BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5202
(343 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
Length = 190
Score = 85.5 bits (210), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 81/187 (43%), Gaps = 14/187 (7%)
Query: 79 SYAMSTTSQEEKNKECEFCGKKFKYENTLQAHRRNHTGEKPFKCTVCDHACSQSAKLKKH 138
S A + EK C CGK F + L H+R HTGEKP+KC C + S L +H
Sbjct: 9 SVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRH 68
Query: 139 MKIHXXXXXXXXXXXXPXXXXXXXXXXXXXXNLCLPNSHMKKES-RRNDTCEFCGKVFKN 197
+ H P NL +H + + + C CGK F
Sbjct: 69 QRTH--------TGEKPYKCPECGKSFSQRANL---RAHQRTHTGEKPYACPECGKSFSQ 117
Query: 198 CSNLTVHRRSHTGEKPYKCELCSYACAQSSKLTRHMKTHGRLGKDVYRCRFCEMPFSVPS 257
++L H+R+HTGEKPYKC C + ++ L H +TH G+ Y+C C FS
Sbjct: 118 LAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTH--TGEKPYKCPECGKSFSRRD 175
Query: 258 TLEKHMR 264
L H R
Sbjct: 176 ALNVHQR 182
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/149 (34%), Positives = 69/149 (46%), Gaps = 12/149 (8%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKPFKCTVCDHACSQSAKLKKHMKIHXXXXXX 148
EK +C CGK F + L H+R HTGEKP+KC C + SQ A L+ H + H
Sbjct: 47 EKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEK-- 104
Query: 149 XXXXXXPXXXXXXXXXXXXXXNLCLPNSHMKKES-RRNDTCEFCGKVFKNCSNLTVHRRS 207
P +L +H + + + C CGK F NL H+R+
Sbjct: 105 ------PYACPECGKSFSQLAHL---RAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRT 155
Query: 208 HTGEKPYKCELCSYACAQSSKLTRHMKTH 236
HTGEKPYKC C + ++ L H +TH
Sbjct: 156 HTGEKPYKCPECGKSFSRRDALNVHQRTH 184
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 33/62 (53%)
Query: 81 AMSTTSQEEKNKECEFCGKKFKYENTLQAHRRNHTGEKPFKCTVCDHACSQSAKLKKHMK 140
A T EK +C CGK F E+ L H+R HTGEKP+KC C + S+ L H +
Sbjct: 123 AHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQR 182
Query: 141 IH 142
H
Sbjct: 183 TH 184
>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|F Chain F, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|G Chain G, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
Length = 87
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 39/86 (45%), Positives = 49/86 (56%), Gaps = 5/86 (5%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKPYKCELCSYACAQSSKLTRHMKTHGRLGKDVYRCR 247
C CGK F SNL H+R+HTGEKPYKC C + +QSS L +H +TH G+ Y+C
Sbjct: 7 CPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTH--TGEKPYKCP 64
Query: 248 FCEMPFSVPSTLEKHMRKCVVNQNMK 273
C FS L +H R +QN K
Sbjct: 65 ECGKSFSRSDHLSRHQR---THQNKK 87
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 35/54 (64%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKPFKCTVCDHACSQSAKLKKHMKIH 142
EK +C CGK F + LQ H+R HTGEKP+KC C + SQS+ L+KH + H
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTH 55
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 33/54 (61%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKPFKCTVCDHACSQSAKLKKHMKIH 142
EK +C CGK F + LQ H+R HTGEKP+KC C + S+S L +H + H
Sbjct: 30 EKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCPECGKSFSRSDHLSRHQRTH 83
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 211 EKPYKCELCSYACAQSSKLTRHMKTHGRLGKDVYRCRFCEMPFSVPSTLEKHMR 264
EKPYKC C + +QSS L +H +TH G+ Y+C C FS S L+KH R
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQRTH--TGEKPYKCPECGKSFSQSSDLQKHQR 53
>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type
Zinc-Binding Domain Of The Zinc Finger Protein 64,
Isoforms 1 And 2
Length = 96
Score = 64.3 bits (155), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 52/119 (43%), Gaps = 38/119 (31%)
Query: 93 ECEFCGKKFKYENTLQAHRRNHTGEKPFKCTVCDHACSQSAKLKKHMKIHXXXXXXXXXX 152
+CE CGK F ++ L+ H R HTG KP+KC CD+A + S+ L KH++IH
Sbjct: 10 KCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIH---------- 59
Query: 153 XXPXXXXXXXXXXXXXXNLCLPNSHMKKESRRNDTCEFCGKVFKNCSNLTVHRRSHTGE 211
R C+ C +N S LTVH RSHTG+
Sbjct: 60 ----------------------------SDERPFKCQICPYASRNSSQLTVHLRSHTGD 90
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKPYKCELCSYACAQSSKLTRHMKTHGRLGKDVYRCR 247
CE CGK F L H R HTG KPYKC+ C YA A SS L +H++ H + ++C+
Sbjct: 11 CEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSD--ERPFKCQ 68
Query: 248 FCEMPFSVPSTLEKHMR 264
C S L H+R
Sbjct: 69 ICPYASRNSSQLTVHLR 85
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 32/49 (65%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKPYKCELCSYACAQSSKLTRHMKTH 236
C+ C + S+L H R H+ E+P+KC++C YA SS+LT H+++H
Sbjct: 39 CKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVHLRSH 87
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 213 PYKCELCSYACAQSSKLTRHMKTHGRLGKDVYRCRFCEMPFSVPSTLEKHMR 264
P+KCE+C ++ KL HM+ H G Y+C+ C+ + S+L KH+R
Sbjct: 8 PHKCEVCGKCFSRKDKLKTHMRCH--TGVKPYKCKTCDYAAADSSSLNKHLR 57
>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345 In
Zinc Finger Protein 278
Length = 95
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 49/80 (61%), Gaps = 2/80 (2%)
Query: 187 TCEFCGKVFKNCSNLTVHRRSHTGEKPYKCELCSYACAQSSKLTRHMKTH-GRLGKDVYR 245
CE CGK+F++ +L H+ SH+GEKPY C +C + +++ H+++H G +GK Y
Sbjct: 9 ACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKP-YI 67
Query: 246 CRFCEMPFSVPSTLEKHMRK 265
C+ C FS P L H+++
Sbjct: 68 CQSCGKGFSRPDHLNGHIKQ 87
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 29/57 (50%)
Query: 86 SQEEKNKECEFCGKKFKYENTLQAHRRNHTGEKPFKCTVCDHACSQSAKLKKHMKIH 142
S CE CGK F+ L H+ +H+GEKP+ C VC + ++ H++ H
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSH 58
Score = 36.2 bits (82), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGE--KPFKCTVCDHACSQSAKLKKHMK 140
EK C CG +FK ++ + H R+H G KP+ C C S+ L H+K
Sbjct: 33 EKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHIK 86
>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2
Domains From Human Kruppel-Like Factor 5
Length = 100
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 50/89 (56%), Gaps = 6/89 (6%)
Query: 181 ESRRNDTCEF--CGKVFKNCSNLTVHRRSHTGEKPYKC--ELCSYACAQSSKLTRHMKTH 236
E RR C++ C KV+ S+L H R+HTGEKPYKC E C + A+S +LTRH + H
Sbjct: 11 EKRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKH 70
Query: 237 GRLGKDVYRCRFCEMPFSVPSTLEKHMRK 265
G ++C C FS L HM++
Sbjct: 71 --TGAKPFQCGVCNRSFSRSDHLALHMKR 97
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 85 TSQEEKNKEC--EFCGKKFKYENTLQAHRRNHTGEKPFKCTVCDHACSQSAKLKKHMKIH 142
T EK +C E C +F + L H R HTG KPF+C VC+ + S+S L HMK H
Sbjct: 39 THTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRH 98
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 28/50 (56%)
Query: 187 TCEFCGKVFKNCSNLTVHRRSHTGEKPYKCELCSYACAQSSKLTRHMKTH 236
T E C F LT H R HTG KP++C +C+ + ++S L HMK H
Sbjct: 49 TWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRH 98
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 33/53 (62%), Gaps = 4/53 (7%)
Query: 94 CEF--CGKKFKYENTLQAHRRNHTGEKPFKCTV--CDHACSQSAKLKKHMKIH 142
C++ C K + + L+AH R HTGEKP+KCT CD ++S +L +H + H
Sbjct: 18 CDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKH 70
>pdb|3UK3|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|3UK3|D Chain D, Crystal Structure Of Znf217 Bound To Dna
pdb|4F2J|C Chain C, Crystal Structure Of Znf217 Bound To Dna, P6522 Crystal
Form
pdb|4IS1|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|4IS1|D Chain D, Crystal Structure Of Znf217 Bound To Dna
Length = 57
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 34/49 (69%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKPYKCELCSYACAQSSKLTRHMKTH 236
C +CGK F++ L +H R+HTGEKPYKCE C YA AQ + L H++ H
Sbjct: 7 CSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 34/52 (65%)
Query: 91 NKECEFCGKKFKYENTLQAHRRNHTGEKPFKCTVCDHACSQSAKLKKHMKIH 142
++EC +CGK F+ L H R HTGEKP+KC C++A +Q L+ H++ H
Sbjct: 4 SRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 90
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 49/83 (59%), Gaps = 6/83 (7%)
Query: 187 TCEF--CGKVFKNCSNLTVHRRSHTGEKPYKCEL--CSYACAQSSKLTRHMKTHGRLGKD 242
TC++ CGK + S+L H R+HTGEKPY C+ C + A+S +LTRH + H G
Sbjct: 8 TCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKH--TGHR 65
Query: 243 VYRCRFCEMPFSVPSTLEKHMRK 265
++C+ C+ FS L HM++
Sbjct: 66 PFQCQKCDRAFSRSDHLALHMKR 88
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 85 TSQEEKNKECEF--CGKKFKYENTLQAHRRNHTGEKPFKCTVCDHACSQSAKLKKHMKIH 142
T EK C++ CG KF + L H R HTG +PF+C CD A S+S L HMK H
Sbjct: 30 THTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRH 89
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 26/46 (56%)
Query: 191 CGKVFKNCSNLTVHRRSHTGEKPYKCELCSYACAQSSKLTRHMKTH 236
CG F LT H R HTG +P++C+ C A ++S L HMK H
Sbjct: 44 CGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRH 89
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 31/53 (58%), Gaps = 4/53 (7%)
Query: 94 CEF--CGKKFKYENTLQAHRRNHTGEKPFKCTV--CDHACSQSAKLKKHMKIH 142
C++ CGK + + L+AH R HTGEKP+ C C ++S +L +H + H
Sbjct: 9 CDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKH 61
>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 89
Score = 61.6 bits (148), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 49/83 (59%), Gaps = 6/83 (7%)
Query: 187 TCEF--CGKVFKNCSNLTVHRRSHTGEKPYKCEL--CSYACAQSSKLTRHMKTHGRLGKD 242
TC++ CGK + S+L H R+HTGEKPY C+ C + A+S +LTRH + H G
Sbjct: 7 TCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKH--TGHR 64
Query: 243 VYRCRFCEMPFSVPSTLEKHMRK 265
++C+ C+ FS L HM++
Sbjct: 65 PFQCQKCDRAFSRSDHLALHMKR 87
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 85 TSQEEKNKECEF--CGKKFKYENTLQAHRRNHTGEKPFKCTVCDHACSQSAKLKKHMKIH 142
T EK C++ CG KF + L H R HTG +PF+C CD A S+S L HMK H
Sbjct: 29 THTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRH 88
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 26/46 (56%)
Query: 191 CGKVFKNCSNLTVHRRSHTGEKPYKCELCSYACAQSSKLTRHMKTH 236
CG F LT H R HTG +P++C+ C A ++S L HMK H
Sbjct: 43 CGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRH 88
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 31/53 (58%), Gaps = 4/53 (7%)
Query: 94 CEF--CGKKFKYENTLQAHRRNHTGEKPFKCTV--CDHACSQSAKLKKHMKIH 142
C++ CGK + + L+AH R HTGEKP+ C C ++S +L +H + H
Sbjct: 8 CDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKH 60
>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domain
Of Zinc Finger Protein 435
Length = 77
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 37/59 (62%)
Query: 178 MKKESRRNDTCEFCGKVFKNCSNLTVHRRSHTGEKPYKCELCSYACAQSSKLTRHMKTH 236
++ RR C+ CGK F + S+L+ HRR+HTGEKPYKC+ C A Q S L H + H
Sbjct: 11 WQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVH 69
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 34/56 (60%)
Query: 87 QEEKNKECEFCGKKFKYENTLQAHRRNHTGEKPFKCTVCDHACSQSAKLKKHMKIH 142
+E + +C+ CGK F + + L HRR HTGEKP+KC C A Q + L H ++H
Sbjct: 14 RERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVH 69
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKP 213
C+ CGK F S+L H R HTG P
Sbjct: 49 CDECGKAFIQRSHLIGHHRVHTGSGP 74
Score = 28.1 bits (61), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKP 119
EK +C+ CGK F + L H R HTG P
Sbjct: 44 EKPYKCDECGKAFIQRSHLIGHHRVHTGSGP 74
>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
pdb|1A1G|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
Length = 90
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 189 EFCGKVFKNCSNLTVHRRSHTGEKPYKCELCSYACAQSSKLTRHMKTHGRLGKDVYRCRF 248
E C + F + SNLT H R HTG+KP++C +C ++S LT H++TH G+ + C
Sbjct: 10 ESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH--TGEKPFACDI 67
Query: 249 CEMPFSVPSTLEKH 262
C F+ ++H
Sbjct: 68 CGRKFARSDERKRH 81
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 50/124 (40%), Gaps = 40/124 (32%)
Query: 117 EKPFKCTV--CDHACSQSAKLKKHMKIHXXXXXXXXXXXXPXXXXXXXXXXXXXXNLCLP 174
E+P+ C V CD S S+ L +H++IH
Sbjct: 2 ERPYACPVESCDRRFSDSSNLTRHIRIHT------------------------------- 30
Query: 175 NSHMKKESRRNDTCEFCGKVFKNCSNLTVHRRSHTGEKPYKCELCSYACAQSSKLTRHMK 234
++ C C + F +LT H R+HTGEKP+ C++C A+S + RH K
Sbjct: 31 -------GQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTK 83
Query: 235 THGR 238
H R
Sbjct: 84 IHLR 87
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 31/54 (57%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKPFKCTVCDHACSQSAKLKKHMKIH 142
+K +C C + F + L H R HTGEKPF C +C ++S + K+H KIH
Sbjct: 32 QKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 28/48 (58%)
Query: 95 EFCGKKFKYENTLQAHRRNHTGEKPFKCTVCDHACSQSAKLKKHMKIH 142
E C ++F + L H R HTG+KPF+C +C S+S L H++ H
Sbjct: 10 ESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 57
>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain
Repeats Of Murine Gli-Kruppel Family Member Hkr3
Length = 124
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 53/141 (37%), Gaps = 35/141 (24%)
Query: 93 ECEFCGKKFKYENTLQAHRRNHTGEKPFKCTVCDHACSQSAKLKKHMKIHXXXXXXXXXX 152
EC C KKF + L+ H R HTGEKPF+C C + L +H
Sbjct: 9 ECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEH-------------- 54
Query: 153 XXPXXXXXXXXXXXXXXNLCLPNSHMKKESRRNDTCEFCGKVFKNCSNLTVHRRSHTGEK 212
C+ S + TC C + F+ L +H SHTGE
Sbjct: 55 ---------------EARNCM------NRSEQVFTCSVCQETFRRRMELRLHMVSHTGEM 93
Query: 213 PYKCELCSYACAQSSKLTRHM 233
PYKC CS Q L HM
Sbjct: 94 PYKCSSCSQQFMQKKDLQSHM 114
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 72 KQEDFQLSYAMSTTSQEEKNKECEFCGKKFKYENTLQAHRRNHTGEKPFKCTVCDHACSQ 131
++E+ A + ++ E+ C C + F+ L+ H +HTGE P+KC+ C Q
Sbjct: 47 RKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQ 106
Query: 132 SAKLKKHM-KIH 142
L+ HM K+H
Sbjct: 107 KKDLQSHMIKLH 118
Score = 36.2 bits (82), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 33/77 (42%), Gaps = 1/77 (1%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKPYKCELCSYACAQSSKLTRH-MKTHGRLGKDVYRC 246
C C K F + L VH R HTGEKP++C C + L H + + V+ C
Sbjct: 10 CPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTC 69
Query: 247 RFCEMPFSVPSTLEKHM 263
C+ F L HM
Sbjct: 70 SVCQETFRRRMELRLHM 86
Score = 31.6 bits (70), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 89 EKNKECEFCGK-KFKYENTLQAHRRN--HTGEKPFKCTVCDHACSQSAKLKKHMKIH 142
EK EC CGK F+ EN L+ RN + E+ F C+VC + +L+ HM H
Sbjct: 33 EKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHMVSH 89
>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The
Human Zinc Finger Protein Zic 3
Length = 155
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 32/53 (60%), Gaps = 4/53 (7%)
Query: 188 CEF--CGKVFKNCSNLTVHRRSHTGEKPYKCEL--CSYACAQSSKLTRHMKTH 236
C F CGK+F NL +H+R+HTGEKP+KCE C A SS +HM H
Sbjct: 93 CPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVH 145
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 40/80 (50%), Gaps = 7/80 (8%)
Query: 70 PSKQEDFQLSYAMST---TSQEEKNKECEF--CGKKFKYENTLQAHRRNHTGEKPFKCTV 124
P + + F+ Y + EK C F CGK F L+ H+R HTGEKPFKC
Sbjct: 66 PREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEF 125
Query: 125 --CDHACSQSAKLKKHMKIH 142
CD + S+ KKHM +H
Sbjct: 126 EGCDRRFANSSDRKKHMHVH 145
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 39/76 (51%), Gaps = 6/76 (7%)
Query: 192 GKVFKNCSNLTVHRRSHTGEKPYKCEL--CSYACAQSSKLTRHMKTHGRLGKDVYRCRF- 248
GK FK L H R HTGEKP+ C C A+S L H +TH G+ ++C F
Sbjct: 69 GKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTH--TGEKPFKCEFE 126
Query: 249 -CEMPFSVPSTLEKHM 263
C+ F+ S +KHM
Sbjct: 127 GCDRRFANSSDRKKHM 142
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 92 KECEFCGKKFKYENTLQAHRRNHTGEKPFKCTV--CDHACSQSAKLKKHMKIH 142
+EC GK FK + L H R HTGEKPF C C ++S LK H + H
Sbjct: 63 EECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTH 115
>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site
pdb|1JK2|A Chain A, Zif268 D20a Mutant Bound To The Gct Dna Site
Length = 90
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 52/124 (41%), Gaps = 40/124 (32%)
Query: 117 EKPFKCTV--CDHACSQSAKLKKHMKIHXXXXXXXXXXXXPXXXXXXXXXXXXXXNLCLP 174
E+P+ C V CD S+SA+L +H++IH
Sbjct: 2 ERPYACPVESCDRRFSRSAELTRHIRIHT------------------------------- 30
Query: 175 NSHMKKESRRNDTCEFCGKVFKNCSNLTVHRRSHTGEKPYKCELCSYACAQSSKLTRHMK 234
++ C C + F +LT H R+HTGEKP+ C++C A+S + RH K
Sbjct: 31 -------GQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTK 83
Query: 235 THGR 238
H R
Sbjct: 84 IHLR 87
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Query: 189 EFCGKVFKNCSNLTVHRRSHTGEKPYKCELCSYACAQSSKLTRHMKTHGRLGKDVYRCRF 248
E C + F + LT H R HTG+KP++C +C ++S LT H++TH G+ + C
Sbjct: 10 ESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH--TGEKPFACDI 67
Query: 249 CEMPFSVPSTLEKH 262
C F+ ++H
Sbjct: 68 CGRKFARSDERKRH 81
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 31/54 (57%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKPFKCTVCDHACSQSAKLKKHMKIH 142
+K +C C + F + L H R HTGEKPF C +C ++S + K+H KIH
Sbjct: 32 QKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 27/48 (56%)
Query: 95 EFCGKKFKYENTLQAHRRNHTGEKPFKCTVCDHACSQSAKLKKHMKIH 142
E C ++F L H R HTG+KPF+C +C S+S L H++ H
Sbjct: 10 ESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 57
>pdb|1X6E|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Zinc Finger Protein 24
Length = 72
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 32/54 (59%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKPFKCTVCDHACSQSAKLKKHMKIH 142
EK C CGK F + L H+R HTGEKP+KC C A SQ++ L H +IH
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 29/49 (59%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKPYKCELCSYACAQSSKLTRHMKTH 236
C CGK F S L H+R HTGEKPYKC C A +Q+S L H + H
Sbjct: 17 CVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 211 EKPYKCELCSYACAQSSKLTRHMKTHGRLGKDVYRCRFCEMPFSVPSTLEKHMR 264
EKPY C C A ++SS L +H + H G+ Y+C C FS S L H R
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVH--TGEKPYKCLECGKAFSQNSGLINHQR 63
>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 50/124 (40%), Gaps = 40/124 (32%)
Query: 117 EKPFKCTV--CDHACSQSAKLKKHMKIHXXXXXXXXXXXXPXXXXXXXXXXXXXXNLCLP 174
E+P+ C V CD SQS L +H++IH
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHT------------------------------- 30
Query: 175 NSHMKKESRRNDTCEFCGKVFKNCSNLTVHRRSHTGEKPYKCELCSYACAQSSKLTRHMK 234
++ C C + F +LT H R+HTGEKP+ C++C A+S + RH K
Sbjct: 31 -------GQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTK 83
Query: 235 THGR 238
H R
Sbjct: 84 IHLR 87
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Query: 189 EFCGKVFKNCSNLTVHRRSHTGEKPYKCELCSYACAQSSKLTRHMKTHGRLGKDVYRCRF 248
E C + F +LT H R HTG+KP++C +C ++S LT H++TH G+ + C
Sbjct: 10 ESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH--TGEKPFACDI 67
Query: 249 CEMPFSVPSTLEKH 262
C F+ ++H
Sbjct: 68 CGRKFARSDERKRH 81
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 31/54 (57%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKPFKCTVCDHACSQSAKLKKHMKIH 142
+K +C C + F + L H R HTGEKPF C +C ++S + K+H KIH
Sbjct: 32 QKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 28/48 (58%)
Query: 95 EFCGKKFKYENTLQAHRRNHTGEKPFKCTVCDHACSQSAKLKKHMKIH 142
E C ++F +L H R HTG+KPF+C +C S+S L H++ H
Sbjct: 10 ESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 57
>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
pdb|1A1J|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
pdb|1A1K|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
Length = 90
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 51/124 (41%), Gaps = 40/124 (32%)
Query: 117 EKPFKCTV--CDHACSQSAKLKKHMKIHXXXXXXXXXXXXPXXXXXXXXXXXXXXNLCLP 174
E+P+ C V CD S+SA L +H++IH
Sbjct: 2 ERPYACPVESCDRRFSRSADLTRHIRIHT------------------------------- 30
Query: 175 NSHMKKESRRNDTCEFCGKVFKNCSNLTVHRRSHTGEKPYKCELCSYACAQSSKLTRHMK 234
++ C C + F +LT H R+HTGEKP+ C++C A+S + RH K
Sbjct: 31 -------GQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTK 83
Query: 235 THGR 238
H R
Sbjct: 84 IHLR 87
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 189 EFCGKVFKNCSNLTVHRRSHTGEKPYKCELCSYACAQSSKLTRHMKTHGRLGKDVYRCRF 248
E C + F ++LT H R HTG+KP++C +C ++S LT H++TH G+ + C
Sbjct: 10 ESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH--TGEKPFACDI 67
Query: 249 CEMPFSVPSTLEKH 262
C F+ ++H
Sbjct: 68 CGRKFARSDERKRH 81
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 31/54 (57%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKPFKCTVCDHACSQSAKLKKHMKIH 142
+K +C C + F + L H R HTGEKPF C +C ++S + K+H KIH
Sbjct: 32 QKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 27/48 (56%)
Query: 95 EFCGKKFKYENTLQAHRRNHTGEKPFKCTVCDHACSQSAKLKKHMKIH 142
E C ++F L H R HTG+KPF+C +C S+S L H++ H
Sbjct: 10 ESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 57
>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2JPA|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2PRT|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
Length = 119
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 57/144 (39%), Gaps = 42/144 (29%)
Query: 97 CGKKFKYENTLQAHRRNHTGEKPFKCTV--CDHACSQSAKLKKHMKIHXXXXXXXXXXXX 154
C K++ + LQ H R HTGEKP++C C+ S+S +LK+H + H
Sbjct: 14 CNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQ----- 68
Query: 155 PXXXXXXXXXXXXXXNLCLPNSHMKKESRRNDTCEFCGKVFKNCSNLTVHRRSHTGEKPY 214
C+ C + F +L H R+HTGEKP+
Sbjct: 69 ---------------------------------CKTCQRKFSRSDHLKTHTRTHTGEKPF 95
Query: 215 KCEL--CSYACAQSSKLTRHMKTH 236
C C A+S +L RH H
Sbjct: 96 SCRWPSCQKKFARSDELVRHHNMH 119
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 4/76 (5%)
Query: 191 CGKVFKNCSNLTVHRRSHTGEKPYKCEL--CSYACAQSSKLTRHMKTHGRLGKDVYRCRF 248
C K + S+L +H R HTGEKPY+C+ C ++S +L RH + H G ++C+
Sbjct: 14 CNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRH--TGVKPFQCKT 71
Query: 249 CEMPFSVPSTLEKHMR 264
C+ FS L+ H R
Sbjct: 72 CQRKFSRSDHLKTHTR 87
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Query: 76 FQLSYAM--STTSQEEKNKECEF--CGKKFKYENTLQAHRRNHTGEKPFKCTVCDHACSQ 131
F+LS+ S EK +C+F C ++F + L+ H+R HTG KPF+C C S+
Sbjct: 19 FKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSR 78
Query: 132 SAKLKKHMKIH 142
S LK H + H
Sbjct: 79 SDHLKTHTRTH 89
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 49/96 (51%), Gaps = 11/96 (11%)
Query: 176 SHMKKESRRND-----TCEF--CGKVFKNCSNLTVHRRSHTGEKPYKCELCSYACAQSSK 228
SH++ SR++ C+F C + F L H+R HTG KP++C+ C ++S
Sbjct: 22 SHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDH 81
Query: 229 LTRHMKTHGRLGKDVYRCRF--CEMPFSVPSTLEKH 262
L H +TH G+ + CR+ C+ F+ L +H
Sbjct: 82 LKTHTRTH--TGEKPFSCRWPSCQKKFARSDELVRH 115
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 93 ECEFCGKKFKYENTLQAHRRNHTGEKPFKCTV--CDHACSQSAKLKKHMKIH 142
+C+ C +KF + L+ H R HTGEKPF C C ++S +L +H +H
Sbjct: 68 QCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
pdb|1G2D|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
Length = 90
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Query: 189 EFCGKVFKNCSNLTVHRRSHTGEKPYKCELCSYACAQSSKLTRHMKTHGRLGKDVYRCRF 248
E C + F +NL H R HTG+KP++C +C +Q + L +H++TH G+ + C
Sbjct: 10 ESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTH--TGEKPFACDI 67
Query: 249 CEMPFSVPSTLEKHMR 264
C F+ T ++H +
Sbjct: 68 CGRKFATLHTRDRHTK 83
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 28/48 (58%)
Query: 95 EFCGKKFKYENTLQAHRRNHTGEKPFKCTVCDHACSQSAKLKKHMKIH 142
E C ++F + L H R HTG+KPF+C +C SQ L +H++ H
Sbjct: 10 ESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTH 57
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 26/54 (48%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKPFKCTVCDHACSQSAKLKKHMKIH 142
+K +C C + F L H R HTGEKPF C +C + +H KIH
Sbjct: 32 QKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFACDICGRKFATLHTRDRHTKIH 85
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 44/124 (35%), Gaps = 40/124 (32%)
Query: 117 EKPFKCTV--CDHACSQSAKLKKHMKIHXXXXXXXXXXXXPXXXXXXXXXXXXXXNLCLP 174
E+P+ C V CD SQ L H++IH
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHT------------------------------- 30
Query: 175 NSHMKKESRRNDTCEFCGKVFKNCSNLTVHRRSHTGEKPYKCELCSYACAQSSKLTRHMK 234
++ C C + F + L H R+HTGEKP+ C++C A RH K
Sbjct: 31 -------GQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFACDICGRKFATLHTRDRHTK 83
Query: 235 THGR 238
H R
Sbjct: 84 IHLR 87
Score = 34.7 bits (78), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 211 EKPYKC--ELCSYACAQSSKLTRHMKTHGRLGKDVYRCRFCEMPFSVPSTLEKHMR 264
E+PY C E C +Q + L H++ H G+ ++CR C FS + L +H+R
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIH--TGQKPFQCRICMRNFSQHTGLNQHIR 55
>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse
Protein Odd-Skipped-Related 2 Splicing Isoform 2
Length = 106
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Query: 181 ESRRNDTCEFCGKVFKNCSNLTVHRRSHTGEKPYKCELCSYACAQSSKLTRHMKTHGRLG 240
++++ C+FCG+ F NL +H R+HT E+PY C++C A + L H H +
Sbjct: 13 KTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSK-- 70
Query: 241 KDVYRCRFCEMPFSVPSTLEKH 262
+ ++C+ C F TL H
Sbjct: 71 EKPFKCQECGKGFCQSRTLAVH 92
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 30/57 (52%)
Query: 86 SQEEKNKECEFCGKKFKYENTLQAHRRNHTGEKPFKCTVCDHACSQSAKLKKHMKIH 142
S+ +K C+FCG+ F L H R HT E+P+ C +C A + L+ H IH
Sbjct: 12 SKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIH 68
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 31/58 (53%)
Query: 85 TSQEEKNKECEFCGKKFKYENTLQAHRRNHTGEKPFKCTVCDHACSQSAKLKKHMKIH 142
T +E+ C+ C K F+ ++ L+ HR H+ EKPFKC C QS L H +H
Sbjct: 39 THTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVHKTLH 96
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 27/53 (50%)
Query: 184 RNDTCEFCGKVFKNCSNLTVHRRSHTGEKPYKCELCSYACAQSSKLTRHMKTH 236
R TC+ C K F+ +L HR H+ EKP+KC+ C QS L H H
Sbjct: 44 RPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVHKTLH 96
>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens,
Northeast Structural Genomics Consortium
Length = 74
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 34/54 (62%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKPFKCTVCDHACSQSAKLKKHMKIH 142
+K +C+ C F+Y+ L +H+ HTGEKP++C +C ++ A LK H +IH
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIH 68
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 26/49 (53%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKPYKCELCSYACAQSSKLTRHMKTH 236
C+ C F+ NL H+ HTGEKPY+C +C + + L H + H
Sbjct: 20 CDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIH 68
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 211 EKPYKCELCSYACAQSSKLTRHMKTHGRLGKDVYRCRFCEMPFSVPSTLEKHMR 264
+KPYKC+ C + L H H G+ YRC C F+ P+ L+ H R
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVH--TGEKPYRCNICGAQFNRPANLKTHTR 66
Score = 32.0 bits (71), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 18/36 (50%)
Query: 84 TTSQEEKNKECEFCGKKFKYENTLQAHRRNHTGEKP 119
T EK C CG +F L+ H R H+GEKP
Sbjct: 38 TVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
Score = 31.2 bits (69), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKP 213
C CG F +NL H R H+GEKP
Sbjct: 48 CNICGAQFNRPANLKTHTRIHSGEKP 73
>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex
pdb|1A1L|A Chain A, Zif268 Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 51/124 (41%), Gaps = 40/124 (32%)
Query: 117 EKPFKCTV--CDHACSQSAKLKKHMKIHXXXXXXXXXXXXPXXXXXXXXXXXXXXNLCLP 174
E+P+ C V CD S+S +L +H++IH
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHT------------------------------- 30
Query: 175 NSHMKKESRRNDTCEFCGKVFKNCSNLTVHRRSHTGEKPYKCELCSYACAQSSKLTRHMK 234
++ C C + F +LT H R+HTGEKP+ C++C A+S + RH K
Sbjct: 31 -------GQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTK 83
Query: 235 THGR 238
H R
Sbjct: 84 IHLR 87
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Query: 189 EFCGKVFKNCSNLTVHRRSHTGEKPYKCELCSYACAQSSKLTRHMKTHGRLGKDVYRCRF 248
E C + F LT H R HTG+KP++C +C ++S LT H++TH G+ + C
Sbjct: 10 ESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH--TGEKPFACDI 67
Query: 249 CEMPFSVPSTLEKH 262
C F+ ++H
Sbjct: 68 CGRKFARSDERKRH 81
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 31/54 (57%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKPFKCTVCDHACSQSAKLKKHMKIH 142
+K +C C + F + L H R HTGEKPF C +C ++S + K+H KIH
Sbjct: 32 QKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 28/48 (58%)
Query: 95 EFCGKKFKYENTLQAHRRNHTGEKPFKCTVCDHACSQSAKLKKHMKIH 142
E C ++F + L H R HTG+KPF+C +C S+S L H++ H
Sbjct: 10 ESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 57
>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
pdb|1G2F|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
Length = 90
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 189 EFCGKVFKNCSNLTVHRRSHTGEKPYKCELCSYACAQSSKLTRHMKTHGRLGKDVYRCRF 248
E C + F +NL H R HTG+KP++C +C +Q + L H++TH G+ + C
Sbjct: 10 ESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTH--TGEKPFACDI 67
Query: 249 CEMPFSVPSTLEKHMR 264
C F+ T +H +
Sbjct: 68 CGRKFATLHTRTRHTK 83
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 29/54 (53%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKPFKCTVCDHACSQSAKLKKHMKIH 142
+K +C C + F + +L AH R HTGEKPF C +C + +H KIH
Sbjct: 32 QKPFQCRICMRNFSQQASLNAHIRTHTGEKPFACDICGRKFATLHTRTRHTKIH 85
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 46/124 (37%), Gaps = 40/124 (32%)
Query: 117 EKPFKCTV--CDHACSQSAKLKKHMKIHXXXXXXXXXXXXPXXXXXXXXXXXXXXNLCLP 174
E+P+ C V CD SQ L H++IH
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHT------------------------------- 30
Query: 175 NSHMKKESRRNDTCEFCGKVFKNCSNLTVHRRSHTGEKPYKCELCSYACAQSSKLTRHMK 234
++ C C + F ++L H R+HTGEKP+ C++C A TRH K
Sbjct: 31 -------GQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFACDICGRKFATLHTRTRHTK 83
Query: 235 THGR 238
H R
Sbjct: 84 IHLR 87
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 28/48 (58%)
Query: 95 EFCGKKFKYENTLQAHRRNHTGEKPFKCTVCDHACSQSAKLKKHMKIH 142
E C ++F + L H R HTG+KPF+C +C SQ A L H++ H
Sbjct: 10 ESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTH 57
Score = 35.0 bits (79), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 211 EKPYKC--ELCSYACAQSSKLTRHMKTHGRLGKDVYRCRFCEMPFSVPSTLEKHMR 264
E+PY C E C +Q + L H++ H G+ ++CR C FS ++L H+R
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIH--TGQKPFQCRICMRNFSQQASLNAHIR 55
>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
pdb|1P47|B Chain B, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
Length = 87
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 51/124 (41%), Gaps = 40/124 (32%)
Query: 117 EKPFKCTV--CDHACSQSAKLKKHMKIHXXXXXXXXXXXXPXXXXXXXXXXXXXXNLCLP 174
E+P+ C V CD S+S +L +H++IH
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRHIRIHT------------------------------- 29
Query: 175 NSHMKKESRRNDTCEFCGKVFKNCSNLTVHRRSHTGEKPYKCELCSYACAQSSKLTRHMK 234
++ C C + F +LT H R+HTGEKP+ C++C A+S + RH K
Sbjct: 30 -------GQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTK 82
Query: 235 THGR 238
H R
Sbjct: 83 IHLR 86
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 31/54 (57%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKPFKCTVCDHACSQSAKLKKHMKIH 142
+K +C C + F + L H R HTGEKPF C +C ++S + K+H KIH
Sbjct: 31 QKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 84
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Query: 189 EFCGKVFKNCSNLTVHRRSHTGEKPYKCELCSYACAQSSKLTRHMKTHGRLGKDVYRCRF 248
E C + F LT H R HTG+KP++C +C ++S LT H++TH G+ + C
Sbjct: 9 ESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH--TGEKPFACDI 66
Query: 249 CEMPFSVPSTLEKH 262
C F+ ++H
Sbjct: 67 CGRKFARSDERKRH 80
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 28/48 (58%)
Query: 95 EFCGKKFKYENTLQAHRRNHTGEKPFKCTVCDHACSQSAKLKKHMKIH 142
E C ++F + L H R HTG+KPF+C +C S+S L H++ H
Sbjct: 9 ESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 56
>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna
Length = 82
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKPYKCELCSYACAQSSKLTRHMKTHGRLGKDVYRCR 247
C+ CGK FK S L+ H H+ +PY C+ C Q S + +H H G+ ++C+
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIH--TGEKPHKCQ 61
Query: 248 FCEMPFSVPSTLEKHMRK 265
C FS S L H RK
Sbjct: 62 VCGKAFSQSSNLITHSRK 79
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 32/49 (65%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKPYKCELCSYACAQSSKLTRHMKTH 236
C++CGK F S++ H HTGEKP+KC++C A +QSS L H + H
Sbjct: 32 CQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRKH 80
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 32/49 (65%)
Query: 94 CEFCGKKFKYENTLQAHRRNHTGEKPFKCTVCDHACSQSAKLKKHMKIH 142
C++CGK+F ++ ++ H HTGEKP KC VC A SQS+ L H + H
Sbjct: 32 CQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRKH 80
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 42/118 (35%), Gaps = 38/118 (32%)
Query: 93 ECEFCGKKFKYENTLQAHRRNHTGEKPFKCTVCDHACSQSAKLKKHMKIHXXXXXXXXXX 152
+C+ CGK FK +TL H H+ +P+ C C Q + +KKH IH
Sbjct: 3 DCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHT--------- 53
Query: 153 XXPXXXXXXXXXXXXXXNLCLPNSHMKKESRRNDTCEFCGKVFKNCSNLTVHRRSHTG 210
+ C+ CGK F SNL H R HTG
Sbjct: 54 -----------------------------GEKPHKCQVCGKAFSQSSNLITHSRKHTG 82
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTG 116
EK +C+ CGK F + L H R HTG
Sbjct: 55 EKPHKCQVCGKAFSQSSNLITHSRKHTG 82
>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A
Zif268- Dna Complex At 2.1 Angstroms
Length = 87
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 51/124 (41%), Gaps = 40/124 (32%)
Query: 117 EKPFKCTV--CDHACSQSAKLKKHMKIHXXXXXXXXXXXXPXXXXXXXXXXXXXXNLCLP 174
E+P+ C V CD S+S +L +H++IH
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHT------------------------------- 30
Query: 175 NSHMKKESRRNDTCEFCGKVFKNCSNLTVHRRSHTGEKPYKCELCSYACAQSSKLTRHMK 234
++ C C + F +LT H R+HTGEKP+ C++C A+S + RH K
Sbjct: 31 -------GQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTK 83
Query: 235 THGR 238
H R
Sbjct: 84 IHLR 87
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 31/54 (57%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKPFKCTVCDHACSQSAKLKKHMKIH 142
+K +C C + F + L H R HTGEKPF C +C ++S + K+H KIH
Sbjct: 32 QKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Query: 189 EFCGKVFKNCSNLTVHRRSHTGEKPYKCELCSYACAQSSKLTRHMKTHGRLGKDVYRCRF 248
E C + F LT H R HTG+KP++C +C ++S LT H++TH G+ + C
Sbjct: 10 ESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH--TGEKPFACDI 67
Query: 249 CEMPFSVPSTLEKH 262
C F+ ++H
Sbjct: 68 CGRKFARSDERKRH 81
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 28/48 (58%)
Query: 95 EFCGKKFKYENTLQAHRRNHTGEKPFKCTVCDHACSQSAKLKKHMKIH 142
E C ++F + L H R HTG+KPF+C +C S+S L H++ H
Sbjct: 10 ESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 57
>pdb|4GZN|C Chain C, Mouse Zfp57 Zinc Fingers In Complex With Methylated Dna
Length = 60
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 31/55 (56%)
Query: 182 SRRNDTCEFCGKVFKNCSNLTVHRRSHTGEKPYKCELCSYACAQSSKLTRHMKTH 236
S R C FCGK +++ S L+ HRR+H G +P C C S++ RH+K H
Sbjct: 1 SERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVH 55
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 27/49 (55%)
Query: 94 CEFCGKKFKYENTLQAHRRNHTGEKPFKCTVCDHACSQSAKLKKHMKIH 142
C FCGK ++ + L HRR H G +P C C +++ +H+K+H
Sbjct: 7 CNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVH 55
>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound
To The Adeno-Associated Virus P5 Initiator Element
Length = 124
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 43/91 (47%), Gaps = 6/91 (6%)
Query: 177 HMKKESRRNDTCEFCGKVFKNCSNLTVHRRSHTGEKPYKCELCSYACAQSSKLTRHMKTH 236
H+ R C CGK F S L H+ HTGEKP++C C + L +++TH
Sbjct: 26 HLHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTF--EGCGKRFSLDFNLRTH 83
Query: 237 GRL--GKDVYRCRF--CEMPFSVPSTLEKHM 263
R+ G Y C F C F+ + L+ H+
Sbjct: 84 VRIHTGDRPYVCPFDGCNKKFAQSTNLKSHI 114
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 55/144 (38%), Gaps = 39/144 (27%)
Query: 97 CGKKFKYENTLQAHRRNHTGEKPFKCTVCDHACSQSAKLKKHMKIHXXXXXXXXXXXXPX 156
C K F+ + ++ H H G + C C A +S+KLK+H +H
Sbjct: 13 CTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTG------------ 59
Query: 157 XXXXXXXXXXXXXNLCLPNSHMKKESRRNDTCEFCGKVFKNCSNLTVHRRSHTGEKPYKC 216
E T E CGK F NL H R HTG++PY C
Sbjct: 60 ------------------------EKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVC 95
Query: 217 EL--CSYACAQSSKLTRHMKTHGR 238
C+ AQS+ L H+ TH +
Sbjct: 96 PFDGCNKKFAQSTNLKSHILTHAK 119
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 4/58 (6%)
Query: 89 EKNKECEF--CGKKFKYENTLQAHRRNHTGEKPFKCTV--CDHACSQSAKLKKHMKIH 142
EK +C F CGK+F + L+ H R HTG++P+ C C+ +QS LK H+ H
Sbjct: 60 EKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 117
Score = 41.2 bits (95), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 94 CEFCGKKFKYENTLQAHRRNHTGEKPFKCTV--CDHACSQSAKLKKHMKIH 142
C CGK F + L+ H+ HTGEKPF+CT C S L+ H++IH
Sbjct: 37 CAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIH 87
>pdb|2GLI|A Chain A, Five-Finger GliDNA COMPLEX
Length = 155
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 43/81 (53%), Gaps = 3/81 (3%)
Query: 187 TCEFCGKVFKNCSNLTVHRRSHTGEKPYKC--ELCSYACAQSSKLTRHM-KTHGRLGKDV 243
T E C K + NL H RSHTGEKPY C E CS A + +S +H +TH V
Sbjct: 71 TFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYV 130
Query: 244 YRCRFCEMPFSVPSTLEKHMR 264
+ C ++ PS+L KH++
Sbjct: 131 CKLPGCTKRYTDPSSLRKHVK 151
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 62/161 (38%), Gaps = 47/161 (29%)
Query: 88 EEKNKECEFCG-----KKFKYENTLQAHRRNHTGEKPFKCTV--CDHACSQSAKLKKHMK 140
E K C + G + FK + L H R HTGEKP KCT C + S+ LK H++
Sbjct: 31 ERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLR 90
Query: 141 IHXXXXXXXXXXXXPXXXXXXXXXXXXXXNLCLPNSHMKKESRRNDTCEFCGKVFKNCSN 200
H E C K F N S+
Sbjct: 91 SHTGEKPYMCEH------------------------------------EGCSKAFSNASD 114
Query: 201 LTVHR-RSHTGEKPYKCEL--CSYACAQSSKLTRHMKT-HG 237
H+ R+H+ EKPY C+L C+ S L +H+KT HG
Sbjct: 115 RAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVHG 155
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 45/97 (46%), Gaps = 11/97 (11%)
Query: 183 RRNDTCEFCG-----KVFKNCSNLTVHRRSHTGEKPYKC--ELCSYACAQSSKLTRHMKT 235
R+ C + G + FK L VH R HTGEKP+KC E C + ++ L H+++
Sbjct: 32 RKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRS 91
Query: 236 HGRLGKDVYRCRF--CEMPFSVPSTLEKHMRKCVVNQ 270
H G+ Y C C FS S KH + N+
Sbjct: 92 H--TGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNE 126
>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
pdb|1LLM|D Chain D, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
Length = 88
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 27/45 (60%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKPYKCELCSYACAQSSKLTRH 232
C C + F +LT H R+HTGEKP+ C++C A+S + RH
Sbjct: 6 CRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 50
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 27/49 (55%)
Query: 93 ECEFCGKKFKYENTLQAHRRNHTGEKPFKCTVCDHACSQSAKLKKHMKI 141
+C C + F + L H R HTGEKPF C +C ++S + K+H I
Sbjct: 5 QCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDI 53
Score = 32.0 bits (71), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 212 KPYKCELCSYACAQSSKLTRHMKTHGRLGKDVYRCRFCEMPFSVPSTLEKH 262
KP++C +C ++S LT H++TH G+ + C C F+ ++H
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHT--GEKPFACDICGRKFARSDERKRH 50
>pdb|2EPA|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domains
From Human Krueppel-Like Factor 10
Length = 72
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Query: 191 CGKVFKNCSNLTVHRRSHTGEKPYKCEL--CSYACAQSSKLTRHMKTH 236
CGK + S+L H R+HTGEKP+ C C A+S +L+RH +TH
Sbjct: 25 CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Query: 97 CGKKFKYENTLQAHRRNHTGEKPFKCTV--CDHACSQSAKLKKHMKIH 142
CGK + + L+AH R HTGEKPF C+ C+ ++S +L +H + H
Sbjct: 25 CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
>pdb|1F2I|G Chain G, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|H Chain H, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|I Chain I, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|J Chain J, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|K Chain K, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|L Chain L, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
Length = 73
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 29/48 (60%)
Query: 189 EFCGKVFKNCSNLTVHRRSHTGEKPYKCELCSYACAQSSKLTRHMKTH 236
E C + F LT H R HTG+KP++C +C ++S LT H++TH
Sbjct: 25 ESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 28/48 (58%)
Query: 95 EFCGKKFKYENTLQAHRRNHTGEKPFKCTVCDHACSQSAKLKKHMKIH 142
E C ++F + L H R HTG+KPF+C +C S+S L H++ H
Sbjct: 25 ESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 35.8 bits (81), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
Query: 212 KPYKC--ELCSYACAQSSKLTRHMKTHGRLGKDVYRCRFCEMPFSVPSTLEKHMR 264
+PY C E C ++S +LTRH++ H G+ ++CR C FS L H+R
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHIRIHT--GQKPFQCRICMRNFSRSDHLTTHIR 70
>pdb|1TF6|A Chain A, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
pdb|1TF6|D Chain D, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
Length = 190
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 58/156 (37%), Gaps = 22/156 (14%)
Query: 94 CEF--CGKKFKYENTLQAHRRNHTGEKPFKCT--VCDHACSQSAKLKKHMKIHXXXXXXX 149
C F CG + LQAH HTGEKPF C C+ + L +H H
Sbjct: 15 CSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFT 74
Query: 150 XXXXXPXXXXXXXXXXXXXXN------LCLPNSHMKKESRRNDTCEFCGKVFKNCSNLTV 203
N +C+ H E CGK FK + L V
Sbjct: 75 CDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHF----------ENCGKAFKKHNQLKV 124
Query: 204 HRRSHTGEKPYKC--ELCSYACAQSSKLTRHMKTHG 237
H+ SHT + PY+C E C + S+L RH K H
Sbjct: 125 HQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHA 160
Score = 35.8 bits (81), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 8/84 (9%)
Query: 188 CEF--CGKVFKNCSNLTVHRRSHTGEKPYKC--ELCSYACAQSSKLTRHMKTHGRLGKDV 243
C F CG + L H HTGEKP+ C E C LTRH TH G+
Sbjct: 15 CSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTH--TGEKN 72
Query: 244 YRC--RFCEMPFSVPSTLEKHMRK 265
+ C C++ F+ + ++KH +
Sbjct: 73 FTCDSDGCDLRFTTKANMKKHFNR 96
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 4/78 (5%)
Query: 189 EFCGKVFKNCSNLTVHRRSHTGEKPYKCEL--CSYACAQSSKLTRHMKTHGRLGKDVYRC 246
E C K F + +LT H +HTGEK + C+ C + + +H + VY C
Sbjct: 48 EGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVC 107
Query: 247 RF--CEMPFSVPSTLEKH 262
F C F + L+ H
Sbjct: 108 HFENCGKAFKKHNQLKVH 125
>pdb|2ADR|A Chain A, Adr1 Dna-Binding Domain From Saccharomyces Cerevisiae,
Nmr, 25 Structures
Length = 60
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 187 TCEFCGKVFKNCSNLTVHRRSHTGEKPYKCELCSYACAQSSKLTRHM-KTH-GRLGK 241
CE C + F +L H RSHT EKPY C LC+ A + L RH K H G LG+
Sbjct: 4 VCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGNLGE 60
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 94 CEFCGKKFKYENTLQAHRRNHTGEKPFKCTVCDHACSQSAKLKKHM-KIH 142
CE C + F + L+ H R+HT EKP+ C +C+ A ++ L +H KIH
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIH 54
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 214 YKCELCSYACAQSSKLTRHMKTHGRLGKDVYRCRFCEMPFSVPSTLEKHMRK 265
+ CE+C+ A A+ L RH ++H + Y C C F+ L +H +K
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSH--TNEKPYPCGLCNRAFTRRDLLIRHAQK 52
>pdb|2EPR|A Chain A, Solution Structure Of The Secound Zinc Finger Domain Of
Zinc Finger Protein 278
Length = 48
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 24/34 (70%)
Query: 181 ESRRNDTCEFCGKVFKNCSNLTVHRRSHTGEKPY 214
+R+ CE CGK+F++ +L H+ SH+GEKPY
Sbjct: 8 RTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPY 41
Score = 34.3 bits (77), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 83 STTSQEEKNKECEFCGKKFKYENTLQAHRRNHTGEKPF 120
++ + K CE CGK F+ L H+ +H+GEKP+
Sbjct: 4 GSSGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPY 41
>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2 Domains
Of Human Zinc Finger Protein 297b
Length = 110
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 30/77 (38%), Gaps = 2/77 (2%)
Query: 191 CGKVFKNCSNLTVHRRSHTGEKPYKCELCSYACAQSSKLTRHMKTHGRLGKDVYRCRFCE 250
CGK F + S H H G +PY C +C L HMK H G Y C C
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH--TGIKPYECNICA 72
Query: 251 MPFSVPSTLEKHMRKCV 267
F + +H+ C
Sbjct: 73 KRFMWRDSFHRHVTSCT 89
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 22/32 (68%)
Query: 94 CEFCGKKFKYENTLQAHRRNHTGEKPFKCTVC 125
C CGKKFK ++ L H + HTG KP++C +C
Sbjct: 40 CGVCGKKFKMKHHLVGHMKIHTGIKPYECNIC 71
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 25/50 (50%)
Query: 184 RNDTCEFCGKVFKNCSNLTVHRRSHTGEKPYKCELCSYACAQSSKLTRHM 233
R C CGK FK +L H + HTG KPY+C +C+ RH+
Sbjct: 36 RPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSFHRHV 85
Score = 35.8 bits (81), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 83 STTSQEEKNKECEFCGKKFKYENTLQAHRRNHTGEKPFKCTVCDHACSQSAKLKKHMKIH 142
S+ S +K C+ CGK F +++ H H G +P+ C VC L HMKIH
Sbjct: 2 SSGSSGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH 60
>pdb|1UN6|B Chain B, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|1UN6|C Chain C, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|1UN6|D Chain D, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|2HGH|A Chain A, Transcription Factor Iiia Zinc Fingers 4-6 Bound To 5s
Rrna 55mer (Nmr Structure)
Length = 87
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
Query: 187 TCEF--CGKVFKNCSNLTVHRRSHTGEKPYKC--ELCSYACAQSSKLTRHMKTHG 237
C F CGK FK + L VH+ SHT + PY+C E C + S+L RH K H
Sbjct: 3 VCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHA 57
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 32/53 (60%), Gaps = 4/53 (7%)
Query: 94 CEF--CGKKFKYENTLQAHRRNHTGEKPFKC--TVCDHACSQSAKLKKHMKIH 142
C F CGK FK N L+ H+ +HT + P++C CD S ++LK+H K+H
Sbjct: 4 CHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVH 56
>pdb|2EM4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
724- 756) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 21/31 (67%)
Query: 183 RRNDTCEFCGKVFKNCSNLTVHRRSHTGEKP 213
+R C CGK FK S+L HRRSHTGEKP
Sbjct: 10 QRPYECIECGKAFKTKSSLICHRRSHTGEKP 40
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/27 (62%), Positives = 21/27 (77%)
Query: 93 ECEFCGKKFKYENTLQAHRRNHTGEKP 119
EC CGK FK +++L HRR+HTGEKP
Sbjct: 14 ECIECGKAFKTKSSLICHRRSHTGEKP 40
>pdb|2EOR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
255- 287) Of Human Zinc Finger Protein 224
Length = 46
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 22/31 (70%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKP 119
EK CE CGK F +++ LQ H+R HTGEKP
Sbjct: 10 EKPYNCEECGKAFIHDSQLQEHQRIHTGEKP 40
Score = 35.4 bits (80), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 16/26 (61%), Positives = 18/26 (69%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKP 213
CE CGK F + S L H+R HTGEKP
Sbjct: 15 CEECGKAFIHDSQLQEHQRIHTGEKP 40
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 211 EKPYKCELCSYACAQSSKLTRHMKTH 236
EKPY CE C A S+L H + H
Sbjct: 10 EKPYNCEECGKAFIHDSQLQEHQRIH 35
>pdb|1BBO|A Chain A, High-Resolution Solution Structure Of The Double Cys2His2
Zinc Finger From The Human Enhancer Binding Protein
Mbp-1
Length = 57
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 27/48 (56%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKPYKCELCSYACAQSSKLTRHMKT 235
CE CG K S L H R+HT +PY C C+++ LT+HMK+
Sbjct: 4 CEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKS 51
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 26/47 (55%)
Query: 94 CEFCGKKFKYENTLQAHRRNHTGEKPFKCTVCDHACSQSAKLKKHMK 140
CE CG + K + L+ H R HT +P+ CT C+ + L KHMK
Sbjct: 4 CEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 6/53 (11%)
Query: 214 YKCELCSYACAQSSKLTRHMKTHGRLGKDV--YRCRFCEMPFSVPSTLEKHMR 264
Y CE C + S L +H++TH DV Y C +C F L KHM+
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHT----DVRPYHCTYCNFSFKTKGNLTKHMK 50
>pdb|2J7J|A Chain A, Invariance Of The Zinc Finger Module: A Comparison Of The
Free Structure With Those In Nucleic-Acid Complexes
Length = 85
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
Query: 187 TCEF--CGKVFKNCSNLTVHRRSHTGEKPYKC--ELCSYACAQSSKLTRHMKTHG 237
C F CGK FK + L VH+ SHT + PY+C E C + S+L RH K H
Sbjct: 3 VCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHA 57
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 32/53 (60%), Gaps = 4/53 (7%)
Query: 94 CEF--CGKKFKYENTLQAHRRNHTGEKPFKC--TVCDHACSQSAKLKKHMKIH 142
C F CGK FK N L+ H+ +HT + P++C CD S ++LK+H K+H
Sbjct: 4 CHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVH 56
>pdb|1TF3|A Chain A, Tfiiia Finger 1-3 Bound To Dna, Nmr, 22 Structures
Length = 92
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 8/84 (9%)
Query: 188 CEF--CGKVFKNCSNLTVHRRSHTGEKPYKC--ELCSYACAQSSKLTRHMKTHGRLGKDV 243
C F CG + L H HTGEKP+ C E C LTRH TH G+
Sbjct: 6 CSFADCGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTH--TGEKN 63
Query: 244 YRC--RFCEMPFSVPSTLEKHMRK 265
+ C C++ F+ + ++KH +
Sbjct: 64 FTCDSDGCDLRFTTKANMKKHFNR 87
Score = 32.0 bits (71), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 94 CEF--CGKKFKYENTLQAHRRNHTGEKPFKC 122
C F CG + LQAH HTGEKPF C
Sbjct: 6 CSFADCGAAYNKNWKLQAHLSKHTGEKPFPC 36
Score = 27.7 bits (60), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Query: 95 EFCGKKFKYENTLQAHRRNHTGEKPFKCTV--CDHACSQSAKLKKHM 139
E C K F + L H HTGEK F C CD + A +KKH
Sbjct: 39 EGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHF 85
>pdb|2EP0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
528- 560) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKP 119
EK +C+ C K F+Y ++L H+R HTGEKP
Sbjct: 10 EKPYKCDVCHKSFRYGSSLTVHQRIHTGEKP 40
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 16/26 (61%), Positives = 20/26 (76%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKP 213
C+ C K F+ S+LTVH+R HTGEKP
Sbjct: 15 CDVCHKSFRYGSSLTVHQRIHTGEKP 40
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 211 EKPYKCELCSYACAQSSKLTRHMKTH 236
EKPYKC++C + S LT H + H
Sbjct: 10 EKPYKCDVCHKSFRYGSSLTVHQRIH 35
>pdb|2EM6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
199- 231) Of Human Zinc Finger Protein 224
Length = 46
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKP 119
EK +C+ CGK+F + LQ H+R HTGEKP
Sbjct: 10 EKCYKCDVCGKEFSQSSHLQTHQRVHTGEKP 40
Score = 36.2 bits (82), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 18/26 (69%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKP 213
C+ CGK F S+L H+R HTGEKP
Sbjct: 15 CDVCGKEFSQSSHLQTHQRVHTGEKP 40
Score = 28.1 bits (61), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 117 EKPFKCTVCDHACSQSAKLKKHMKIH 142
EK +KC VC SQS+ L+ H ++H
Sbjct: 10 EKCYKCDVCGKEFSQSSHLQTHQRVH 35
>pdb|1X5W|A Chain A, Solution Structure Of The C2h2 Type Zinc-Binding Domain Of
Human Zinc Finger Protein 64, Isoforms 1 And 2
Length = 70
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 201 LTVHRRSHTGEKPYKCELCSYACAQSSKLTRHMKT-HGRL 239
L +H R H ++P+KC CS+ Q S L++HMK HG +
Sbjct: 25 LRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGDM 64
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 19/35 (54%)
Query: 106 TLQAHRRNHTGEKPFKCTVCDHACSQSAKLKKHMK 140
L+ H R H ++PFKC C Q + L KHMK
Sbjct: 24 ALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMK 58
>pdb|2YTP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
687- 719) Of Human Zinc Finger Protein 484
Length = 46
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKP 119
E++ EC CGK F ++TL H+R HTGEKP
Sbjct: 10 ERHYECSECGKAFARKSTLIMHQRIHTGEKP 40
Score = 35.8 bits (81), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 19/30 (63%)
Query: 184 RNDTCEFCGKVFKNCSNLTVHRRSHTGEKP 213
R+ C CGK F S L +H+R HTGEKP
Sbjct: 11 RHYECSECGKAFARKSTLIMHQRIHTGEKP 40
>pdb|2EOM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
341- 373) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 17/30 (56%)
Query: 184 RNDTCEFCGKVFKNCSNLTVHRRSHTGEKP 213
R C CGK F SN HRR HTGEKP
Sbjct: 11 RGHRCSDCGKFFLQASNFIQHRRIHTGEKP 40
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 17/31 (54%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKP 119
E+ C CGK F + HRR HTGEKP
Sbjct: 10 ERGHRCSDCGKFFLQASNFIQHRRIHTGEKP 40
>pdb|2EML|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
752- 784) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKP 119
EK EC CGK F + +L H+R H+G+KP
Sbjct: 10 EKPYECSVCGKAFSHRQSLSVHQRIHSGKKP 40
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 19/26 (73%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKP 213
C CGK F + +L+VH+R H+G+KP
Sbjct: 15 CSVCGKAFSHRQSLSVHQRIHSGKKP 40
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 117 EKPFKCTVCDHACSQSAKLKKHMKIH 142
EKP++C+VC A S L H +IH
Sbjct: 10 EKPYECSVCGKAFSHRQSLSVHQRIH 35
>pdb|2EN6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
887- 919) Of Human Zinc Finger Protein 268
Length = 46
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 20/31 (64%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKP 119
EK C CGK F ++ L AH+R HTGEKP
Sbjct: 10 EKPYGCNECGKTFSQKSILSAHQRTHTGEKP 40
Score = 35.0 bits (79), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 18/26 (69%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKP 213
C CGK F S L+ H+R+HTGEKP
Sbjct: 15 CNECGKTFSQKSILSAHQRTHTGEKP 40
Score = 28.1 bits (61), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 211 EKPYKCELCSYACAQSSKLTRHMKTH 236
EKPY C C +Q S L+ H +TH
Sbjct: 10 EKPYGCNECGKTFSQKSILSAHQRTH 35
>pdb|2EOG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
693- 723) Of Human Zinc Finger Protein 268
Length = 44
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 19/26 (73%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKP 213
C CGK F++ S L +H R+HTGEKP
Sbjct: 13 CSECGKAFRSKSYLIIHMRTHTGEKP 38
Score = 35.0 bits (79), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 21/37 (56%)
Query: 83 STTSQEEKNKECEFCGKKFKYENTLQAHRRNHTGEKP 119
S+ S K C CGK F+ ++ L H R HTGEKP
Sbjct: 2 SSGSSGVKPYGCSECGKAFRSKSYLIIHMRTHTGEKP 38
Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 209 TGEKPYKCELCSYACAQSSKLTRHMKTH 236
+G KPY C C A S L HM+TH
Sbjct: 6 SGVKPYGCSECGKAFRSKSYLIIHMRTH 33
>pdb|2YTH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
479- 511) Of Human Zinc Finger Protein 224
Length = 46
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKP 119
EK +CE CGK+F + L +H+R HTGEKP
Sbjct: 10 EKPFQCEECGKRFTQNSHLHSHQRVHTGEKP 40
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/26 (61%), Positives = 18/26 (69%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKP 213
CE CGK F S+L H+R HTGEKP
Sbjct: 15 CEECGKRFTQNSHLHSHQRVHTGEKP 40
>pdb|2EMJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
612- 644) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 19/31 (61%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKP 119
EK EC CGK F + L H+R HTGEKP
Sbjct: 10 EKPFECAECGKSFSISSQLATHQRIHTGEKP 40
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 16/26 (61%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKP 213
C CGK F S L H+R HTGEKP
Sbjct: 15 CAECGKSFSISSQLATHQRIHTGEKP 40
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 117 EKPFKCTVCDHACSQSAKLKKHMKIH 142
EKPF+C C + S S++L H +IH
Sbjct: 10 EKPFECAECGKSFSISSQLATHQRIH 35
>pdb|2YRJ|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(781- 813) From Zinc Finger Protein 473
Length = 46
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 16/26 (61%), Positives = 18/26 (69%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKP 213
C CGK F +NLT H+R HTGEKP
Sbjct: 15 CGECGKAFAQKANLTQHQRIHTGEKP 40
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 18/31 (58%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKP 119
EK C CGK F + L H+R HTGEKP
Sbjct: 10 EKPYRCGECGKAFAQKANLTQHQRIHTGEKP 40
Score = 32.3 bits (72), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 211 EKPYKCELCSYACAQSSKLTRHMKTH 236
EKPY+C C A AQ + LT+H + H
Sbjct: 10 EKPYRCGECGKAFAQKANLTQHQRIH 35
Score = 31.6 bits (70), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 117 EKPFKCTVCDHACSQSAKLKKHMKIH 142
EKP++C C A +Q A L +H +IH
Sbjct: 10 EKPYRCGECGKAFAQKANLTQHQRIH 35
>pdb|2EOS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
626- 654) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKP 119
EK CE CG +F++ TL++H R HTG P
Sbjct: 9 EKPYPCEICGTRFRHLQTLKSHLRIHTGSGP 39
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKP 213
CE CG F++ L H R HTG P
Sbjct: 14 CEICGTRFRHLQTLKSHLRIHTGSGP 39
>pdb|2EN1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
563- 595) Of Human Zinc Finger Protein 224
Length = 46
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKP 119
EK +CE CGK+F + L +H+R HTGEKP
Sbjct: 10 EKPFKCEECGKRFTQNSQLHSHQRVHTGEKP 40
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/26 (61%), Positives = 17/26 (65%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKP 213
CE CGK F S L H+R HTGEKP
Sbjct: 15 CEECGKRFTQNSQLHSHQRVHTGEKP 40
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 117 EKPFKCTVCDHACSQSAKLKKHMKIH 142
EKPFKC C +Q+++L H ++H
Sbjct: 10 EKPFKCEECGKRFTQNSQLHSHQRVH 35
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 211 EKPYKCELCSYACAQSSKLTRHMKTH 236
EKP+KCE C Q+S+L H + H
Sbjct: 10 EKPFKCEECGKRFTQNSQLHSHQRVH 35
>pdb|2EP2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
603- 635) Of Human Zinc Finger Protein 484
Length = 46
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKP 119
EK EC CGK F ++ L H++ HTGEKP
Sbjct: 10 EKPYECSICGKSFTKKSQLHVHQQIHTGEKP 40
Score = 34.3 bits (77), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 17/26 (65%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKP 213
C CGK F S L VH++ HTGEKP
Sbjct: 15 CSICGKSFTKKSQLHVHQQIHTGEKP 40
>pdb|2ELS|A Chain A, Solution Structure Of The 2nd C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 36.2 bits (82), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 15/25 (60%), Positives = 20/25 (80%)
Query: 94 CEFCGKKFKYENTLQAHRRNHTGEK 118
CE+C K FK++++LQAH R HT EK
Sbjct: 12 CEYCNKVFKFKHSLQAHLRIHTNEK 36
Score = 31.6 bits (70), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 17/26 (65%)
Query: 187 TCEFCGKVFKNCSNLTVHRRSHTGEK 212
TCE+C KVFK +L H R HT EK
Sbjct: 11 TCEYCNKVFKFKHSLQAHLRIHTNEK 36
>pdb|2YTF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
607- 639) Of Human Zinc Finger Protein 268
Length = 46
Score = 36.2 bits (82), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 16/26 (61%), Positives = 18/26 (69%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKP 213
C C K F SNL VH+R+HTGEKP
Sbjct: 15 CSECQKAFNTKSNLIVHQRTHTGEKP 40
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKP 119
EK EC C K F ++ L H+R HTGEKP
Sbjct: 10 EKPFECSECQKAFNTKSNLIVHQRTHTGEKP 40
>pdb|2EMH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
491- 523) Of Human Zinc Finger Protein 484
Length = 46
Score = 36.2 bits (82), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 19/30 (63%)
Query: 184 RNDTCEFCGKVFKNCSNLTVHRRSHTGEKP 213
R C CGK F + SNL H++ HTGEKP
Sbjct: 11 RPYICTVCGKAFTDRSNLIKHQKIHTGEKP 40
Score = 31.6 bits (70), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 117 EKPFKCTVCDHACSQSAKLKKHMKIH 142
E+P+ CTVC A + + L KH KIH
Sbjct: 10 ERPYICTVCGKAFTDRSNLIKHQKIH 35
Score = 31.2 bits (69), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKP 119
E+ C CGK F + L H++ HTGEKP
Sbjct: 10 ERPYICTVCGKAFTDRSNLIKHQKIHTGEKP 40
Score = 28.1 bits (61), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 211 EKPYKCELCSYACAQSSKLTRHMKTH 236
E+PY C +C A S L +H K H
Sbjct: 10 ERPYICTVCGKAFTDRSNLIKHQKIH 35
>pdb|2EMG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
463- 495) Of Human Zinc Finger Protein 484
Length = 46
Score = 36.2 bits (82), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 20/26 (76%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKP 213
C CGKVF + +NL +H++ HTGE+P
Sbjct: 15 CSECGKVFTHKTNLIIHQKIHTGERP 40
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 94 CEFCGKKFKYENTLQAHRRNHTGEKP 119
C CGK F ++ L H++ HTGE+P
Sbjct: 15 CSECGKVFTHKTNLIIHQKIHTGERP 40
>pdb|2EOP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
719- 751) Of Human Zinc Finger Protein 268
Length = 46
Score = 35.8 bits (81), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKP 119
EK EC CGK F + + L H+R HTGE P
Sbjct: 10 EKPHECRECGKSFSFNSQLIVHQRIHTGENP 40
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 16/26 (61%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKP 213
C CGK F S L VH+R HTGE P
Sbjct: 15 CRECGKSFSFNSQLIVHQRIHTGENP 40
>pdb|2ENE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
592- 624) Of Human Zinc Finger Protein 347
Length = 46
Score = 35.8 bits (81), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 16/26 (61%), Positives = 20/26 (76%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKP 213
C CGKVF++ S L+ H+R HTGEKP
Sbjct: 15 CNECGKVFRHNSYLSRHQRIHTGEKP 40
Score = 34.7 bits (78), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKP 119
EK +C CGK F++ + L H+R HTGEKP
Sbjct: 10 EKPYKCNECGKVFRHNSYLSRHQRIHTGEKP 40
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 211 EKPYKCELCSYACAQSSKLTRHMKTH 236
EKPYKC C +S L+RH + H
Sbjct: 10 EKPYKCNECGKVFRHNSYLSRHQRIH 35
>pdb|2CT1|A Chain A, Solution Structure Of The Zinc Finger Domain Of
Transcriptional Repressor Ctcf Protein
Length = 77
Score = 35.8 bits (81), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 29/60 (48%)
Query: 206 RSHTGEKPYKCELCSYACAQSSKLTRHMKTHGRLGKDVYRCRFCEMPFSVPSTLEKHMRK 265
R+H+GEKPY+C +C QS + H+ + C C+ + S L H+RK
Sbjct: 8 RTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRK 67
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 112 RNHTGEKPFKCTVCDHACSQSAKLKKHM 139
R H+GEKP++C +C +QS +K H+
Sbjct: 8 RTHSGEKPYECYICHARFTQSGTMKMHI 35
>pdb|2YTK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
396- 428) Of Human Zinc Finger Protein 347
Length = 46
Score = 35.8 bits (81), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 18/26 (69%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKP 213
C CGKVF S+LT H R HTGEKP
Sbjct: 15 CNECGKVFTQNSHLTNHWRIHTGEKP 40
Score = 31.2 bits (69), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 18/31 (58%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKP 119
EK +C CGK F + L H R HTGEKP
Sbjct: 10 EKPYKCNECGKVFTQNSHLTNHWRIHTGEKP 40
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 211 EKPYKCELCSYACAQSSKLTRHMKTH 236
EKPYKC C Q+S LT H + H
Sbjct: 10 EKPYKCNECGKVFTQNSHLTNHWRIH 35
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 117 EKPFKCTVCDHACSQSAKLKKHMKIH 142
EKP+KC C +Q++ L H +IH
Sbjct: 10 EKPYKCNECGKVFTQNSHLTNHWRIH 35
>pdb|2EQ1|A Chain A, Solution Structure Of The 9th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 347
Length = 46
Score = 35.8 bits (81), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 16/26 (61%), Positives = 18/26 (69%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKP 213
C CGK F+ SNLT H+ HTGEKP
Sbjct: 15 CNECGKAFRAHSNLTTHQVIHTGEKP 40
Score = 32.3 bits (72), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKP 119
EK +C CGK F+ + L H+ HTGEKP
Sbjct: 10 EKPYKCNECGKAFRAHSNLTTHQVIHTGEKP 40
>pdb|2D9H|A Chain A, Solution Structure Of The Forth And Fifth Zf-C2h2 Domains
Of Zinc Finger Protein 692
Length = 78
Score = 35.4 bits (80), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 209 TGEKPYKCELCSYACAQSSKLTRHMKTHGR-LGKDVYRCRFCEMPFSVPSTLEKHMRK 265
+G +CE+C + C Q + L H + H + + C FC F P ++ H K
Sbjct: 3 SGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSK 60
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 10/18 (55%), Positives = 15/18 (83%)
Query: 94 CEFCGKKFKYENTLQAHR 111
CEFCGK+F+ +++ AHR
Sbjct: 41 CEFCGKRFEKPDSVAAHR 58
>pdb|2YTR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
760- 792) Of Human Zinc Finger Protein 347
Length = 46
Score = 35.4 bits (80), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 18/26 (69%)
Query: 211 EKPYKCELCSYACAQSSKLTRHMKTH 236
EKPYKC C A +Q+SKL RH + H
Sbjct: 10 EKPYKCNECGKAFSQTSKLARHQRIH 35
Score = 35.0 bits (79), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 19/26 (73%)
Query: 117 EKPFKCTVCDHACSQSAKLKKHMKIH 142
EKP+KC C A SQ++KL +H +IH
Sbjct: 10 EKPYKCNECGKAFSQTSKLARHQRIH 35
Score = 34.7 bits (78), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 16/26 (61%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKP 213
C CGK F S L H+R HTGEKP
Sbjct: 15 CNECGKAFSQTSKLARHQRIHTGEKP 40
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKP 119
EK +C CGK F + L H+R HTGEKP
Sbjct: 10 EKPYKCNECGKAFSQTSKLARHQRIHTGEKP 40
>pdb|2EMI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
547- 579) Of Human Zinc Finger Protein 484
Length = 46
Score = 35.4 bits (80), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKP 119
E++ EC CGK F ++TL H+R H GEKP
Sbjct: 10 ERHYECSECGKAFIQKSTLSMHQRIHRGEKP 40
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 184 RNDTCEFCGKVFKNCSNLTVHRRSHTGEKP 213
R+ C CGK F S L++H+R H GEKP
Sbjct: 11 RHYECSECGKAFIQKSTLSMHQRIHRGEKP 40
>pdb|2EN9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
415- 447) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 35.4 bits (80), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 16/26 (61%), Positives = 18/26 (69%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKP 213
C C K F S+LTVH+R HTGEKP
Sbjct: 15 CNECKKTFTQSSSLTVHQRIHTGEKP 40
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 93 ECEFCGKKFKYENTLQAHRRNHTGEKP 119
+C C K F ++L H+R HTGEKP
Sbjct: 14 KCNECKKTFTQSSSLTVHQRIHTGEKP 40
>pdb|2EPY|A Chain A, Solution Structure Of The 10th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 268
Length = 42
Score = 35.4 bits (80), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 22/35 (62%)
Query: 83 STTSQEEKNKECEFCGKKFKYENTLQAHRRNHTGE 117
S+ S EK EC CGK F +++ L H+R HTGE
Sbjct: 2 SSGSSGEKLHECNNCGKAFSFKSQLIIHQRIHTGE 36
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 15/24 (62%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGE 211
C CGK F S L +H+R HTGE
Sbjct: 13 CNNCGKAFSFKSQLIIHQRIHTGE 36
>pdb|2EM9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
367- 399) Of Human Zinc Finger Protein 224
Length = 46
Score = 35.0 bits (79), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKP 119
EK C+ CGK F++ + L H+R H+GEKP
Sbjct: 10 EKPYNCKECGKSFRWASCLLKHQRVHSGEKP 40
Score = 32.0 bits (71), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKP 213
C+ CGK F+ S L H+R H+GEKP
Sbjct: 15 CKECGKSFRWASCLLKHQRVHSGEKP 40
>pdb|2EMF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
379- 411) Of Human Zinc Finger Protein 484
Length = 46
Score = 35.0 bits (79), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 21/30 (70%)
Query: 90 KNKECEFCGKKFKYENTLQAHRRNHTGEKP 119
K+ EC CGK F ++TL H++ HTGEKP
Sbjct: 11 KHFECTECGKAFTRKSTLSMHQKIHTGEKP 40
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKP 213
C CGK F S L++H++ HTGEKP
Sbjct: 15 CTECGKAFTRKSTLSMHQKIHTGEKP 40
>pdb|1X6H|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Transcriptional Repressor Ctcf
Length = 86
Score = 35.0 bits (79), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 2/72 (2%)
Query: 206 RSHTGEKPYKCELCSYACAQSSKLTRHMKTH--GRLGKDVYRCRFCEMPFSVPSTLEKHM 263
R+HTGEKPY C C Q L H K + + C C F+ +T+ +H
Sbjct: 8 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHA 67
Query: 264 RKCVVNQNMKME 275
C ++ E
Sbjct: 68 DNCAGPDGVEGE 79
Score = 31.6 bits (70), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 16/29 (55%)
Query: 112 RNHTGEKPFKCTVCDHACSQSAKLKKHMK 140
R HTGEKP+ C+ CD Q L H K
Sbjct: 8 RTHTGEKPYACSHCDKTFRQKQLLDMHFK 36
>pdb|2EOL|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
581- 609) Of Human Zinc Finger Protein 268
Length = 42
Score = 35.0 bits (79), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 21/35 (60%)
Query: 83 STTSQEEKNKECEFCGKKFKYENTLQAHRRNHTGE 117
S+ S EK EC CGK F ++ L H+R HTGE
Sbjct: 2 SSGSSGEKPYECTDCGKAFGLKSQLIIHQRTHTGE 36
Score = 31.6 bits (70), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 16/24 (66%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGE 211
C CGK F S L +H+R+HTGE
Sbjct: 13 CTDCGKAFGLKSQLIIHQRTHTGE 36
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 209 TGEKPYKCELCSYACAQSSKLTRHMKTH 236
+GEKPY+C C A S+L H +TH
Sbjct: 6 SGEKPYECTDCGKAFGLKSQLIIHQRTH 33
>pdb|2EME|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
725- 757) Of Human Zinc Finger Protein 473
Length = 46
Score = 35.0 bits (79), Expect = 0.064, Method: Composition-based stats.
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKP 119
EK C++CGK F L H+R HTGEKP
Sbjct: 10 EKPYVCDYCGKAFGLSAELVRHQRIHTGEKP 40
Score = 34.7 bits (78), Expect = 0.071, Method: Composition-based stats.
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKP 213
C++CGK F + L H+R HTGEKP
Sbjct: 15 CDYCGKAFGLSAELVRHQRIHTGEKP 40
Score = 30.0 bits (66), Expect = 2.0, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 211 EKPYKCELCSYACAQSSKLTRHMKTH 236
EKPY C+ C A S++L RH + H
Sbjct: 10 EKPYVCDYCGKAFGLSAELVRHQRIH 35
Score = 28.1 bits (61), Expect = 7.0, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 117 EKPFKCTVCDHACSQSAKLKKHMKIH 142
EKP+ C C A SA+L +H +IH
Sbjct: 10 EKPYVCDYCGKAFGLSAELVRHQRIH 35
>pdb|2ENH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
556- 588) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 35.0 bits (79), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKP 119
EK EC+ C K F + +L H+R H+GEKP
Sbjct: 10 EKPYECDVCRKAFSHHASLTQHQRVHSGEKP 40
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 19/26 (73%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKP 213
C+ C K F + ++LT H+R H+GEKP
Sbjct: 15 CDVCRKAFSHHASLTQHQRVHSGEKP 40
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 117 EKPFKCTVCDHACSQSAKLKKHMKIH 142
EKP++C VC A S A L +H ++H
Sbjct: 10 EKPYECDVCRKAFSHHASLTQHQRVH 35
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 211 EKPYKCELCSYACAQSSKLTRHMKTH 236
EKPY+C++C A + + LT+H + H
Sbjct: 10 EKPYECDVCRKAFSHHASLTQHQRVH 35
>pdb|2EP3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
631- 663) Of Human Zinc Finger Protein 484
Length = 46
Score = 35.0 bits (79), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 18/26 (69%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKP 213
C CGK F + SNL H++ HTGEKP
Sbjct: 15 CAECGKAFTDRSNLFTHQKIHTGEKP 40
Score = 31.2 bits (69), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKP 119
EK C CGK F + L H++ HTGEKP
Sbjct: 10 EKPYRCAECGKAFTDRSNLFTHQKIHTGEKP 40
>pdb|2EQ2|A Chain A, Solution Structure Of The 16th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 35.0 bits (79), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 16/26 (61%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKP 213
C CGK F S L H+R HTGEKP
Sbjct: 15 CNECGKAFSQTSKLARHQRVHTGEKP 40
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 212 KPYKCELCSYACAQSSKLTRHMKTH 236
KPY+C C A +Q+SKL RH + H
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVH 35
Score = 32.3 bits (72), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 90 KNKECEFCGKKFKYENTLQAHRRNHTGEKP 119
K +C CGK F + L H+R HTGEKP
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHTGEKP 40
Score = 31.2 bits (69), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 118 KPFKCTVCDHACSQSAKLKKHMKIH 142
KP++C C A SQ++KL +H ++H
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVH 35
>pdb|2EPT|A Chain A, Solution Structure Of The First C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 41
Score = 34.7 bits (78), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 83 STTSQEEKNKECEFCGKKFKYENTLQAHRRNHTGEKP 119
S+ S ++ EC+ CGK F+ + +L H R HTG P
Sbjct: 2 SSGSSGQRVYECQECGKSFRQKGSLTLHERIHTGSGP 38
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKP 213
C+ CGK F+ +LT+H R HTG P
Sbjct: 13 CQECGKSFRQKGSLTLHERIHTGSGP 38
>pdb|2YTQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
775- 807) Of Human Zinc Finger Protein 268
Length = 46
Score = 34.7 bits (78), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKP 213
C CGK F + S L +H R+H+GEKP
Sbjct: 15 CSECGKAFSSKSYLIIHMRTHSGEKP 40
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKP 119
EK C CGK F ++ L H R H+GEKP
Sbjct: 10 EKPYGCSECGKAFSSKSYLIIHMRTHSGEKP 40
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 211 EKPYKCELCSYACAQSSKLTRHMKTH 236
EKPY C C A + S L HM+TH
Sbjct: 10 EKPYGCSECGKAFSSKSYLIIHMRTH 35
>pdb|2YU8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
648- 680) Of Human Zinc Finger Protein 347
Length = 46
Score = 34.7 bits (78), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 16/26 (61%), Positives = 17/26 (65%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKP 213
C CGKVF S+L HRR HTG KP
Sbjct: 15 CNECGKVFTQNSHLARHRRVHTGGKP 40
Score = 31.6 bits (70), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 18/31 (58%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKP 119
EK +C CGK F + L HRR HTG KP
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRRVHTGGKP 40
Score = 31.2 bits (69), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 211 EKPYKCELCSYACAQSSKLTRHMKTH 236
EKPYKC C Q+S L RH + H
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRRVH 35
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 117 EKPFKCTVCDHACSQSAKLKKHMKIH 142
EKP+KC C +Q++ L +H ++H
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRRVH 35
>pdb|2EMK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
668- 700) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 34.7 bits (78), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 19/31 (61%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKP 119
EK EC+ CGK F L H+R HTGEKP
Sbjct: 10 EKPYECKECGKAFSQTTHLIQHQRVHTGEKP 40
Score = 34.7 bits (78), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKP 213
C+ CGK F ++L H+R HTGEKP
Sbjct: 15 CKECGKAFSQTTHLIQHQRVHTGEKP 40
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 211 EKPYKCELCSYACAQSSKLTRHMKTH 236
EKPY+C+ C A +Q++ L +H + H
Sbjct: 10 EKPYECKECGKAFSQTTHLIQHQRVH 35
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 117 EKPFKCTVCDHACSQSAKLKKHMKIH 142
EKP++C C A SQ+ L +H ++H
Sbjct: 10 EKPYECKECGKAFSQTTHLIQHQRVH 35
>pdb|2YTA|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 3 In
Zinc Finger Protein 32
Length = 41
Score = 34.7 bits (78), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 20/37 (54%)
Query: 83 STTSQEEKNKECEFCGKKFKYENTLQAHRRNHTGEKP 119
S+ S EK +C+ CGK F +L H R HTG P
Sbjct: 2 SSGSSGEKPYQCKECGKSFSQRGSLAVHERLHTGSGP 38
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKP 213
C+ CGK F +L VH R HTG P
Sbjct: 13 CKECGKSFSQRGSLAVHERLHTGSGP 38
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 115 TGEKPFKCTVCDHACSQSAKLKKHMKIH 142
+GEKP++C C + SQ L H ++H
Sbjct: 6 SGEKPYQCKECGKSFSQRGSLAVHERLH 33
Score = 28.1 bits (61), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 209 TGEKPYKCELCSYACAQSSKLTRHMKTH 236
+GEKPY+C+ C + +Q L H + H
Sbjct: 6 SGEKPYQCKECGKSFSQRGSLAVHERLH 33
>pdb|2YSV|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 17 In
Zinc Finger Protein 473
Length = 42
Score = 34.3 bits (77), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 17/25 (68%)
Query: 187 TCEFCGKVFKNCSNLTVHRRSHTGE 211
C+ CGK F S L++HRR HTGE
Sbjct: 12 VCQECGKAFTQSSCLSIHRRVHTGE 36
Score = 34.3 bits (77), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 20/35 (57%)
Query: 83 STTSQEEKNKECEFCGKKFKYENTLQAHRRNHTGE 117
S+ S EK C+ CGK F + L HRR HTGE
Sbjct: 2 SSGSSGEKPYVCQECGKAFTQSSCLSIHRRVHTGE 36
Score = 31.2 bits (69), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 209 TGEKPYKCELCSYACAQSSKLTRHMKTH 236
+GEKPY C+ C A QSS L+ H + H
Sbjct: 6 SGEKPYVCQECGKAFTQSSCLSIHRRVH 33
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 115 TGEKPFKCTVCDHACSQSAKLKKHMKIH 142
+GEKP+ C C A +QS+ L H ++H
Sbjct: 6 SGEKPYVCQECGKAFTQSSCLSIHRRVH 33
>pdb|2EOW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
368- 400) Of Human Zinc Finger Protein 347
Length = 46
Score = 34.3 bits (77), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 19/26 (73%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKP 213
C CGK F+ S+L +H+ +H+GEKP
Sbjct: 15 CNECGKAFRARSSLAIHQATHSGEKP 40
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKP 119
EK +C CGK F+ ++L H+ H+GEKP
Sbjct: 10 EKPYKCNECGKAFRARSSLAIHQATHSGEKP 40
>pdb|2EP1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
435- 467) Of Human Zinc Finger Protein 484
Length = 46
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKP 119
EK EC CGK F ++ L H+R HTGE P
Sbjct: 10 EKPYECSDCGKSFIKKSQLHVHQRIHTGENP 40
Score = 32.0 bits (71), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 16/26 (61%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKP 213
C CGK F S L VH+R HTGE P
Sbjct: 15 CSDCGKSFIKKSQLHVHQRIHTGENP 40
>pdb|2EMA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
312- 344) Of Human Zinc Finger Protein 347
Length = 46
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 18/26 (69%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKP 213
C CGKVF S L+ H++ HTGEKP
Sbjct: 15 CNECGKVFSRNSQLSQHQKIHTGEKP 40
Score = 32.0 bits (71), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKP 119
EK +C CGK F + L H++ HTGEKP
Sbjct: 10 EKRYKCNECGKVFSRNSQLSQHQKIHTGEKP 40
>pdb|2EM1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
637- 667) Of Human Zinc Finger Protein 268
Length = 44
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 21/37 (56%)
Query: 83 STTSQEEKNKECEFCGKKFKYENTLQAHRRNHTGEKP 119
S+ S EK C CGK F +++ L H+ HTG KP
Sbjct: 2 SSGSSGEKPYSCNECGKAFTFKSQLIVHKGVHTGVKP 38
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 16/27 (59%)
Query: 187 TCEFCGKVFKNCSNLTVHRRSHTGEKP 213
+C CGK F S L VH+ HTG KP
Sbjct: 12 SCNECGKAFTFKSQLIVHKGVHTGVKP 38
>pdb|2YTI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
564- 596) Of Human Zinc Finger Protein 347
Length = 46
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/26 (61%), Positives = 17/26 (65%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKP 213
C CGKVF S+L HR HTGEKP
Sbjct: 15 CNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 31.2 bits (69), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 18/31 (58%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKP 119
EK +C CGK F + L HR HTGEKP
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 14/26 (53%)
Query: 211 EKPYKCELCSYACAQSSKLTRHMKTH 236
EKPYKC C Q+S L RH H
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRGIH 35
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 117 EKPFKCTVCDHACSQSAKLKKHMKIH 142
EKP+KC C +Q++ L +H IH
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRGIH 35
>pdb|2EPZ|A Chain A, Solution Structure Of The 4th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 28 Homolog
Length = 46
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 18/31 (58%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKP 119
EK +C CGK F L HRR HTGEKP
Sbjct: 10 EKPFDCIDCGKAFSDHIGLNQHRRIHTGEKP 40
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 16/26 (61%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKP 213
C CGK F + L HRR HTGEKP
Sbjct: 15 CIDCGKAFSDHIGLNQHRRIHTGEKP 40
Score = 27.7 bits (60), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 117 EKPFKCTVCDHACSQSAKLKKHMKIH 142
EKPF C C A S L +H +IH
Sbjct: 10 EKPFDCIDCGKAFSDHIGLNQHRRIH 35
>pdb|2YTN|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
732- 764) Of Human Zinc Finger Protein 347
Length = 46
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/26 (61%), Positives = 17/26 (65%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKP 213
C CGKVF S+L HR HTGEKP
Sbjct: 15 CNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKP 119
+K +C CGK F + L HR HTGEKP
Sbjct: 10 KKPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 28.1 bits (61), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 211 EKPYKCELCSYACAQSSKLTRHMKTH 236
+KPYKC C Q+S L RH H
Sbjct: 10 KKPYKCNECGKVFTQNSHLARHRGIH 35
>pdb|2ENA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
311- 343) Of Human Zinc Finger Protein 224
Length = 46
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 84 TTSQEEKNKECEFCGKKFKYENTLQAHRRNHTGEKP 119
++ EK C+ C K F+ + L +HR HTGEKP
Sbjct: 5 SSGTAEKPFRCDTCDKSFRQRSALNSHRMIHTGEKP 40
Score = 32.0 bits (71), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 115 TGEKPFKCTVCDHACSQSAKLKKHMKIH 142
T EKPF+C CD + Q + L H IH
Sbjct: 8 TAEKPFRCDTCDKSFRQRSALNSHRMIH 35
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 16/26 (61%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKP 213
C+ C K F+ S L HR HTGEKP
Sbjct: 15 CDTCDKSFRQRSALNSHRMIHTGEKP 40
>pdb|2ENF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
340- 372) Of Human Zinc Finger Protein 347
Length = 46
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/26 (61%), Positives = 17/26 (65%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKP 213
C CGKVF S+L HR HTGEKP
Sbjct: 15 CNECGKVFTQNSHLVRHRGIHTGEKP 40
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 18/31 (58%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKP 119
EK +C CGK F + L HR HTGEKP
Sbjct: 10 EKPYKCNECGKVFTQNSHLVRHRGIHTGEKP 40
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 14/26 (53%)
Query: 211 EKPYKCELCSYACAQSSKLTRHMKTH 236
EKPYKC C Q+S L RH H
Sbjct: 10 EKPYKCNECGKVFTQNSHLVRHRGIH 35
Score = 27.7 bits (60), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 117 EKPFKCTVCDHACSQSAKLKKHMKIH 142
EKP+KC C +Q++ L +H IH
Sbjct: 10 EKPYKCNECGKVFTQNSHLVRHRGIH 35
>pdb|2LVT|A Chain A, Solution Structure Of Miz-1 Zinc Finger 9
Length = 29
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 93 ECEFCGKKFKYENTLQAHRRNHTGEK 118
+C CGK F ++L AH R HTGEK
Sbjct: 4 QCVMCGKAFTQASSLIAHVRQHTGEK 29
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 15/25 (60%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEK 212
C CGK F S+L H R HTGEK
Sbjct: 5 CVMCGKAFTQASSLIAHVRQHTGEK 29
>pdb|2EOI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
329- 359) Of Human Zinc Finger Protein 268
Length = 44
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 21/37 (56%)
Query: 83 STTSQEEKNKECEFCGKKFKYENTLQAHRRNHTGEKP 119
S+ S EK EC C K F + + L H+R HTGE P
Sbjct: 2 SSGSSGEKLHECSECRKTFSFHSQLVIHQRIHTGENP 38
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKP 213
C C K F S L +H+R HTGE P
Sbjct: 13 CSECRKTFSFHSQLVIHQRIHTGENP 38
>pdb|2DRP|A Chain A, The Crystal Structure Of A Two Zinc-Finger Peptide Reveals
An Extension To The Rules For Zinc-FingerDNA RECOGNITION
pdb|2DRP|D Chain D, The Crystal Structure Of A Two Zinc-Finger Peptide Reveals
An Extension To The Rules For Zinc-FingerDNA RECOGNITION
Length = 66
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 25/55 (45%)
Query: 210 GEKPYKCELCSYACAQSSKLTRHMKTHGRLGKDVYRCRFCEMPFSVPSTLEKHMR 264
GE Y+C++CS S RH T + VY C FC F+ + H++
Sbjct: 7 GEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVK 61
>pdb|2EM3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
640- 672) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 19/26 (73%)
Query: 211 EKPYKCELCSYACAQSSKLTRHMKTH 236
EKPY+C++CS A Q + L +H KTH
Sbjct: 10 EKPYECKVCSKAFTQKAHLAQHQKTH 35
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKP 119
EK EC+ C K F + L H++ HTGEKP
Sbjct: 10 EKPYECKVCSKAFTQKAHLAQHQKTHTGEKP 40
Score = 32.0 bits (71), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKP 213
C+ C K F ++L H+++HTGEKP
Sbjct: 15 CKVCSKAFTQKAHLAQHQKTHTGEKP 40
Score = 31.2 bits (69), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 117 EKPFKCTVCDHACSQSAKLKKHMKIH 142
EKP++C VC A +Q A L +H K H
Sbjct: 10 EKPYECKVCSKAFTQKAHLAQHQKTH 35
>pdb|2EQ3|A Chain A, Solution Structure Of The 17th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKP 119
EK EC CGK F ++L H+ HTG+KP
Sbjct: 10 EKPYECNQCGKAFSVRSSLTTHQAIHTGKKP 40
Score = 31.2 bits (69), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKP 213
C CGK F S+LT H+ HTG+KP
Sbjct: 15 CNQCGKAFSVRSSLTTHQAIHTGKKP 40
>pdb|2EMP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
536- 568) Of Human Zinc Finger Protein 347
Length = 46
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 17/26 (65%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKP 213
C CGK F S+LT H+ HTGEKP
Sbjct: 15 CNECGKAFSVYSSLTTHQVIHTGEKP 40
Score = 31.2 bits (69), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 94 CEFCGKKFKYENTLQAHRRNHTGEKP 119
C CGK F ++L H+ HTGEKP
Sbjct: 15 CNECGKAFSVYSSLTTHQVIHTGEKP 40
>pdb|2YTS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
715- 747) Of Human Zinc Finger Protein 484
Length = 46
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/27 (59%), Positives = 17/27 (62%)
Query: 187 TCEFCGKVFKNCSNLTVHRRSHTGEKP 213
C CGK F S+L HRR HTGEKP
Sbjct: 14 ICNECGKSFIQKSHLNRHRRIHTGEKP 40
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 19/31 (61%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKP 119
EK C CGK F ++ L HRR HTGEKP
Sbjct: 10 EKPYICNECGKSFIQKSHLNRHRRIHTGEKP 40
Score = 27.7 bits (60), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 211 EKPYKCELCSYACAQSSKLTRHMKTH 236
EKPY C C + Q S L RH + H
Sbjct: 10 EKPYICNECGKSFIQKSHLNRHRRIH 35
>pdb|2DLK|A Chain A, Solution Structure Of The First And The Second Zf-C2h2
Domains Of Zinc Finger Protein 692
Length = 79
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 8/74 (10%)
Query: 188 CEF--CGKVFKNCSNLTVHRR-SHTGEKPYKCELCSYACAQSSKLTRHMKTHGRLGKDVY 244
C+F CG++F N L H++ H +K + C AC +S +H+K H +L D
Sbjct: 10 CDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCP--EPACGKSFNFKKHLKEHMKLHSDT- 66
Query: 245 RCRFCEMPFSVPST 258
R CE FS PS+
Sbjct: 67 RDYICE--FSGPSS 78
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
Query: 94 CEF--CGKKFKYENTLQAHRR-NHTGEKPFKCTVCDHACSQSAKLKKHMKIH 142
C+F CG+ F L H++ H +K F C + AC +S KKH+K H
Sbjct: 10 CDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCP--EPACGKSFNFKKHLKEH 59
>pdb|2EN8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
171- 203) Of Human Zinc Finger Protein 224
Length = 46
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEK 118
EK+ C+ CGK F Y + L+ H+R H GEK
Sbjct: 10 EKSHTCDECGKNFCYISALRIHQRVHMGEK 39
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 184 RNDTCEFCGKVFKNCSNLTVHRRSHTGEK 212
++ TC+ CGK F S L +H+R H GEK
Sbjct: 11 KSHTCDECGKNFCYISALRIHQRVHMGEK 39
>pdb|1SP2|A Chain A, Nmr Structure Of A Zinc Finger Domain From Transcription
Factor Sp1f2, Minimized Average Structure
pdb|1VA2|A Chain A, Solution Structure Of Transcription Factor Sp1 Dna Binding
Domain (Zinc Finger 2)
Length = 31
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 17/23 (73%)
Query: 96 FCGKKFKYENTLQAHRRNHTGEK 118
+CGK+F + LQ H+R HTGEK
Sbjct: 9 YCGKRFTRSDELQRHKRTHTGEK 31
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 187 TCEFCGKVFKNCSNLTVHRRSHTGEK 212
T +CGK F L H+R+HTGEK
Sbjct: 6 TWSYCGKRFTRSDELQRHKRTHTGEK 31
>pdb|2EQ0|A Chain A, Solution Structure Of The 8th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 347
Length = 46
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 18/26 (69%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKP 213
C CGKVF+ S+L H+ HTGEKP
Sbjct: 15 CHECGKVFRRNSHLARHQLIHTGEKP 40
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKP 119
EK +C CGK F+ + L H+ HTGEKP
Sbjct: 10 EKPYKCHECGKVFRRNSHLARHQLIHTGEKP 40
>pdb|2EN4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
284- 316) Of Human Zinc Finger Protein 347
Length = 46
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 15/25 (60%), Positives = 17/25 (68%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEK 212
C CGK F+ SNLT H+ HTGEK
Sbjct: 15 CYECGKAFRTRSNLTTHQVIHTGEK 39
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 83 STTSQEEKNKECEFCGKKFKYENTLQAHRRNHTGEK 118
++ +EK +C CGK F+ + L H+ HTGEK
Sbjct: 4 GSSGTKEKPYKCYECGKAFRTRSNLTTHQVIHTGEK 39
>pdb|2EMW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
301- 331) Of Human Zinc Finger Protein 268
Length = 44
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 21/36 (58%)
Query: 83 STTSQEEKNKECEFCGKKFKYENTLQAHRRNHTGEK 118
S+ S EK C CGK F ++ L H+R HTGEK
Sbjct: 2 SSGSSGEKPYGCNECGKDFSSKSYLIVHQRIHTGEK 37
Score = 32.0 bits (71), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 15/25 (60%), Positives = 17/25 (68%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEK 212
C CGK F + S L VH+R HTGEK
Sbjct: 13 CNECGKDFSSKSYLIVHQRIHTGEK 37
>pdb|2EPU|A Chain A, Solution Structure Of The Secound C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 45
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEK 118
+K EC CGK F+ + L H+R HTGEK
Sbjct: 10 QKPFECTHCGKSFRAKGNLVTHQRIHTGEK 39
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 16/25 (64%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEK 212
C CGK F+ NL H+R HTGEK
Sbjct: 15 CTHCGKSFRAKGNLVTHQRIHTGEK 39
>pdb|2EM5|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
768- 800) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 90 KNKECEFCGKKFKYENTLQAHRRNHTGEKP 119
K+ +C CG+ F ++ L H+R HTGEKP
Sbjct: 11 KSHQCHECGRGFTLKSHLNQHQRIHTGEKP 40
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 184 RNDTCEFCGKVFKNCSNLTVHRRSHTGEKP 213
++ C CG+ F S+L H+R HTGEKP
Sbjct: 11 KSHQCHECGRGFTLKSHLNQHQRIHTGEKP 40
>pdb|2YRH|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(699- 729) From Zinc Finger Protein 473
Length = 44
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 22/37 (59%)
Query: 83 STTSQEEKNKECEFCGKKFKYENTLQAHRRNHTGEKP 119
S+ S +K C CGK F+ + L H+R H+GEKP
Sbjct: 2 SSGSSGKKPLVCNECGKTFRQSSCLSKHQRIHSGEKP 38
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 187 TCEFCGKVFKNCSNLTVHRRSHTGEKP 213
C CGK F+ S L+ H+R H+GEKP
Sbjct: 12 VCNECGKTFRQSSCLSKHQRIHSGEKP 38
>pdb|2EMM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
544- 576) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 32.7 bits (73), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 184 RNDTCEFCGKVFKNCSNLTVHRRSHTGEKP 213
R C CGK F ++L H+R HTGEKP
Sbjct: 11 RPHKCNECGKSFIQSAHLIQHQRIHTGEKP 40
Score = 31.2 bits (69), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKP 119
E+ +C CGK F L H+R HTGEKP
Sbjct: 10 ERPHKCNECGKSFIQSAHLIQHQRIHTGEKP 40
>pdb|2EL4|A Chain A, Solution Structure Of The 15th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 46
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 16/26 (61%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKP 213
C C K F S L VH+RSHTG KP
Sbjct: 15 CSQCAKTFSLKSQLIVHQRSHTGVKP 40
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 90 KNKECEFCGKKFKYENTLQAHRRNHTGEKP 119
K C C K F ++ L H+R+HTG KP
Sbjct: 11 KPYGCSQCAKTFSLKSQLIVHQRSHTGVKP 40
>pdb|2EM2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
584- 616) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKP 119
EK +C+ CGK F+ L +H R HTGEKP
Sbjct: 10 EKPFKCKECGKAFRQNIHLASHLRIHTGEKP 40
Score = 32.0 bits (71), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKP 213
C+ CGK F+ +L H R HTGEKP
Sbjct: 15 CKECGKAFRQNIHLASHLRIHTGEKP 40
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 117 EKPFKCTVCDHACSQSAKLKKHMKIH 142
EKPFKC C A Q+ L H++IH
Sbjct: 10 EKPFKCKECGKAFRQNIHLASHLRIH 35
>pdb|2LT7|A Chain A, Solution Nmr Structure Of Kaiso Zinc Finger Dna Binding
Domain In Complex With Kaiso Binding Site Dna
pdb|4F6M|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Domain
In Complex With Kaiso Binding Site Dna
pdb|4F6N|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Protein
In Complex With Methylated Cpg Site Dna
Length = 133
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 24/48 (50%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKPYKCELCSYACAQSSKLTRHMKT 235
C +C KVF T H HTGE+ Y+C C + ++ H+K+
Sbjct: 53 CRYCEKVFPLAEYRTKHEIHHTGERRYQCLACGKSFINYQFMSSHIKS 100
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 23/52 (44%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKPFKCTVCDHACSQSAKLKKHMK 140
EK C +C K F H +HTGE+ ++C C + + H+K
Sbjct: 48 EKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLACGKSFINYQFMSSHIK 99
>pdb|2EON|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
397- 429) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKP 119
EK +C+ CGK F+ + L H H+GE+P
Sbjct: 10 EKPYKCQVCGKAFRVSSHLVQHHSVHSGERP 40
Score = 32.0 bits (71), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKP 213
C+ CGK F+ S+L H H+GE+P
Sbjct: 15 CQVCGKAFRVSSHLVQHHSVHSGERP 40
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 211 EKPYKCELCSYACAQSSKLTRHMKTH 236
EKPYKC++C A SS L +H H
Sbjct: 10 EKPYKCQVCGKAFRVSSHLVQHHSVH 35
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 117 EKPFKCTVCDHACSQSAKLKKHMKIH 142
EKP+KC VC A S+ L +H +H
Sbjct: 10 EKPYKCQVCGKAFRVSSHLVQHHSVH 35
>pdb|2ENC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
395- 427) Of Human Zinc Finger Protein 224
Length = 46
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKP 119
EK +CE CGK F + +H+R+H+GEKP
Sbjct: 10 EKPFKCEECGKGFYTNSQCYSHQRSHSGEKP 40
Score = 32.3 bits (72), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 17/26 (65%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKP 213
CE CGK F S H+RSH+GEKP
Sbjct: 15 CEECGKGFYTNSQCYSHQRSHSGEKP 40
>pdb|2EMY|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
551- 583) Of Human Zinc Finger Protein 268
Length = 46
Score = 32.3 bits (72), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 93 ECEFCGKKFKYENTLQAHRRNHTGEKP 119
EC CGK F + L +H+R H GEKP
Sbjct: 14 ECHECGKAFSRKYQLISHQRTHAGEKP 40
Score = 31.2 bits (69), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKP 213
C CGK F L H+R+H GEKP
Sbjct: 15 CHECGKAFSRKYQLISHQRTHAGEKP 40
>pdb|2EN7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
495- 525) Of Human Zinc Finger Protein 268
Length = 44
Score = 32.3 bits (72), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 187 TCEFCGKVFKNCSNLTVHRRSHTGE 211
C CGK F++ S L +H R+HTGE
Sbjct: 14 VCNECGKAFRSKSYLIIHTRTHTGE 38
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 94 CEFCGKKFKYENTLQAHRRNHTGE 117
C CGK F+ ++ L H R HTGE
Sbjct: 15 CNECGKAFRSKSYLIIHTRTHTGE 38
>pdb|2ELR|A Chain A, Solution Structure Of The 15th C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 32.3 bits (72), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 83 STTSQEEKNKECEFCGKKFKYENTLQAHRRNHTGE 117
++ K C+ CGKKFK + TL++H+ HT +
Sbjct: 1 GSSGSSGKTHLCDMCGKKFKSKGTLKSHKLLHTAD 35
>pdb|2YSP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
507- 539) Of Human Zinc Finger Protein 224
Length = 46
Score = 32.3 bits (72), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 19/26 (73%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKP 213
CE CGK + + NL +H++ HTGE+P
Sbjct: 15 CEKCGKGYNSKFNLDMHQKVHTGERP 40
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKP 119
EK +CE CGK + + L H++ HTGE+P
Sbjct: 10 EKPYKCEKCGKGYNSKFNLDMHQKVHTGERP 40
>pdb|2EOE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
508- 540) Of Human Zinc Finger Protein 347
Length = 46
Score = 32.0 bits (71), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 17/26 (65%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKP 213
C CGKVF S+L H+R HTG KP
Sbjct: 15 CNECGKVFTQNSHLANHQRIHTGVKP 40
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKP 119
EK +C CGK F + L H+R HTG KP
Sbjct: 10 EKPYKCNECGKVFTQNSHLANHQRIHTGVKP 40
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 211 EKPYKCELCSYACAQSSKLTRHMKTH 236
EKPYKC C Q+S L H + H
Sbjct: 10 EKPYKCNECGKVFTQNSHLANHQRIH 35
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 117 EKPFKCTVCDHACSQSAKLKKHMKIH 142
EKP+KC C +Q++ L H +IH
Sbjct: 10 EKPYKCNECGKVFTQNSHLANHQRIH 35
>pdb|2EOZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
809- 841) Of Human Zinc Finger Protein 473
Length = 46
Score = 32.0 bits (71), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 117 EKPFKCTVCDHACSQSAKLKKHMKIH 142
EKP+ C VC A SA L +H+++H
Sbjct: 10 EKPYSCNVCGKAFVLSAHLNQHLRVH 35
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 211 EKPYKCELCSYACAQSSKLTRHMKTH 236
EKPY C +C A S+ L +H++ H
Sbjct: 10 EKPYSCNVCGKAFVLSAHLNQHLRVH 35
>pdb|2YTO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
659- 691) Of Human Zinc Finger Protein 484
Length = 46
Score = 32.0 bits (71), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEK 212
C CGK F S L +H++SHTGE+
Sbjct: 15 CSDCGKAFTRKSGLHIHQQSHTGER 39
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEK 118
EK +C CGK F ++ L H+++HTGE+
Sbjct: 10 EKPYKCSDCGKAFTRKSGLHIHQQSHTGER 39
>pdb|2EOV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
519- 551) Of Human Zinc Finger Protein 484
Length = 46
Score = 31.6 bits (70), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 21/30 (70%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEK 118
EK +C CGK F +++ L+ H++ HTGE+
Sbjct: 10 EKPYKCSDCGKSFTWKSRLRIHQKCHTGER 39
Score = 28.1 bits (61), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEK 212
C CGK F S L +H++ HTGE+
Sbjct: 15 CSDCGKSFTWKSRLRIHQKCHTGER 39
>pdb|2EOF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
411- 441) Of Human Zinc Finger Protein 268
Length = 44
Score = 31.6 bits (70), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 16/24 (66%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGE 211
C C K F SNL VH+R+HTGE
Sbjct: 15 CNECQKAFNTKSNLMVHQRTHTGE 38
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGE 117
EK EC C K F ++ L H+R HTGE
Sbjct: 10 EKPYECNECQKAFNTKSNLMVHQRTHTGE 38
>pdb|2EL5|A Chain A, Solution Structure Of The 18th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 42
Score = 31.6 bits (70), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 20/35 (57%)
Query: 83 STTSQEEKNKECEFCGKKFKYENTLQAHRRNHTGE 117
S+ S E EC CGK F ++ L +H+R H GE
Sbjct: 2 SSGSSGENPYECSECGKAFNRKDQLISHQRTHAGE 36
Score = 28.1 bits (61), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 209 TGEKPYKCELCSYACAQSSKLTRHMKTH 236
+GE PY+C C A + +L H +TH
Sbjct: 6 SGENPYECSECGKAFNRKDQLISHQRTH 33
>pdb|2ELY|A Chain A, Solution Structure Of The Third Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 31.6 bits (70), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKP 119
EK +C CGK F + L H + HTGEKP
Sbjct: 10 EKPFKCVECGKGFSRRSALNVHHKLHTGEKP 40
Score = 31.2 bits (69), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 16/26 (61%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKP 213
C CGK F S L VH + HTGEKP
Sbjct: 15 CVECGKGFSRRSALNVHHKLHTGEKP 40
Score = 28.1 bits (61), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 117 EKPFKCTVCDHACSQSAKLKKHMKIH 142
EKPFKC C S+ + L H K+H
Sbjct: 10 EKPFKCVECGKGFSRRSALNVHHKLH 35
>pdb|2ELQ|A Chain A, Solution Structure Of The 14th C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 31.2 bits (69), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 118 KPFKCTVCDHACSQSAKLKKHMKIH 142
KPFKC++C++A + LK HM H
Sbjct: 8 KPFKCSLCEYATRSKSNLKAHMNRH 32
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 14/25 (56%)
Query: 212 KPYKCELCSYACAQSSKLTRHMKTH 236
KP+KC LC YA S L HM H
Sbjct: 8 KPFKCSLCEYATRSKSNLKAHMNRH 32
>pdb|2KVH|A Chain A, Structure Of The Three-Cys2his2 Domain Of Mouse Testis
Zinc Finger Protein
Length = 27
Score = 31.2 bits (69), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 211 EKPYKCELCSYACAQSSKLTRHMKTHG 237
EKP+ C LC S +T+H++THG
Sbjct: 1 EKPFSCSLCPQRSRDFSAMTKHLRTHG 27
>pdb|2EMV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
859- 889) Of Human Zinc Finger Protein 268
Length = 44
Score = 31.2 bits (69), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 16/24 (66%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGE 211
C CGK F S L VH+R+H+GE
Sbjct: 15 CSECGKAFIRNSQLIVHQRTHSGE 38
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 84 TTSQEEKNKECEFCGKKFKYENTLQAHRRNHTGE 117
++ EK EC CGK F + L H+R H+GE
Sbjct: 5 SSGTREKPYECSECGKAFIRNSQLIVHQRTHSGE 38
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 207 SHTGEKPYKCELCSYACAQSSKLTRHMKTH 236
S T EKPY+C C A ++S+L H +TH
Sbjct: 6 SGTREKPYECSECGKAFIRNSQLIVHQRTH 35
>pdb|2YTG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
369- 401) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 31.2 bits (69), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKP 213
C CGK + +LT H+R HTGEKP
Sbjct: 15 CGECGKSYNQRVHLTQHQRVHTGEKP 40
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKP 119
EK +C CGK + L H+R HTGEKP
Sbjct: 10 EKPFKCGECGKSYNQRVHLTQHQRVHTGEKP 40
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 117 EKPFKCTVCDHACSQSAKLKKHMKIH 142
EKPFKC C + +Q L +H ++H
Sbjct: 10 EKPFKCGECGKSYNQRVHLTQHQRVH 35
>pdb|2EM7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
339- 371) Of Human Zinc Finger Protein 224
Length = 46
Score = 31.2 bits (69), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 17/31 (54%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKP 119
EK +CE CGK F L H HTGEKP
Sbjct: 10 EKPYKCEECGKGFICRRDLYTHHMVHTGEKP 40
Score = 28.1 bits (61), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 15/26 (57%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKP 213
CE CGK F +L H HTGEKP
Sbjct: 15 CEECGKGFICRRDLYTHHMVHTGEKP 40
>pdb|2YTD|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
426- 458) Of Human Zinc Finger Protein 473
Length = 46
Score = 31.2 bits (69), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 17/31 (54%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKP 119
EK +C CGK F L HRR HTG +P
Sbjct: 10 EKPYKCSECGKAFHRHTHLNEHRRIHTGYRP 40
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKP 213
C CGK F ++L HRR HTG +P
Sbjct: 15 CSECGKAFHRHTHLNEHRRIHTGYRP 40
>pdb|2ELT|A Chain A, Solution Structure Of The 3rd C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 31.2 bits (69), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 207 SHTGEKPYKCELCSYACAQSSKLTRHMKTH 236
S + KPYKC CSYA A + L H++ H
Sbjct: 3 SGSSGKPYKCPQCSYASAIKANLNVHLRKH 32
>pdb|2YTM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
696- 728) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKP 213
C CGK F + S+ T H+R HTG++P
Sbjct: 15 CMECGKAFGDNSSCTQHQRLHTGQRP 40
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKP 119
EK +C CGK F ++ H+R HTG++P
Sbjct: 10 EKPYKCMECGKAFGDNSSCTQHQRLHTGQRP 40
>pdb|1P7A|A Chain A, Solution Stucture Of The Third Zinc Finger From Bklf
Length = 37
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 112 RNHTGEKPFKCTVCDHACSQSAKLKKHMKIH 142
R TG KPF+C CD + S+S L H K H
Sbjct: 4 RGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
>pdb|2EPQ|A Chain A, Solution Structure Of The Third Zinc Finger Domain Of Zinc
Finger Protein 278
Length = 45
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 209 TGEKPYKCELCSYACAQSSKLTRHMKTH-GRLGK 241
+GEKPY C +C + +++ H+++H G +GK
Sbjct: 6 SGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGK 39
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 83 STTSQEEKNKECEFCGKKFKYENTLQAHRRNHTG 116
S+ S EK C CG +FK ++ + H R+H G
Sbjct: 2 SSGSSGEKPYSCPVCGLRFKRKDRMSYHVRSHDG 35
>pdb|2EN0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
385- 413) Of Human Zinc Finger Protein 268
Length = 42
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 14/25 (56%)
Query: 187 TCEFCGKVFKNCSNLTVHRRSHTGE 211
C CGK F S L +H R HTGE
Sbjct: 12 VCNECGKAFGLKSQLIIHERIHTGE 36
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 19/35 (54%)
Query: 83 STTSQEEKNKECEFCGKKFKYENTLQAHRRNHTGE 117
S+ S +K C CGK F ++ L H R HTGE
Sbjct: 2 SSGSSGQKPYVCNECGKAFGLKSQLIIHERIHTGE 36
>pdb|2EPV|A Chain A, Solution Structure Of The 20th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 268
Length = 44
Score = 30.0 bits (66), Expect = 2.1, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTG 116
EK EC CGK F +++ L H R H G
Sbjct: 10 EKPYECNECGKAFIWKSLLIVHERTHAG 37
>pdb|2EMC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
641- 673) Of Human Zinc Finger Protein 473
Length = 46
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 15/28 (53%)
Query: 115 TGEKPFKCTVCDHACSQSAKLKKHMKIH 142
T E PFKC C S SA L KH IH
Sbjct: 8 TKEHPFKCNECGKTFSHSAHLSKHQLIH 35
>pdb|2YTB|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 5 In
Zinc Finger Protein 32
Length = 42
Score = 29.6 bits (65), Expect = 2.2, Method: Composition-based stats.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKP 119
EK C+ CGK F + +L H R HTG P
Sbjct: 9 EKPYRCDQCGKAFSQKGSLIVHIRVHTGSGP 39
Score = 29.6 bits (65), Expect = 2.6, Method: Composition-based stats.
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKP 213
C+ CGK F +L VH R HTG P
Sbjct: 14 CDQCGKAFSQKGSLIVHIRVHTGSGP 39
Score = 29.3 bits (64), Expect = 3.5, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 211 EKPYKCELCSYACAQSSKLTRHMKTH 236
EKPY+C+ C A +Q L H++ H
Sbjct: 9 EKPYRCDQCGKAFSQKGSLIVHIRVH 34
Score = 28.5 bits (62), Expect = 6.1, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 117 EKPFKCTVCDHACSQSAKLKKHMKIH 142
EKP++C C A SQ L H+++H
Sbjct: 9 EKPYRCDQCGKAFSQKGSLIVHIRVH 34
>pdb|2EPS|A Chain A, Solution Structure Of The 4th Zinc Finger Domain Of Zinc
Finger Protein 278
Length = 54
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 94 CEFCGKKFKYENTLQAH-RRNHTGEKPFKCTV 124
C+ CGK F + L H ++ HT E+P KC V
Sbjct: 15 CQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV 46
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 187 TCEFCGKVFKNCSNLTVH-RRSHTGEKPYKCEL 218
C+ CGK F +L H ++ HT E+P+KC++
Sbjct: 14 ICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV 46
>pdb|2ELZ|A Chain A, Solution Structure Of The 17th Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEK 212
CE CGK + NL +H+R H GEK
Sbjct: 15 CEDCGKGYNRRLNLDMHQRVHMGEK 39
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEK 118
EK +CE CGK + L H+R H GEK
Sbjct: 10 EKPYKCEDCGKGYNRRLNLDMHQRVHMGEK 39
>pdb|2EQ4|A Chain A, Solution Structure Of The 11th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 224
Length = 46
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 17/31 (54%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKP 119
EK C+ CGK F L H R H+GEKP
Sbjct: 10 EKLYNCKECGKSFSRAPCLLKHERLHSGEKP 40
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKP 213
C+ CGK F L H R H+GEKP
Sbjct: 15 CKECGKSFSRAPCLLKHERLHSGEKP 40
>pdb|2EM8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
423- 455) Of Human Zinc Finger Protein 224
Length = 46
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEK 118
EK +C CGK +K L H+R HTGEK
Sbjct: 10 EKPYKCVECGKGYKRRLDLDFHQRVHTGEK 39
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEK 212
C CGK +K +L H+R HTGEK
Sbjct: 15 CVECGKGYKRRLDLDFHQRVHTGEK 39
>pdb|2EOQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
283- 315) Of Human Zinc Finger Protein 224
Length = 46
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 211 EKPYKCELCSYACAQSSKLTRHMKTH 236
EKP+KC++C + S+L RH H
Sbjct: 10 EKPFKCDICGKSFCGRSRLNRHSMVH 35
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKP 119
EK +C+ CGK F + L H HT EKP
Sbjct: 10 EKPFKCDICGKSFCGRSRLNRHSMVHTAEKP 40
Score = 27.7 bits (60), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 117 EKPFKCTVCDHACSQSAKLKKHMKIH 142
EKPFKC +C + ++L +H +H
Sbjct: 10 EKPFKCDICGKSFCGRSRLNRHSMVH 35
>pdb|1XF7|A Chain A, High Resolution Nmr Structure Of The Wilms' Tumor
Suppressor Protein (Wt1) Finger 3
Length = 29
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 93 ECEFCGKKFKYENTLQAHRRNHTGEK 118
+C+ C +KF + L+ H R HTGEK
Sbjct: 4 QCKTCQRKFSRSDHLKTHTRTHTGEK 29
>pdb|2YTJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
771- 803) Of Human Zinc Finger Protein 484
Length = 46
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKP 213
C CGK F SNL H++ HT +KP
Sbjct: 15 CAECGKAFTIRSNLIKHQKIHTKQKP 40
>pdb|2EMX|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
273- 303) Of Human Zinc Finger Protein 268
Length = 44
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 115 TGEKPFKCTVCDHACSQSAKLKKHMKIH 142
+GEKPF C+ C+ A S + L H + H
Sbjct: 6 SGEKPFGCSCCEKAFSSKSYLLVHQQTH 33
>pdb|2YTE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
484- 512) Of Human Zinc Finger Protein 473
Length = 42
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 115 TGEKPFKCTVCDHACSQSAKLKKHMKIH 142
+GEKP+ C C S + +L +H K+H
Sbjct: 6 SGEKPYSCAECKETFSDNNRLVQHQKMH 33
Score = 28.1 bits (61), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 209 TGEKPYKCELCSYACAQSSKLTRHMKTH 236
+GEKPY C C + +++L +H K H
Sbjct: 6 SGEKPYSCAECKETFSDNNRLVQHQKMH 33
>pdb|2LVU|A Chain A, Solution Structure Of Miz-1 Zinc Finger 10
Length = 26
Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 212 KPYKCELCSYACAQSSKLTRHMKTH 236
KPY CE C QSS+L H++ H
Sbjct: 1 KPYVCERCGKRFVQSSQLANHIRHH 25
>pdb|1U85|A Chain A, Arg326-Trp Mutant Of The Third Zinc Finger Of Bklf
Length = 33
Score = 28.5 bits (62), Expect = 6.2, Method: Composition-based stats.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 115 TGEKPFKCTVCDHACSQSAKLKKHMKIH 142
TG KPF+C CD + S+S L H K H
Sbjct: 3 TGIKPFQCPDCDWSFSRSDHLALHRKRH 30
>pdb|2EOK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
441- 469) Of Human Zinc Finger Protein 268
Length = 42
Score = 28.5 bits (62), Expect = 6.3, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 83 STTSQEEKNKECEFCGKKFKYENTLQAHRRNHTG 116
S+ S EK C CGK F +++ L H+ HTG
Sbjct: 2 SSGSSGEKPYVCSDCGKAFTFKSQLIVHQGIHTG 35
>pdb|2KVF|A Chain A, Structure Of The Three-Cys2his2 Domain Of Mouse Testis
Zinc Finger Protein
Length = 28
Score = 28.1 bits (61), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 94 CEFCGKKFKYENTLQAHRRNHTG 116
C CGK+F ++ ++ H R HTG
Sbjct: 6 CSVCGKRFSLKHQMETHYRVHTG 28
>pdb|1WJP|A Chain A, Solution Structure Of Zf-C2h2 Domains From Human Zinc
Finger Protein 295
Length = 107
Score = 28.1 bits (61), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Query: 214 YKCELCSYACAQSSKLTRHMKTHGRLGKDVYRCRFCEMPFSVPSTLEKHMRKC 266
Y+C LC+ A+ S L +H RL ++ C +C + F P ++H KC
Sbjct: 17 YQCRLCN---AKLSSLLEQ-GSHERLCRNAAVCPYCSLRFFSPELKQEHESKC 65
>pdb|2ENT|A Chain A, Solution Structure Of The Second C2h2-Type Zinc Finger
Domain From Human Krueppel-Like Factor 15
Length = 48
Score = 28.1 bits (61), Expect = 7.6, Method: Composition-based stats.
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 97 CGKKFKYENTLQAHRRNHTGEKP 119
CG +F + L HRR+H+G KP
Sbjct: 20 CGWRFSRSDELSRHRRSHSGVKP 42
>pdb|2YTT|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
204- 236) Of Human Zinc Finger Protein 473
Length = 46
Score = 28.1 bits (61), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 212 KPYKCELCSYACAQSSKLTRHMKTHGR 238
KPY+C C + + S +LT+H TH R
Sbjct: 11 KPYQCSECGKSFSGSYRLTQHWITHTR 37
Score = 27.7 bits (60), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 14/26 (53%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKP 213
C CGK F LT H +HT EKP
Sbjct: 15 CSECGKSFSGSYRLTQHWITHTREKP 40
>pdb|2M0F|A Chain A, Solution Structure Of Miz-1 Zinc Finger 7
Length = 29
Score = 28.1 bits (61), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 14/25 (56%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEK 212
C CGK F NL H R H+GEK
Sbjct: 5 CRECGKQFTTSGNLKRHLRIHSGEK 29
Score = 27.7 bits (60), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 93 ECEFCGKKFKYENTLQAHRRNHTGEK 118
+C CGK+F L+ H R H+GEK
Sbjct: 4 KCRECGKQFTTSGNLKRHLRIHSGEK 29
>pdb|2EMZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
628- 660) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 28.1 bits (61), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 117 EKPFKCTVCDHACSQSAKLKKHMKIH 142
E+PFKC C + + L H+++H
Sbjct: 10 ERPFKCNECGKGFGRRSHLAGHLRLH 35
>pdb|1SRK|A Chain A, Solution Structure Of The Third Zinc Finger Domain Of
Fog-1
Length = 35
Score = 28.1 bits (61), Expect = 8.0, Method: Composition-based stats.
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 115 TGEKPFKCTVCDHACSQSAKLKKHMKIH 142
+G++PF C +C A + A +H+K+H
Sbjct: 3 SGKRPFVCRICLSAFTTKANCARHLKVH 30
>pdb|2EN2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
598- 626) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 27.7 bits (60), Expect = 8.5, Method: Composition-based stats.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKP 119
EK +CE CG +F L+AH HTG P
Sbjct: 9 EKPYKCETCGARFVQVAHLRAHVLIHTGSGP 39
Score = 27.7 bits (60), Expect = 9.1, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 117 EKPFKCTVCDHACSQSAKLKKHMKIH 142
EKP+KC C Q A L+ H+ IH
Sbjct: 9 EKPYKCETCGARFVQVAHLRAHVLIH 34
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.126 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,779,840
Number of Sequences: 62578
Number of extensions: 300264
Number of successful extensions: 1549
Number of sequences better than 100.0: 190
Number of HSP's better than 100.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 652
Number of HSP's gapped (non-prelim): 816
length of query: 343
length of database: 14,973,337
effective HSP length: 100
effective length of query: 243
effective length of database: 8,715,537
effective search space: 2117875491
effective search space used: 2117875491
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)