
Q ss_pred cCcccccccCCCC--CHHHHHHHHHHHHHhhCCCCCCCChHHHHHHHHHHHHHHHcCChhHHHHHHhcccc
Q psy5201 40 HTHYEILELERNC--SPKEIRSAFIRLSKQFHPDKNPSNPALHDKFVKLNEAYSILNDMDRRRNYDASLNL 108 (244)
Q Consensus 40 ~~~Y~iLgv~~~a--~~~eIk~ay~~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~vL~dp~~R~~YD~~~~~ 108 (244)
...|+||||+++| |.++||+||+++++++|||+++ + .++|+.|++||++|+|+.+|..||..+..
T Consensus 5 ~~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkgg-~---~e~~k~in~Ay~~L~d~~~r~~yd~~g~~ 71 (153)
T PHA03102 5 KELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGG-D---EEKMKELNTLYKKFRESVKSLRDLDGEED 71 (153)
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCc-h---hHHHHHHHHHHHHHhhHHHhccccccCCc
Confidence 3579999999999 9999999999999999999975 2 47999999999999999999999998866
No 50
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=99.52 E-value=3e-14 Score=118.11 Aligned_cols=70 Identities=23% Similarity=0.345 Sum_probs=61.4
Q ss_pred ccCcccccccCCC--CCHHHHHHHHHHHHHhhCCCCCCCChHHHH-----HHHHHHHHHHHcCChhHHHHHHhcccc
Q psy5201 39 DHTHYEILELERN--CSPKEIRSAFIRLSKQFHPDKNPSNPALHD-----KFVKLNEAYSILNDMDRRRNYDASLNL 108 (244)
Q Consensus 39 ~~~~Y~iLgv~~~--a~~~eIk~ay~~l~~~~HPD~~~~~~~~~~-----~f~~i~~Ay~vL~dp~~R~~YD~~~~~ 108 (244)
..|||+||||+++ ++..+|+++|++|++++|||+++..+.... .+..|++||++|+||.+|..|+..+.+
T Consensus 5 ~~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yll~l~G 81 (176)
T PRK03578 5 KDDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYLLHLRG 81 (176)
T ss_pred CCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHHHhcC
Confidence 4799999999995 689999999999999999999875554433 458999999999999999999987765
No 51
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=99.52 E-value=3.1e-14 Score=117.57 Aligned_cols=71 Identities=24% Similarity=0.465 Sum_probs=63.4
Q ss_pred CccCcccccccCCC--CCHHHHHHHHHHHHHhhCCCCCCCChH-----HHHHHHHHHHHHHHcCChhHHHHHHhcccc
Q psy5201 38 QDHTHYEILELERN--CSPKEIRSAFIRLSKQFHPDKNPSNPA-----LHDKFVKLNEAYSILNDMDRRRNYDASLNL 108 (244)
Q Consensus 38 ~~~~~Y~iLgv~~~--a~~~eIk~ay~~l~~~~HPD~~~~~~~-----~~~~f~~i~~Ay~vL~dp~~R~~YD~~~~~ 108 (244)
+..|||++|||++. .+..+|+++|++|++++|||++.+.+. +.+.+..|++||+||+||.+|..|+..+.+
T Consensus 2 ~~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~YlL~l~g 79 (173)
T PRK00294 2 GTPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYLLALSG 79 (173)
T ss_pred CCCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhHHHHHHhcC
Confidence 46799999999997 678999999999999999999875543 567899999999999999999999998865
No 52
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=99.52 E-value=2.6e-14 Score=117.42 Aligned_cols=69 Identities=25% Similarity=0.361 Sum_probs=60.2
Q ss_pred cCcccccccCCC--CCHHHHHHHHHHHHHhhCCCCCCCChH---HHHHHHHHHHHHHHcCChhHHHHHHhcccc
Q psy5201 40 HTHYEILELERN--CSPKEIRSAFIRLSKQFHPDKNPSNPA---LHDKFVKLNEAYSILNDMDRRRNYDASLNL 108 (244)
Q Consensus 40 ~~~Y~iLgv~~~--a~~~eIk~ay~~l~~~~HPD~~~~~~~---~~~~f~~i~~Ay~vL~dp~~R~~YD~~~~~ 108 (244)
.|||+||||++. ++..+|+++|+++++++|||++.+..+ +.+.+..|++||+||+||.+|..|+..+.+
T Consensus 2 ~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~~Ra~YlL~l~g 75 (166)
T PRK01356 2 QNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALKRAEYMLLLQN 75 (166)
T ss_pred CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHccC
Confidence 489999999996 789999999999999999999874322 334688999999999999999999988865
No 53
>KOG0624|consensus
Probab=99.49 E-value=5e-14 Score=125.74 Aligned_cols=72 Identities=29% Similarity=0.566 Sum_probs=65.5
Q ss_pred CCccCcccccccCCCCCHHHHHHHHHHHHHhhCCCCCCCC---hHHHHHHHHHHHHHHHcCChhHHHHHHhcccc
Q psy5201 37 GQDHTHYEILELERNCSPKEIRSAFIRLSKQFHPDKNPSN---PALHDKFVKLNEAYSILNDMDRRRNYDASLNL 108 (244)
Q Consensus 37 ~~~~~~Y~iLgv~~~a~~~eIk~ay~~l~~~~HPD~~~~~---~~~~~~f~~i~~Ay~vL~dp~~R~~YD~~~~~ 108 (244)
+..+|||+||||.++|+..||-+|||+++.++|||-..+. ..++..|..|..|-+||+||++|+.||..-..
T Consensus 391 s~kRDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~EkRrqFDnGeDP 465 (504)
T KOG0624|consen 391 SGKRDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDPEKRRQFDNGEDP 465 (504)
T ss_pred hccchHHHHhhhcccccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCHHHHhhccCCCCC
Confidence 4568999999999999999999999999999999988744 35888999999999999999999999987654
No 54
>KOG0720|consensus
Probab=99.43 E-value=1.5e-13 Score=125.94 Aligned_cols=70 Identities=29% Similarity=0.522 Sum_probs=66.5
Q ss_pred CCccCcccccccCCCCCHHHHHHHHHHHHHhhCCCCCCCChHHHHHHHHHHHHHHHcCChhHHHHHHhccc
Q psy5201 37 GQDHTHYEILELERNCSPKEIRSAFIRLSKQFHPDKNPSNPALHDKFVKLNEAYSILNDMDRRRNYDASLN 107 (244)
Q Consensus 37 ~~~~~~Y~iLgv~~~a~~~eIk~ay~~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~vL~dp~~R~~YD~~~~ 107 (244)
.+..|+|.||||+++++.++||+.|+++|...|||||. .+.|+|.|+.|..||++|+|+.+|..||..+.
T Consensus 232 ~~~~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~-~~~A~Eafk~Lq~Afevig~~~kR~eYd~e~~ 301 (490)
T KOG0720|consen 232 LNILDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNM-IPRAEEAFKKLQVAFEVIGDSVKRKEYDLELK 301 (490)
T ss_pred hcCCCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccC-ChhHHHHHHHHHHHHHHhcchhhhhHHHHHHH
Confidence 34789999999999999999999999999999999998 89999999999999999999999999998773
No 55
>KOG0550|consensus
Probab=99.36 E-value=5.5e-13 Score=121.24 Aligned_cols=74 Identities=35% Similarity=0.609 Sum_probs=68.3
Q ss_pred CCCccCcccccccCCCCCHHHHHHHHHHHHHhhCCCCCCCC-hHHHHHHHHHHHHHHHcCChhHHHHHHhccccc
Q psy5201 36 SGQDHTHYEILELERNCSPKEIRSAFIRLSKQFHPDKNPSN-PALHDKFVKLNEAYSILNDMDRRRNYDASLNLQ 109 (244)
Q Consensus 36 ~~~~~~~Y~iLgv~~~a~~~eIk~ay~~l~~~~HPD~~~~~-~~~~~~f~~i~~Ay~vL~dp~~R~~YD~~~~~~ 109 (244)
.++.+|||.||||.++++..|||++|+++++.+|||++.++ .+++..|++|.+||.||+||.+|..||......
T Consensus 369 kSkRkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r~dsg~dle 443 (486)
T KOG0550|consen 369 KSKRKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVRFDSGQDLE 443 (486)
T ss_pred HhhhhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhhcccccchh
Confidence 35678999999999999999999999999999999999987 788999999999999999999999999876553
No 56
>KOG0714|consensus
Probab=99.28 E-value=3.9e-12 Score=111.53 Aligned_cols=73 Identities=34% Similarity=0.651 Sum_probs=64.6
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHhhCCCCCCCC-hHHHHHHHHHHHHHHHcCChhHHHHHHhcccccccc
Q psy5201 39 DHTHYEILELERNCSPKEIRSAFIRLSKQFHPDKNPSN-PALHDKFVKLNEAYSILNDMDRRRNYDASLNLQTVR 112 (244)
Q Consensus 39 ~~~~Y~iLgv~~~a~~~eIk~ay~~l~~~~HPD~~~~~-~~~~~~f~~i~~Ay~vL~dp~~R~~YD~~~~~~~~~ 112 (244)
..|+|+||||.++|+..+|++||+++++++|||+++.. ..+..+|.+|.+||++|+||.+|..||..+. ....
T Consensus 2 ~~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~~~-~~~~ 75 (306)
T KOG0714|consen 2 GKDYYKILGIARSASEEDIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIAEAYEVLSDPKKRKIYDQYGE-EGLK 75 (306)
T ss_pred cccHHHHhCccccccHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHhhhhccccccCCHHHhhhccccCc-cccc
Confidence 46999999999999999999999999999999998854 2455589999999999999999999999997 4443
No 57
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=99.28 E-value=1.6e-11 Score=112.55 Aligned_cols=70 Identities=33% Similarity=0.601 Sum_probs=63.9
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHhhCCCCCCCC-----hHHHHHHHHHHHHHHHcCChhHHHHHHhcccc
Q psy5201 39 DHTHYEILELERNCSPKEIRSAFIRLSKQFHPDKNPSN-----PALHDKFVKLNEAYSILNDMDRRRNYDASLNL 108 (244)
Q Consensus 39 ~~~~Y~iLgv~~~a~~~eIk~ay~~l~~~~HPD~~~~~-----~~~~~~f~~i~~Ay~vL~dp~~R~~YD~~~~~ 108 (244)
--||||||||+.+++..+||++||+|+.++|||+.+.- ++-++.+.+|++||..|+|...|+.|-.+|..
T Consensus 97 ~fDPyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~renyl~yGtP 171 (610)
T COG5407 97 GFDPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRRENYLNYGTP 171 (610)
T ss_pred CCChHHhhcccCCCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCCC
Confidence 46999999999999999999999999999999998751 46788999999999999999999999888765
No 58
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=99.27 E-value=5.1e-12 Score=97.27 Aligned_cols=52 Identities=31% Similarity=0.388 Sum_probs=47.2
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHhhCCCCCCCChHHHHHHHHHHHHHHHcC
Q psy5201 39 DHTHYEILELERNCSPKEIRSAFIRLSKQFHPDKNPSNPALHDKFVKLNEAYSILN 94 (244)
Q Consensus 39 ~~~~Y~iLgv~~~a~~~eIk~ay~~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~vL~ 94 (244)
..++|+||||++++|.+|||++|++|++++|||+.+ + .+.|++|++||++|.
T Consensus 64 ~~eAy~ILGv~~~As~~eIkkaYRrLa~~~HPDkgG-s---~~~~~kIneAyevL~ 115 (116)
T PTZ00100 64 KSEAYKILNISPTASKERIREAHKQLMLRNHPDNGG-S---TYIASKVNEAKDLLL 115 (116)
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCC-C---HHHHHHHHHHHHHHh
Confidence 479999999999999999999999999999999853 3 467899999999995
No 59
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=99.27 E-value=4.9e-12 Score=111.51 Aligned_cols=58 Identities=22% Similarity=0.434 Sum_probs=51.7
Q ss_pred CccCcccccccCCCCCHHHHHHHHHHHHHhhCCCCCCCC-------hHHHHHHHHHHHHHHHcCC
Q psy5201 38 QDHTHYEILELERNCSPKEIRSAFIRLSKQFHPDKNPSN-------PALHDKFVKLNEAYSILND 95 (244)
Q Consensus 38 ~~~~~Y~iLgv~~~a~~~eIk~ay~~l~~~~HPD~~~~~-------~~~~~~f~~i~~Ay~vL~d 95 (244)
...++|+||||++++|.++||++||+|+++||||++.+. +.+.++|+.|++||++|+.
T Consensus 198 ~~~~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~ 262 (267)
T PRK09430 198 TLEDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKK 262 (267)
T ss_pred cHHhHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Confidence 447999999999999999999999999999999996431 3578999999999999974
No 60
>PHA02624 large T antigen; Provisional
Probab=99.23 E-value=1.6e-11 Score=117.61 Aligned_cols=62 Identities=24% Similarity=0.446 Sum_probs=57.0
Q ss_pred CccCcccccccCCCC--CHHHHHHHHHHHHHhhCCCCCCCChHHHHHHHHHHHHHHHcCChhHHHHHH
Q psy5201 38 QDHTHYEILELERNC--SPKEIRSAFIRLSKQFHPDKNPSNPALHDKFVKLNEAYSILNDMDRRRNYD 103 (244)
Q Consensus 38 ~~~~~Y~iLgv~~~a--~~~eIk~ay~~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~vL~dp~~R~~YD 103 (244)
...++|+||||+++| +.++||+|||++++++|||+++ + .+.|+.|++||++|+|+.+|..|.
T Consensus 9 e~~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKgG-d---eekfk~Ln~AYevL~d~~k~~r~~ 72 (647)
T PHA02624 9 ESKELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKGG-D---EEKMKRLNSLYKKLQEGVKSARQS 72 (647)
T ss_pred HHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCC-c---HHHHHHHHHHHHHHhcHHHhhhcc
Confidence 346899999999999 9999999999999999999974 3 579999999999999999999994
No 61
>KOG1150|consensus
Probab=99.22 E-value=3.6e-10 Score=93.78 Aligned_cols=70 Identities=23% Similarity=0.449 Sum_probs=63.4
Q ss_pred CCCccCcccccccCCCCCHHHHHHHHHHHHHhhCCCCCCCC-hHHHHHHHHHHHHHHHcCChhHHHHHHhc
Q psy5201 36 SGQDHTHYEILELERNCSPKEIRSAFIRLSKQFHPDKNPSN-PALHDKFVKLNEAYSILNDMDRRRNYDAS 105 (244)
Q Consensus 36 ~~~~~~~Y~iLgv~~~a~~~eIk~ay~~l~~~~HPD~~~~~-~~~~~~f~~i~~Ay~vL~dp~~R~~YD~~ 105 (244)
+.-+.|||+||.|.|+.+.++||+.|++|+...|||+|+++ +.|...|..|..||.+|-|+..|..-+..
T Consensus 49 tyfnLNpfeVLqIdpev~~edikkryRklSilVHPDKN~Dd~~rAqkAFdivkKA~k~l~n~~~rkr~~~~ 119 (250)
T KOG1150|consen 49 TYFNLNPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPDDAERAQKAFDIVKKAYKLLENDKIRKRCLDV 119 (250)
T ss_pred cccccChHHHHhcCCCCCHHHHHHHHHhhheeecCCCCcccHHHHHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 34688999999999999999999999999999999999988 78899999999999999999977765433
No 62
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=99.17 E-value=7.5e-11 Score=97.50 Aligned_cols=68 Identities=24% Similarity=0.369 Sum_probs=60.1
Q ss_pred cCcccccccCCC--CCHHHHHHHHHHHHHhhCCCCCCCChH-----HHHHHHHHHHHHHHcCChhHHHHHHhccc
Q psy5201 40 HTHYEILELERN--CSPKEIRSAFIRLSKQFHPDKNPSNPA-----LHDKFVKLNEAYSILNDMDRRRNYDASLN 107 (244)
Q Consensus 40 ~~~Y~iLgv~~~--a~~~eIk~ay~~l~~~~HPD~~~~~~~-----~~~~f~~i~~Ay~vL~dp~~R~~YD~~~~ 107 (244)
.|||++|||++. .+..+++++|++|.+.+|||+....+. +.+.-..||+||.+|+||.+|+.|=..+.
T Consensus 2 ~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YLL~L~ 76 (173)
T PRK01773 2 NNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAIIALN 76 (173)
T ss_pred CChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHHHHHHHhc
Confidence 489999999996 799999999999999999999875532 44567899999999999999999988776
No 63
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=99.06 E-value=4.2e-10 Score=91.77 Aligned_cols=57 Identities=32% Similarity=0.416 Sum_probs=50.1
Q ss_pred CCHHHHHHHHHHHHHhhCCCCCCCCh-----HHHHHHHHHHHHHHHcCChhHHHHHHhcccc
Q psy5201 52 CSPKEIRSAFIRLSKQFHPDKNPSNP-----ALHDKFVKLNEAYSILNDMDRRRNYDASLNL 108 (244)
Q Consensus 52 a~~~eIk~ay~~l~~~~HPD~~~~~~-----~~~~~f~~i~~Ay~vL~dp~~R~~YD~~~~~ 108 (244)
.+..+|+++|+++++++|||+.+..+ .+.+.+..|++||++|+||.+|..|+..+.+
T Consensus 3 iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra~ylL~l~g 64 (157)
T TIGR00714 3 LDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRAEYMLSLHG 64 (157)
T ss_pred CCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhHHHHHHhcC
Confidence 57889999999999999999965432 2667899999999999999999999999875
No 64
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=4.4e-09 Score=91.15 Aligned_cols=74 Identities=24% Similarity=0.357 Sum_probs=64.0
Q ss_pred CCCCccCcccccccCC---CCCHHHHHHHHHHHHHhhCCCCCC--CChHHHHHHHHHHHHHHHcCChhHHHHHHhcccc
Q psy5201 35 SSGQDHTHYEILELER---NCSPKEIRSAFIRLSKQFHPDKNP--SNPALHDKFVKLNEAYSILNDMDRRRNYDASLNL 108 (244)
Q Consensus 35 ~~~~~~~~Y~iLgv~~---~a~~~eIk~ay~~l~~~~HPD~~~--~~~~~~~~f~~i~~Ay~vL~dp~~R~~YD~~~~~ 108 (244)
...+..|+|.+|||+. .+++.+|.++.++.+.+||||+.. ++-+..+-|..|..||+||+|+..|..||.--..
T Consensus 38 k~Wk~~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~D~~~R~qyDS~df~ 116 (379)
T COG5269 38 KNWKKVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRKLRLQYDSNDFD 116 (379)
T ss_pred hhhhhhhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhccHHHHhhccccccc
Confidence 3456789999999985 688999999999999999999973 3456788999999999999999999999976544
No 65
>KOG0568|consensus
Probab=98.49 E-value=1.4e-07 Score=80.24 Aligned_cols=56 Identities=32% Similarity=0.604 Sum_probs=50.7
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHhhCCCCCCCChHHHHHHHHHHHHHH-HcCC
Q psy5201 39 DHTHYEILELERNCSPKEIRSAFIRLSKQFHPDKNPSNPALHDKFVKLNEAYS-ILND 95 (244)
Q Consensus 39 ~~~~Y~iLgv~~~a~~~eIk~ay~~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~-vL~d 95 (244)
-..||.||||..+|+.++++.+|+.|++++|||... +....++|.+|.+||. ||+.
T Consensus 46 ~~e~fril~v~e~~~adevr~af~~lakq~hpdsgs-~~adaa~f~qideafrkvlq~ 102 (342)
T KOG0568|consen 46 IMECFRILGVEEGADADEVREAFHDLAKQVHPDSGS-EEADAARFIQIDEAFRKVLQE 102 (342)
T ss_pred HHHHHHHhcccccCchhHHHHHHHHHHHHcCCCCCC-ccccHHHHHHHHHHHHHHHHH
Confidence 358999999999999999999999999999999887 5566789999999997 8864
No 66
>KOG1789|consensus
Probab=98.20 E-value=1.8e-06 Score=86.53 Aligned_cols=54 Identities=33% Similarity=0.639 Sum_probs=46.6
Q ss_pred CccCcccccccCCC----CCHHHHHHHHHHHHHhhCCCCCCCChHHHHHHHHHHHHHHHcC
Q psy5201 38 QDHTHYEILELERN----CSPKEIRSAFIRLSKQFHPDKNPSNPALHDKFVKLNEAYSILN 94 (244)
Q Consensus 38 ~~~~~Y~iLgv~~~----a~~~eIk~ay~~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~vL~ 94 (244)
..-+-|+||+|+-+ -..+.||++|++|+.+||||+|| +..+.|..|++||+.|+
T Consensus 1279 S~d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNP---EGRemFe~VnKAYE~L~ 1336 (2235)
T KOG1789|consen 1279 SVDLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNP---EGREMFERVNKAYELLS 1336 (2235)
T ss_pred chHHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCCc---hHHHHHHHHHHHHHHHH
Confidence 34578999999853 34588999999999999999997 66799999999999998
No 67
>KOG3192|consensus
Probab=97.72 E-value=4.8e-05 Score=61.15 Aligned_cols=72 Identities=25% Similarity=0.465 Sum_probs=58.7
Q ss_pred CCccCcccccccCC--CCCHHHHHHHHHHHHHhhCCCCCCCC-----hHHHHHHHHHHHHHHHcCChhHHHHHHhcccc
Q psy5201 37 GQDHTHYEILELER--NCSPKEIRSAFIRLSKQFHPDKNPSN-----PALHDKFVKLNEAYSILNDMDRRRNYDASLNL 108 (244)
Q Consensus 37 ~~~~~~Y~iLgv~~--~a~~~eIk~ay~~l~~~~HPD~~~~~-----~~~~~~f~~i~~Ay~vL~dp~~R~~YD~~~~~ 108 (244)
+...+||.|+|... ..+++.++.-|.-.++++|||+.... ..+.+....|++||++|.||-+|+.|=..+.+
T Consensus 5 ~~~~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA~Yilkl~g 83 (168)
T KOG3192|consen 5 GSPSRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARARYLLKLKG 83 (168)
T ss_pred chHHHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhC
Confidence 45679999998754 45677777799999999999994421 34778899999999999999999999777655
No 68
>KOG0723|consensus
Probab=97.69 E-value=6.9e-05 Score=56.46 Aligned_cols=51 Identities=29% Similarity=0.386 Sum_probs=43.2
Q ss_pred cccccccCCCCCHHHHHHHHHHHHHhhCCCCCCCChHHHHHHHHHHHHHHHcCCh
Q psy5201 42 HYEILELERNCSPKEIRSAFIRLSKQFHPDKNPSNPALHDKFVKLNEAYSILNDM 96 (244)
Q Consensus 42 ~Y~iLgv~~~a~~~eIk~ay~~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~vL~dp 96 (244)
-=.||||++.++.+.||.++|+.....|||+.. +|-- -..|++|+++|...
T Consensus 58 A~lIL~v~~s~~k~KikeaHrriM~~NHPD~GG-SPYl---AsKINEAKdlLe~~ 108 (112)
T KOG0723|consen 58 AALILGVTPSLDKDKIKEAHRRIMLANHPDRGG-SPYL---ASKINEAKDLLEGT 108 (112)
T ss_pred HHHHhCCCccccHHHHHHHHHHHHHcCCCcCCC-CHHH---HHHHHHHHHHHhcc
Confidence 335999999999999999999999999999987 5522 25799999999754
No 69
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.48 E-value=0.0023 Score=52.93 Aligned_cols=67 Identities=21% Similarity=0.360 Sum_probs=53.4
Q ss_pred CcccccccCCCC--CHHHHHHHHHHHHHhhCCCCCCCChH-----HHHHHHHHHHHHHHcCChhHHHHHHhccc
Q psy5201 41 THYEILELERNC--SPKEIRSAFIRLSKQFHPDKNPSNPA-----LHDKFVKLNEAYSILNDMDRRRNYDASLN 107 (244)
Q Consensus 41 ~~Y~iLgv~~~a--~~~eIk~ay~~l~~~~HPD~~~~~~~-----~~~~f~~i~~Ay~vL~dp~~R~~YD~~~~ 107 (244)
++...+|.++.+ ..+.++..|+.+.+.+|||+....+. +.+++..++.||.+|.||-.|..|=..+.
T Consensus 2 ~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra~~~lal~ 75 (174)
T COG1076 2 DGFVLFGLPRAFQIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEYLLALA 75 (174)
T ss_pred CcccccccHHHHHHHHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhc
Confidence 345556666544 56778999999999999999875432 44689999999999999999999977665
No 70
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.34 E-value=0.0024 Score=52.89 Aligned_cols=55 Identities=25% Similarity=0.479 Sum_probs=47.3
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHhhCCCCCCCC-------hHHHHHHHHHHHHHHHc
Q psy5201 39 DHTHYEILELERNCSPKEIRSAFIRLSKQFHPDKNPSN-------PALHDKFVKLNEAYSIL 93 (244)
Q Consensus 39 ~~~~Y~iLgv~~~a~~~eIk~ay~~l~~~~HPD~~~~~-------~~~~~~f~~i~~Ay~vL 93 (244)
..+.|.+||+...++..+|+++|+++....|||+-.+. ..+.+.++.|++||+.+
T Consensus 112 ~~~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~ 173 (174)
T COG1076 112 REDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI 173 (174)
T ss_pred chhHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence 37999999999999999999999999999999985422 35778899999999753
No 71
>KOG0431|consensus
Probab=95.67 E-value=0.014 Score=55.30 Aligned_cols=47 Identities=23% Similarity=0.375 Sum_probs=35.7
Q ss_pred ccCCCCCHHHHHHHHHHHHHhhCCCCCCCCh-------HHHHHHHHHHHHHHHc
Q psy5201 47 ELERNCSPKEIRSAFIRLSKQFHPDKNPSNP-------ALHDKFVKLNEAYSIL 93 (244)
Q Consensus 47 gv~~~a~~~eIk~ay~~l~~~~HPD~~~~~~-------~~~~~f~~i~~Ay~vL 93 (244)
++..-.+.++||++||+.++..||||.+..+ .+++.|-.+.+|++.-
T Consensus 395 sltDLVtp~~VKKaYrKA~L~VHPDKlqq~gas~~qK~Iaekvfd~l~eawn~f 448 (453)
T KOG0431|consen 395 SLTDLVTPAQVKKAYRKAVLCVHPDKLQQKGASLEQKYIAEKVFDALSEAWNKF 448 (453)
T ss_pred chhhccCHHHHHHHHHhhhheeCcccccCCcccHHHHHHHHHHHHHHHHHHHhh
Confidence 4445678999999999999999999987552 2456677777776643
No 72
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=92.81 E-value=0.24 Score=38.93 Aligned_cols=50 Identities=24% Similarity=0.208 Sum_probs=33.8
Q ss_pred CcccccccCCCCCHHHHHHHHHHHHHhhCCCCCCCChHHHHHHHHHHHHHHHcC
Q psy5201 41 THYEILELERNCSPKEIRSAFIRLSKQFHPDKNPSNPALHDKFVKLNEAYSILN 94 (244)
Q Consensus 41 ~~Y~iLgv~~~a~~~eIk~ay~~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~vL~ 94 (244)
--.+||||++..+.++|.+.|.+|-...+|++.+ +. =.=..|..|.+.|.
T Consensus 59 EA~~ILnv~~~~~~eeI~k~y~~Lf~~Nd~~kGG-Sf---YLQSKV~rAKErl~ 108 (127)
T PF03656_consen 59 EARQILNVKEELSREEIQKRYKHLFKANDPSKGG-SF---YLQSKVFRAKERLE 108 (127)
T ss_dssp HHHHHHT--G--SHHHHHHHHHHHHHHT-CCCTS--H---HHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCccCHHHHHHHHHHHHhccCCCcCC-CH---HHHHHHHHHHHHHH
Confidence 3458999999999999999999999999999875 32 11244666766665
No 73
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=86.14 E-value=9.7 Score=27.05 Aligned_cols=18 Identities=22% Similarity=0.408 Sum_probs=11.3
Q ss_pred HHHHHHHHhhCCCCCCCC
Q psy5201 227 DRFAKRYQESYPYRRPDS 244 (244)
Q Consensus 227 e~~~~~~~~~~~~~~~~~ 244 (244)
+++++.-.+.+.+.+|+.
T Consensus 61 ~rIe~~Ar~~lgM~~p~~ 78 (85)
T TIGR02209 61 ERIEKIAKKQLGMKLPDA 78 (85)
T ss_pred HHHHHHHHHhcCCCCCCC
Confidence 445555556678887763
No 74
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=85.20 E-value=7.2 Score=27.27 Aligned_cols=50 Identities=12% Similarity=0.169 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhchhchhhhchhhHHHHHHHHHHHHHHhh
Q psy5201 170 VMLLIGVATGALGLQILAVQYSKTFPRNVVNSREMEISQNLMNARNDAKK 219 (244)
Q Consensus 170 v~~~~~~~~~g~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~r~~ar~ 219 (244)
+..+++-+++|+.+.++.-..+....++.+...-........+..+.++.
T Consensus 2 ~~g~l~Ga~~Ga~~glL~aP~sG~e~R~~l~~~~~~~~~~~~~~~~~~~~ 51 (74)
T PF12732_consen 2 LLGFLAGAAAGAAAGLLFAPKSGKETREKLKDKAEDLKDKAKDLYEEAKE 51 (74)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666677777777777777777777777666666666666655444
No 75
>PF13446 RPT: A repeated domain in UCH-protein
Probab=84.67 E-value=2.3 Score=28.73 Aligned_cols=27 Identities=30% Similarity=0.383 Sum_probs=24.6
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHH
Q psy5201 40 HTHYEILELERNCSPKEIRSAFIRLSK 66 (244)
Q Consensus 40 ~~~Y~iLgv~~~a~~~eIk~ay~~l~~ 66 (244)
.+-|++|||+++.+.+.|-.+|.....
T Consensus 5 ~~Ay~~Lgi~~~~~Dd~Ii~~f~~~~~ 31 (62)
T PF13446_consen 5 EEAYEILGIDEDTDDDFIISAFQSKVN 31 (62)
T ss_pred HHHHHHhCcCCCCCHHHHHHHHHHHHH
Confidence 367999999999999999999999887
No 76
>PF14687 DUF4460: Domain of unknown function (DUF4460)
Probab=81.53 E-value=3.8 Score=31.46 Aligned_cols=47 Identities=28% Similarity=0.329 Sum_probs=36.2
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCCCCCChH----HHHHHHHHHHHHHHcCCh
Q psy5201 50 RNCSPKEIRSAFIRLSKQFHPDKNPSNPA----LHDKFVKLNEAYSILNDM 96 (244)
Q Consensus 50 ~~a~~~eIk~ay~~l~~~~HPD~~~~~~~----~~~~f~~i~~Ay~vL~dp 96 (244)
+..+..+++.+.+.+-+..|||.....|. .++-++.++.-.+.|..+
T Consensus 4 r~~~~~~l~~aLr~Fy~~VHPDlF~~~P~~k~~Ne~SLk~Ln~~Ld~l~~~ 54 (112)
T PF14687_consen 4 RNLSSPDLRSALRPFYFAVHPDLFGQHPEEKQVNEESLKLLNSYLDSLKKR 54 (112)
T ss_pred hhhhhHHHHHHHHHHHHHhCCcccccChHHHHhhHHHHHHHHHHHHHHhcc
Confidence 45677899999999999999998776653 345677777777777654
No 77
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=80.02 E-value=21 Score=26.12 Aligned_cols=19 Identities=16% Similarity=0.228 Sum_probs=11.8
Q ss_pred HHHHHHHHHhhCCCCCCCC
Q psy5201 226 IDRFAKRYQESYPYRRPDS 244 (244)
Q Consensus 226 ~e~~~~~~~~~~~~~~~~~ 244 (244)
.+++++.-.+.+.+.+|++
T Consensus 71 ~~rIe~iA~~~LgM~~P~~ 89 (97)
T PF04999_consen 71 PSRIERIAREKLGMVPPEP 89 (97)
T ss_pred HHHHHHHHHHcCCCCCCCC
Confidence 3444555555788888874
No 78
>KOG0724|consensus
Probab=78.10 E-value=2.3 Score=38.50 Aligned_cols=54 Identities=30% Similarity=0.457 Sum_probs=41.1
Q ss_pred CCCHHHHHHHHHHHHHhhCCCCCCC----ChHHHHHHHHHHHHHHHcCChhHHHHHHh
Q psy5201 51 NCSPKEIRSAFIRLSKQFHPDKNPS----NPALHDKFVKLNEAYSILNDMDRRRNYDA 104 (244)
Q Consensus 51 ~a~~~eIk~ay~~l~~~~HPD~~~~----~~~~~~~f~~i~~Ay~vL~dp~~R~~YD~ 104 (244)
.++..+|..+|+..++..||++... .-...+.|..|.+||.||++...|...|.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~ka~~i~~~~~~~~t~~~ 60 (335)
T KOG0724|consen 3 LASEDELRLAYREMALKSHPEKKSFYEKLSLWTEEEFKKIEKALAILDDDEPRRTPDS 60 (335)
T ss_pred cccHHHHHHHHHHHhhhcCcHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccccchhh
Confidence 3567889999999999999998741 22566789999999999998655444443
No 79
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=75.13 E-value=21 Score=30.01 Aligned_cols=20 Identities=15% Similarity=0.293 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q psy5201 170 VMLLIGVATGALGLQILAVQ 189 (244)
Q Consensus 170 v~~~~~~~~~g~~~~~~~~~ 189 (244)
+.++++++++|++++|+...
T Consensus 3 ii~~i~~~~vG~~~G~~~~~ 22 (201)
T PF12072_consen 3 IIIAIVALIVGIGIGYLVRK 22 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555543
No 80
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=72.80 E-value=31 Score=24.51 Aligned_cols=18 Identities=22% Similarity=0.302 Sum_probs=11.2
Q ss_pred hhhHHHHHHHHHHHHhhC
Q psy5201 220 YDLQENIDRFAKRYQESY 237 (244)
Q Consensus 220 ~~~~~q~e~~~~~~~~~~ 237 (244)
++++++++-+++-+.+-.
T Consensus 52 ~rm~eRI~tLE~ILd~e~ 69 (75)
T TIGR02976 52 DRLEERIDTLERILDAEH 69 (75)
T ss_pred HHHHHHHHHHHHHHcCCC
Confidence 356777777776665443
No 81
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=72.22 E-value=9.4 Score=32.18 Aligned_cols=38 Identities=24% Similarity=0.284 Sum_probs=29.8
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCCCCCChHHHHHHHHHHHHHHHcC
Q psy5201 49 ERNCSPKEIRSAFIRLSKQFHPDKNPSNPALHDKFVKLNEAYSILN 94 (244)
Q Consensus 49 ~~~a~~~eIk~ay~~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~vL~ 94 (244)
+++|+.+||.+|+.++..+|-- + .+.-..|..||+.+.
T Consensus 1 S~~ASfeEIq~Arn~ll~~y~g-----d---~~~~~~IEaAYD~IL 38 (194)
T PF11833_consen 1 SEDASFEEIQAARNRLLAQYAG-----D---EKSREAIEAAYDAIL 38 (194)
T ss_pred CCCCCHHHHHHHHHHHHHHhcC-----C---HHHHHHHHHHHHHHH
Confidence 5799999999999999999932 2 244567999998554
No 82
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=71.51 E-value=26 Score=28.93 Aligned_cols=14 Identities=29% Similarity=0.468 Sum_probs=5.8
Q ss_pred hhchhhHHHHHHHH
Q psy5201 198 VVNSREMEISQNLM 211 (244)
Q Consensus 198 ~~d~~~~~~~~~~~ 211 (244)
.|+++...+...++
T Consensus 59 ~l~~R~~~I~~~l~ 72 (181)
T PRK13454 59 VLAERQGTITNDLA 72 (181)
T ss_pred HHHHHHHHHHhHHH
Confidence 34444444443333
No 83
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=71.09 E-value=39 Score=27.64 Aligned_cols=43 Identities=19% Similarity=0.260 Sum_probs=17.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhchhchhhhchhhHHHHHHHHHH
Q psy5201 167 ATLVMLLIGVATGALGLQILAVQYSKTFPRNVVNSREMEISQNLMNA 213 (244)
Q Consensus 167 ~~~v~~~~~~~~~g~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 213 (244)
++++..++.|+++.+++..+.++.. ...|+++...+...++++
T Consensus 19 ~t~~~~iInFliL~~lL~~~l~~pi----~~~l~~R~~~I~~~l~~A 61 (173)
T PRK13453 19 GTVIVTVLTFIVLLALLKKFAWGPL----KDVMDKRERDINRDIDDA 61 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444443332 223344444444444333
No 84
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=69.35 E-value=38 Score=24.08 Aligned_cols=17 Identities=12% Similarity=0.311 Sum_probs=10.2
Q ss_pred hhHHHHHHHHHHHHhhC
Q psy5201 221 DLQENIDRFAKRYQESY 237 (244)
Q Consensus 221 ~~~~q~e~~~~~~~~~~ 237 (244)
+++++++.+++-+.+-.
T Consensus 53 rm~eRI~tLE~ILdae~ 69 (75)
T PF06667_consen 53 RMEERIETLERILDAEH 69 (75)
T ss_pred HHHHHHHHHHHHHcCCC
Confidence 56667666666554433
No 85
>PF01956 DUF106: Integral membrane protein DUF106; InterPro: IPR002809 This entry represents a group of eukaryotic and archaeal proteins that have no known function. Members are predicted to be integral membrane proteins.; GO: 0016020 membrane
Probab=68.74 E-value=16 Score=29.58 Aligned_cols=66 Identities=12% Similarity=0.075 Sum_probs=27.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH-hhhchhchhhhchhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q psy5201 167 ATLVMLLIGVATGALGLQILAV-QYSKTFPRNVVNSREMEISQNLMNARNDAKKYDLQENIDRFAKRYQ 234 (244)
Q Consensus 167 ~~~v~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~d~~~~~~~~~~~~~r~~ar~~~~~~q~e~~~~~~~ 234 (244)
|.+.++.+++.+++++.++..- -...-..++ +++...+. ....++.+++++++.....++++++..
T Consensus 10 ~~~~P~~i~v~~~~~~~~~~s~l~~~~~i~~~-~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~l~~~~~ 76 (168)
T PF01956_consen 10 WVLLPITIVVFLIAILRGLISELLQKFLIDRK-MDKYQKRM-KEFQKRYRELRKNGDFKKPKKLEKRQM 76 (168)
T ss_pred hhhcCHHHHHHHHHHHHHHHHHHHhccccccc-cHHHHHHH-HHHHHHHHHHHHcCCccCHHHHHHHHH
Confidence 5555554555555544444432 111111122 34433333 333344444555555554455554443
No 86
>COG5552 Uncharacterized conserved protein [Function unknown]
Probab=68.49 E-value=19 Score=25.56 Aligned_cols=61 Identities=18% Similarity=0.313 Sum_probs=40.3
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHhhCCCCCCCChHHHHHHHHHHHHHHHcCChhHHHHHHhc
Q psy5201 40 HTHYEILELERNCSPKEIRSAFIRLSKQFHPDKNPSNPALHDKFVKLNEAYSILNDMDRRRNYDAS 105 (244)
Q Consensus 40 ~~~Y~iLgv~~~a~~~eIk~ay~~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~vL~dp~~R~~YD~~ 105 (244)
.|--+++|+.|-|+..||+.+-.+.++++.--..| +....+.|..-+++.. ...|+.-|..
T Consensus 3 RNIk~LfnfdPPAT~~EvrdAAlQfVRKlSGtT~P-S~~n~~AFe~AV~~ia----A~areLLDaL 63 (88)
T COG5552 3 RNIKELFNFDPPATPVEVRDAALQFVRKLSGTTHP-SAANAEAFEAAVAEIA----ATARELLDAL 63 (88)
T ss_pred cchHHHhCCCCCCCcHHHHHHHHHHHHHhcCCCCc-chhhHHHHHHHHHHHH----HHHHHHHHhc
Confidence 45557889999999999999998888887655555 4444555655444433 2345555544
No 87
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=68.47 E-value=47 Score=26.59 Aligned_cols=13 Identities=31% Similarity=0.460 Sum_probs=5.1
Q ss_pred hchhhHHHHHHHH
Q psy5201 199 VNSREMEISQNLM 211 (244)
Q Consensus 199 ~d~~~~~~~~~~~ 211 (244)
|+++...+...++
T Consensus 51 l~~R~~~I~~~l~ 63 (156)
T CHL00118 51 LDERKEYIRKNLT 63 (156)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444333333
No 88
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=68.01 E-value=53 Score=25.49 Aligned_cols=15 Identities=40% Similarity=0.359 Sum_probs=6.3
Q ss_pred hhchhhHHHHHHHHH
Q psy5201 198 VVNSREMEISQNLMN 212 (244)
Q Consensus 198 ~~d~~~~~~~~~~~~ 212 (244)
.|+++...+...+++
T Consensus 33 ~l~~R~~~I~~~l~~ 47 (140)
T PRK07353 33 VVEEREDYIRTNRAE 47 (140)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444433
No 89
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=65.30 E-value=56 Score=25.84 Aligned_cols=23 Identities=17% Similarity=0.011 Sum_probs=10.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHh
Q psy5201 167 ATLVMLLIGVATGALGLQILAVQ 189 (244)
Q Consensus 167 ~~~v~~~~~~~~~g~~~~~~~~~ 189 (244)
++++..++.|+++.+++..+.+.
T Consensus 5 ~~~~~~~i~Flil~~il~~~~~~ 27 (156)
T PRK05759 5 GTLIGQLIAFLILVWFIMKFVWP 27 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHH
Confidence 34444444444444444444443
No 90
>PRK13654 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=64.95 E-value=5.2 Score=36.44 Aligned_cols=92 Identities=13% Similarity=0.149 Sum_probs=63.2
Q ss_pred ccccccccC--CCccCccchhhhhhcccccccccCCCCCccCcccccccCCCCCHHHHHHHHHHHHHhhCCCCC-CCChH
Q psy5201 2 YSHLCSCMK--TNTFNSKSAFFLFNRTGLCCNQRYSSGQDHTHYEILELERNCSPKEIRSAFIRLSKQFHPDKN-PSNPA 78 (244)
Q Consensus 2 ~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Y~iLgv~~~a~~~eIk~ay~~l~~~~HPD~~-~~~~~ 78 (244)
|+.+..|+| ++.|... +++.|-++++...+.......+++|+-|||++..-..+|-+.=.+.+.+.-|-.. -++|.
T Consensus 215 F~~lmraqP~ll~g~~~k-LW~RFFLlsVfaTmyl~d~~R~~Fy~alGlD~~~yD~~Vi~~Tne~s~rvFP~~Ldvd~P~ 293 (355)
T PRK13654 215 FALLMRAQPKLLKGWVNR-LWIRFFLLAVFATMYLRDHERPDFYEALGLDAREYDQEVIRKTNETSARVFPVVLDVDDPR 293 (355)
T ss_pred HHHHHhcCchhhcchHHH-HHHHHHHHHHHhheeeecccchHHHHHhCCCHHHhhHHHHHHhhHHHHhhCCeeecCCChH
Confidence 344556677 3333333 5555666666666666677789999999999877666666667778888888763 33577
Q ss_pred HHHHHHHHHHHHHHcC
Q psy5201 79 LHDKFVKLNEAYSILN 94 (244)
Q Consensus 79 ~~~~f~~i~~Ay~vL~ 94 (244)
-..+...+.++...|.
T Consensus 294 F~~~L~~~~~~n~~l~ 309 (355)
T PRK13654 294 FYARLERCVENNEKLR 309 (355)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6777777777777665
No 91
>CHL00185 ycf59 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=64.70 E-value=2.8 Score=38.04 Aligned_cols=93 Identities=12% Similarity=0.099 Sum_probs=63.1
Q ss_pred ccccccccC--CCccCccchhhhhhcccccccccCCCCCccCcccccccCCCCCHHHHHHHHHHHHHhhCCCCC-CCChH
Q psy5201 2 YSHLCSCMK--TNTFNSKSAFFLFNRTGLCCNQRYSSGQDHTHYEILELERNCSPKEIRSAFIRLSKQFHPDKN-PSNPA 78 (244)
Q Consensus 2 ~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Y~iLgv~~~a~~~eIk~ay~~l~~~~HPD~~-~~~~~ 78 (244)
|+.+..|+| ++.|... +++.|-++++...+-......+++|+.|||++..-..+|-+.=.+.+.+.-|-.. -++|.
T Consensus 211 F~almraqP~ll~g~~~k-LW~RFFLlsVfaTmyl~d~~R~~Fy~alGld~~~yD~~Vi~~Tn~~a~rvFP~~Ldvd~P~ 289 (351)
T CHL00185 211 FAALLKSQPHLLNGWKAR-LWCRFFLLSVFATMYLNDLQRSDFYAAIGLDARQFDMHVIRKTNESAARLFPVVLDVDNPK 289 (351)
T ss_pred HHHHHhcChhhhhhHHHH-HHHHHHHHHHHHHheehhcchHHHHHHhCCCHHHhhHHHHHHhhHHHHhhCCeeecCCCHH
Confidence 344556666 3333333 5555555566666556667789999999999877666666666778888888763 34577
Q ss_pred HHHHHHHHHHHHHHcCC
Q psy5201 79 LHDKFVKLNEAYSILND 95 (244)
Q Consensus 79 ~~~~f~~i~~Ay~vL~d 95 (244)
-..+...+..++..|..
T Consensus 290 F~~~L~~~~~~n~~l~~ 306 (351)
T CHL00185 290 FFKYLDQCACANLKLIE 306 (351)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 77778888888877753
No 92
>cd01047 ACSF Aerobic Cyclase System Fe-containing subunit (ACSF), ferritin-like diiron-binding domain. Aerobic Cyclase System, Fe-containing subunit (ACSF) is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrivivax gelatinosus acsF codes for a conserved, putative binuclear iron-cluster-containing protein involved in aerobic oxidative cyclization of Mg-protoporphyrin IX monomethyl ester. AcsF and homologs have a leucine zipper and two copies of the conserved glutamate and histidine residues predicted to act as ligands for iron in the Ex(29-35)DExRH motifs. Several homologs of AcsF are found in a wide range of photosynthetic organisms, including Chlamydomonas reinhardtii Crd1 and Pharbitis nil PNZIP, suggesting that this aerobic oxidative cyclization mechanism is conserved from bacteria to plants.
Probab=64.55 E-value=4.5 Score=36.34 Aligned_cols=92 Identities=15% Similarity=0.147 Sum_probs=62.0
Q ss_pred ccccccccC--CCccCccchhhhhhcccccccccCCCCCccCcccccccCCCCCHHHHHHHHHHHHHhhCCCCC-CCChH
Q psy5201 2 YSHLCSCMK--TNTFNSKSAFFLFNRTGLCCNQRYSSGQDHTHYEILELERNCSPKEIRSAFIRLSKQFHPDKN-PSNPA 78 (244)
Q Consensus 2 ~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Y~iLgv~~~a~~~eIk~ay~~l~~~~HPD~~-~~~~~ 78 (244)
|+.+..|+| ++.|... +++.|-++++...+-......+++|+.|||++..-..+|-+.=.+.+.+.-|-.. -++|.
T Consensus 195 F~~lmrsqP~ll~~~~~k-LW~RFFLlsVfaTmyl~d~~R~~Fy~alGld~~~yD~~Vi~~Tn~~s~rvFP~~Ldvd~P~ 273 (323)
T cd01047 195 FAALLRAQPHLLNDGKNK-LWIRFFLLSVYATMYLNDHQRPDFYEALGLDTTEFDMHVIRETNETAARVFPAVLDVDNPE 273 (323)
T ss_pred HHHHHhcChhhhhhHHHH-HHHHHHHHHHHHhheeeccchHHHHHHhCCCHHHhhHHHHHHhhHHHHhhCCeeecCCChH
Confidence 344556666 2333333 5555556666666666677789999999999877666666666778888888763 33577
Q ss_pred HHHHHHHHHHHHHHcC
Q psy5201 79 LHDKFVKLNEAYSILN 94 (244)
Q Consensus 79 ~~~~f~~i~~Ay~vL~ 94 (244)
-..+...+.++...|.
T Consensus 274 F~~~L~~~~~~n~~l~ 289 (323)
T cd01047 274 FRRGLDRLVDLNLKLE 289 (323)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6677777777776664
No 93
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=64.42 E-value=59 Score=27.45 Aligned_cols=27 Identities=15% Similarity=-0.116 Sum_probs=14.3
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHh
Q psy5201 163 TLSKATLVMLLIGVATGALGLQILAVQ 189 (244)
Q Consensus 163 ~~s~~~~v~~~~~~~~~g~~~~~~~~~ 189 (244)
.+.+|.++.-++.|+++.+++..+.++
T Consensus 45 ~~~~~~~i~qlInFlIlv~lL~k~l~k 71 (205)
T PRK06231 45 FPNFWVFIAHLIAFSILLLLGIFLFWK 71 (205)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556665555555555555555543
No 94
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=63.17 E-value=71 Score=26.02 Aligned_cols=14 Identities=21% Similarity=0.344 Sum_probs=5.7
Q ss_pred hchhhHHHHHHHHH
Q psy5201 199 VNSREMEISQNLMN 212 (244)
Q Consensus 199 ~d~~~~~~~~~~~~ 212 (244)
|+++...+...+.+
T Consensus 47 l~~R~~~I~~~l~~ 60 (175)
T PRK14472 47 LEEREKGIQSSIDR 60 (175)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444443333
No 95
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=62.02 E-value=60 Score=23.77 Aligned_cols=15 Identities=20% Similarity=0.217 Sum_probs=10.7
Q ss_pred HHHHHHHHhhCCCCC
Q psy5201 227 DRFAKRYQESYPYRR 241 (244)
Q Consensus 227 e~~~~~~~~~~~~~~ 241 (244)
..+.++++.+..+||
T Consensus 72 ~~V~d~L~q~gdlRd 86 (87)
T PF10883_consen 72 DSVIDQLQQHGDLRD 86 (87)
T ss_pred HHHHHHHHHcCCCCC
Confidence 336688888887776
No 96
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=61.80 E-value=63 Score=26.08 Aligned_cols=67 Identities=6% Similarity=0.111 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhchhchhhhchhhHH-----HHHHHHHHHHHHh-hhhhHHHHHHHHHHHHhhC
Q psy5201 171 MLLIGVATGALGLQILAVQYSKTFPRNVVNSREME-----ISQNLMNARNDAK-KYDLQENIDRFAKRYQESY 237 (244)
Q Consensus 171 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~~~~~r~~ar-~~~~~~q~e~~~~~~~~~~ 237 (244)
.+++++.++.+++....+++....++.+|.-.+-. +....++.++-.+ ...++++++.+++..+..+
T Consensus 8 ~~l~iilli~~~~~~~kl~kl~r~Y~~lm~g~~~~~lE~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 80 (151)
T PF14584_consen 8 LVLVIILLILIIILNIKLRKLKRRYDALMRGKDGKNLEDLLNELFDQIDELKEELEELEKRIEELEEKLRNCV 80 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34444444555566666777777777676544442 2233333333222 2244556666666665543
No 97
>TIGR02029 AcsF magnesium-protoporphyrin IX monomethyl ester aerobic oxidative cyclase. This model respresents the oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under aerobic conditions. This enzyme is believed to utilize a binuclear iron center and molecular oxygen. There are two isoforms of this enzyme in some plants and cyanobacterai which are differentially regulated based on the levels of copper and oxygen. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under aerobic conditions (a separate enzyme, BchE, acts under anaerobic conditions). This enzyme is found in plants, cyanobacteria and other photosynthetic bacteria.
Probab=60.38 E-value=3.8 Score=37.01 Aligned_cols=92 Identities=13% Similarity=0.135 Sum_probs=61.3
Q ss_pred ccccccccC--CCccCccchhhhhhcccccccccCCCCCccCcccccccCCCCCHHHHHHHHHHHHHhhCCCCC-CCChH
Q psy5201 2 YSHLCSCMK--TNTFNSKSAFFLFNRTGLCCNQRYSSGQDHTHYEILELERNCSPKEIRSAFIRLSKQFHPDKN-PSNPA 78 (244)
Q Consensus 2 ~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Y~iLgv~~~a~~~eIk~ay~~l~~~~HPD~~-~~~~~ 78 (244)
|+.+..|+| ++.|... +++.|-++++...+-......+++|+.|||++.--..+|-+.=.+.+.+.-|-.. -++|.
T Consensus 205 F~~lmrsqP~ll~g~~~k-LW~RFFLLsVfaTmyl~d~~R~~Fy~alGld~~~yD~~Vi~~Tne~s~rvFP~~Ldvd~P~ 283 (337)
T TIGR02029 205 FAALMRSQPQLLNNWKAK-LWSRFFLLSVYSTMYLRDHQRPGFYEALGLDATDFDLQVFRNTNETSGRIFPMTLNTEHPR 283 (337)
T ss_pred HHHHHhcChhhhhhHHHH-HHHHHHHHHHHHHHhhhhcccHHHHHHhCCCHHHhhHHHHHHhhHHHHhhCCeeecCCCHH
Confidence 344556666 3334333 4555555566555556667789999999999876556666666777888888763 33577
Q ss_pred HHHHHHHHHHHHHHcC
Q psy5201 79 LHDKFVKLNEAYSILN 94 (244)
Q Consensus 79 ~~~~f~~i~~Ay~vL~ 94 (244)
-..+...+..+...|.
T Consensus 284 F~~~L~~~~~~n~~l~ 299 (337)
T TIGR02029 284 FRRLLDRMAGYSEKIS 299 (337)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7777777777777664
No 98
>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]
Probab=60.06 E-value=71 Score=25.83 Aligned_cols=19 Identities=21% Similarity=0.400 Sum_probs=9.9
Q ss_pred hhchhhHHHHHHHHHHHHH
Q psy5201 198 VVNSREMEISQNLMNARND 216 (244)
Q Consensus 198 ~~d~~~~~~~~~~~~~r~~ 216 (244)
.++++...|...+.+++..
T Consensus 34 ~l~~R~~~I~~~l~~A~~~ 52 (161)
T COG0711 34 ALDERQAKIADDLAEAERL 52 (161)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4455555555555554443
No 99
>COG3167 PilO Tfp pilus assembly protein PilO [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=59.80 E-value=64 Score=27.25 Aligned_cols=67 Identities=15% Similarity=0.151 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhchhchhhhchhhHHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHhhC
Q psy5201 169 LVMLLIGVATGALGLQILAVQYSKTFPRNVVNSREMEISQNLMNARNDAK-KYDLQENIDRFAKRYQESY 237 (244)
Q Consensus 169 ~v~~~~~~~~~g~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~r~~ar-~~~~~~q~e~~~~~~~~~~ 237 (244)
++.+++++.++|+++++.......+ .+.++.+.++....+..-..++. -+.++.|+..+++++..-+
T Consensus 26 v~~lL~~~~V~~lGy~f~~s~k~ee--l~~~~~eEe~LKs~~q~K~~~aanL~~lr~Ql~emee~~~~ll 93 (211)
T COG3167 26 VFCLLAVAAVLGLGYAFYLSGKLEE--LEELEAEEEELKSTYQQKAIQAANLEALRAQLAEMEERFDILL 93 (211)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHH--HHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444443333222 23444455555555544444433 4466667777776665433
No 100
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=59.55 E-value=88 Score=24.97 Aligned_cols=16 Identities=19% Similarity=-0.025 Sum_probs=7.9
Q ss_pred hhHHHHHHHHHHHHHH
Q psy5201 166 KATLVMLLIGVATGAL 181 (244)
Q Consensus 166 ~~~~v~~~~~~~~~g~ 181 (244)
.|.++.++++++++..
T Consensus 5 ~w~~i~f~i~l~~l~~ 20 (159)
T PRK09173 5 FWAFVGLVLFLALVVY 20 (159)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4555555554444433
No 101
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=59.48 E-value=89 Score=24.92 Aligned_cols=41 Identities=22% Similarity=0.293 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchhchhhhchhhHHHHHHHHH
Q psy5201 168 TLVMLLIGVATGALGLQILAVQYSKTFPRNVVNSREMEISQNLMN 212 (244)
Q Consensus 168 ~~v~~~~~~~~~g~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 212 (244)
+++..++.|+++.+++..+.++.. ...++++...+...+.+
T Consensus 7 ~~~~~~inF~il~~iL~~f~~kpi----~~~l~~R~~~I~~~l~~ 47 (159)
T PRK13461 7 TIIATIINFIILLLILKHFFFDKI----KAVIDSRQSEIDNKIEK 47 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHH----HHHHHHHHHHHHHHHHH
Confidence 444444444444444444444332 22334444444444443
No 102
>COG1422 Predicted membrane protein [Function unknown]
Probab=58.89 E-value=83 Score=26.68 Aligned_cols=23 Identities=4% Similarity=0.199 Sum_probs=11.1
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHH
Q psy5201 210 LMNARNDAKKYDLQENIDRFAKR 232 (244)
Q Consensus 210 ~~~~r~~ar~~~~~~q~e~~~~~ 232 (244)
+++..+.|++.+..+.++++++.
T Consensus 84 fq~e~~eA~~~~d~~~lkkLq~~ 106 (201)
T COG1422 84 FQKEFREAQESGDMKKLKKLQEK 106 (201)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHH
Confidence 34444445555555555554433
No 103
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=58.13 E-value=95 Score=24.91 Aligned_cols=20 Identities=20% Similarity=-0.082 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy5201 168 TLVMLLIGVATGALGLQILA 187 (244)
Q Consensus 168 ~~v~~~~~~~~~g~~~~~~~ 187 (244)
.++..++.|+++.+++..+.
T Consensus 10 ~~~~~~i~Flil~~ll~~~l 29 (164)
T PRK14471 10 LFFWQTILFLILLLLLAKFA 29 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 33333333433333333333
No 104
>PLN02508 magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase
Probab=56.36 E-value=6.6 Score=35.71 Aligned_cols=92 Identities=16% Similarity=0.158 Sum_probs=60.4
Q ss_pred ccccccccC--CCccCccchhhhhhcccccccccCCCCCccCcccccccCCCCCHHHHHHHHHHHHHhhCCCCC-CCChH
Q psy5201 2 YSHLCSCMK--TNTFNSKSAFFLFNRTGLCCNQRYSSGQDHTHYEILELERNCSPKEIRSAFIRLSKQFHPDKN-PSNPA 78 (244)
Q Consensus 2 ~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Y~iLgv~~~a~~~eIk~ay~~l~~~~HPD~~-~~~~~ 78 (244)
|+.+..|+| ++.|... +++.|-++++...+-......+++|+.|||++.--..+|-+.=.+.+.+.-|-.. -++|.
T Consensus 211 Fa~lmraqP~ll~g~~~k-LW~RFFLLsVfaTMyl~d~~R~~Fy~alGld~~~yD~~Vi~~Tne~s~rvFP~~Ldvd~P~ 289 (357)
T PLN02508 211 FSALLKAQPQFLNDWKAK-LWSRFFCLSVYVTMYLNDHQRTAFYEGIGLNTKQFNMHVIIETNRTTARIFPAVLDVENPE 289 (357)
T ss_pred HHHHHHcChhhhhhHHHH-HHHHHHHHHHHHHheeeccchHHHHHHhCCCHHHhhHHHHHHhhHHHHhhCCeeecCCCHH
Confidence 344555666 3333333 5555555666666656667789999999999876556666666777888888763 33576
Q ss_pred HHHHHHHHHHHHHHcC
Q psy5201 79 LHDKFVKLNEAYSILN 94 (244)
Q Consensus 79 ~~~~f~~i~~Ay~vL~ 94 (244)
-..+...+..+...|.
T Consensus 290 F~~~L~~~~~~n~~l~ 305 (357)
T PLN02508 290 FKRKLDRMVVINQKLV 305 (357)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6666677777666664
No 105
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=53.49 E-value=57 Score=21.89 Aligned_cols=13 Identities=15% Similarity=-0.123 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHHH
Q psy5201 172 LLIGVATGALGLQ 184 (244)
Q Consensus 172 ~~~~~~~~g~~~~ 184 (244)
++++.+++|+++.
T Consensus 23 ~il~~f~~G~llg 35 (68)
T PF06305_consen 23 LILIAFLLGALLG 35 (68)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 106
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=53.42 E-value=1e+02 Score=26.87 Aligned_cols=44 Identities=18% Similarity=0.144 Sum_probs=18.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhchhchhhhchhhHHHHHHHHHHH
Q psy5201 167 ATLVMLLIGVATGALGLQILAVQYSKTFPRNVVNSREMEISQNLMNAR 214 (244)
Q Consensus 167 ~~~v~~~~~~~~~g~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~r 214 (244)
|+++.-++.|+++..++..+.++.. ...|+++...|...++++.
T Consensus 6 ~t~~~qiInFlILv~lL~~fl~kPi----~~~l~eR~~~I~~~l~~Ae 49 (250)
T PRK14474 6 FTVVAQIINFLILVYLLRRFLYKPI----IQVMKKRQQRIANRWQDAE 49 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444443332 2234555555444444443
No 107
>PRK09458 pspB phage shock protein B; Provisional
Probab=52.37 E-value=83 Score=22.39 Aligned_cols=15 Identities=13% Similarity=0.275 Sum_probs=9.2
Q ss_pred hhHHHHHHHHHHHHh
Q psy5201 221 DLQENIDRFAKRYQE 235 (244)
Q Consensus 221 ~~~~q~e~~~~~~~~ 235 (244)
+++++++.+++-+..
T Consensus 53 rm~~RI~tLE~ILDa 67 (75)
T PRK09458 53 RMRERIQALEAILDA 67 (75)
T ss_pred HHHHHHHHHHHHHcc
Confidence 566666666665543
No 108
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=51.97 E-value=81 Score=22.14 Aligned_cols=24 Identities=13% Similarity=0.273 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHH
Q psy5201 207 SQNLMNARNDAKKYDLQENIDRFA 230 (244)
Q Consensus 207 ~~~~~~~r~~ar~~~~~~q~e~~~ 230 (244)
.....+.+.+........+++.+.
T Consensus 44 ~~en~~L~~ei~~l~~~~rIe~~A 67 (85)
T TIGR02209 44 QKEWRDLQLEVAELSRHERIEKIA 67 (85)
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHH
Confidence 333344444444444444555533
No 109
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=51.46 E-value=1.2e+02 Score=23.90 Aligned_cols=15 Identities=7% Similarity=-0.040 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHHH
Q psy5201 169 LVMLLIGVATGALGL 183 (244)
Q Consensus 169 ~v~~~~~~~~~g~~~ 183 (244)
++.-++.|+++.+++
T Consensus 10 ~~~qli~Flil~~~l 24 (141)
T PRK08476 10 MLATFVVFLLLIVIL 24 (141)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 110
>PF10041 DUF2277: Uncharacterized conserved protein (DUF2277); InterPro: IPR018735 Members of this family of hypothetical bacterial proteins have no known function.
Probab=51.41 E-value=77 Score=22.63 Aligned_cols=46 Identities=17% Similarity=0.257 Sum_probs=32.6
Q ss_pred CcccccccCCCCCHHHHHHHHHHHHHhhCCCCCCCChHHHHHHHHHH
Q psy5201 41 THYEILELERNCSPKEIRSAFIRLSKQFHPDKNPSNPALHDKFVKLN 87 (244)
Q Consensus 41 ~~Y~iLgv~~~a~~~eIk~ay~~l~~~~HPD~~~~~~~~~~~f~~i~ 87 (244)
|--.+.|+.|-++.+||..|=.+.+++..=-..| +....+.|..-+
T Consensus 4 nI~~L~~fePpaT~~EI~aAAlQyVRKvSG~~~P-s~an~eaF~~AV 49 (78)
T PF10041_consen 4 NIKTLRNFEPPATDEEIRAAALQYVRKVSGFRKP-SAANAEAFDRAV 49 (78)
T ss_pred chhhhcCCCCCCCHHHHHHHHHHHHHHHccCCCc-chhhHHHHHHHH
Confidence 3345668889999999999999999998665555 334445554433
No 111
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=50.90 E-value=1.3e+02 Score=24.44 Aligned_cols=16 Identities=13% Similarity=0.351 Sum_probs=6.6
Q ss_pred hhchhhHHHHHHHHHH
Q psy5201 198 VVNSREMEISQNLMNA 213 (244)
Q Consensus 198 ~~d~~~~~~~~~~~~~ 213 (244)
.|+++...+...+.++
T Consensus 44 ~l~~R~~~I~~~l~~A 59 (173)
T PRK13460 44 ALDERASGVQNDINKA 59 (173)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444333
No 112
>PF07271 Cytadhesin_P30: Cytadhesin P30/P32; InterPro: IPR009896 This family consists of several Mycoplasma species specific Cytadhesin P32 and P30 proteins. P30 has been found to be membrane associated and localised on the tip organelle. It is thought that it is important in cytadherence and virulence [].; GO: 0007157 heterophilic cell-cell adhesion, 0009405 pathogenesis, 0016021 integral to membrane
Probab=49.84 E-value=37 Score=30.08 Aligned_cols=26 Identities=15% Similarity=-0.038 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhchh
Q psy5201 169 LVMLLIGVATGALGLQILAVQYSKTF 194 (244)
Q Consensus 169 ~v~~~~~~~~~g~~~~~~~~~~~~~~ 194 (244)
.++++++++++|+.+....+++....
T Consensus 76 ~~G~~~v~liLgl~ig~p~~krkek~ 101 (279)
T PF07271_consen 76 SAGLLAVALILGLAIGIPIYKRKEKR 101 (279)
T ss_pred hhhHHHHHHHHHHhhcchhhhhhHHH
Confidence 44566666666777776666654333
No 113
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=49.18 E-value=1.4e+02 Score=24.18 Aligned_cols=16 Identities=31% Similarity=0.403 Sum_probs=6.7
Q ss_pred hhchhhHHHHHHHHHH
Q psy5201 198 VVNSREMEISQNLMNA 213 (244)
Q Consensus 198 ~~d~~~~~~~~~~~~~ 213 (244)
.++++...+...+.++
T Consensus 47 ~l~~R~~~I~~~l~~A 62 (174)
T PRK07352 47 ILEERREAILQALKEA 62 (174)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444333
No 114
>KOG4403|consensus
Probab=48.90 E-value=74 Score=30.26 Aligned_cols=35 Identities=9% Similarity=0.074 Sum_probs=14.7
Q ss_pred cccchh--HHHHHHHHHHH-HHHHHHHHHHhhhchhch
Q psy5201 162 ETLSKA--TLVMLLIGVAT-GALGLQILAVQYSKTFPR 196 (244)
Q Consensus 162 ~~~s~~--~~v~~~~~~~~-~g~~~~~~~~~~~~~~~~ 196 (244)
+...|| .|++.+++++. +|+++.|.-=+++.+..+
T Consensus 208 ~~~~n~~KD~iLv~lili~v~gcw~ay~Qnk~akehv~ 245 (575)
T KOG4403|consen 208 KTNHNWTKDFILVVLILIGVGGCWFAYRQNKKAKEHVN 245 (575)
T ss_pred CCCcchhhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHH
Confidence 345555 33444433333 344444433333444433
No 115
>PRK01844 hypothetical protein; Provisional
Probab=48.66 E-value=65 Score=22.74 Aligned_cols=30 Identities=3% Similarity=-0.125 Sum_probs=19.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhchhc
Q psy5201 166 KATLVMLLIGVATGALGLQILAVQYSKTFP 195 (244)
Q Consensus 166 ~~~~v~~~~~~~~~g~~~~~~~~~~~~~~~ 195 (244)
.|.++++.++..++|++..++..++.-+..
T Consensus 3 ~~~~I~l~I~~li~G~~~Gff~ark~~~k~ 32 (72)
T PRK01844 3 IWLGILVGVVALVAGVALGFFIARKYMMNY 32 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666666777777777777766655543
No 116
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=47.67 E-value=1.4e+02 Score=23.81 Aligned_cols=22 Identities=18% Similarity=0.108 Sum_probs=9.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q psy5201 167 ATLVMLLIGVATGALGLQILAV 188 (244)
Q Consensus 167 ~~~v~~~~~~~~~g~~~~~~~~ 188 (244)
+.++.-++.|+++.+++..+.+
T Consensus 9 ~~~~~~~inflil~~lL~~fl~ 30 (164)
T PRK14473 9 GLLIAQLINFLLLIFLLRTFLY 30 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444443
No 117
>PF09813 Coiled-coil_56: Coiled-coil domain-containing protein 56; InterPro: IPR018628 Members of this family of proteins have no known function.
Probab=46.27 E-value=33 Score=25.73 Aligned_cols=39 Identities=26% Similarity=0.268 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhchhchhhhchhhHHHHHH
Q psy5201 171 MLLIGVATGALGLQILAVQYSKTFPRNVVNSREMEISQN 209 (244)
Q Consensus 171 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 209 (244)
..+.+++++++++.+.+++........++|+.+.++...
T Consensus 51 N~~Tgl~L~~~v~gIY~YTi~sV~Qe~F~D~~eeeak~~ 89 (100)
T PF09813_consen 51 NLLTGLALGAFVVGIYAYTIYSVKQEDFLDELEEEAKAA 89 (100)
T ss_pred hHHHHHHHHHHHHHHHhheeeeechhhhHHHhhhHHHHh
Confidence 344444444555555555555555555777655444433
No 118
>PRK11677 hypothetical protein; Provisional
Probab=45.42 E-value=1.5e+02 Score=23.43 Aligned_cols=12 Identities=8% Similarity=0.033 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHH
Q psy5201 177 ATGALGLQILAV 188 (244)
Q Consensus 177 ~~~g~~~~~~~~ 188 (244)
+++|++++++..
T Consensus 10 livG~iiG~~~~ 21 (134)
T PRK11677 10 LVVGIIIGAVAM 21 (134)
T ss_pred HHHHHHHHHHHH
Confidence 333444444443
No 119
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=44.61 E-value=1.7e+02 Score=23.69 Aligned_cols=21 Identities=19% Similarity=-0.246 Sum_probs=11.9
Q ss_pred cchhHHHHHHHHHHHHHHHHH
Q psy5201 164 LSKATLVMLLIGVATGALGLQ 184 (244)
Q Consensus 164 ~s~~~~v~~~~~~~~~g~~~~ 184 (244)
..+|.++.++++++++.-+.+
T Consensus 6 ~~fwq~I~FlIll~ll~kfaw 26 (154)
T PRK06568 6 ESFWLAVSFVIFVYLIYRPAK 26 (154)
T ss_pred hHHHHHHHHHHHHHHHHHHhH
Confidence 346666666666666444433
No 120
>PF15145 DUF4577: Domain of unknown function (DUF4577)
Probab=43.55 E-value=55 Score=25.14 Aligned_cols=52 Identities=10% Similarity=0.010 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhchhchhhhchhhHHHHHHHHHHHHHHhhhhh
Q psy5201 169 LVMLLIGVATGALGLQILAVQYSKTFPRNVVNSREMEISQNLMNARNDAKKYDL 222 (244)
Q Consensus 169 ~v~~~~~~~~~g~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~r~~ar~~~~ 222 (244)
|+++++++++..+.+.+..|--.+... .||+..++....-+.+.+..+-+.+
T Consensus 64 fvglii~LivSLaLVsFvIFLiiQTgn--kMddvSrRL~aEgKdIdeLKKiN~m 115 (128)
T PF15145_consen 64 FVGLIIVLIVSLALVSFVIFLIIQTGN--KMDDVSRRLTAEGKDIDELKKINSM 115 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHheeeccc--hHHHHHHHHHhccCCHHHHHHHHHH
Confidence 555555555555555555444444443 7888887777666666655554443
No 121
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=43.32 E-value=1.8e+02 Score=25.11 Aligned_cols=21 Identities=19% Similarity=0.085 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy5201 168 TLVMLLIGVATGALGLQILAV 188 (244)
Q Consensus 168 ~~v~~~~~~~~~g~~~~~~~~ 188 (244)
+++.-++.|+++.+++..+.+
T Consensus 7 t~~~qiInFlil~~lL~kfl~ 27 (246)
T TIGR03321 7 TVIAQLINFLILVWLLKRFLY 27 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHhH
Confidence 344444444444444444443
No 122
>PRK00523 hypothetical protein; Provisional
Probab=42.63 E-value=1.2e+02 Score=21.41 Aligned_cols=28 Identities=7% Similarity=-0.231 Sum_probs=16.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhchh
Q psy5201 167 ATLVMLLIGVATGALGLQILAVQYSKTF 194 (244)
Q Consensus 167 ~~~v~~~~~~~~~g~~~~~~~~~~~~~~ 194 (244)
|.++++.+++.++|++..++..++.-+.
T Consensus 5 ~l~I~l~i~~li~G~~~Gffiark~~~k 32 (72)
T PRK00523 5 GLALGLGIPLLIVGGIIGYFVSKKMFKK 32 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555666666777777665554444
No 123
>PF07709 SRR: Seven Residue Repeat; InterPro: IPR011714 This repeat is found in some Plasmodium and Theileria proteins.
Probab=42.04 E-value=25 Score=16.57 Aligned_cols=13 Identities=46% Similarity=0.728 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHcC
Q psy5201 82 KFVKLNEAYSILN 94 (244)
Q Consensus 82 ~f~~i~~Ay~vL~ 94 (244)
.|..|..||+.|+
T Consensus 2 ~~~~V~~aY~~l~ 14 (14)
T PF07709_consen 2 KFEKVKNAYEQLS 14 (14)
T ss_pred cHHHHHHHHHhcC
Confidence 4677888888774
No 124
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=41.94 E-value=1.5e+02 Score=28.20 Aligned_cols=15 Identities=20% Similarity=0.386 Sum_probs=6.2
Q ss_pred hchhhHHHHHHHHHH
Q psy5201 199 VNSREMEISQNLMNA 213 (244)
Q Consensus 199 ~d~~~~~~~~~~~~~ 213 (244)
|+++...|...++++
T Consensus 30 l~~R~~~I~~~L~eA 44 (445)
T PRK13428 30 MAARQDTVRQQLAES 44 (445)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444333
No 125
>KOG4782|consensus
Probab=39.63 E-value=41 Score=24.96 Aligned_cols=43 Identities=7% Similarity=-0.155 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhchhchhhhchhhHHHHHHHHHHH
Q psy5201 169 LVMLLIGVATGALGLQILAVQYSKTFPRNVVNSREMEISQNLMNAR 214 (244)
Q Consensus 169 ~v~~~~~~~~~g~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~r 214 (244)
.+.+..+.+++.++.+|..++-.++ .++|+.+.+....-.++-
T Consensus 60 ~is~a~i~alViaIY~YTfYSikQE---rFLdEiddEaaAanaka~ 102 (108)
T KOG4782|consen 60 HISFAGIGALVIAIYGYTFYSIKQE---RFLDEIDDEAAAANAKAH 102 (108)
T ss_pred hhhhHHHHHHHHHhhhheeeehhHH---HHHHHHHHHHHhcChHHH
Confidence 3344444444444444444444443 477777766555444333
No 126
>COG3116 FtsL Cell division protein [Cell division and chromosome partitioning]
Probab=38.81 E-value=1.7e+02 Score=22.11 Aligned_cols=14 Identities=21% Similarity=0.382 Sum_probs=8.6
Q ss_pred HHHHhhCCCCCCCC
Q psy5201 231 KRYQESYPYRRPDS 244 (244)
Q Consensus 231 ~~~~~~~~~~~~~~ 244 (244)
+--.+.+.++.||+
T Consensus 84 ~iAreqL~M~~pd~ 97 (105)
T COG3116 84 SIAREQLKMKHPDP 97 (105)
T ss_pred HHHHHHhcCCCCCh
Confidence 33445677777774
No 127
>PF13314 DUF4083: Domain of unknown function (DUF4083)
Probab=38.74 E-value=1.2e+02 Score=20.42 Aligned_cols=13 Identities=15% Similarity=0.102 Sum_probs=6.0
Q ss_pred hhchhhHHHHHHH
Q psy5201 198 VVNSREMEISQNL 210 (244)
Q Consensus 198 ~~d~~~~~~~~~~ 210 (244)
.|+++=.++.+.+
T Consensus 43 ~~eqKLDrIIeLL 55 (58)
T PF13314_consen 43 SMEQKLDRIIELL 55 (58)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444443
No 128
>TIGR02596 Verrucomicrobium spinosum paralogous family TIGR02596. This model describes a nearly twenty member protein family unique to Verrucomicrobium spinosum. All members share a type IV pilin-like N-terminal leader sequence (TIGR02532). Sequences are from 207 to 248 in length. The function is unknown.
Probab=38.51 E-value=1.1e+02 Score=25.75 Aligned_cols=51 Identities=16% Similarity=0.146 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhchhchhhhchhhHHHHHHHHHHHHHHhhhhh
Q psy5201 172 LLIGVATGALGLQILAVQYSKTFPRNVVNSREMEISQNLMNARNDAKKYDL 222 (244)
Q Consensus 172 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~r~~ar~~~~ 222 (244)
+++++++++++..+.............++..-.+....+..+|..|-..+.
T Consensus 6 LLVVLaIiaILaaia~P~l~~~~~~~~L~~~a~~L~s~L~~AR~~Ai~~~~ 56 (195)
T TIGR02596 6 LLVVIAIIAVLMALSTPVVNQVLAAQQLGSSATRLANELAAAALLAQRENR 56 (195)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 344444443333333332222223345666677777788888777765543
No 129
>TIGR01708 typeII_sec_gspH general secretion pathway protein H. This model represents GspH, protein H of the main terminal branch of the general secretion pathway, also called type II secretion. It transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.
Probab=38.30 E-value=1e+02 Score=23.87 Aligned_cols=26 Identities=12% Similarity=0.128 Sum_probs=17.0
Q ss_pred hhhhchhhHHHHHHHHHHHHHHhhhh
Q psy5201 196 RNVVNSREMEISQNLMNARNDAKKYD 221 (244)
Q Consensus 196 ~~~~d~~~~~~~~~~~~~r~~ar~~~ 221 (244)
...++....+....+..++..|...+
T Consensus 35 ~~~~~~~a~~l~~~l~~ar~~A~~~~ 60 (143)
T TIGR01708 35 TKSLDQVAGRLAARLRLAQTSARATG 60 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 33556666677777777777776543
No 130
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=38.06 E-value=1.7e+02 Score=21.92 Aligned_cols=7 Identities=43% Similarity=0.510 Sum_probs=2.5
Q ss_pred hHHHHHH
Q psy5201 222 LQENIDR 228 (244)
Q Consensus 222 ~~~q~e~ 228 (244)
+++++++
T Consensus 53 L~~eI~~ 59 (105)
T PRK00888 53 LFAEIDD 59 (105)
T ss_pred HHHHHHH
Confidence 3333333
No 131
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=37.17 E-value=1.1e+02 Score=20.48 Aligned_cols=23 Identities=17% Similarity=0.047 Sum_probs=13.3
Q ss_pred cchhHHHHHHHHHHHHHHHHHHH
Q psy5201 164 LSKATLVMLLIGVATGALGLQIL 186 (244)
Q Consensus 164 ~s~~~~v~~~~~~~~~g~~~~~~ 186 (244)
.+...++.++++++++.+++...
T Consensus 18 ~pl~l~il~~f~~G~llg~l~~~ 40 (68)
T PF06305_consen 18 LPLGLLILIAFLLGALLGWLLSL 40 (68)
T ss_pred chHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666666654444444
No 132
>PRK10506 hypothetical protein; Provisional
Probab=37.14 E-value=1.1e+02 Score=24.67 Aligned_cols=55 Identities=15% Similarity=0.084 Sum_probs=29.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhchhchhhhchhhHHHHHHHHHHHHHHhhhh
Q psy5201 167 ATLVMLLIGVATGALGLQILAVQYSKTFPRNVVNSREMEISQNLMNARNDAKKYD 221 (244)
Q Consensus 167 ~~~v~~~~~~~~~g~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~r~~ar~~~ 221 (244)
++++=++++++++++++.........-..+..++..-.+....+..++..|-..+
T Consensus 11 FTLiEllvvl~Ii~il~~~a~p~~~~~~~~~~~~~~~~~l~~~l~~ar~~A~~~~ 65 (162)
T PRK10506 11 YTLIELLVVMTIVSILSAWGLYGWQRWQQRQRLWQTAQQLLDFLLRLQEDANWHN 65 (162)
T ss_pred eeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3344445555544444433333322223344566666777777777777765443
No 133
>KOG3442|consensus
Probab=36.43 E-value=46 Score=26.05 Aligned_cols=33 Identities=18% Similarity=0.213 Sum_probs=28.8
Q ss_pred cccccccCCCCCHHHHHHHHHHHHHhhCCCCCC
Q psy5201 42 HYEILELERNCSPKEIRSAFIRLSKQFHPDKNP 74 (244)
Q Consensus 42 ~Y~iLgv~~~a~~~eIk~ay~~l~~~~HPD~~~ 74 (244)
--+||+|++..+.++|.+.|-.|-....+.+.+
T Consensus 61 a~qILnV~~~ln~eei~k~yehLFevNdkskGG 93 (132)
T KOG3442|consen 61 AQQILNVKEPLNREEIEKRYEHLFEVNDKSKGG 93 (132)
T ss_pred HhhHhCCCCCCCHHHHHHHHHHHHhccCcccCc
Confidence 347999999999999999999999888777665
No 134
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=33.81 E-value=31 Score=24.92 Aligned_cols=20 Identities=15% Similarity=0.154 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHhhhhhH
Q psy5201 204 MEISQNLMNARNDAKKYDLQ 223 (244)
Q Consensus 204 ~~~~~~~~~~r~~ar~~~~~ 223 (244)
+++-...++.+++|.-.|+|
T Consensus 37 rkId~li~RIreraEDSGnE 56 (81)
T PF00558_consen 37 RKIDRLIERIRERAEDSGNE 56 (81)
T ss_dssp --CHHHHHHHHCTTTCCHCT
T ss_pred HhHHHHHHHHHcccccCCCC
Confidence 66777788888888755544
No 135
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=33.76 E-value=2.6e+02 Score=22.70 Aligned_cols=12 Identities=8% Similarity=-0.203 Sum_probs=4.6
Q ss_pred hHHHHHHHHHHH
Q psy5201 167 ATLVMLLIGVAT 178 (244)
Q Consensus 167 ~~~v~~~~~~~~ 178 (244)
|.++.+++++++
T Consensus 15 w~iI~FlILy~l 26 (155)
T PRK06569 15 WLIVTFGLLYIF 26 (155)
T ss_pred HHHHHHHHHHHH
Confidence 433333333333
No 136
>PF02060 ISK_Channel: Slow voltage-gated potassium channel; InterPro: IPR000369 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Two types of beta subunit (KCNE and KCNAB) are presently known to associate with voltage-gated alpha subunits (Kv, KCNQ and eag-like). However, not all combinations of alpha and beta subunits are possible. The KCNE family of K+ channel subunits are membrane glycoproteins that possess a single transmembrane (TM) domain. They share no structural relationship with the alpha subunit proteins, which possess pore forming domains. The subunits appear to have a regulatory function, modulating the kinetics and voltage dependence of the alpha subunits of voltage-dependent K+ channels. KCNE subunits are formed from short polypeptides of ~130 amino acids, and are divided into five subfamilies: KCNE1 (MinK/IsK), KCNE2 (MiRP1), KCNE3 (MiRP2), KCNE4 (MiRP3) and KCNE1L (AMMECR2). ; GO: 0005249 voltage-gated potassium channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2K21_A.
Probab=33.64 E-value=1.4e+02 Score=23.38 Aligned_cols=30 Identities=17% Similarity=0.082 Sum_probs=20.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhchhc
Q psy5201 166 KATLVMLLIGVATGALGLQILAVQYSKTFP 195 (244)
Q Consensus 166 ~~~~v~~~~~~~~~g~~~~~~~~~~~~~~~ 195 (244)
+..++.+++++.++|+++.+++-++.....
T Consensus 46 YIL~vmgfFgff~~gImlsyvRSKK~E~s~ 75 (129)
T PF02060_consen 46 YILVVMGFFGFFTVGIMLSYVRSKKREHSH 75 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH----
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 455677777888888888888877655443
No 137
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=33.53 E-value=2.6e+02 Score=22.56 Aligned_cols=17 Identities=18% Similarity=-0.269 Sum_probs=9.3
Q ss_pred ccchhHHHHHHHHHHHH
Q psy5201 163 TLSKATLVMLLIGVATG 179 (244)
Q Consensus 163 ~~s~~~~v~~~~~~~~~ 179 (244)
...+|.++.++++++++
T Consensus 9 ~~~~w~~i~f~il~~iL 25 (167)
T PRK14475 9 NPEFWVGAGLLIFFGIL 25 (167)
T ss_pred chHHHHHHHHHHHHHHH
Confidence 44566666555555443
No 138
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=32.80 E-value=2.6e+02 Score=22.84 Aligned_cols=66 Identities=15% Similarity=0.082 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhchhchhhhchhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Q psy5201 166 KATLVMLLIGVATGALGLQILAVQYSKTFPRNVVNSREMEISQNLMNARNDAKKYDLQENIDRFAKRYQES 236 (244)
Q Consensus 166 ~~~~v~~~~~~~~~g~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~r~~ar~~~~~~q~e~~~~~~~~~ 236 (244)
+++.+...+.|+++.+++.++.+...-.. .++++...+...++++.. .+...++.++..++++.+.
T Consensus 26 ~~t~~~~~inflil~~iL~~f~~~~~v~~---~L~~R~~~I~~~l~~Ae~--~~~eA~~~l~e~e~~L~~A 91 (184)
T PRK13455 26 SNTDFVVTLAFLLFIGILVYFKVPGMIGG---MLDKRAEGIRSELEEARA--LREEAQTLLASYERKQREV 91 (184)
T ss_pred cchHHHHHHHHHHHHHHHHHHhccHHHHH---HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
No 139
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=32.48 E-value=2.7e+02 Score=22.46 Aligned_cols=30 Identities=10% Similarity=-0.065 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHhhhchhchhhhchhhH
Q psy5201 175 GVATGALGLQILAVQYSKTFPRNVVNSREM 204 (244)
Q Consensus 175 ~~~~~g~~~~~~~~~~~~~~~~~~~d~~~~ 204 (244)
+.+++|-.+.+-.-+++.-.+++.+.++.+
T Consensus 17 ~~~flgYciYFD~KRR~dPdFRkkLr~rr~ 46 (148)
T TIGR00985 17 AAAFLGYAIYFDYKRRNDPDFRKKLRRRRK 46 (148)
T ss_pred HHHHHHHHHhhhhhhccCHHHHHHHHHHHH
Confidence 333333333333334444444444444444
No 140
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=31.94 E-value=2.1e+02 Score=20.98 Aligned_cols=12 Identities=42% Similarity=0.055 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHH
Q psy5201 177 ATGALGLQILAV 188 (244)
Q Consensus 177 ~~~g~~~~~~~~ 188 (244)
+++++++.|+++
T Consensus 12 ~v~~~i~~y~~~ 23 (87)
T PF10883_consen 12 AVVALILAYLWW 23 (87)
T ss_pred HHHHHHHHHHHH
Confidence 333344444443
No 141
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=31.23 E-value=2e+02 Score=20.72 Aligned_cols=29 Identities=10% Similarity=0.123 Sum_probs=12.0
Q ss_pred chhhHHHHHHHHHHHHHHhhhhhHHHHHH
Q psy5201 200 NSREMEISQNLMNARNDAKKYDLQENIDR 228 (244)
Q Consensus 200 d~~~~~~~~~~~~~r~~ar~~~~~~q~e~ 228 (244)
+....+......+.+-.......-.++|+
T Consensus 48 ~~~~~~l~~e~~~L~lE~~~l~~~~rIe~ 76 (97)
T PF04999_consen 48 EKEIDQLQEENERLRLEIATLSSPSRIER 76 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCHHHHHH
Confidence 33333333344444444444444444444
No 142
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=31.03 E-value=2.8e+02 Score=22.39 Aligned_cols=19 Identities=16% Similarity=0.459 Sum_probs=9.9
Q ss_pred hhhhchhhHHHHHHHHHHH
Q psy5201 196 RNVVNSREMEISQNLMNAR 214 (244)
Q Consensus 196 ~~~~d~~~~~~~~~~~~~r 214 (244)
...|+++...|...++++.
T Consensus 30 ~~~LeeR~~~I~~~Ld~Ae 48 (154)
T PRK06568 30 LNSLDAKILEVQEKVLKAE 48 (154)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445555555555554443
No 143
>KOG4007|consensus
Probab=31.03 E-value=33 Score=28.94 Aligned_cols=47 Identities=15% Similarity=0.114 Sum_probs=20.1
Q ss_pred hhhchhchhhhchhhH---HHHHHHHHHHHHHhhhhh-HHHHHHHHHHHHh
Q psy5201 189 QYSKTFPRNVVNSREM---EISQNLMNARNDAKKYDL-QENIDRFAKRYQE 235 (244)
Q Consensus 189 ~~~~~~~~~~~d~~~~---~~~~~~~~~r~~ar~~~~-~~q~e~~~~~~~~ 235 (244)
+...+.+.+.+++.+. -....+.+.|+++...+. +.+++|-..+++|
T Consensus 166 ~~~yq~hnded~ed~~s~ana~d~~g~~rAraNVLnRVe~~Q~rWk~qVqE 216 (229)
T KOG4007|consen 166 KANYQEHNDEDDEDSPSPANAADNLGELRARANVLNRVEHAQQRWKLQVQE 216 (229)
T ss_pred hhhHHHhcccccccCCCccchhhhcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555444554222 233444555555533322 2244554433333
No 144
>PF12434 Malate_DH: Malate dehydrogenase enzyme
Probab=29.85 E-value=66 Score=18.26 Aligned_cols=18 Identities=11% Similarity=0.351 Sum_probs=15.1
Q ss_pred CHHHHHHHHHHHHHhhCC
Q psy5201 53 SPKEIRSAFIRLSKQFHP 70 (244)
Q Consensus 53 ~~~eIk~ay~~l~~~~HP 70 (244)
..++.|.+.|+.++.||-
T Consensus 9 ~~~~~r~~lR~AALeYHe 26 (28)
T PF12434_consen 9 NKEDKRAQLRQAALEYHE 26 (28)
T ss_pred chHHHHHHHHHHHHHhcc
Confidence 347789999999999994
No 145
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=29.05 E-value=3.1e+02 Score=22.17 Aligned_cols=12 Identities=25% Similarity=0.141 Sum_probs=4.5
Q ss_pred hHHHHHHHHHHH
Q psy5201 167 ATLVMLLIGVAT 178 (244)
Q Consensus 167 ~~~v~~~~~~~~ 178 (244)
|.++.+++++++
T Consensus 23 ~~~i~Flil~~l 34 (175)
T PRK14472 23 WTAVTFVIVLLI 34 (175)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 146
>cd01780 PLC_epsilon_RA Ubiquitin-like domain of Phosphatidylinositide-specific phospholipase. PLC_epsilon_RA Phosphatidylinositide-specific phospholipase C (PLC) is a signaling enzyme that hydrolyzes membrane phospholipids to generate inositol triphosphate. PLC-epsilon represents a novel forth class of PLC that has a PLC catalytic core domain, a CDC25 guanine nucleotide exchange factor domain and two RA (Ras-association) domains of which the second is critical for Ras activation of the enzyme.
Probab=28.60 E-value=72 Score=23.65 Aligned_cols=36 Identities=14% Similarity=0.304 Sum_probs=26.9
Q ss_pred CccCcccccccCCCCCHHHHHHHHHHHHHhhCCCCC
Q psy5201 38 QDHTHYEILELERNCSPKEIRSAFIRLSKQFHPDKN 73 (244)
Q Consensus 38 ~~~~~Y~iLgv~~~a~~~eIk~ay~~l~~~~HPD~~ 73 (244)
..-.||-||.++..+|..+|-+.=...+++-+||-+
T Consensus 9 s~dqP~~il~a~~~STa~Dvi~Qal~KA~rs~~~~~ 44 (93)
T cd01780 9 SPDQPYAILRAPRVSTAQDVIQQTLCKARRSNPNPS 44 (93)
T ss_pred CCCCCeeEEEccccccHHHHHHHHHHHhccCCCCcc
Confidence 355799999999999988876655555666677654
No 147
>PHA02844 putative transmembrane protein; Provisional
Probab=27.91 E-value=2.2e+02 Score=20.16 Aligned_cols=51 Identities=16% Similarity=0.096 Sum_probs=22.5
Q ss_pred CCchHHHHHHHHhcccccccccccccccccccchhHHHHHHHHHHHHHHHHHHH
Q psy5201 133 PENWKDYYDFAAQMKRNESIHVPKFLHKFETLSKATLVMLLIGVATGALGLQIL 186 (244)
Q Consensus 133 ~~~we~~~~~~~~~~~~~~~~~p~~~~~~~~~s~~~~v~~~~~~~~~g~~~~~~ 186 (244)
.+|++.|-+.......+.... |.. +....+.|.++.++++++++++++.+.
T Consensus 17 DdDFnnFI~vVksVLtd~~~s-~~~--~~~~~~~~~~~ii~i~~v~~~~~~~fl 67 (75)
T PHA02844 17 NEDFNNFIDVVKSVLSDDYDG-VNK--NNVCSSSTKIWILTIIFVVFATFLTFL 67 (75)
T ss_pred hHHHHHHHHHHHHHHcCCCCC-ccc--cccCChhHHHHHHHHHHHHHHHHHHHH
Confidence 456777777666543333211 111 223334444444444444444444333
No 148
>PF07960 CBP4: CBP4; InterPro: IPR012420 The CBP4 gene in Saccharomyces cerevisiae is essential for the expression and activity of ubiquinol-cytochrome c reductase [, ]. This family appears to be fungal specific.
Probab=27.66 E-value=1.4e+02 Score=23.50 Aligned_cols=18 Identities=11% Similarity=0.289 Sum_probs=9.8
Q ss_pred hhchhhHHHHHHHHHHHH
Q psy5201 198 VVNSREMEISQNLMNARN 215 (244)
Q Consensus 198 ~~d~~~~~~~~~~~~~r~ 215 (244)
+...-+.++...+.+.|+
T Consensus 36 L~~r~sPELrkr~~~~r~ 53 (128)
T PF07960_consen 36 LFKRYSPELRKRYLENRE 53 (128)
T ss_pred HHHhcCHHHHHHHHHhHH
Confidence 455556666555555444
No 149
>KOG3312|consensus
Probab=27.52 E-value=22 Score=28.82 Aligned_cols=19 Identities=11% Similarity=0.286 Sum_probs=13.2
Q ss_pred hhhHHHHHHHHHHHHhhCC
Q psy5201 220 YDLQENIDRFAKRYQESYP 238 (244)
Q Consensus 220 ~~~~~q~e~~~~~~~~~~~ 238 (244)
....+.+||.+++++++++
T Consensus 63 k~~kkKieR~Ee~LK~~nR 81 (186)
T KOG3312|consen 63 KSKKKKIERVEEKLKNNNR 81 (186)
T ss_pred hHHHHHHHHHHHHHhcccc
Confidence 3445577888888887765
No 150
>TIGR02743 TraW type-F conjugative transfer system protein TraW. This protein is an essential component of the F-type conjugative transfer sytem for plasmid DNA transfer and has been shown to be localized to the periplasm.
Probab=27.40 E-value=2.9e+02 Score=23.41 Aligned_cols=19 Identities=26% Similarity=0.326 Sum_probs=12.0
Q ss_pred hhHHHHHHHHHHHHhhCCC
Q psy5201 221 DLQENIDRFAKRYQESYPY 239 (244)
Q Consensus 221 ~~~~q~e~~~~~~~~~~~~ 239 (244)
.+++-.+.+++|+.++..+
T Consensus 52 el~~~~~~~~~r~~~~~~r 70 (202)
T TIGR02743 52 ELKAMQQRFQSRVLEHVKR 70 (202)
T ss_pred hHHHHHHHHHHHHHHhccC
Confidence 3444555677888777753
No 151
>PHA02975 hypothetical protein; Provisional
Probab=27.08 E-value=2.2e+02 Score=19.84 Aligned_cols=47 Identities=15% Similarity=0.242 Sum_probs=21.8
Q ss_pred CCchHHHHHHHHhcccccccccccccccccccchhHHHHHHHHHHHHHHHHHHH
Q psy5201 133 PENWKDYYDFAAQMKRNESIHVPKFLHKFETLSKATLVMLLIGVATGALGLQIL 186 (244)
Q Consensus 133 ~~~we~~~~~~~~~~~~~~~~~p~~~~~~~~~s~~~~v~~~~~~~~~g~~~~~~ 186 (244)
.+|++.|-+.......+.. .| .+..+.|.++.++++++++++++-+.
T Consensus 17 DdDF~nFI~vVksVLtdk~--~~-----~~~~~~~~~~ii~i~~v~~~~~~~fl 63 (69)
T PHA02975 17 DSDFEDFIDTIMHVLTGKK--EP-----KKKSSLSIILIIFIIFITCIAVFTFL 63 (69)
T ss_pred hHHHHHHHHHHHHHHcCCC--CC-----CcCCchHHHHHHHHHHHHHHHHHHHH
Confidence 4567777776655333322 11 12444454444444444444444333
No 152
>PRK10920 putative uroporphyrinogen III C-methyltransferase; Provisional
Probab=26.30 E-value=4.7e+02 Score=24.51 Aligned_cols=22 Identities=9% Similarity=0.149 Sum_probs=13.2
Q ss_pred hhhhHHHHHHHHHHHHhhCCCC
Q psy5201 219 KYDLQENIDRFAKRYQESYPYR 240 (244)
Q Consensus 219 ~~~~~~q~e~~~~~~~~~~~~~ 240 (244)
......++..+.+++++--..|
T Consensus 108 ~~~l~~q~~~Lq~~~~~ls~~~ 129 (390)
T PRK10920 108 QAALAKQLDELQQKVATISGSD 129 (390)
T ss_pred HHHHHHHHHHHHHHHHHHhCCC
Confidence 3345556777777777654444
No 153
>PF01277 Oleosin: Oleosin; InterPro: IPR000136 Oleosins [] are the proteinaceous components of plants' lipid storage bodies called oil bodies. Oil bodies are small droplets (0.2 to 1.5 mu-m in diameter) containing mostly triacylglycerol that are surrounded by a phospholipid/ oleosin annulus. Oleosins may have a structural role in stabilising the lipid body during dessication of the seed, by preventing coalescence of the oil. They may also provide recognition signals for specific lipase anchorage in lipolysis during seedling growth. Oleosins are found in the monolayer lipid/ water interface of oil bodies and probably interact with both the lipid and phospholipid moieties. Oleosins are proteins of 16 Kd to 24 Kd and are composed of three domains: an N-terminal hydrophilic region of variable length (from 30 to 60 residues); a central hydrophobic domain of about 70 residues and a C-terminal amphipathic region of variable length (from 60 to 100 residues). The central hydrophobic domain is proposed to be made up of beta-strand structure and to interact with the lipids []. It is the only domain whose sequence is conserved.; GO: 0012511 monolayer-surrounded lipid storage body, 0016021 integral to membrane
Probab=26.06 E-value=2.7e+02 Score=21.55 Aligned_cols=26 Identities=12% Similarity=0.128 Sum_probs=20.0
Q ss_pred hhhhchhhHHHHHHHHHHHHHHhhhh
Q psy5201 196 RNVVNSREMEISQNLMNARNDAKKYD 221 (244)
Q Consensus 196 ~~~~d~~~~~~~~~~~~~r~~ar~~~ 221 (244)
-+++|...+++.+.-....+++|+.|
T Consensus 90 ~~q~d~Ak~ri~d~a~~v~~kake~g 115 (118)
T PF01277_consen 90 PDQLDYAKRRIADTASYVGQKAKEVG 115 (118)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHhC
Confidence 46778888888888888888777765
No 154
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.44 E-value=2.5e+02 Score=19.77 Aligned_cols=28 Identities=11% Similarity=-0.014 Sum_probs=14.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy5201 165 SKATLVMLLIGVATGALGLQILAVQYSK 192 (244)
Q Consensus 165 s~~~~v~~~~~~~~~g~~~~~~~~~~~~ 192 (244)
+.|..++++.+..++|++.+++..++.-
T Consensus 2 ~l~lail~ivl~ll~G~~~G~fiark~~ 29 (71)
T COG3763 2 SLWLAILLIVLALLAGLIGGFFIARKQM 29 (71)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555555555556665655544433
No 155
>PF14002 YniB: YniB-like protein
Probab=25.41 E-value=2e+02 Score=23.64 Aligned_cols=25 Identities=16% Similarity=0.036 Sum_probs=11.1
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHH
Q psy5201 163 TLSKATLVMLLIGVATGALGLQILAV 188 (244)
Q Consensus 163 ~~s~~~~v~~~~~~~~~g~~~~~~~~ 188 (244)
..+|+.|. ++..++++|+.++..+.
T Consensus 71 ~~~ni~F~-vIy~liFvGlAL~aSG~ 95 (166)
T PF14002_consen 71 SGSNIMFW-VIYLLIFVGLALQASGA 95 (166)
T ss_pred ccccHHHH-HHHHHHHHHHHHHHhhh
Confidence 34455333 33334445555555443
No 156
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=25.05 E-value=1.7e+02 Score=22.66 Aligned_cols=8 Identities=25% Similarity=0.820 Sum_probs=3.4
Q ss_pred HHHHHHHH
Q psy5201 169 LVMLLIGV 176 (244)
Q Consensus 169 ~v~~~~~~ 176 (244)
++++++++
T Consensus 3 ~i~lvvG~ 10 (128)
T PF06295_consen 3 IIGLVVGL 10 (128)
T ss_pred HHHHHHHH
Confidence 34444444
No 157
>PF11446 DUF2897: Protein of unknown function (DUF2897); InterPro: IPR021550 This is a bacterial family of uncharacterised proteins.
Probab=24.95 E-value=1.5e+02 Score=19.66 Aligned_cols=19 Identities=11% Similarity=0.130 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy5201 169 LVMLLIGVATGALGLQILA 187 (244)
Q Consensus 169 ~v~~~~~~~~~g~~~~~~~ 187 (244)
|+.++++++++.+.+..+.
T Consensus 6 wlIIviVlgvIigNia~LK 24 (55)
T PF11446_consen 6 WLIIVIVLGVIIGNIAALK 24 (55)
T ss_pred hHHHHHHHHHHHhHHHHHH
Confidence 3444444444444433333
No 158
>COG0089 RplW Ribosomal protein L23 [Translation, ribosomal structure and biogenesis]
Probab=24.48 E-value=64 Score=23.98 Aligned_cols=21 Identities=19% Similarity=0.347 Sum_probs=18.4
Q ss_pred ccccCCCCCHHHHHHHHHHHH
Q psy5201 45 ILELERNCSPKEIRSAFIRLS 65 (244)
Q Consensus 45 iLgv~~~a~~~eIk~ay~~l~ 65 (244)
+|-|+++|+..+||+|..++-
T Consensus 25 vF~V~~~AtK~~IK~AvE~lF 45 (94)
T COG0089 25 VFIVDPDATKPEIKAAVEELF 45 (94)
T ss_pred EEEECCCCCHHHHHHHHHHHh
Confidence 678999999999999998764
No 159
>PF15141 DUF4574: Domain of unknown function (DUF4574)
Probab=23.56 E-value=75 Score=23.12 Aligned_cols=26 Identities=8% Similarity=0.151 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhchh
Q psy5201 169 LVMLLIGVATGALGLQILAVQYSKTF 194 (244)
Q Consensus 169 ~v~~~~~~~~~g~~~~~~~~~~~~~~ 194 (244)
++..+.+++++|++...+.+....+.
T Consensus 7 ~~~~~~llG~GGvG~~L~~LvtPgee 32 (84)
T PF15141_consen 7 ALSVVALLGFGGVGYALFVLVTPGEE 32 (84)
T ss_pred HHHHHHHHHccchhheeeeEeCCcHH
Confidence 33444444444666666655544444
No 160
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=23.36 E-value=2.6e+02 Score=19.27 Aligned_cols=14 Identities=0% Similarity=-0.147 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHhhh
Q psy5201 178 TGALGLQILAVQYS 191 (244)
Q Consensus 178 ~~g~~~~~~~~~~~ 191 (244)
++|++..++..++.
T Consensus 8 i~G~~~Gff~ar~~ 21 (64)
T PF03672_consen 8 IVGAVIGFFIARKY 21 (64)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444333
No 161
>PF02216 B: B domain; InterPro: IPR003132 This entry represents the immunoglobulin-binding domain found in the Staphylococcus aureus virulence factor protein A (SpA). Protein A contains five highly homologous Ig-binding domains in tandem (designated domains E, D, A, B and C), which share a common structure consisting of three helices in a closed left-handed twist. Protein A can exist in both secreted and membrane-bound forms, and has two distinct Ig-binding activities: each domain can bind Fc-gamma (the constant region of IgG involved in effector functions) and Fab (the Ig fragment responsible for antigen recognition) [].; GO: 0019865 immunoglobulin binding, 0009405 pathogenesis; PDB: 1EDL_A 1EDI_A 1EDJ_A 1EDK_A 2B88_A 2B87_A 2B89_A 1FC2_C 1DEE_H 1ZXG_A ....
Probab=23.24 E-value=58 Score=21.55 Aligned_cols=32 Identities=25% Similarity=0.522 Sum_probs=20.7
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHhhCCCCC
Q psy5201 39 DHTHYEILELERNCSPKEIRSAFIRLSKQFHPDKN 73 (244)
Q Consensus 39 ~~~~Y~iLgv~~~a~~~eIk~ay~~l~~~~HPD~~ 73 (244)
...||+||+++.- .+|=|-.|.+ .++-||+..
T Consensus 10 QnAFY~vl~~~nL--teeQrn~yI~-~lKddPs~s 41 (54)
T PF02216_consen 10 QNAFYEVLHMPNL--TEEQRNGYIQ-SLKDDPSRS 41 (54)
T ss_dssp HHHHHHHHCSTTS---HHHHHHHHH-HHHH-GCCH
T ss_pred HHHHHHHHcCCCc--CHHHHHhHHH-HHhhChHHH
Confidence 3469999999865 2334777766 556788754
No 162
>COG2165 PulG Type II secretory pathway, pseudopilin PulG [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=23.08 E-value=2.9e+02 Score=20.60 Aligned_cols=26 Identities=19% Similarity=0.100 Sum_probs=14.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhh
Q psy5201 166 KATLVMLLIGVATGALGLQILAVQYS 191 (244)
Q Consensus 166 ~~~~v~~~~~~~~~g~~~~~~~~~~~ 191 (244)
-++++=++++++++|+.......+..
T Consensus 9 GFTLiElLVvl~Iigil~~~~~p~~~ 34 (149)
T COG2165 9 GFTLIELLVVLAIIGILAALALPSLQ 34 (149)
T ss_pred CcchHHHHHHHHHHHHHHHHHHhhhh
Confidence 34555666666666655555554433
No 163
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=23.08 E-value=5.8e+02 Score=24.20 Aligned_cols=7 Identities=14% Similarity=0.116 Sum_probs=2.5
Q ss_pred HHHHHHH
Q psy5201 170 VMLLIGV 176 (244)
Q Consensus 170 v~~~~~~ 176 (244)
+.+++++
T Consensus 9 InFlIl~ 15 (445)
T PRK13428 9 IGFAVIV 15 (445)
T ss_pred HHHHHHH
Confidence 3333333
No 164
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=22.74 E-value=2.9e+02 Score=19.58 Aligned_cols=9 Identities=33% Similarity=0.615 Sum_probs=3.7
Q ss_pred HHHHHHHHH
Q psy5201 225 NIDRFAKRY 233 (244)
Q Consensus 225 q~e~~~~~~ 233 (244)
+.+++++|+
T Consensus 50 ~a~rm~eRI 58 (75)
T TIGR02976 50 KADRLEERI 58 (75)
T ss_pred HHHHHHHHH
Confidence 344444443
No 165
>PF06212 GRIM-19: GRIM-19 protein; InterPro: IPR009346 This family consists of several eukaryotic gene associated with retinoic-interferon-induced mortality 19 (GRIM-19) proteins. GRIM-19, was reported to encode a small protein primarily distributed in the nucleus and was able to promote cell death induced by IFN-beta and RA. A bovine homologue of GRIM-19 was co-purified with mitochondrial NADH:ubiquinone oxidoreductase (complex I) in bovine heart. Therefore, its exact cellular localisation and function are unclear. It has now been discovered that GRIM-19 is a specific interacting protein which negatively regulates Stat3 activity [].
Probab=21.58 E-value=4e+02 Score=20.89 Aligned_cols=31 Identities=10% Similarity=-0.179 Sum_probs=18.0
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHhhhch
Q psy5201 163 TLSKATLVMLLIGVATGALGLQILAVQYSKT 193 (244)
Q Consensus 163 ~~s~~~~v~~~~~~~~~g~~~~~~~~~~~~~ 193 (244)
-.+-+.++.++++++++|........+...+
T Consensus 28 g~sg~~~~~~~~~~~~~G~y~~~~~~r~~r~ 58 (130)
T PF06212_consen 28 GPSGWTMFAGGAGIMAYGFYKVGQGNRERRE 58 (130)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666666666666666655555444333
No 166
>PF12220 U1snRNP70_N: U1 small nuclear ribonucleoprotein of 70kDa MW N terminal; InterPro: IPR022023 This domain is found in eukaryotes. This domain is about 90 amino acids in length. This domain is found associated with PF00076 from PFAM. This domain is part of U1 snRNP, which is the pre-mRNA binding protein of the penta-snRNP spliceosome complex. It extends over a distance of 180 A from its RNA binding domain, wraps around the core domain of U1 snRNP consisting of the seven Sm proteins and finally contacts U1-C, which is crucial for 5'-splice-site recognition.
Probab=21.37 E-value=71 Score=23.43 Aligned_cols=36 Identities=17% Similarity=0.293 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCCCCCC
Q psy5201 207 SQNLMNARNDAKKYDLQENIDRFAKRYQESYPYRRP 242 (244)
Q Consensus 207 ~~~~~~~r~~ar~~~~~~q~e~~~~~~~~~~~~~~~ 242 (244)
.+...+.+.+.+++..++..+.+++.+++-++.=||
T Consensus 59 ~et~~e~~~r~~~ek~~~~~~~l~~~l~~w~P~~DP 94 (94)
T PF12220_consen 59 TETKEERRERKRKEKKEKNEEKLEEELKEWDPHEDP 94 (94)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 445556666667777777777888888887776655
No 167
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=21.34 E-value=2.5e+02 Score=18.31 Aligned_cols=36 Identities=11% Similarity=0.057 Sum_probs=23.8
Q ss_pred HHHHhhhchhchhhhchhhHHHHHHHHHHHHHHhhhhh
Q psy5201 185 ILAVQYSKTFPRNVVNSREMEISQNLMNARNDAKKYDL 222 (244)
Q Consensus 185 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~r~~ar~~~~ 222 (244)
..+.+...... .+++.|+++......+..+.++.|+
T Consensus 18 ~~A~~~~~~lL--~~eP~N~Qa~~L~~~i~~~i~kdgl 53 (53)
T PF14853_consen 18 EKARRYCDALL--EIEPDNRQAQSLKELIEDKIQKDGL 53 (53)
T ss_dssp HHHHHHHHHHH--HHTTS-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHH--hhCCCcHHHHHHHHHHHHHHhccCC
Confidence 33333444444 7788899999998888888777663
No 168
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.24 E-value=4.1e+02 Score=21.00 Aligned_cols=18 Identities=6% Similarity=0.191 Sum_probs=8.1
Q ss_pred hhhchhhHHHHHHHHHHH
Q psy5201 197 NVVNSREMEISQNLMNAR 214 (244)
Q Consensus 197 ~~~d~~~~~~~~~~~~~r 214 (244)
..+|+..++++.++++.-
T Consensus 48 ~~ld~~rqel~~HFa~sA 65 (138)
T COG3105 48 AQLDEYRQELVKHFARSA 65 (138)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444433
No 169
>PF10661 EssA: WXG100 protein secretion system (Wss), protein EssA; InterPro: IPR018920 The Wss (WXG100 protein secretion system) in Staphylococcus aureus seems to be encoded by a locus of eight ORFs, called ess (eSAT-6 secretion system) []. This locus encodes, amongst several other proteins, EssA, a protein predicted to possess one transmembrane domain. Due to its predicted membrane location and its absolute requirement for WXG100 protein secretion, it has been speculated that EssA could form a secretion apparatus in conjunction with YukC and YukAB. Proteins homologous to EssA, YukC, EsaA and YukD were absent from mycobacteria []. Members of this family are associated with type VII secretion of WXG100 family targets in the Firmicutes, but not in the Actinobacteria. This highly divergent protein family consists largely of a central region of highly polar low-complexity sequence containing occasional LF motifs in weak repeats about 17 residues in length, flanked by hydrophobic N- and C-terminal regions.
Probab=21.20 E-value=1.6e+02 Score=23.63 Aligned_cols=29 Identities=10% Similarity=0.112 Sum_probs=16.3
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHhhh
Q psy5201 163 TLSKATLVMLLIGVATGALGLQILAVQYS 191 (244)
Q Consensus 163 ~~s~~~~v~~~~~~~~~g~~~~~~~~~~~ 191 (244)
.+..+.+++.+++++++.++..|..+++.
T Consensus 115 ~~~~~~i~~~i~g~ll~i~~giy~~~r~~ 143 (145)
T PF10661_consen 115 KPISPTILLSIGGILLAICGGIYVVLRKV 143 (145)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445555556556566566666666553
No 170
>COG1377 FlhB Flagellar biosynthesis pathway, component FlhB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=21.02 E-value=3.6e+02 Score=25.06 Aligned_cols=41 Identities=10% Similarity=0.145 Sum_probs=21.5
Q ss_pred hhchhhHHHHHHHHHHHHHHhhhhhHH--HHHHHHHHHHhhCC
Q psy5201 198 VVNSREMEISQNLMNARNDAKKYDLQE--NIDRFAKRYQESYP 238 (244)
Q Consensus 198 ~~d~~~~~~~~~~~~~r~~ar~~~~~~--q~e~~~~~~~~~~~ 238 (244)
.|.-...++.+.+++....=.-.+..+ |+++.++|+...-|
T Consensus 219 ~lkMtKqEVKdE~K~sEGdPeVKsr~Rq~~re~a~~rm~~~Vp 261 (363)
T COG1377 219 KLKMTKQEVKDEYKQSEGDPEVKSRIRQMQREIARRRMMSDVP 261 (363)
T ss_pred HccCcHHHHHHHHhhccCChhhhHHHHHHHHHHHHHHHHhhCC
Confidence 334444556666666555444444444 45556677655443
No 171
>PHA02650 hypothetical protein; Provisional
Probab=20.76 E-value=3.3e+02 Score=19.57 Aligned_cols=17 Identities=6% Similarity=0.421 Sum_probs=10.0
Q ss_pred CCchHHHHHHHHhcccc
Q psy5201 133 PENWKDYYDFAAQMKRN 149 (244)
Q Consensus 133 ~~~we~~~~~~~~~~~~ 149 (244)
.+|++.|-+.......+
T Consensus 17 DdDFnnFI~VVkSVLtD 33 (81)
T PHA02650 17 DDDFNNFIDVVKSVLSD 33 (81)
T ss_pred HHHHHHHHHHHHHHHcC
Confidence 45677777766654333
No 172
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=20.71 E-value=4.5e+02 Score=21.09 Aligned_cols=7 Identities=14% Similarity=0.287 Sum_probs=2.5
Q ss_pred chhhHHH
Q psy5201 200 NSREMEI 206 (244)
Q Consensus 200 d~~~~~~ 206 (244)
+++...+
T Consensus 40 e~R~~~I 46 (167)
T PRK14475 40 DAYAAKI 46 (167)
T ss_pred HHHHHHH
Confidence 3333333
Done!