RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5201
(244 letters)
>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain
{Escherichia coli [TaxId: 562]}
Length = 75
Score = 64.6 bits (157), Expect = 1e-14
Identities = 24/62 (38%), Positives = 38/62 (61%)
Query: 42 HYEILELERNCSPKEIRSAFIRLSKQFHPDKNPSNPALHDKFVKLNEAYSILNDMDRRRN 101
+YEIL + + +EIR A+ RL+ ++HPD+N + KF ++ EAY +L D +R
Sbjct: 5 YYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAA 64
Query: 102 YD 103
YD
Sbjct: 65 YD 66
>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId:
9913]}
Length = 98
Score = 64.6 bits (157), Expect = 3e-14
Identities = 14/78 (17%), Positives = 32/78 (41%), Gaps = 3/78 (3%)
Query: 28 LCCNQRYSSGQDHTHYEILELERNCSPKEIRSAFIRLSKQFHPDKNPSNP---ALHDKFV 84
L T ++ + + +P++++ + + HPDK P F+
Sbjct: 21 LLSTMHTVLWAGETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFM 80
Query: 85 KLNEAYSILNDMDRRRNY 102
+LN+A+S + ++ Y
Sbjct: 81 ELNDAWSEFENQGQKPLY 98
>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3
(J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 94
Score = 61.6 bits (149), Expect = 3e-13
Identities = 14/72 (19%), Positives = 36/72 (50%), Gaps = 6/72 (8%)
Query: 42 HYEILELERNCSPKEIRSAFIRLSKQFHPDKNPSNPALHDK------FVKLNEAYSILND 95
Y IL + + + +++ + +L +HPDK ++ F+++++A+ IL +
Sbjct: 18 WYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGN 77
Query: 96 MDRRRNYDASLN 107
+ ++ YD +
Sbjct: 78 EETKKKYDLQRS 89
>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]}
Length = 77
Score = 57.0 bits (137), Expect = 1e-11
Identities = 24/62 (38%), Positives = 39/62 (62%), Gaps = 1/62 (1%)
Query: 42 HYEILELERNCSPKEIRSAFIRLSKQFHPDKNPSNPALHDKFVKLNEAYSILNDMDRRRN 101
+Y+ L L R S +EI+ A+ R + ++HPDKN A +KF ++ EAY +L+D +R
Sbjct: 5 YYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGA-EEKFKEIAEAYDVLSDPRKREI 63
Query: 102 YD 103
+D
Sbjct: 64 FD 65
>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain
{Escherichia coli [TaxId: 562]}
Length = 76
Score = 57.0 bits (137), Expect = 1e-11
Identities = 16/73 (21%), Positives = 28/73 (38%), Gaps = 7/73 (9%)
Query: 42 HYEILELERNCS--PKEIRSAFIRLSKQFHPDKNPSNPA-----LHDKFVKLNEAYSILN 94
++ + L + + F L +Q+HPDK S + +N+A+ L
Sbjct: 3 YFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLR 62
Query: 95 DMDRRRNYDASLN 107
R Y SL+
Sbjct: 63 HPLMRAEYLLSLH 75
>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain
{Murine polyomavirus [TaxId: 10634]}
Length = 79
Score = 52.7 bits (126), Expect = 4e-10
Identities = 15/72 (20%), Positives = 24/72 (33%), Gaps = 6/72 (8%)
Query: 35 SSGQDHTHYEILELERNC--SPKEIRSAFIRLSKQFHPDKNPSNPALHDKFVKLNEAYSI 92
S E+L+L R ++ A+ + S HPDK S H +LN +
Sbjct: 6 SRADKERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGS----HALMQELNSLWGT 61
Query: 93 LNDMDRRRNYDA 104
+
Sbjct: 62 FKTEVYNLRMNL 73
>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 88
Score = 45.4 bits (107), Expect = 2e-07
Identities = 14/62 (22%), Positives = 22/62 (35%), Gaps = 1/62 (1%)
Query: 43 YEILELERNCSPKEIRSAFIRLSKQFHPDKNPSNPALH-DKFVKLNEAYSILNDMDRRRN 101
++E E + RL ++HPDKNP N + + F L + L
Sbjct: 19 TSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEKQAFLDQ 78
Query: 102 YD 103
Sbjct: 79 NA 80
>d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain
{Simian virus 40, Sv40 [TaxId: 10633]}
Length = 114
Score = 43.2 bits (101), Expect = 2e-06
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 6/64 (9%)
Query: 42 HYEILELERNC--SPKEIRSAFIRLSKQFHPDKNPSNPALHDKFVKLNEAYSILNDMDRR 99
++L LER+ + +R A+++ K+FHPDK +K K+N Y + D +
Sbjct: 10 LMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD----EEKMKKMNTLYKKMEDGVKY 65
Query: 100 RNYD 103
+
Sbjct: 66 AHQP 69
>d1v63a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream
binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 101
Score = 24.8 bits (54), Expect = 4.7
Identities = 4/47 (8%), Positives = 20/47 (42%)
Query: 54 PKEIRSAFIRLSKQFHPDKNPSNPALHDKFVKLNEAYSILNDMDRRR 100
K + + + S++ + ++ L ++ V++ + ++ +
Sbjct: 9 KKPPMNGYQKFSQELLSNGELNHLPLKERMVEIGSRWQRISQSQKEH 55
>d2czca1 d.81.1.1 (A:140-301) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii
[TaxId: 53953]}
Length = 162
Score = 24.4 bits (53), Expect = 9.8
Identities = 10/62 (16%), Positives = 22/62 (35%), Gaps = 7/62 (11%)
Query: 40 HTHYEILELERNCSPKEIRSAFIRLSKQFHPDKNPSNPALHDKFVKLNEAYSILNDMDRR 99
H H ++EL++ + ++ F ++ +K F + D+ R
Sbjct: 78 HVHSVMVELKKPLTKDDVIDIFENTTRVLLFEK-------EKGFDSTAQIIEFARDLHRE 130
Query: 100 RN 101
N
Sbjct: 131 WN 132
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.131 0.387
Gapped
Lambda K H
0.267 0.0544 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 860,631
Number of extensions: 37575
Number of successful extensions: 119
Number of sequences better than 10.0: 1
Number of HSP's gapped: 112
Number of HSP's successfully gapped: 16
Length of query: 244
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 161
Effective length of database: 1,268,006
Effective search space: 204148966
Effective search space used: 204148966
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.2 bits)