RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5201
(244 letters)
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain,
endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Length = 210
Score = 88.0 bits (218), Expect = 2e-21
Identities = 29/61 (47%), Positives = 41/61 (67%)
Query: 43 YEILELERNCSPKEIRSAFIRLSKQFHPDKNPSNPALHDKFVKLNEAYSILNDMDRRRNY 102
Y +L + + S +EIR AF +L+ + HPDKNP+NP H F+K+N AY +L D D R+ Y
Sbjct: 5 YSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKY 64
Query: 103 D 103
D
Sbjct: 65 D 65
>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR
{Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A
Length = 103
Score = 82.7 bits (205), Expect = 1e-20
Identities = 24/61 (39%), Positives = 37/61 (60%)
Query: 43 YEILELERNCSPKEIRSAFIRLSKQFHPDKNPSNPALHDKFVKLNEAYSILNDMDRRRNY 102
YEIL + + +EIR A+ RL+ ++HPD+N + KF ++ EAY +L D +R Y
Sbjct: 6 YEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAY 65
Query: 103 D 103
D
Sbjct: 66 D 66
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 79
Score = 80.0 bits (198), Expect = 6e-20
Identities = 28/61 (45%), Positives = 43/61 (70%)
Query: 43 YEILELERNCSPKEIRSAFIRLSKQFHPDKNPSNPALHDKFVKLNEAYSILNDMDRRRNY 102
Y+IL + RN S KEI+ A+ +L+K++HPD N +P +KF +L EAY +L+D +R+ Y
Sbjct: 10 YQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRKQY 69
Query: 103 D 103
D
Sbjct: 70 D 70
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone,
helix-turn-helix, structural genomics, NPPSFA; NMR {Mus
musculus}
Length = 109
Score = 80.9 bits (200), Expect = 6e-20
Identities = 25/61 (40%), Positives = 42/61 (68%)
Query: 43 YEILELERNCSPKEIRSAFIRLSKQFHPDKNPSNPALHDKFVKLNEAYSILNDMDRRRNY 102
Y +L L++N + +I+ ++ +L+ ++HPDKNP NP DKF ++N A++IL D +R Y
Sbjct: 20 YHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRNIY 79
Query: 103 D 103
D
Sbjct: 80 D 80
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone,
helix-turn-helix, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 112
Score = 80.6 bits (199), Expect = 9e-20
Identities = 24/78 (30%), Positives = 39/78 (50%)
Query: 26 TGLCCNQRYSSGQDHTHYEILELERNCSPKEIRSAFIRLSKQFHPDKNPSNPALHDKFVK 85
+G+ Y S +Y +L + S ++I + F + + HPDK+P NP + F K
Sbjct: 6 SGMDAILNYRSEDTEDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQK 65
Query: 86 LNEAYSILNDMDRRRNYD 103
L +A IL + + R YD
Sbjct: 66 LQKAKEILTNEESRARYD 83
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain,
all helix protein, chaperone, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 99
Score = 80.2 bits (198), Expect = 1e-19
Identities = 17/61 (27%), Positives = 35/61 (57%)
Query: 43 YEILELERNCSPKEIRSAFIRLSKQFHPDKNPSNPALHDKFVKLNEAYSILNDMDRRRNY 102
Y++L + + +I++A+ R +HPD+N + ++F ++++AY +L RR Y
Sbjct: 20 YDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRRKY 79
Query: 103 D 103
D
Sbjct: 80 D 80
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics,
PSI-2, protein STRU initiative; 2.90A {Klebsiella
pneumoniae subsp} PDB: 2kqx_A
Length = 329
Score = 83.1 bits (206), Expect = 7e-19
Identities = 24/62 (38%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 43 YEILELERNCSPKEIRSAFIRLSKQFHPDKNPSNPALHDKFVKLNEAYSILNDMDRRRNY 102
Y IL ++ K I++A+ RL++++HPD + N A KF L EA+ +L D RR Y
Sbjct: 31 YAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDA-EAKFKDLAEAWEVLKDEQRRAEY 89
Query: 103 DA 104
D
Sbjct: 90 DQ 91
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain,
chaperone; NMR {Homo sapiens}
Length = 155
Score = 77.2 bits (190), Expect = 5e-18
Identities = 18/84 (21%), Positives = 39/84 (46%), Gaps = 6/84 (7%)
Query: 41 THYEILELERNCSPKEIRSAFIRLSKQFHPDKNPSNPALH------DKFVKLNEAYSILN 94
Y IL + + + +++ + +L +HPDK ++ KF+++++A+ IL
Sbjct: 11 DWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILG 70
Query: 95 DMDRRRNYDASLNLQTVRQNMFVH 118
+ + +R YD +R V
Sbjct: 71 NEETKREYDLQRCEDDLRNVGPVD 94
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin,
endoplasmic reticulum, oxidoreducta; 2.40A {Mus
musculus}
Length = 780
Score = 81.7 bits (201), Expect = 5e-18
Identities = 31/119 (26%), Positives = 50/119 (42%)
Query: 29 CCNQRYSSGQDHTHYEILELERNCSPKEIRSAFIRLSKQFHPDKNPSNPALHDKFVKLNE 88
+ D Y +L + + S +EIR AF +L+ + HPDKNP+NP H F+K+N
Sbjct: 10 HSSGHIEGRHDQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINR 69
Query: 89 AYSILNDMDRRRNYDASLNLQTVRQNMFVHKTRARSSYSDSGERPENWKDYYDFAAQMK 147
AY +L D D R+ YD +++ + Y + +
Sbjct: 70 AYEVLKDEDLRKKYDKYGEKGLEDNQGGQYESWSYYRYDFGIYDDDPEIITLERREFDA 128
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone,
helix-turn-helix, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 88
Score = 74.7 bits (184), Expect = 1e-17
Identities = 25/61 (40%), Positives = 42/61 (68%), Gaps = 1/61 (1%)
Query: 43 YEILELERNCSPKEIRSAFIRLSKQFHPDKNPSNPALHDKFVKLNEAYSILNDMDRRRNY 102
Y+IL + ++ S ++I+ AF +L+ ++HPDKN +P KF ++ EAY L+D +RR+ Y
Sbjct: 10 YDILGVPKSASERQIKKAFHKLAMKYHPDKNK-SPDAEAKFREIAEAYETLSDANRRKEY 68
Query: 103 D 103
D
Sbjct: 69 D 69
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix
motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 92
Score = 74.3 bits (183), Expect = 2e-17
Identities = 25/62 (40%), Positives = 42/62 (67%), Gaps = 1/62 (1%)
Query: 43 YEILELERNCSPKEIRSAFIRLSKQFHPDKNPSNPAL-HDKFVKLNEAYSILNDMDRRRN 101
YE+L ++ + SP++I+ A+ +L+ ++HPDKNP N KF ++EAY +L+D +R
Sbjct: 12 YEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRSL 71
Query: 102 YD 103
YD
Sbjct: 72 YD 73
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone,
helix-turn-helix, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 78
Score = 73.4 bits (181), Expect = 2e-17
Identities = 23/61 (37%), Positives = 41/61 (67%), Gaps = 1/61 (1%)
Query: 43 YEILELERNCSPKEIRSAFIRLSKQFHPDKNPSNPALHDKFVKLNEAYSILNDMDRRRNY 102
YEIL + R S ++++ A+ RL+ +FHPDKN + A + F + AY++L++ ++R+ Y
Sbjct: 10 YEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGA-TEAFKAIGTAYAVLSNPEKRKQY 68
Query: 103 D 103
D
Sbjct: 69 D 69
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular
chaperone, NPPSFA; NMR {Mus musculus}
Length = 88
Score = 73.9 bits (182), Expect = 2e-17
Identities = 23/61 (37%), Positives = 44/61 (72%), Gaps = 1/61 (1%)
Query: 43 YEILELERNCSPKEIRSAFIRLSKQFHPDKNPSNPALHDKFVKLNEAYSILNDMDRRRNY 102
Y +L + R S +I+ A+ +L++++HPDKN +P D+F+++++AY IL++ ++R NY
Sbjct: 20 YRVLGVSRTASQADIKKAYKKLAREWHPDKNK-DPGAEDRFIQISKAYEILSNEEKRTNY 78
Query: 103 D 103
D
Sbjct: 79 D 79
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on
protein structural and functional analyses; NMR {Homo
sapiens}
Length = 82
Score = 73.4 bits (181), Expect = 2e-17
Identities = 24/62 (38%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Query: 43 YEILELERNCSPKEIRSAFIRLSKQFHPDKNPSNPAL-HDKFVKLNEAYSILNDMDRRRN 101
YE+L++ R S + I+ A+ +L+ ++HPDKNP N +F ++ EAY +L+D +R
Sbjct: 12 YEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKRDI 71
Query: 102 YD 103
YD
Sbjct: 72 YD 73
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP:
a.2.3.1
Length = 77
Score = 73.0 bits (180), Expect = 3e-17
Identities = 24/61 (39%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 43 YEILELERNCSPKEIRSAFIRLSKQFHPDKNPSNPALHDKFVKLNEAYSILNDMDRRRNY 102
Y+ L L R S +EI+ A+ R + ++HPDKN A +KF ++ EAY +L+D +R +
Sbjct: 6 YQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGA-EEKFKEIAEAYDVLSDPRKREIF 64
Query: 103 D 103
D
Sbjct: 65 D 65
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated
protein RAP1, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 90
Score = 73.2 bits (180), Expect = 3e-17
Identities = 14/63 (22%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
Query: 42 HYEILELERNCSPKEIRSAFIRLSKQFHPDKNPSNPALHDKFVKLNEAYSILNDMDRRRN 101
+++L ++ S E+ A+ +L+ HPDK P D F + A + L +
Sbjct: 29 SWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCV-APGSEDAFKAVVNARTALLKNIKSGP 87
Query: 102 YDA 104
Sbjct: 88 SSG 90
>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon,
chaperone; NMR {Homo sapiens}
Length = 99
Score = 72.8 bits (179), Expect = 6e-17
Identities = 27/62 (43%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Query: 43 YEILELERNCSPKEIRSAFIRLSKQFHPDKNPSNPAL-HDKFVKLNEAYSILNDMDRRRN 101
YEIL++ R+ S +I+ A+ R + Q+HPDKNP N KF ++ EAY +L+D +R
Sbjct: 5 YEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKREI 64
Query: 102 YD 103
YD
Sbjct: 65 YD 66
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural
genomics, PSI-2, protein structure initiative; 1.25A
{Saccharomyces cerevisiae}
Length = 92
Score = 72.7 bits (179), Expect = 6e-17
Identities = 18/61 (29%), Positives = 38/61 (62%), Gaps = 3/61 (4%)
Query: 43 YEILELERNCSPKEIRSAFIRLSKQFHPDKNPSNPALHDKFVKLNEAYSILNDMDRRRNY 102
Y++L + + + +E++ + + + ++HPDK + +KF +++EA+ ILND +R Y
Sbjct: 11 YDLLGVSPSANEQELKKGYRKAALKYHPDKPTGDT---EKFKEISEAFEILNDPQKREIY 67
Query: 103 D 103
D
Sbjct: 68 D 68
>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, chaperone; NMR {Mus musculus} SCOP:
a.2.3.1
Length = 94
Score = 72.1 bits (177), Expect = 1e-16
Identities = 15/67 (22%), Positives = 36/67 (53%), Gaps = 6/67 (8%)
Query: 43 YEILELERNCSPKEIRSAFIRLSKQFHPDKNPSNPALH------DKFVKLNEAYSILNDM 96
Y IL + + + +++ + +L +HPDK ++ KF+++++A+ IL +
Sbjct: 19 YSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNE 78
Query: 97 DRRRNYD 103
+ ++ YD
Sbjct: 79 ETKKKYD 85
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone,
APC90013.2, structural genomics, protein structure
initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Length = 73
Score = 68.4 bits (168), Expect = 1e-15
Identities = 20/66 (30%), Positives = 45/66 (68%), Gaps = 3/66 (4%)
Query: 38 QDHTHYEILELERNCSPKEIRSAFIRLSKQFHPDKNPSNPALHDKFVKLNEAYSILNDMD 97
++ +Y++L ++ + S E++ A+ +++ +FHPDKNP ++F ++++AY +L+D
Sbjct: 6 KETGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPDG---AEQFKQISQAYEVLSDEK 62
Query: 98 RRRNYD 103
+R+ YD
Sbjct: 63 KRQIYD 68
>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase
regulat protein complex; 3.10A {Simian virus 40} PDB:
2pkg_C
Length = 174
Score = 71.1 bits (174), Expect = 2e-15
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 6/64 (9%)
Query: 42 HYEILELERNC--SPKEIRSAFIRLSKQFHPDKNPSNPALHDKFVKLNEAYSILNDMDRR 99
++L LER+ + +R A+++ K+FHPDK +K K+N Y + D +
Sbjct: 13 LMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD----EEKMKKMNTLYKKMEDGVKY 68
Query: 100 RNYD 103
+
Sbjct: 69 AHQP 72
>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein;
3.20A {Simian virus 40} SCOP: a.2.3.1
Length = 114
Score = 67.5 bits (165), Expect = 8e-15
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 6/63 (9%)
Query: 43 YEILELERNC--SPKEIRSAFIRLSKQFHPDKNPSNPALHDKFVKLNEAYSILNDMDRRR 100
++L LER+ + +R A+++ K+FHPDK +K K+N Y + D +
Sbjct: 11 MDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD----EEKMKKMNTLYKKMEDGVKYA 66
Query: 101 NYD 103
+
Sbjct: 67 HQP 69
>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural
genomics, PSI-2, Pro structure initiative; 1.68A
{Caenorhabditis elegans}
Length = 109
Score = 65.9 bits (161), Expect = 3e-14
Identities = 17/65 (26%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Query: 43 YEILELERN-CSPKEIRSAFIRLSKQFHPDKNPSNPAL---HDKFVKLNEAYSILNDMDR 98
Y++LE+ R +++ A+ L+++ HPD+ + ++F + AY L D +
Sbjct: 18 YDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEA 77
Query: 99 RRNYD 103
+ NYD
Sbjct: 78 KTNYD 82
>1iur_A KIAA0730 protein; DNAJ like domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, unknown function; NMR {Homo sapiens} SCOP:
a.2.3.1
Length = 88
Score = 61.3 bits (149), Expect = 8e-13
Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 4/62 (6%)
Query: 43 YEILELERNCSPKEIRSAFIRLSKQFHPDKNPSNPALHD-KFVKLNEAYSILNDMDRRRN 101
++E E + RL ++HPDKNP N + + F L + L +++
Sbjct: 19 TSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRL---EKQAF 75
Query: 102 YD 103
D
Sbjct: 76 LD 77
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A
{Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Length = 171
Score = 62.3 bits (151), Expect = 3e-12
Identities = 16/73 (21%), Positives = 28/73 (38%), Gaps = 7/73 (9%)
Query: 42 HYEILELERNCS--PKEIRSAFIRLSKQFHPDKNPSNPAL-----HDKFVKLNEAYSILN 94
++ + L + + F L +Q+HPDK S + +N+A+ L
Sbjct: 3 YFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLR 62
Query: 95 DMDRRRNYDASLN 107
R Y SL+
Sbjct: 63 HPLMRAEYLLSLH 75
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304,
center for structural genomics of infectious diseases,
CSGI; 2.15A {Vibrio cholerae}
Length = 174
Score = 62.3 bits (151), Expect = 3e-12
Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 7/73 (9%)
Query: 42 HYEILELER--NCSPKEIRSAFIRLSKQFHPDKNPSNPAL-----HDKFVKLNEAYSILN 94
++E+ L + S F L K+FHPD + + ++N+AY L
Sbjct: 6 YFELFGLPIQFELDGSLLSSQFRALQKRFHPDNFATASERDRLMAVQQAAQINDAYQTLK 65
Query: 95 DMDRRRNYDASLN 107
D RR Y SL
Sbjct: 66 DPLRRAEYLLSLQ 78
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG,
J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Length = 181
Score = 60.0 bits (145), Expect = 2e-11
Identities = 19/74 (25%), Positives = 26/74 (35%), Gaps = 10/74 (13%)
Query: 41 THYEILELERNCSP-------KEIRSAFIRLSKQFHPDKNPSNPALHDKFVKLNEAYSIL 93
T YE+ +R + +L Q HPD ++ LN+AY L
Sbjct: 12 TFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQGS---EQSSTLNQAYHTL 68
Query: 94 NDMDRRRNYDASLN 107
D RR Y L
Sbjct: 69 KDPLRRSQYMLKLL 82
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of
helices, viral protein; NMR {Murine polyomavirus} SCOP:
a.2.3.1
Length = 79
Score = 54.6 bits (131), Expect = 2e-10
Identities = 14/65 (21%), Positives = 23/65 (35%), Gaps = 6/65 (9%)
Query: 43 YEILELERNC--SPKEIRSAFIRLSKQFHPDKNPSNPALHDKFVKLNEAYSILNDMDRRR 100
E+L+L R ++ A+ + S HPDK S H +LN +
Sbjct: 14 LELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGS----HALMQELNSLWGTFKTEVYNL 69
Query: 101 NYDAS 105
+
Sbjct: 70 RMNLG 74
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic
reticulum, protein folding, tetratricopeptiderepeat, J
domain, unfolded protein respons; 3.00A {Homo sapiens}
PDB: 2y4u_A
Length = 450
Score = 55.8 bits (135), Expect = 2e-09
Identities = 20/66 (30%), Positives = 37/66 (56%), Gaps = 3/66 (4%)
Query: 42 HYEILELERNCSPKEIRSAFIRLSKQFHPDKNPSNPAL---HDKFVKLNEAYSILNDMDR 98
+Y+IL ++RN +EI A+ +L+ Q+HPD + KF+ + A +L+D +
Sbjct: 384 YYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEM 443
Query: 99 RRNYDA 104
R+ +D
Sbjct: 444 RKKFDD 449
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural
genomics medical relev protein structure initiative,
PSI-2; 3.00A {Homo sapiens}
Length = 207
Score = 53.2 bits (127), Expect = 8e-09
Identities = 17/120 (14%), Positives = 36/120 (30%), Gaps = 13/120 (10%)
Query: 3 SHLC-SCMKTNTFNSKSAFFLFNRTGLCCNQRYSSGQDHTHYEILELER--NCSPKEIRS 59
C +C + FF C + ++ +++ R +++
Sbjct: 10 YPRCWNCGGPWGPGREDRFFCPQ-----CRALQAPDPTRDYFSLMDCNRSFRVDTAKLQH 64
Query: 60 AFIRLSKQFHPDKNPSNPAL-----HDKFVKLNEAYSILNDMDRRRNYDASLNLQTVRQN 114
+ +L + HPD +N+AY L R Y L+ + +
Sbjct: 65 RYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLAPLSRGLYLLKLHGIEIPER 124
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14;
DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A
{Saccharomyces cerevisiae}
Length = 71
Score = 50.0 bits (120), Expect = 9e-09
Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 5/59 (8%)
Query: 43 YEILELERNC-SPKEIRSAFIRLSKQFHPDKNPSNPALHDKFVKLNEAYSILNDMDRRR 100
+IL L N + K+++ ++ HPDK S K+NEA L +
Sbjct: 17 LQILNLTENTLTKKKLKEVHRKIMLANHPDKGGSP----FLATKINEAKDFLEKRGISK 71
>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP:
a.2.3.1 PDB: 1xi5_J
Length = 182
Score = 51.0 bits (121), Expect = 4e-08
Identities = 12/63 (19%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Query: 43 YEILELERNCSPKEIRSAFIRLSKQFHPDKNPSNPALH---DKFVKLNEAYSILNDMDRR 99
++ + + +P++++ + + HPDK P F++LN+A+S + ++
Sbjct: 120 WKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQK 179
Query: 100 RNY 102
Y
Sbjct: 180 PLY 182
>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like
J-domain containing protein, JAC1, chloroplast
accumulation response; 1.80A {Arabidopsis thaliana}
Length = 106
Score = 42.7 bits (100), Expect = 7e-06
Identities = 13/59 (22%), Positives = 21/59 (35%), Gaps = 7/59 (11%)
Query: 43 YEILELERNCSPKEIRSAFIRLSKQFHPDKNPSNPALHD-------KFVKLNEAYSILN 94
++ + L +R ++ R HPDK A + F L EA+ N
Sbjct: 43 WKPVPLMDMIEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFN 101
>2qwo_B Putative tyrosine-protein phosphatase auxilin;
chaperone-cochaperone complex, ATP-binding,
nucleotide-bindi nucleus, phosphorylation, stress
response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B*
2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A
Length = 92
Score = 41.9 bits (98), Expect = 1e-05
Identities = 10/56 (17%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Query: 43 YEILELERNCSPKEIRSAFIRLSKQFHPDKNPSNPAL---HDKFVKLNEAYSILND 95
++ + + +P++++ + + HP K P F++LN+A+S +
Sbjct: 36 WKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFEN 91
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 36.1 bits (82), Expect = 0.003
Identities = 9/31 (29%), Positives = 16/31 (51%), Gaps = 8/31 (25%)
Query: 49 ERNCSPKEIRSAFIRLSKQFHPDKNPSNPAL 79
E+ + K++++ L K + D S PAL
Sbjct: 18 EKQ-ALKKLQA---SL-KLYADD---SAPAL 40
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 36.8 bits (84), Expect = 0.006
Identities = 46/256 (17%), Positives = 80/256 (31%), Gaps = 56/256 (21%)
Query: 25 RTGLCCNQRYSSGQDHTHYEILELERNC-SPKEIRSAFIRLSKQFHPDKN-PS------- 75
R GL + I+E N P E R F RLS F P + P+
Sbjct: 338 RDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS-VFPPSAHIPTILLSLIW 396
Query: 76 -NPALHDKFVKLNE--AYSILN---DMDRRRNYDASLNLQTVRQNMF-VHKT-----RAR 123
+ D V +N+ YS++ L L+ +N + +H++
Sbjct: 397 FDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIP 456
Query: 124 SSYSDSGERPENWKDY-YDFAA-QMKRNESIH-VPKFLHKFETLS--KATLVMLLIGVAT 178
++ P Y Y +K E + F F + + A
Sbjct: 457 KTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIR--HDSTAW 514
Query: 179 GALG-----LQILAVQYSK-----------------TF-PR---NVVNSREMEISQNLMN 212
A G LQ L Y F P+ N++ S+ ++ + +
Sbjct: 515 NASGSILNTLQQLK-FYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALM 573
Query: 213 ARNDAKKYDLQENIDR 228
A ++A + + + R
Sbjct: 574 AEDEAIFEEAHKQVQR 589
Score = 28.7 bits (63), Expect = 2.0
Identities = 20/133 (15%), Positives = 41/133 (30%), Gaps = 27/133 (20%)
Query: 125 SYSDSGERPENWKDYYDFAAQMKRNESIHV--PK-FLHKFETLS---KATLVMLLIGVAT 178
S D +NWK S++V P + F+ LS + + ++
Sbjct: 336 SIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTIL---- 391
Query: 179 GALGLQILAVQYSKTFPRNVVNSREMEISQNLMNARNDAKKY---DLQ-------ENIDR 228
L ++ K+ VVN ++ +L+ + + EN
Sbjct: 392 ----LSLIWFDVIKSDVMVVVN--KLH-KYSLVEKQPKESTISIPSIYLELKVKLENEYA 444
Query: 229 FAKRYQESYPYRR 241
+ + Y +
Sbjct: 445 LHRSIVDHYNIPK 457
Score = 27.9 bits (61), Expect = 4.0
Identities = 6/64 (9%), Positives = 27/64 (42%), Gaps = 13/64 (20%)
Query: 186 LAVQYSKTFPRNVVNSREMEISQNLMNARNDAKKYDL--------QENI-DRFAKRY-QE 235
+ + P+++++ E++ +++ +++ QE + +F + +
Sbjct: 33 FDCKDVQDMPKSILSKEEID---HIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRI 89
Query: 236 SYPY 239
+Y +
Sbjct: 90 NYKF 93
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 29.6 bits (66), Expect = 1.3
Identities = 20/189 (10%), Positives = 46/189 (24%), Gaps = 67/189 (35%)
Query: 69 HPDKNPSNPALHDKFV--KLNEAYSILNDMDRRRNYDASLNLQTVRQNMFVHKTRARS-- 124
+P P L + L + + Y + L + +
Sbjct: 221 NPSNTPDKDYLLSIPISCPLIGVIQLAH-------YVVTAKLLGFTPGELRSYLKGATGH 273
Query: 125 ----------SYSDSGERPENWKDYYDFAAQMKRNESIHVPKFLHKFETLSKATLVMLLI 174
+ +DS W+ ++ KA V+ I
Sbjct: 274 SQGLVTAVAIAETDS------WESFFVSVR---------------------KAITVLFFI 306
Query: 175 GVATGALGLQILAVQYSKTFPRNVVNSREMEISQNL-------MNARNDAKKYDLQENID 227
GV + +P + +E S M + ++ + +Q+ ++
Sbjct: 307 GVRC-----Y-------EAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVN 354
Query: 228 RFAKRYQES 236
+
Sbjct: 355 KTNSHLPAG 363
>1y7l_A O-acetylserine sulfhydrylase, O-acetylserine (thiol)-lyase; X-RAY
crystallography, sulfhydrylase; HET: LLP; 1.55A
{Haemophilus influenzae} SCOP: c.79.1.1 PDB: 3iqg_X*
3iqh_X* 3iqi_X* 1fcj_A* 1oas_A* 1d6s_A*
Length = 316
Score = 28.3 bits (64), Expect = 2.5
Identities = 10/26 (38%), Positives = 15/26 (57%), Gaps = 4/26 (15%)
Query: 55 KEIRSAFIRLSKQFHPDKNPSNPALH 80
S ++ L KQF +NP+NP +H
Sbjct: 132 ASDPSRYVML-KQF---ENPANPQIH 153
>3m0m_A L-rhamnose isomerase; beta/alpha barrel, HOMO-tetramer,
metal-binding protein, TIM isomerase; HET: AOS; 1.45A
{Pseudomonas stutzeri} PDB: 3m0l_A* 3m0h_A* 3m0v_A*
3m0x_A* 3m0y_A* 3itx_A 2hcv_A* 2i57_A* 2i56_A 3ity_A
3iud_A 3iuh_A 3iui_A 3itv_A* 3itt_A* 3itl_A* 3ito_A*
Length = 438
Score = 27.4 bits (60), Expect = 4.3
Identities = 7/33 (21%), Positives = 15/33 (45%)
Query: 203 EMEISQNLMNARNDAKKYDLQENIDRFAKRYQE 235
E I+Q+++ ND + L+E+ +
Sbjct: 3 EFRIAQDVVARENDRRASALKEDYEALGANLAR 35
>3dlu_A SRP19, signal recognition particle 19 kDa protein; protein-RNA,
cytoplasm, ribonucleoprotein, RNA-binding, RNA binding
protein; 1.80A {Pyrococcus furiosus} PDB: 3dlv_B
Length = 106
Score = 26.3 bits (58), Expect = 4.4
Identities = 10/51 (19%), Positives = 18/51 (35%)
Query: 174 IGVATGALGLQILAVQYSKTFPRNVVNSREMEISQNLMNARNDAKKYDLQE 224
I A L +++ V+ K PR E+ ++ K L+
Sbjct: 37 IVRAAEELKFKVIRVEEDKLNPRLSGIDEELRTFGMIVLESPYGKSKSLKL 87
>3b8i_A PA4872 oxaloacetate decarboxylase; alpha/beta barrel, helix
swapping, lyase; 1.90A {Pseudomonas aeruginosa}
Length = 287
Score = 27.3 bits (61), Expect = 4.8
Identities = 9/23 (39%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
Query: 213 ARNDAKKYDLQENIDRFAKRYQE 235
AR +A+ D+ I R YQE
Sbjct: 158 ARTNAELIDVDAVIQR-TLAYQE 179
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 27.0 bits (59), Expect = 5.4
Identities = 9/50 (18%), Positives = 19/50 (38%), Gaps = 11/50 (22%)
Query: 195 PRNVVNSREMEISQNLMNARNDA----KKYDLQE----NIDRFAKRYQES 236
P ++ RE Q DA + + +E +++ + +R E
Sbjct: 84 PESIRKWRE---EQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQ 130
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.131 0.387
Gapped
Lambda K H
0.267 0.0568 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,516,316
Number of extensions: 192364
Number of successful extensions: 489
Number of sequences better than 10.0: 1
Number of HSP's gapped: 456
Number of HSP's successfully gapped: 48
Length of query: 244
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 153
Effective length of database: 4,160,982
Effective search space: 636630246
Effective search space used: 636630246
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.7 bits)