RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy5201
(244 letters)
>gnl|CDD|215804 pfam00226, DnaJ, DnaJ domain. DnaJ domains (J-domains) are
associated with hsp70 heat-shock system and it is
thought that this domain mediates the interaction.
DnaJ-domain is therefore part of a chaperone (protein
folding) system. The T-antigens, although not in Prosite
are confirmed as DnaJ containing domains from
literature.
Length = 63
Score = 93.0 bits (232), Expect = 7e-25
Identities = 29/63 (46%), Positives = 47/63 (74%)
Query: 41 THYEILELERNCSPKEIRSAFIRLSKQFHPDKNPSNPALHDKFVKLNEAYSILNDMDRRR 100
+YEIL + R+ S +EI+ A+ +L+ ++HPDKNP +PA +KF ++NEAY +L+D ++R
Sbjct: 1 DYYEILGVPRDASDEEIKKAYRKLALKYHPDKNPGDPAAEEKFKEINEAYEVLSDPEKRA 60
Query: 101 NYD 103
YD
Sbjct: 61 IYD 63
>gnl|CDD|223560 COG0484, DnaJ, DnaJ-class molecular chaperone with C-terminal Zn
finger domain [Posttranslational modification, protein
turnover, chaperones].
Length = 371
Score = 89.2 bits (222), Expect = 9e-21
Identities = 26/61 (42%), Positives = 45/61 (73%)
Query: 43 YEILELERNCSPKEIRSAFIRLSKQFHPDKNPSNPALHDKFVKLNEAYSILNDMDRRRNY 102
YEIL + ++ S +EI+ A+ +L+K++HPD+NP + +KF ++NEAY +L+D ++R Y
Sbjct: 7 YEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKRAAY 66
Query: 103 D 103
D
Sbjct: 67 D 67
>gnl|CDD|99751 cd06257, DnaJ, DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock
protein 40) proteins are highly conserved and play
crucial roles in protein translation, folding,
unfolding, translocation, and degradation. They act
primarily by stimulating the ATPase activity of Hsp70s,
an important chaperonine family. Hsp40 proteins are
characterized by the presence of a J domain, which
mediates the interaction with Hsp70. They may contain
other domains as well, and the architectures provide a
means of classification.
Length = 55
Score = 79.5 bits (197), Expect = 9e-20
Identities = 23/55 (41%), Positives = 40/55 (72%)
Query: 41 THYEILELERNCSPKEIRSAFIRLSKQFHPDKNPSNPALHDKFVKLNEAYSILND 95
+Y+IL + + S +EI+ A+ +L+ ++HPDKNP +P +KF ++NEAY +L+D
Sbjct: 1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD 55
>gnl|CDD|236757 PRK10767, PRK10767, chaperone protein DnaJ; Provisional.
Length = 371
Score = 84.8 bits (211), Expect = 4e-19
Identities = 25/61 (40%), Positives = 41/61 (67%)
Query: 43 YEILELERNCSPKEIRSAFIRLSKQFHPDKNPSNPALHDKFVKLNEAYSILNDMDRRRNY 102
YE+L + RN S EI+ A+ +L+ ++HPD+NP + +KF ++ EAY +L+D +R Y
Sbjct: 7 YEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKRAAY 66
Query: 103 D 103
D
Sbjct: 67 D 67
>gnl|CDD|233829 TIGR02349, DnaJ_bact, chaperone protein DnaJ. This model
represents bacterial forms of DnaJ, part of the
DnaK-DnaJ-GrpE chaperone system. The three components
typically are encoded by consecutive genes. DnaJ
homologs occur in many genomes, typically not near DnaK
and GrpE-like genes; most such genes are not included by
this family. Eukaryotic (mitochondrial and chloroplast)
forms are not included in the scope of this family.
Length = 354
Score = 83.4 bits (207), Expect = 9e-19
Identities = 25/61 (40%), Positives = 44/61 (72%), Gaps = 1/61 (1%)
Query: 43 YEILELERNCSPKEIRSAFIRLSKQFHPDKNPSNPALHDKFVKLNEAYSILNDMDRRRNY 102
YEIL + ++ S +EI+ A+ +L+K++HPD+N + +KF ++NEAY +L+D ++R Y
Sbjct: 3 YEILGVSKDASEEEIKKAYRKLAKKYHPDRNK-DKEAEEKFKEINEAYEVLSDPEKRAQY 61
Query: 103 D 103
D
Sbjct: 62 D 62
>gnl|CDD|197617 smart00271, DnaJ, DnaJ molecular chaperone homology domain.
Length = 60
Score = 74.6 bits (184), Expect = 7e-18
Identities = 24/59 (40%), Positives = 41/59 (69%), Gaps = 1/59 (1%)
Query: 41 THYEILELERNCSPKEIRSAFIRLSKQFHPDKNPSNPAL-HDKFVKLNEAYSILNDMDR 98
+YEIL + R+ S EI+ A+ +L+ ++HPDKNP + +KF ++NEAY +L+D ++
Sbjct: 2 DYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPEK 60
>gnl|CDD|184599 PRK14277, PRK14277, chaperone protein DnaJ; Provisional.
Length = 386
Score = 78.7 bits (194), Expect = 5e-17
Identities = 29/62 (46%), Positives = 44/62 (70%)
Query: 42 HYEILELERNCSPKEIRSAFIRLSKQFHPDKNPSNPALHDKFVKLNEAYSILNDMDRRRN 101
+YEIL ++RN + +EI+ A+ RL+K++HPD NP + KF ++NEAY IL+D +R
Sbjct: 7 YYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRAQ 66
Query: 102 YD 103
YD
Sbjct: 67 YD 68
>gnl|CDD|237657 PRK14281, PRK14281, chaperone protein DnaJ; Provisional.
Length = 397
Score = 73.7 bits (181), Expect = 3e-15
Identities = 26/62 (41%), Positives = 43/62 (69%)
Query: 42 HYEILELERNCSPKEIRSAFIRLSKQFHPDKNPSNPALHDKFVKLNEAYSILNDMDRRRN 101
+YE+L + R+ EI+ A+ +L+ ++HPDKNP N + F ++NEAY +L++ D+RR
Sbjct: 5 YYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKRRR 64
Query: 102 YD 103
YD
Sbjct: 65 YD 66
>gnl|CDD|237668 PRK14301, PRK14301, chaperone protein DnaJ; Provisional.
Length = 373
Score = 72.1 bits (177), Expect = 1e-14
Identities = 27/62 (43%), Positives = 41/62 (66%)
Query: 42 HYEILELERNCSPKEIRSAFIRLSKQFHPDKNPSNPALHDKFVKLNEAYSILNDMDRRRN 101
+YE+L + R+ S EI+ A+ +L+ Q+HPD+NP NP KF + EAY +L D ++R
Sbjct: 6 YYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKRAR 65
Query: 102 YD 103
YD
Sbjct: 66 YD 67
>gnl|CDD|237661 PRK14291, PRK14291, chaperone protein DnaJ; Provisional.
Length = 382
Score = 72.1 bits (177), Expect = 1e-14
Identities = 28/62 (45%), Positives = 46/62 (74%), Gaps = 1/62 (1%)
Query: 42 HYEILELERNCSPKEIRSAFIRLSKQFHPDKNPSNPALHDKFVKLNEAYSILNDMDRRRN 101
+YEIL + RN + +EI+ A+ RL++++HPD N NP +KF ++NEAY +L+D ++R+
Sbjct: 5 YYEILGVSRNATQEEIKKAYRRLARKYHPDFNK-NPEAEEKFKEINEAYQVLSDPEKRKL 63
Query: 102 YD 103
YD
Sbjct: 64 YD 65
>gnl|CDD|184611 PRK14297, PRK14297, chaperone protein DnaJ; Provisional.
Length = 380
Score = 71.4 bits (175), Expect = 2e-14
Identities = 27/62 (43%), Positives = 42/62 (67%)
Query: 42 HYEILELERNCSPKEIRSAFIRLSKQFHPDKNPSNPALHDKFVKLNEAYSILNDMDRRRN 101
+YE+L LE+ S EI+ AF +L+ ++HPDKN N +KF ++NEAY +L+D ++
Sbjct: 6 YYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKKAQ 65
Query: 102 YD 103
YD
Sbjct: 66 YD 67
>gnl|CDD|237667 PRK14299, PRK14299, chaperone protein DnaJ; Provisional.
Length = 291
Score = 69.6 bits (170), Expect = 6e-14
Identities = 28/62 (45%), Positives = 45/62 (72%), Gaps = 1/62 (1%)
Query: 42 HYEILELERNCSPKEIRSAFIRLSKQFHPDKNPSNPALHDKFVKLNEAYSILNDMDRRRN 101
+Y IL + +N S EI+ AF +L++++HPD N S P +KF ++NEAY++L+D ++RR
Sbjct: 6 YYAILGVPKNASQDEIKKAFKKLARKYHPDVNKS-PGAEEKFKEINEAYTVLSDPEKRRI 64
Query: 102 YD 103
YD
Sbjct: 65 YD 66
>gnl|CDD|237662 PRK14292, PRK14292, chaperone protein DnaJ; Provisional.
Length = 371
Score = 69.5 bits (170), Expect = 9e-14
Identities = 25/62 (40%), Positives = 44/62 (70%), Gaps = 1/62 (1%)
Query: 42 HYEILELERNCSPKEIRSAFIRLSKQFHPDKNPSNPALHDKFVKLNEAYSILNDMDRRRN 101
+YE+L + R S EI+SA+ +L+ ++HPD+N +KF ++NEAY++L+D ++R +
Sbjct: 4 YYELLGVSRTASADEIKSAYRKLALKYHPDRNK-EKGAAEKFAQINEAYAVLSDAEKRAH 62
Query: 102 YD 103
YD
Sbjct: 63 YD 64
>gnl|CDD|237658 PRK14284, PRK14284, chaperone protein DnaJ; Provisional.
Length = 391
Score = 69.1 bits (169), Expect = 1e-13
Identities = 24/62 (38%), Positives = 43/62 (69%)
Query: 42 HYEILELERNCSPKEIRSAFIRLSKQFHPDKNPSNPALHDKFVKLNEAYSILNDMDRRRN 101
+Y IL + + SP+EI+ A+ +L+ ++HPDKNP + +F +++EAY +L+D +R +
Sbjct: 3 YYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRES 62
Query: 102 YD 103
YD
Sbjct: 63 YD 64
>gnl|CDD|237665 PRK14295, PRK14295, chaperone protein DnaJ; Provisional.
Length = 389
Score = 68.3 bits (167), Expect = 2e-13
Identities = 25/92 (27%), Positives = 51/92 (55%), Gaps = 17/92 (18%)
Query: 42 HYEILELERNCSPKEIRSAFIRLSKQFHPDKNPSNPALHDKFVKLNEAYSILNDMDRRRN 101
+Y++L + ++ + EI+ A+ +L++++HPD N + ++F +++EAY +L+D +R+
Sbjct: 11 YYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKRKE 70
Query: 102 YDASLNLQTVRQNMFVHKTRARSSYSDSGERP 133
YD ARS + + G RP
Sbjct: 71 YD-----------------EARSLFGNGGFRP 85
>gnl|CDD|237666 PRK14296, PRK14296, chaperone protein DnaJ; Provisional.
Length = 372
Score = 67.7 bits (165), Expect = 3e-13
Identities = 30/62 (48%), Positives = 44/62 (70%), Gaps = 1/62 (1%)
Query: 42 HYEILELERNCSPKEIRSAFIRLSKQFHPDKNPSNPALHDKFVKLNEAYSILNDMDRRRN 101
+YE+L + + S +EIR A+ +L+KQ+HPD N S P HDK V++NEA +L D D+R+
Sbjct: 6 YYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKS-PDAHDKMVEINEAADVLLDKDKRKQ 64
Query: 102 YD 103
YD
Sbjct: 65 YD 66
>gnl|CDD|237660 PRK14289, PRK14289, chaperone protein DnaJ; Provisional.
Length = 386
Score = 66.4 bits (162), Expect = 9e-13
Identities = 24/62 (38%), Positives = 40/62 (64%)
Query: 42 HYEILELERNCSPKEIRSAFIRLSKQFHPDKNPSNPALHDKFVKLNEAYSILNDMDRRRN 101
+YE+L + + + EI+ A+ + + Q+HPDKNP + +KF + EAY +L+D D+R
Sbjct: 7 YYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDKRSR 66
Query: 102 YD 103
YD
Sbjct: 67 YD 68
>gnl|CDD|237655 PRK14279, PRK14279, chaperone protein DnaJ; Provisional.
Length = 392
Score = 66.3 bits (162), Expect = 1e-12
Identities = 22/65 (33%), Positives = 43/65 (66%)
Query: 39 DHTHYEILELERNCSPKEIRSAFIRLSKQFHPDKNPSNPALHDKFVKLNEAYSILNDMDR 98
+ Y+ L + + S +EI+ A+ +L+++ HPD NP +PA ++F ++EA+ +L+D +
Sbjct: 8 EKDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAK 67
Query: 99 RRNYD 103
R+ YD
Sbjct: 68 RKEYD 72
>gnl|CDD|225124 COG2214, CbpA, DnaJ-class molecular chaperone [Posttranslational
modification, protein turnover, chaperones].
Length = 237
Score = 64.1 bits (155), Expect = 2e-12
Identities = 29/63 (46%), Positives = 46/63 (73%), Gaps = 1/63 (1%)
Query: 42 HYEILELERNCSPKEIRSAFIRLSKQFHPDKNPSNPALH-DKFVKLNEAYSILNDMDRRR 100
+YEIL + N S +EI+ A+ +L+ ++HPD+NP +P + +KF ++NEAY IL+D +RR
Sbjct: 8 YYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPERRA 67
Query: 101 NYD 103
YD
Sbjct: 68 EYD 70
>gnl|CDD|237664 PRK14294, PRK14294, chaperone protein DnaJ; Provisional.
Length = 366
Score = 64.8 bits (158), Expect = 3e-12
Identities = 23/62 (37%), Positives = 41/62 (66%)
Query: 42 HYEILELERNCSPKEIRSAFIRLSKQFHPDKNPSNPALHDKFVKLNEAYSILNDMDRRRN 101
+YEIL + R+ S +EI+ ++ +L+ ++HPD+NP + + F + EAY +L+D +R
Sbjct: 6 YYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRGI 65
Query: 102 YD 103
YD
Sbjct: 66 YD 67
>gnl|CDD|172778 PRK14290, PRK14290, chaperone protein DnaJ; Provisional.
Length = 365
Score = 64.6 bits (157), Expect = 5e-12
Identities = 28/63 (44%), Positives = 46/63 (73%), Gaps = 1/63 (1%)
Query: 42 HYEILELERNCSPKEIRSAFIRLSKQFHPDKNPSNPA-LHDKFVKLNEAYSILNDMDRRR 100
+Y+IL ++RN S ++I+ AF L+K++HPD +P N A +KF +++EAY +L+D +RR
Sbjct: 5 YYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRR 64
Query: 101 NYD 103
YD
Sbjct: 65 QYD 67
>gnl|CDD|237654 PRK14278, PRK14278, chaperone protein DnaJ; Provisional.
Length = 378
Score = 64.3 bits (157), Expect = 5e-12
Identities = 23/62 (37%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Query: 42 HYEILELERNCSPKEIRSAFIRLSKQFHPDKNPSNPALHDKFVKLNEAYSILNDMDRRRN 101
+Y +L + RN S EI+ A+ +L+++ HPD NP +KF +++ AY +L+D ++RR
Sbjct: 5 YYGLLGVSRNASDAEIKRAYRKLARELHPDVNPD-EEAQEKFKEISVAYEVLSDPEKRRI 63
Query: 102 YD 103
D
Sbjct: 64 VD 65
>gnl|CDD|237653 PRK14276, PRK14276, chaperone protein DnaJ; Provisional.
Length = 380
Score = 64.3 bits (157), Expect = 5e-12
Identities = 23/61 (37%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 43 YEILELERNCSPKEIRSAFIRLSKQFHPDKNPSNPALHDKFVKLNEAYSILNDMDRRRNY 102
Y+ L + ++ S EI+ A+ +LSK++HPD N P +K+ ++ EAY L+D +R Y
Sbjct: 7 YDRLGVSKDASQDEIKKAYRKLSKKYHPDIN-KEPGAEEKYKEVQEAYETLSDPQKRAAY 65
Query: 103 D 103
D
Sbjct: 66 D 66
>gnl|CDD|184603 PRK14282, PRK14282, chaperone protein DnaJ; Provisional.
Length = 369
Score = 64.4 bits (157), Expect = 5e-12
Identities = 27/63 (42%), Positives = 42/63 (66%), Gaps = 1/63 (1%)
Query: 42 HYEILELERNCSPKEIRSAFIRLSKQFHPDKNPSNPAL-HDKFVKLNEAYSILNDMDRRR 100
+YEIL + RN + +EI+ A+ RL K++HPD++P N KF ++ EAY +L+D +R
Sbjct: 6 YYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRA 65
Query: 101 NYD 103
YD
Sbjct: 66 MYD 68
>gnl|CDD|237656 PRK14280, PRK14280, chaperone protein DnaJ; Provisional.
Length = 376
Score = 63.6 bits (155), Expect = 9e-12
Identities = 25/62 (40%), Positives = 42/62 (67%), Gaps = 1/62 (1%)
Query: 42 HYEILELERNCSPKEIRSAFIRLSKQFHPDKNPSNPALHDKFVKLNEAYSILNDMDRRRN 101
+YE+L + ++ S EI+ A+ +LSK++HPD N A +KF +++EAY +L+D +R
Sbjct: 6 YYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEEGA-DEKFKEISEAYEVLSDDQKRAQ 64
Query: 102 YD 103
YD
Sbjct: 65 YD 66
>gnl|CDD|184612 PRK14298, PRK14298, chaperone protein DnaJ; Provisional.
Length = 377
Score = 63.3 bits (154), Expect = 9e-12
Identities = 25/62 (40%), Positives = 45/62 (72%), Gaps = 1/62 (1%)
Query: 42 HYEILELERNCSPKEIRSAFIRLSKQFHPDKNPSNPALHDKFVKLNEAYSILNDMDRRRN 101
+YEIL L ++ S ++I+ A+ +L+ ++HPDKN P +KF +++EAY++L+D ++R
Sbjct: 7 YYEILGLSKDASVEDIKKAYRKLAMKYHPDKN-KEPDAEEKFKEISEAYAVLSDAEKRAQ 65
Query: 102 YD 103
YD
Sbjct: 66 YD 67
>gnl|CDD|237663 PRK14293, PRK14293, chaperone protein DnaJ; Provisional.
Length = 374
Score = 63.5 bits (155), Expect = 1e-11
Identities = 24/61 (39%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Query: 43 YEILELERNCSPKEIRSAFIRLSKQFHPDKNPSNPALHDKFVKLNEAYSILNDMDRRRNY 102
YEIL + R+ E++ A+ RL++++HPD N P D+F ++N AY +L+D + R Y
Sbjct: 6 YEILGVSRDADKDELKRAYRRLARKYHPDVN-KEPGAEDRFKEINRAYEVLSDPETRARY 64
Query: 103 D 103
D
Sbjct: 65 D 65
>gnl|CDD|172774 PRK14286, PRK14286, chaperone protein DnaJ; Provisional.
Length = 372
Score = 62.7 bits (152), Expect = 2e-11
Identities = 25/65 (38%), Positives = 44/65 (67%)
Query: 39 DHTHYEILELERNCSPKEIRSAFIRLSKQFHPDKNPSNPALHDKFVKLNEAYSILNDMDR 98
+ ++Y+IL + ++ + +EI+SA+ +L+ ++HPDKN N +KF + EAY IL D +
Sbjct: 3 ERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKK 62
Query: 99 RRNYD 103
R+ YD
Sbjct: 63 RQAYD 67
>gnl|CDD|184604 PRK14283, PRK14283, chaperone protein DnaJ; Provisional.
Length = 378
Score = 61.0 bits (148), Expect = 6e-11
Identities = 23/62 (37%), Positives = 45/62 (72%), Gaps = 1/62 (1%)
Query: 42 HYEILELERNCSPKEIRSAFIRLSKQFHPDKNPSNPALHDKFVKLNEAYSILNDMDRRRN 101
+YE+L ++RN KEI+ A+ +L++++HPD + +KF +++EAY++L+D ++R+
Sbjct: 7 YYEVLGVDRNADKKEIKKAYRKLARKYHPDVS-EEEGAEEKFKEISEAYAVLSDDEKRQR 65
Query: 102 YD 103
YD
Sbjct: 66 YD 67
>gnl|CDD|172776 PRK14288, PRK14288, chaperone protein DnaJ; Provisional.
Length = 369
Score = 58.2 bits (140), Expect = 6e-10
Identities = 37/127 (29%), Positives = 72/127 (56%), Gaps = 14/127 (11%)
Query: 41 THYEILELERNCSPKEIRSAFIRLSKQFHPDKNPSNPALHDKFVKLNEAYSILNDMDRRR 100
++YEILE+E++ + + I+ ++ +L+ ++HPD+N + +KF +NEAY +L+D +R
Sbjct: 4 SYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRA 63
Query: 101 NYDASLNLQTVRQNMFVHKTRARSSYSDSGERPEN----WKDYYDFAAQ-MKRNESIHVP 155
YD + ++ + +A +S SD + E+ ++D + F A+ KR +S P
Sbjct: 64 LYD-----RYGKKGL----NQAGASQSDFSDFFEDLGSFFEDAFGFGARGSKRQKSSIAP 114
Query: 156 KFLHKFE 162
+L E
Sbjct: 115 DYLQTIE 121
>gnl|CDD|240236 PTZ00037, PTZ00037, DnaJ_C chaperone protein; Provisional.
Length = 421
Score = 57.1 bits (138), Expect = 2e-09
Identities = 23/61 (37%), Positives = 42/61 (68%), Gaps = 4/61 (6%)
Query: 43 YEILELERNCSPKEIRSAFIRLSKQFHPDKNPSNPALHDKFVKLNEAYSILNDMDRRRNY 102
YE+L L ++C+ EI+ A+ +L+ + HPDK +P +KF +++ AY +L+D ++R+ Y
Sbjct: 31 YEVLNLSKDCTTSEIKKAYRKLAIKHHPDKG-GDP---EKFKEISRAYEVLSDPEKRKIY 86
Query: 103 D 103
D
Sbjct: 87 D 87
>gnl|CDD|237659 PRK14287, PRK14287, chaperone protein DnaJ; Provisional.
Length = 371
Score = 56.2 bits (135), Expect = 2e-09
Identities = 24/62 (38%), Positives = 43/62 (69%), Gaps = 1/62 (1%)
Query: 42 HYEILELERNCSPKEIRSAFIRLSKQFHPDKNPSNPALHDKFVKLNEAYSILNDMDRRRN 101
+YE+L ++RN S E++ A+ +L++++HPD N + P DKF ++ EAY L+D ++ +
Sbjct: 6 YYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKA-PDAEDKFKEVKEAYDTLSDPQKKAH 64
Query: 102 YD 103
YD
Sbjct: 65 YD 66
>gnl|CDD|234368 TIGR03835, termin_org_DnaJ, terminal organelle assembly protein
TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ
homolog and probable assembly protein of the Mycoplasma
terminal organelle. The terminal organelle is involved
in both cytadherence and gliding motility [Cellular
processes, Chemotaxis and motility].
Length = 871
Score = 56.7 bits (136), Expect = 3e-09
Identities = 24/62 (38%), Positives = 42/62 (67%), Gaps = 1/62 (1%)
Query: 42 HYEILELERNCSPKEIRSAFIRLSKQFHPDKNPSNPALHDKFVKLNEAYSILNDMDRRRN 101
+YE+L ++R+ +EI+ AF +L+K++HPD+N P F ++NEA +L++ +R N
Sbjct: 4 YYEVLGIDRDADEQEIKKAFRKLAKKYHPDRN-KAPDAASIFAEINEANDVLSNPKKRAN 62
Query: 102 YD 103
YD
Sbjct: 63 YD 64
>gnl|CDD|172773 PRK14285, PRK14285, chaperone protein DnaJ; Provisional.
Length = 365
Score = 53.5 bits (128), Expect = 2e-08
Identities = 24/62 (38%), Positives = 37/62 (59%)
Query: 42 HYEILELERNCSPKEIRSAFIRLSKQFHPDKNPSNPALHDKFVKLNEAYSILNDMDRRRN 101
+YEIL L + S EI+ A+ +++ ++HPDKN N F + EAY +L D ++R
Sbjct: 5 YYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKRAQ 64
Query: 102 YD 103
YD
Sbjct: 65 YD 66
>gnl|CDD|182347 PRK10266, PRK10266, curved DNA-binding protein CbpA; Provisional.
Length = 306
Score = 51.7 bits (124), Expect = 7e-08
Identities = 24/107 (22%), Positives = 53/107 (49%), Gaps = 13/107 (12%)
Query: 42 HYEILELERNCSPKEIRSAFIRLSKQFHPDKNPSNPALHDKFVKLNEAYSILNDMDRRRN 101
+Y I+ ++ K I++A+ RL++++HPD + P +F ++ EA+ +L+D RR
Sbjct: 6 YYAIMGVKPTDDLKTIKTAYRRLARKYHPDVS-KEPDAEARFKEVAEAWEVLSDEQRRAE 64
Query: 102 YDASLNLQTVRQNMFVHKTRARSS--YSDSGERPENWKDYYDFAAQM 146
YD ++ H+ + + + + N +D+ D + +
Sbjct: 65 YD----------QLWQHRNDPQFNRQFQHGDGQSFNAEDFDDIFSSI 101
>gnl|CDD|172788 PRK14300, PRK14300, chaperone protein DnaJ; Provisional.
Length = 372
Score = 51.9 bits (124), Expect = 8e-08
Identities = 22/62 (35%), Positives = 39/62 (62%), Gaps = 1/62 (1%)
Query: 42 HYEILELERNCSPKEIRSAFIRLSKQFHPDKNPSNPALHDKFVKLNEAYSILNDMDRRRN 101
+Y+IL + + S +++ A+++L+KQ+HPD + A KF ++N AY +L D +R
Sbjct: 5 YYQILGVSKTASQADLKKAYLKLAKQYHPDTTDAKDA-EKKFKEINAAYDVLKDEQKRAA 63
Query: 102 YD 103
YD
Sbjct: 64 YD 65
>gnl|CDD|173534 PTZ00341, PTZ00341, Ring-infected erythrocyte surface antigen;
Provisional.
Length = 1136
Score = 50.9 bits (121), Expect = 2e-07
Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 39 DHTHYEILELERNCSPKEIRSAFIRLSKQFHPDKNPSNPALHDKFVKLNEAYSILNDMDR 98
D Y+IL + N KEI + +L++ ++P K N H KF K+NEAY IL D+D+
Sbjct: 572 DTLFYDILGVGVNADMKEISERYFKLAENYYPPKRSGNEGFH-KFKKINEAYQILGDIDK 630
Query: 99 RRNYDASLNLQTVRQNMFVHKT 120
++ Y+ ++ F+H +
Sbjct: 631 KKMYN-KFGYDGIKGVNFIHPS 651
>gnl|CDD|227694 COG5407, SEC63, Preprotein translocase subunit Sec63 [Intracellular
trafficking and secretion].
Length = 610
Score = 48.0 bits (114), Expect = 2e-06
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 5/65 (7%)
Query: 43 YEILELERNCSPKEIRSAFIRLSKQFHPDK-----NPSNPALHDKFVKLNEAYSILNDMD 97
YEIL ++++ S ++I+ + LS +FHPDK N +K+ + +AY +L D
Sbjct: 101 YEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKK 160
Query: 98 RRRNY 102
RR NY
Sbjct: 161 RRENY 165
>gnl|CDD|222986 PHA03102, PHA03102, Small T antigen; Reviewed.
Length = 153
Score = 34.6 bits (80), Expect = 0.015
Identities = 18/69 (26%), Positives = 28/69 (40%), Gaps = 12/69 (17%)
Query: 44 EILELERNCSPKE--IRSAFIRLSKQFHPDKNPSNPALHDKFVKLNEAYSILNDMDRRRN 101
++L L R+ +R A++R +FHPDK +K +LN Y + R
Sbjct: 9 DLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGGD----EEKMKELNTLY------KKFRE 58
Query: 102 YDASLNLQT 110
SL
Sbjct: 59 SVKSLRDLD 67
>gnl|CDD|236512 PRK09430, djlA, Dna-J like membrane chaperone protein; Provisional.
Length = 267
Score = 32.1 bits (74), Expect = 0.19
Identities = 10/30 (33%), Positives = 19/30 (63%)
Query: 43 YEILELERNCSPKEIRSAFIRLSKQFHPDK 72
Y++L + + +EI+ A+ +L + HPDK
Sbjct: 203 YKVLGVSESDDDQEIKRAYRKLMSEHHPDK 232
>gnl|CDD|222912 PHA02624, PHA02624, large T antigen; Provisional.
Length = 647
Score = 32.3 bits (74), Expect = 0.22
Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 6/54 (11%)
Query: 44 EILELERNCSPKE--IRSAFIRLSKQFHPDKNPSNPALHDKFVKLNEAYSILND 95
++L L +R A++R K++HPDK +K +LN Y L +
Sbjct: 15 DLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKGGD----EEKMKRLNSLYKKLQE 64
>gnl|CDD|218127 pfam04522, DUF585, Protein of unknown function (DUF585). This
region represents the N terminus of bromovirus 2a
protein, and is always found N terminal to a predicted
RNA-dependent RNA polymerase region (pfam00978).
Length = 248
Score = 31.7 bits (72), Expect = 0.23
Identities = 17/82 (20%), Positives = 35/82 (42%), Gaps = 7/82 (8%)
Query: 34 YSSGQDHTHYEILELERNCSPKEIRSAFIRLSKQFHPDKNPSNPALHDKFVKLNEAYSIL 93
+S+ +D H +L + +E + +++ D PS L D++V +E ++ L
Sbjct: 138 FSADEDDIHQNSEDLTEVLA-EENGTLESEEARETS-DSFPSELTLGDRYVVTSEEFASL 195
Query: 94 NDMDRRRNYDASLNLQTVRQNM 115
+Y +LNL +
Sbjct: 196 ES-----DYQVTLNLTNPVEQR 212
>gnl|CDD|227594 COG5269, ZUO1, Ribosome-associated chaperone zuotin [Translation,
ribosomal structure and biogenesis / Posttranslational
modification, protein turnover, chaperones].
Length = 379
Score = 31.9 bits (72), Expect = 0.26
Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 5/68 (7%)
Query: 42 HYEILELER---NCSPKEIRSAFIRLSKQFHPDKNPSNPALHDK--FVKLNEAYSILNDM 96
Y +L L + P +I A + ++HPDK + F + +A +L D
Sbjct: 45 LYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDR 104
Query: 97 DRRRNYDA 104
R YD+
Sbjct: 105 KLRLQYDS 112
>gnl|CDD|236502 PRK09410, ulaA, PTS system ascorbate-specific transporter subunit
IIC; Reviewed.
Length = 452
Score = 30.6 bits (70), Expect = 0.84
Identities = 11/51 (21%), Positives = 19/51 (37%), Gaps = 2/51 (3%)
Query: 147 KRNESIHVPKFLHKFE--TLSKATLVMLLIGVATGALGLQILAVQYSKTFP 195
K E I +PK L T+S A + + +A G++ +
Sbjct: 205 KSTEDIKLPKSLSFLRDSTVSTAITMTIFFLIAALFAGIEYVEEMAGGQNF 255
>gnl|CDD|211601 TIGR00714, hscB, Fe-S protein assembly co-chaperone HscB. This
model describes the small subunit, Hsc20 (20K heat shock
cognate protein) of a pair of proteins Hsc66-Hsc20,
related to the DnaK-DnaJ heat shock proteins, which also
serve as molecular chaperones. Hsc20, unlike DnaJ,
appears not to have chaperone activity on its own, but
to act solely as a regulatory subunit for Hsc66 (i.e.,
to be a co-chaperone). The gene for Hsc20 in E. coli,
hscB, is not induced by heat shock [Protein fate,
Protein folding and stabilization].
Length = 155
Score = 29.1 bits (65), Expect = 1.3
Identities = 24/105 (22%), Positives = 36/105 (34%), Gaps = 11/105 (10%)
Query: 55 KEIRSAFIRLSKQFHPDKNPS---NPALHDKFVKLNEAYSILNDMDRRRNYDASLNLQTV 111
+R + +L Q+HPD + A + LN+AY L D RR Y L L +
Sbjct: 6 SRLRKRYRQLQAQYHPDASGMAQEQLAASQQSTTLNQAYHTLKDPLRRAEY--MLKLLNI 63
Query: 112 RQNMFVHKTRARSS------YSDSGERPENWKDYYDFAAQMKRNE 150
R + D + E D K+N+
Sbjct: 64 DLTQEQTSERDTAFPMELLKVRDELDEIEQMDDEAGLELLEKQNK 108
>gnl|CDD|237262 PRK12997, PRK12997, PTS system ascorbate-specific transporter
subunit IIC; Reviewed.
Length = 466
Score = 29.5 bits (67), Expect = 1.7
Identities = 12/43 (27%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 147 KRNESIHVPKFLHKFE--TLSKATLVMLLIGVATGALGLQILA 187
K E++ +PK+L F ++ A ++++ G+ A G I+A
Sbjct: 220 KSTENLKLPKWLSIFRDTVVAIAIVMLVFFGIILLAAGPDIMA 262
>gnl|CDD|219242 pfam06963, FPN1, Ferroportin1 (FPN1). This family represents a
conserved region approximately 100 residues long within
eukaryotic Ferroportin1 (FPN1), a protein that may play
a role in iron export from the cell. This family may
represent a number of transmembrane regions in
Ferroportin1.
Length = 432
Score = 28.8 bits (65), Expect = 2.8
Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 16/60 (26%)
Query: 163 TLSKATLVMLLIGVATGALGLQI--LAVQY--------SKTFPRNVVNSREMEIS-QNLM 211
+S + +L GVA +GL LAV S+ RNVV ++ S Q+L
Sbjct: 350 PMSALSAFLLFGGVALSRIGLWSFDLAVTQLMQEGVPESE---RNVVGG--VQNSLQSLF 404
>gnl|CDD|166894 PRK00294, hscB, co-chaperone HscB; Provisional.
Length = 173
Score = 28.3 bits (63), Expect = 2.8
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 7/61 (11%)
Query: 64 LSKQFHPDKNPSNP------ALHDKFVKLNEAYSILNDMDRRRNYDASLNLQTVRQNMFV 117
L+++ HPD+ P AL ++ LNEAY L RR Y +L+ V + V
Sbjct: 30 LAREVHPDRFADAPEREQRLAL-ERSASLNEAYQTLKSPPRRARYLLALSGHEVPLEVTV 88
Query: 118 H 118
H
Sbjct: 89 H 89
>gnl|CDD|233288 TIGR01139, cysK, cysteine synthase A. This model distinguishes
cysteine synthase A (CysK) from cysteine synthase B
(CysM). CysM differs in having a broader specificity
that also allows the use of thiosulfate to produce
cysteine thiosulfonate [Amino acid biosynthesis, Serine
family].
Length = 298
Score = 28.5 bits (64), Expect = 3.2
Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 7/36 (19%)
Query: 64 LSKQFHPDKNPSNPALHDKFVKLNEAYSILNDMDRR 99
+ +QF +NP+NP +H K I D D +
Sbjct: 135 MLQQF---ENPANPEIHRK----TTGPEIWRDTDGK 163
>gnl|CDD|179914 PRK05014, hscB, co-chaperone HscB; Provisional.
Length = 171
Score = 27.9 bits (63), Expect = 3.3
Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 14/66 (21%)
Query: 64 LSKQFHPDKNPSNPALHDKFVKL------NEAYSILNDMDRRRNYDASLN-------LQT 110
L +QFHPDK + ++ + + N+AY L +R Y SL+ T
Sbjct: 27 LQRQFHPDKFANASE-RERLLAVQQAATINDAYQTLKHPLKRAEYLLSLHGFDLAHEQHT 85
Query: 111 VRQNMF 116
VR F
Sbjct: 86 VRDTAF 91
>gnl|CDD|177977 PLN02343, PLN02343, allene oxide cyclase.
Length = 229
Score = 27.8 bits (62), Expect = 4.2
Identities = 23/89 (25%), Positives = 36/89 (40%), Gaps = 14/89 (15%)
Query: 11 TNTFNSKSAFFLFNRTGLCCNQRYSSGQDHTHYEILELERNCSPKEIRSAFIRLSKQFHP 70
T + + N R + Q+ + YEI E +R SP AF++LSK+
Sbjct: 31 FTTSKNLTVTRALFSNKANENPRPTKVQELSVYEINERDRG-SP-----AFLKLSKK--- 81
Query: 71 DKNPSNPALHDKFVKLNEAYSILNDMDRR 99
AL D N+ Y+ D+ +R
Sbjct: 82 ---SVENALGDLVPFTNKLYT--GDLKKR 105
>gnl|CDD|237005 PRK11864, PRK11864, 2-ketoisovalerate ferredoxin oxidoreductase
subunit beta; Provisional.
Length = 300
Score = 27.7 bits (62), Expect = 5.4
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 140 YDFAAQMKRNESIHVPKFLHKF 161
DF ++K+ + I KF+H
Sbjct: 184 EDFIRKLKKAKEIRGFKFIHLL 205
>gnl|CDD|143627 cd07762, CYTH-like_Pase_1, Uncharacterized subgroup 1 of the
CYTH-like superfamily. Enzymes belonging to the
CYTH-like (also known as triphosphate tunnel
metalloenzyme (TTM)-like) superfamily hydrolyze
triphosphate-containing substrates, require metal
cations as cofactors, and have a unique active site
located at the center of an eight-stranded antiparallel
beta barrel tunnel (the triphosphate tunnel). The name
CYTH originated from the gene designation for bacterial
class IV adenylyl cyclases (CyaB) and from thiamine
triphosphatase. Class IV adenylate cyclases catalyze the
conversion of ATP to 3',5'-cyclic AMP (cAMP) and PPi.
Thiamine triphosphatase is a soluble cytosolic enzyme
which converts thiamine triphosphate to thiamine
diphosphate. This domain superfamily also contains RNA
triphosphatases, membrane-associated polyphosphate
polymerases, tripolyphosphatases, nucleoside
triphosphatases, nucleoside tetraphosphatases and other
proteins with unknown functions. Proteins of this
subgroup are of bacterial origin and have not been
characterized.
Length = 180
Score = 27.2 bits (61), Expect = 6.2
Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Query: 34 YSSGQDHTHYEILELERNCSPKEIRSAFIRLSKQFHPDKNPS 75
+S T YE LE E + + AF+ L KQ++ P+
Sbjct: 133 HSLYLGITDYE-LEYE-VDDYEAGKKAFLELLKQYNIPYRPA 172
>gnl|CDD|215910 pfam00420, Oxidored_q2, NADH-ubiquinone/plastoquinone
oxidoreductase chain 4L.
Length = 96
Score = 25.9 bits (58), Expect = 7.2
Identities = 9/26 (34%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
Query: 169 LVMLLIGVATGALGLQILAVQYSKTF 194
L +L+ ALGL +L V +T
Sbjct: 59 LTLLVFAACEAALGLALL-VALYRTH 83
>gnl|CDD|225455 COG2902, COG2902, NAD-specific glutamate dehydrogenase [Amino acid
transport and metabolism].
Length = 1592
Score = 27.7 bits (62), Expect = 7.9
Identities = 20/98 (20%), Positives = 35/98 (35%), Gaps = 9/98 (9%)
Query: 26 TGLCCNQRYSSGQDHTHYEILELERNCSPKEIRSAFIRLSKQFHPDKNPSNPALHDKFVK 85
G +Q Y + T + ++ R+ + F D N + AL DK +
Sbjct: 664 AGFPYSQSY---IEATLNKHPDIARS-----LVDLFDARFDPSIKDSNKAAEALLDKIEE 715
Query: 86 LNEAYSILNDMDRRRNYDASLNLQTVRQNMFVHKTRAR 123
+A L++ R + +L T+R N F
Sbjct: 716 ALDAVPSLDEDRILRRF-VNLVKATLRTNYFQLDGHGT 752
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.131 0.387
Gapped
Lambda K H
0.267 0.0769 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 11,982,518
Number of extensions: 1076927
Number of successful extensions: 1120
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1097
Number of HSP's successfully gapped: 58
Length of query: 244
Length of database: 10,937,602
Length adjustment: 94
Effective length of query: 150
Effective length of database: 6,768,326
Effective search space: 1015248900
Effective search space used: 1015248900
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.0 bits)