RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5202
(343 letters)
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex;
1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Length = 190
Score = 121 bits (307), Expect = 1e-33
Identities = 58/176 (32%), Positives = 74/176 (42%), Gaps = 40/176 (22%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKPFKCTVCDHACSQSAKLKKHMKIHDEDGDK 148
EK C CGK F + L H+R HTGEKP+KC C + S L +H + H G+K
Sbjct: 19 EKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHT--GEK 76
Query: 149 EDREEGPSASSLAAAAAAAALNLCLPNSHMKKESRRNDTCEFCGKVFKNCSNLTVHRRSH 208
P C CGK F +NL H+R+H
Sbjct: 77 ------PY------------------------------KCPECGKSFSQRANLRAHQRTH 100
Query: 209 TGEKPYKCELCSYACAQSSKLTRHMKTHGRLGKDVYRCRFCEMPFSVPSTLEKHMR 264
TGEKPY C C + +Q + L H +TH G+ Y+C C FS L H R
Sbjct: 101 TGEKPYACPECGKSFSQLAHLRAHQRTH--TGEKPYKCPECGKSFSREDNLHTHQR 154
Score = 121 bits (305), Expect = 3e-33
Identities = 59/176 (33%), Positives = 77/176 (43%), Gaps = 40/176 (22%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKPFKCTVCDHACSQSAKLKKHMKIHDEDGDK 148
EK +C CGK F + L H+R HTGEKP+KC C + SQ A L+ H + H G+K
Sbjct: 47 EKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHT--GEK 104
Query: 149 EDREEGPSASSLAAAAAAAALNLCLPNSHMKKESRRNDTCEFCGKVFKNCSNLTVHRRSH 208
P C CGK F ++L H+R+H
Sbjct: 105 ------PY------------------------------ACPECGKSFSQLAHLRAHQRTH 128
Query: 209 TGEKPYKCELCSYACAQSSKLTRHMKTHGRLGKDVYRCRFCEMPFSVPSTLEKHMR 264
TGEKPYKC C + ++ L H +TH G+ Y+C C FS L H R
Sbjct: 129 TGEKPYKCPECGKSFSREDNLHTHQRTH--TGEKPYKCPECGKSFSRRDALNVHQR 182
Score = 111 bits (281), Expect = 7e-30
Identities = 51/148 (34%), Positives = 65/148 (43%), Gaps = 38/148 (25%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKPFKCTVCDHACSQSAKLKKHMKIHDEDGDK 148
EK +C CGK F L+AH+R HTGEKP+ C C + SQ A L+ H + H G+K
Sbjct: 75 EKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHT--GEK 132
Query: 149 EDREEGPSASSLAAAAAAAALNLCLPNSHMKKESRRNDTCEFCGKVFKNCSNLTVHRRSH 208
P C CGK F NL H+R+H
Sbjct: 133 ------PY------------------------------KCPECGKSFSREDNLHTHQRTH 156
Query: 209 TGEKPYKCELCSYACAQSSKLTRHMKTH 236
TGEKPYKC C + ++ L H +TH
Sbjct: 157 TGEKPYKCPECGKSFSRRDALNVHQRTH 184
Score = 107 bits (271), Expect = 2e-28
Identities = 48/164 (29%), Positives = 66/164 (40%), Gaps = 40/164 (24%)
Query: 101 FKYENTLQAHRRNHTGEKPFKCTVCDHACSQSAKLKKHMKIHDEDGDKEDREEGPSASSL 160
++ A GEKP+ C C + S+S L +H + H G+K P
Sbjct: 3 EFGSSSSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHT--GEK------PY---- 50
Query: 161 AAAAAAAALNLCLPNSHMKKESRRNDTCEFCGKVFKNCSNLTVHRRSHTGEKPYKCELCS 220
C CGK F + +LT H+R+HTGEKPYKC C
Sbjct: 51 --------------------------KCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECG 84
Query: 221 YACAQSSKLTRHMKTHGRLGKDVYRCRFCEMPFSVPSTLEKHMR 264
+ +Q + L H +TH G+ Y C C FS + L H R
Sbjct: 85 KSFSQRANLRAHQRTH--TGEKPYACPECGKSFSQLAHLRAHQR 126
Score = 87.1 bits (217), Expect = 1e-20
Identities = 40/125 (32%), Positives = 50/125 (40%), Gaps = 38/125 (30%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKPFKCTVCDHACSQSAKLKKHMKIHDEDGDK 148
EK C CGK F L+AH+R HTGEKP+KC C + S+ L H + H G+K
Sbjct: 103 EKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTH--TGEK 160
Query: 149 EDREEGPSASSLAAAAAAAALNLCLPNSHMKKESRRNDTCEFCGKVFKNCSNLTVHRRSH 208
P C CGK F L VH+R+H
Sbjct: 161 ------PY------------------------------KCPECGKSFSRRDALNVHQRTH 184
Query: 209 TGEKP 213
TG+K
Sbjct: 185 TGKKT 189
>1tf6_A Protein (transcription factor IIIA); complex (transcription
regulation/DNA), RNA polymerase III, transcription
initiation, zinc finger protein; HET: DNA; 3.10A
{Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Length = 190
Score = 118 bits (298), Expect = 2e-32
Identities = 51/184 (27%), Positives = 65/184 (35%), Gaps = 42/184 (22%)
Query: 89 EKNKECE--FCGKKFKYENTLQAHRRNHTGEKPFKCT--VCDHACSQSAKLKKHMKIHDE 144
EK C+ C K F + L H HTGEK F C CD + A +KKH
Sbjct: 40 EKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFH- 98
Query: 145 DGDKEDREEGPSASSLAAAAAAAALNLCLPNSHMKKESRRNDTCEFCGKVFKNCSNLTVH 204
K C E CGK FK + L VH
Sbjct: 99 -NIKICVYV------------------C--------------HFENCGKAFKKHNQLKVH 125
Query: 205 RRSHTGEKPYKC--ELCSYACAQSSKLTRHMKTHGRLGKDVYRCRFCEMPFSVPSTLEKH 262
+ SHT + PY+C E C + S+L RH K H G + C + KH
Sbjct: 126 QFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVH--AGYPCKKDDSCSFVGKTWTLYLKH 183
Query: 263 MRKC 266
+ +C
Sbjct: 184 VAEC 187
Score = 108 bits (271), Expect = 2e-28
Identities = 47/188 (25%), Positives = 65/188 (34%), Gaps = 52/188 (27%)
Query: 89 EKNKECEF--CGKKFKYENTLQAHRRNHTGEKPFKCT--VCDHACSQSAKLKKHMKIHDE 144
K C F CG + LQAH HTGEKPF C C+ + L +H H
Sbjct: 10 YKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTH-- 67
Query: 145 DGDKEDREEGPSASSLAAAAAAAALNLCLPNSHMKKESRRNDTCE--FCGKVFKNCSNLT 202
G+K N TC+ C F +N+
Sbjct: 68 TGEK------------------------------------NFTCDSDGCDLRFTTKANMK 91
Query: 203 VHRRSHTGEK--PYKCEL--CSYACAQSSKLTRHMKTHGRLGKDVYRC--RFCEMPFSVP 256
H K Y C C A + ++L H +H + Y C C+ FS+P
Sbjct: 92 KHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSH--TQQLPYECPHEGCDKRFSLP 149
Query: 257 STLEKHMR 264
S L++H +
Sbjct: 150 SRLKRHEK 157
Score = 98.8 bits (247), Expect = 5e-25
Identities = 35/164 (21%), Positives = 56/164 (34%), Gaps = 46/164 (28%)
Query: 109 AHRRNHTGEKPFKCTV--CDHACSQSAKLKKHMKIHDEDGDK--EDREEGPSASSLAAAA 164
+ K + C+ C A +++ KL+ H+ H G+K +EEG
Sbjct: 2 GEKALPVVYKRYICSFADCGAAYNKNWKLQAHLCKHT--GEKPFPCKEEG---------- 49
Query: 165 AAAALNLCLPNSHMKKESRRNDTCEFCGKVFKNCSNLTVHRRSHTGEKPYKCE--LCSYA 222
C K F + +LT H +HTGEK + C+ C
Sbjct: 50 --------------------------CEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLR 83
Query: 223 CAQSSKLTRHMKTHGRLGKDVYRCRF--CEMPFSVPSTLEKHMR 264
+ + +H + VY C F C F + L+ H
Sbjct: 84 FTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQF 127
Score = 64.5 bits (158), Expect = 1e-12
Identities = 29/128 (22%), Positives = 42/128 (32%), Gaps = 45/128 (35%)
Query: 89 EKNK--ECEF--CGKKFKYENTLQAHRRNHTGEKPFKCT--VCDHACSQSAKLKKHMKIH 142
K C F CGK FK N L+ H+ +HT + P++C CD S ++LK+H K+H
Sbjct: 100 IKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVH 159
Query: 143 DEDGDKEDREEGPSASSLAAAAAAAALNLCLPNSHMKKESRRNDTCEFCGKVFKNCSNLT 202
G + + C V K +
Sbjct: 160 --AGYPCKK------------------------------------DDSCSFVGKTWTLYL 181
Query: 203 VH-RRSHT 209
H H
Sbjct: 182 KHVAECHQ 189
Score = 55.3 bits (134), Expect = 2e-09
Identities = 15/59 (25%), Positives = 22/59 (37%), Gaps = 3/59 (5%)
Query: 89 EKNKEC--EFCGKKFKYENTLQAHRRNHTGEKPFKCTVCDHACSQSAKLKKHMK-IHDE 144
+ EC E C K+F + L+ H + H G K C KH+ H +
Sbjct: 132 QLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAECHQD 190
Score = 26.8 bits (60), Expect = 8.2
Identities = 7/32 (21%), Positives = 11/32 (34%), Gaps = 2/32 (6%)
Query: 84 TTSQEEKNKECEFCGKKFKYENTLQAHRRNHT 115
+K+ C F GK + L+ H
Sbjct: 160 AGYPCKKDDSCSFVGKTWT--LYLKHVAECHQ 189
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 155
Score = 116 bits (292), Expect = 7e-32
Identities = 49/191 (25%), Positives = 69/191 (36%), Gaps = 55/191 (28%)
Query: 89 EKNKECEFCGKKFKYENTLQAH---RRNHTGEKPFKCTVCDHAC-----SQSAKLKKHMK 140
E + + C ++F + L H H K F C + L HM+
Sbjct: 1 ETDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMR 60
Query: 141 IHDEDGDKEDREEGPSASSLAAAAAAAALNLCLPNSHMKKESRRNDTCEF--CGKVFKNC 198
H G+K P+ C F C K +
Sbjct: 61 RHT--GEK-------------------------PH-----------KCTFEGCRKSYSRL 82
Query: 199 SNLTVHRRSHTGEKPYKCE--LCSYACAQSSKLTRHMK-THGRLGKDVYRCRF--CEMPF 253
NL H RSHTGEKPY CE CS A + +S +H TH + Y C+ C +
Sbjct: 83 ENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTH--SNEKPYVCKLPGCTKRY 140
Query: 254 SVPSTLEKHMR 264
+ PS+L KH++
Sbjct: 141 TDPSSLRKHVK 151
Score = 100 bits (251), Expect = 5e-26
Identities = 48/160 (30%), Positives = 63/160 (39%), Gaps = 50/160 (31%)
Query: 89 EKNKECEFCG-----KKFKYENTLQAHRRNHTGEKPFKCTV--CDHACSQSAKLKKHMKI 141
K C + G + FK + L H R HTGEKP KCT C + S+ LK H++
Sbjct: 32 RKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRS 91
Query: 142 HDEDGDKEDREEGPSASSLAAAAAAAALNLCLPNSHMKKESRRNDTCEF--CGKVFKNCS 199
H G+K P CE C K F N S
Sbjct: 92 HT--GEK-------------------------PY-----------MCEHEGCSKAFSNAS 113
Query: 200 NLTVH-RRSHTGEKPYKCEL--CSYACAQSSKLTRHMKTH 236
+ H R+H+ EKPY C+L C+ S L +H+KT
Sbjct: 114 DRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTV 153
Score = 63.4 bits (155), Expect = 2e-12
Identities = 31/129 (24%), Positives = 45/129 (34%), Gaps = 45/129 (34%)
Query: 89 EKNKECEF--CGKKFKYENTLQAHRRNHTGEKPFKCT--VCDHACSQSAKLKKHMK-IHD 143
EK +C F C K + L+ H R+HTGEKP+ C C A S ++ KH H
Sbjct: 65 EKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTH- 123
Query: 144 EDGDKEDREEGPSASSLAAAAAAAALNLCLPNSHMKKESRRNDTCEF--CGKVFKNCSNL 201
+K P C+ C K + + S+L
Sbjct: 124 -SNEK------PY------------------------------VCKLPGCTKRYTDPSSL 146
Query: 202 TVHRRSHTG 210
H ++ G
Sbjct: 147 RKHVKTVHG 155
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 111 bits (279), Expect = 2e-30
Identities = 44/154 (28%), Positives = 63/154 (40%), Gaps = 44/154 (28%)
Query: 89 EKNKECE--FCGKKFKYENTLQAHRRNHTGEKPFKCTV--CDHACSQSAKLKKHMKIHDE 144
++ C C K++ + LQ H R HTGEKP++C C+ S+S +LK+H + H
Sbjct: 4 KRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHT- 62
Query: 145 DGDKEDREEGPSASSLAAAAAAAALNLCLPNSHMKKESRRNDTCEFCGKVFKNCSNLTVH 204
G K P C+ C + F +L H
Sbjct: 63 -GVK-------------------------PF-----------QCKTCQRKFSRSDHLKTH 85
Query: 205 RRSHTGEKPYKCEL--CSYACAQSSKLTRHMKTH 236
R+HTGEKP+ C C A+S +L RH H
Sbjct: 86 TRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 99.5 bits (249), Expect = 5e-26
Identities = 36/156 (23%), Positives = 60/156 (38%), Gaps = 46/156 (29%)
Query: 115 TGEKPFKCT--VCDHACSQSAKLKKHMKIHDEDGDKEDREEGPSASSLAAAAAAAALNLC 172
+ ++PF C C+ + + L+ H + H G+K
Sbjct: 2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHT--GEK------------------------ 35
Query: 173 LPNSHMKKESRRNDTCEF--CGKVFKNCSNLTVHRRSHTGEKPYKCELCSYACAQSSKLT 230
P C+F C + F L H+R HTG KP++C+ C ++S L
Sbjct: 36 -P-----------YQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLK 83
Query: 231 RHMKTHGRLGKDVYRCRF--CEMPFSVPSTLEKHMR 264
H +TH G+ + CR+ C+ F+ L +H
Sbjct: 84 THTRTH--TGEKPFSCRWPSCQKKFARSDELVRHHN 117
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Length = 155
Score = 108 bits (273), Expect = 4e-29
Identities = 37/172 (21%), Positives = 56/172 (32%), Gaps = 35/172 (20%)
Query: 97 CGKKFKYENTLQAHRRNHTGEKPFKCTVCDHACSQSAKLKKHMKIHDEDGDKEDREEGPS 156
G + + + + CD S +L H+ + ++
Sbjct: 3 SGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEH--VGGPEQNN--- 57
Query: 157 ASSLAAAAAAAALNLCLPNSHMKKESRRNDTCEFCGKVFKNCSNLTVHRRSHTGEKPYKC 216
+ C GK FK L H R HTGEKP+ C
Sbjct: 58 ------------------------HVCYWEECPREGKSFKAKYKLVNHIRVHTGEKPFPC 93
Query: 217 --ELCSYACAQSSKLTRHMKTHGRLGKDVYRCRF--CEMPFSVPSTLEKHMR 264
C A+S L H +TH G+ ++C F C+ F+ S +KHM
Sbjct: 94 PFPGCGKIFARSENLKIHKRTH--TGEKPFKCEFEGCDRRFANSSDRKKHMH 143
Score = 104 bits (262), Expect = 1e-27
Identities = 39/161 (24%), Positives = 57/161 (35%), Gaps = 51/161 (31%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKPFK---------CTVCDHACSQSAKLKKHM 139
+ ++ + C + F + L H P + C + KL H+
Sbjct: 23 QLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHI 82
Query: 140 KIHDEDGDKEDREEGPSASSLAAAAAAAALNLCLPNSHMKKESRRNDTCEF--CGKVFKN 197
++H G+K P C F CGK+F
Sbjct: 83 RVHT--GEK-------------------------PF-----------PCPFPGCGKIFAR 104
Query: 198 CSNLTVHRRSHTGEKPYKCEL--CSYACAQSSKLTRHMKTH 236
NL +H+R+HTGEKP+KCE C A SS +HM H
Sbjct: 105 SENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVH 145
Score = 85.8 bits (213), Expect = 2e-20
Identities = 37/137 (27%), Positives = 47/137 (34%), Gaps = 42/137 (30%)
Query: 84 TTSQEEKNKECEFCGKKFKYENTLQAHRRNHTGEKPFKCTV--CDHACSQSAKLKKHMKI 141
+ +EC GK FK + L H R HTGEKPF C C ++S LK H +
Sbjct: 55 QNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRT 114
Query: 142 HDEDGDKEDREEGPSASSLAAAAAAAALNLCLPNSHMKKESRRNDTCEF--CGKVFKNCS 199
H G+K P CEF C + F N S
Sbjct: 115 H--TGEK------PF------------------------------KCEFEGCDRRFANSS 136
Query: 200 NLTVHRRSHTGEKPYKC 216
+ H HT +K
Sbjct: 137 DRKKHMHVHTSDKSGPS 153
Score = 43.0 bits (102), Expect = 2e-05
Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 89 EKNKECEF--CGKKFKYENTLQAHRRNHTGEKPFKCT 123
EK +CEF C ++F + + H HT +K +
Sbjct: 118 EKPFKCEFEGCDRRFANSSDRKKHMHVHTSDKSGPSS 154
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 104 bits (263), Expect = 4e-28
Identities = 45/152 (29%), Positives = 55/152 (36%), Gaps = 42/152 (27%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKPFKCTVCDHACSQSAKLKKHMK---IHDED 145
EC C KKF + L+ H R HTGEKPF+C C + L +H ++
Sbjct: 5 SSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMN--- 61
Query: 146 GDKEDREEGPSASSLAAAAAAAALNLCLPNSHMKKESRRNDTCEFCGKVFKNCSNLTVHR 205
R E TC C + F+ L +H
Sbjct: 62 -----RSEQVF------------------------------TCSVCQETFRRRMELRLHM 86
Query: 206 RSHTGEKPYKCELCSYACAQSSKLTRHM-KTH 236
SHTGE PYKC CS Q L HM K H
Sbjct: 87 VSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLH 118
Score = 94.1 bits (235), Expect = 6e-24
Identities = 33/155 (21%), Positives = 48/155 (30%), Gaps = 43/155 (27%)
Query: 114 HTGEKPFKCTVCDHACSQSAKLKKHMKIHDEDGDKEDREEGPSASSLAAAAAAAALNLCL 173
+G +C C LK H + H G+K P
Sbjct: 2 SSGSSGVECPTCHKKFLSKYYLKVHNRKHT--GEK------PF----------------- 36
Query: 174 PNSHMKKESRRNDTCEFCGKVFKNCSNLTVHRRS---HTGEKPYKCELCSYACAQSSKLT 230
C CGK + NL H + E+ + C +C + +L
Sbjct: 37 -------------ECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELR 83
Query: 231 RHMKTHGRLGKDVYRCRFCEMPFSVPSTLEKHMRK 265
HM +H G+ Y+C C F L+ HM K
Sbjct: 84 LHMVSH--TGEMPYKCSSCSQQFMQKKDLQSHMIK 116
Score = 74.8 bits (185), Expect = 6e-17
Identities = 27/128 (21%), Positives = 40/128 (31%), Gaps = 42/128 (32%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRN---HTGEKPFKCTVCDHACSQSAKLKKHMKIHDED 145
EK EC CGK + + L H + E+ F C+VC + +L+ HM H
Sbjct: 33 EKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHMVSH--T 90
Query: 146 GDKEDREEGPSASSLAAAAAAAALNLCLPNSHMKKESRRNDTCEFCGKVFKNCSNLTVH- 204
G+ P C C + F +L H
Sbjct: 91 GEM------PY------------------------------KCSSCSQQFMQKKDLQSHM 114
Query: 205 RRSHTGEK 212
+ H+G
Sbjct: 115 IKLHSGPS 122
Score = 56.4 bits (137), Expect = 3e-10
Identities = 11/61 (18%), Positives = 20/61 (32%), Gaps = 2/61 (3%)
Query: 208 HTGEKPYKCELCSYACAQSSKLTRHMKTHGRLGKDVYRCRFCEMPFSVPSTLEKHMRKCV 267
+G +C C L H + H G+ + C C + L +H +
Sbjct: 2 SSGSSGVECPTCHKKFLSKYYLKVHNRKH--TGEKPFECPKCGKCYFRKENLLEHEARNC 59
Query: 268 V 268
+
Sbjct: 60 M 60
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation,
initiator element, zinc finger protein, DNA- protein
recognition; HET: DNA; 2.50A {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Length = 124
Score = 103 bits (260), Expect = 1e-27
Identities = 42/153 (27%), Positives = 59/153 (38%), Gaps = 41/153 (26%)
Query: 88 EEKNKECEF--CGKKFKYENTLQAHRRNHTGEKPFKCTVCDHACSQSAKLKKHMKIHDED 145
E + C C K F+ + ++ H H G + C C A +S+KLK+H +H
Sbjct: 2 EPRTIACPHKGCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHT-- 58
Query: 146 GDKEDREEGPSASSLAAAAAAAALNLCLPNSHMKKESRRNDTCEFCGKVFKNCSNLTVHR 205
G+K P + CGK F NL H
Sbjct: 59 GEK-------------------------PFQCTFEG---------CGKRFSLDFNLRTHV 84
Query: 206 RSHTGEKPYKCEL--CSYACAQSSKLTRHMKTH 236
R HTG++PY C C+ AQS+ L H+ TH
Sbjct: 85 RIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 117
Score = 89.9 bits (224), Expect = 2e-22
Identities = 33/154 (21%), Positives = 49/154 (31%), Gaps = 47/154 (30%)
Query: 117 EKPFKCTV--CDHACSQSAKLKKHMKIHDEDGDKEDREEGPSASSLAAAAAAAALNLCLP 174
+ C C ++ ++KH+ H
Sbjct: 3 PRTIACPHKGCTKMFRDNSAMRKHLHTHGP------------------------------ 32
Query: 175 NSHMKKESRRNDTCEFCGKVFKNCSNLTVHRRSHTGEKPYKCEL--CSYACAQSSKLTRH 232
R C CGK F S L H+ HTGEKP++C C + L H
Sbjct: 33 ---------RVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTH 83
Query: 233 MKTHGRLGKDVYRCRF--CEMPFSVPSTLEKHMR 264
++ H G Y C F C F+ + L+ H+
Sbjct: 84 VRIH--TGDRPYVCPFDGCNKKFAQSTNLKSHIL 115
Score = 86.0 bits (214), Expect = 6e-21
Identities = 33/129 (25%), Positives = 45/129 (34%), Gaps = 38/129 (29%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKPFKCTV--CDHACSQSAKLKKHMKIHDEDG 146
+ C CGK F + L+ H+ HTGEKPF+CT C S L+ H++IH G
Sbjct: 32 PRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIH--TG 89
Query: 147 DKEDREEGPSASSLAAAAAAAALNLCLPNSHMKKESRRNDTCEFCGKVFKNCSNLTVHRR 206
D+ P C K F +NL H
Sbjct: 90 DR-------------------------PYVCPFDG---------CNKKFAQSTNLKSHIL 115
Query: 207 SHTGEKPYK 215
+H K +
Sbjct: 116 THAKAKNNQ 124
Score = 77.9 bits (193), Expect = 5e-18
Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 13/94 (13%)
Query: 187 TCEFCGKVFKNCSNLTVHRRSHTGEKPYKCELCSYACAQSSKLTRHMKTHGRLGKDVYRC 246
+ C K+F++ S + H +H G + + C C A +SSKL RH H G+ ++C
Sbjct: 9 PHKGCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVH--TGEKPFQC 65
Query: 247 RF--CEMPFSVPSTLEKHMR--------KCVVNQ 270
F C FS+ L H+R C +
Sbjct: 66 TFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDG 99
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein,
DNA- binding, transcription, C2H2-type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 102 bits (257), Expect = 2e-27
Identities = 39/128 (30%), Positives = 54/128 (42%), Gaps = 38/128 (29%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKPFKCTVCDHACSQSAKLKKHMKIHDEDGDK 148
+CE CGK F ++ L+ H R HTG KP+KC CD+A + S+ L KH++IH ++
Sbjct: 6 SGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIH--SDER 63
Query: 149 EDREEGPSASSLAAAAAAAALNLCLPNSHMKKESRRNDTCEFCGKVFKNCSNLTVHRRSH 208
P C+ C +N S LTVH RSH
Sbjct: 64 ------PF------------------------------KCQICPYASRNSSQLTVHLRSH 87
Query: 209 TGEKPYKC 216
TG+
Sbjct: 88 TGDSGPSS 95
Score = 100 bits (252), Expect = 1e-26
Identities = 35/123 (28%), Positives = 49/123 (39%), Gaps = 38/123 (30%)
Query: 114 HTGEKPFKCTVCDHACSQSAKLKKHMKIHDEDGDKEDREEGPSASSLAAAAAAAALNLCL 173
P KC VC S+ KLK HM+ H G K P
Sbjct: 3 SGSSGPHKCEVCGKCFSRKDKLKTHMRCHT--GVK------PY----------------- 37
Query: 174 PNSHMKKESRRNDTCEFCGKVFKNCSNLTVHRRSHTGEKPYKCELCSYACAQSSKLTRHM 233
C+ C + S+L H R H+ E+P+KC++C YA SS+LT H+
Sbjct: 38 -------------KCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVHL 84
Query: 234 KTH 236
++H
Sbjct: 85 RSH 87
Score = 91.7 bits (229), Expect = 2e-23
Identities = 32/77 (41%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKPYKCELCSYACAQSSKLTRHMKTHGRLGKDVYRCR 247
CE CGK F L H R HTG KPYKC+ C YA A SS L +H++ H + ++C+
Sbjct: 11 CEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIH--SDERPFKCQ 68
Query: 248 FCEMPFSVPSTLEKHMR 264
C S L H+R
Sbjct: 69 ICPYASRNSSQLTVHLR 85
Score = 64.4 bits (158), Expect = 2e-13
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 207 SHTGEKPYKCELCSYACAQSSKLTRHMKTHGRLGKDVYRCRFCEMPFSVPSTLEKHMR 264
S P+KCE+C ++ KL HM+ H G Y+C+ C+ + S+L KH+R
Sbjct: 2 SSGSSGPHKCEVCGKCFSRKDKLKTHMRCH--TGVKPYKCKTCDYAAADSSSLNKHLR 57
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.12.1.1
Length = 106
Score = 102 bits (256), Expect = 3e-27
Identities = 30/131 (22%), Positives = 42/131 (32%), Gaps = 38/131 (29%)
Query: 106 TLQAHRRNHTGEKPFKCTVCDHACSQSAKLKKHMKIHDEDGDKEDREEGPSASSLAAAAA 165
R +K F C C ++S L H + H ++ P
Sbjct: 4 GSSGGRLPSKTKKEFICKFCGRHFTKSYNLLIHERTHT--DER------PY--------- 46
Query: 166 AAALNLCLPNSHMKKESRRNDTCEFCGKVFKNCSNLTVHRRSHTGEKPYKCELCSYACAQ 225
TC+ C K F+ +L HR H+ EKP+KC+ C Q
Sbjct: 47 ---------------------TCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQ 85
Query: 226 SSKLTRHMKTH 236
S L H H
Sbjct: 86 SRTLAVHKTLH 96
Score = 99.0 bits (248), Expect = 5e-26
Identities = 31/128 (24%), Positives = 42/128 (32%), Gaps = 38/128 (29%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKPFKCTVCDHACSQSAKLKKHMKIHDEDGDK 148
+K C+FCG+ F L H R HT E+P+ C +C A + L+ H IH +K
Sbjct: 15 KKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIH--SKEK 72
Query: 149 EDREEGPSASSLAAAAAAAALNLCLPNSHMKKESRRNDTCEFCGKVFKNCSNLTVHRRSH 208
P C+ CGK F L VH+ H
Sbjct: 73 ------PF------------------------------KCQECGKGFCQSRTLAVHKTLH 96
Query: 209 TGEKPYKC 216
Sbjct: 97 MQTSSPTA 104
Score = 87.1 bits (217), Expect = 1e-21
Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKPYKCELCSYACAQSSKLTRHMKTHGRLGKDVYRCR 247
C+FCG+ F NL +H R+HT E+PY C++C A + L H H + ++C+
Sbjct: 20 CKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIH--SKEKPFKCQ 77
Query: 248 FCEMPFSVPSTLEKHMR 264
C F TL H
Sbjct: 78 ECGKGFCQSRTLAVHKT 94
Score = 71.7 bits (177), Expect = 6e-16
Identities = 16/66 (24%), Positives = 23/66 (34%), Gaps = 2/66 (3%)
Query: 199 SNLTVHRRSHTGEKPYKCELCSYACAQSSKLTRHMKTHGRLGKDVYRCRFCEMPFSVPST 258
S + R +K + C+ C +S L H +TH + Y C C F
Sbjct: 3 SGSSGGRLPSKTKKEFICKFCGRHFTKSYNLLIHERTH--TDERPYTCDICHKAFRRQDH 60
Query: 259 LEKHMR 264
L H
Sbjct: 61 LRDHRY 66
Score = 50.5 bits (122), Expect = 2e-08
Identities = 11/35 (31%), Positives = 14/35 (40%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKPFKCT 123
EK +C+ CGK F TL H+ H
Sbjct: 71 EKPFKCQECGKGFCQSRTLAVHKTLHMQTSSPTAA 105
Score = 32.8 bits (76), Expect = 0.034
Identities = 10/39 (25%), Positives = 14/39 (35%), Gaps = 2/39 (5%)
Query: 226 SSKLTRHMKTHGRLGKDVYRCRFCEMPFSVPSTLEKHMR 264
SS + K + C+FC F+ L H R
Sbjct: 2 SSGSSGGRLPSK--TKKEFICKFCGRHFTKSYNLLIHER 38
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB
domain containing protein 22B, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 110
Score = 97.1 bits (243), Expect = 3e-25
Identities = 31/142 (21%), Positives = 44/142 (30%), Gaps = 41/142 (28%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKPFKCTVCDHACSQSAKLKKHMKIHDEDGDK 148
+K C+ CGK F +++ H H G +P+ C VC L HMKIH G K
Sbjct: 8 DKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH--TGIK 64
Query: 149 EDREEGPSASSLAAAAAAAALNLCLPNSHMKKESRRNDTCEFCGKVFKNCSNLTVHRRSH 208
P C C K F + HR
Sbjct: 65 ------PY------------------------------ECNICAKRFMWRDSF--HRHVT 86
Query: 209 TGEKPYKCELCSYACAQSSKLT 230
+ K Y+ ++S +
Sbjct: 87 SCTKSYEAAKAEQNTTEASGPS 108
Score = 86.7 bits (216), Expect = 2e-21
Identities = 30/148 (20%), Positives = 48/148 (32%), Gaps = 43/148 (29%)
Query: 112 RNHTGEKPFKCTVCDHACSQSAKLKKHMKIHDEDGDKEDREEGPSASSLAAAAAAAALNL 171
+G+K + C C + + ++ +HM +H G + P
Sbjct: 3 SGSSGDKLYPCQ-CGKSFTHKSQRDRHMSMHL--GLR------PY--------------- 38
Query: 172 CLPNSHMKKESRRNDTCEFCGKVFKNCSNLTVHRRSHTGEKPYKCELCSYACAQSSKLTR 231
C CGK FK +L H + HTG KPY+C +C+ R
Sbjct: 39 ---------------GCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSFHR 83
Query: 232 HMKTHGRLGKDVYRCRFCEMPFSVPSTL 259
H+ + Y E + S
Sbjct: 84 HVTS----CTKSYEAAKAEQNTTEASGP 107
Score = 77.9 bits (193), Expect = 4e-18
Identities = 24/76 (31%), Positives = 31/76 (40%), Gaps = 3/76 (3%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKPYKCELCSYACAQSSKLTRHMKTHGRLGKDVYRCR 247
C+ CGK F + S H H G +PY C +C L HMK H G Y C
Sbjct: 13 CQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH--TGIKPYECN 69
Query: 248 FCEMPFSVPSTLEKHM 263
C F + +H+
Sbjct: 70 ICAKRFMWRDSFHRHV 85
Score = 61.3 bits (150), Expect = 4e-12
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
Query: 206 RSHTGEKPYKCELCSYACAQSSKLTRHMKTHGRLGKDVYRCRFCEMPFSVPSTLEKHMR 264
+G+K Y C+ C + S+ RHM H LG Y C C F + L HM+
Sbjct: 3 SGSSGDKLYPCQ-CGKSFTHKSQRDRHMSMH--LGLRPYGCGVCGKKFKMKHHLVGHMK 58
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 91.4 bits (228), Expect = 3e-23
Identities = 30/80 (37%), Positives = 49/80 (61%), Gaps = 2/80 (2%)
Query: 187 TCEFCGKVFKNCSNLTVHRRSHTGEKPYKCELCSYACAQSSKLTRHMKTH-GRLGKDVYR 245
CE CGK+F++ +L H+ SH+GEKPY C +C + +++ H+++H G +GK Y
Sbjct: 9 ACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKP-YI 67
Query: 246 CRFCEMPFSVPSTLEKHMRK 265
C+ C FS P L H+++
Sbjct: 68 CQSCGKGFSRPDHLNGHIKQ 87
Score = 87.9 bits (219), Expect = 5e-22
Identities = 28/126 (22%), Positives = 39/126 (30%), Gaps = 41/126 (32%)
Query: 114 HTGEKPFKCTVCDHACSQSAKLKKHMKIHDEDGDKEDREEGPSASSLAAAAAAAALNLCL 173
+G C +C L +H H G+K P
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRHKLSH--SGEK------PY----------------- 36
Query: 174 PNSHMKKESRRNDTCEFCGKVFKNCSNLTVHRRSHTGE--KPYKCELCSYACAQSSKLTR 231
+C CG FK ++ H RSH G KPY C+ C ++ L
Sbjct: 37 -------------SCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNG 83
Query: 232 HMK-TH 236
H+K H
Sbjct: 84 HIKQVH 89
Score = 86.4 bits (215), Expect = 2e-21
Identities = 30/125 (24%), Positives = 45/125 (36%), Gaps = 37/125 (29%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKPFKCTVCDHACSQSAKLKKHMKIHDEDGDK 148
CE CGK F+ L H+ +H+GEKP+ C VC + ++ H++ HD K
Sbjct: 5 SSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGK 64
Query: 149 EDREEGPSASSLAAAAAAAALNLCLPNSHMKKESRRNDTCEFCGKVFKNCSNLTVH-RRS 207
P C+ CGK F +L H ++
Sbjct: 65 ------PY------------------------------ICQSCGKGFSRPDHLNGHIKQV 88
Query: 208 HTGEK 212
H+G
Sbjct: 89 HSGPS 93
Score = 61.7 bits (151), Expect = 2e-12
Identities = 15/57 (26%), Positives = 22/57 (38%), Gaps = 2/57 (3%)
Query: 208 HTGEKPYKCELCSYACAQSSKLTRHMKTHGRLGKDVYRCRFCEMPFSVPSTLEKHMR 264
+G CE+C L RH +H G+ Y C C + F + H+R
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRHKLSH--SGEKPYSCPVCGLRFKRKDRMSYHVR 56
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A {Mus
musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A
1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A*
1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 90.6 bits (226), Expect = 4e-23
Identities = 37/122 (30%), Positives = 50/122 (40%), Gaps = 40/122 (32%)
Query: 117 EKPFKCTV--CDHACSQSAKLKKHMKIHDEDGDKEDREEGPSASSLAAAAAAAALNLCLP 174
E+P+ C V CD SQS L +H++IH G K P
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHT--GQK-------------------------P 34
Query: 175 NSHMKKESRRNDTCEFCGKVFKNCSNLTVHRRSHTGEKPYKCELCSYACAQSSKLTRHMK 234
C C + F +LT H R+HTGEKP+ C++C A+S + RH K
Sbjct: 35 F-----------QCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTK 83
Query: 235 TH 236
H
Sbjct: 84 IH 85
Score = 87.5 bits (218), Expect = 5e-22
Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Query: 191 CGKVFKNCSNLTVHRRSHTGEKPYKCELCSYACAQSSKLTRHMKTHGRLGKDVYRCRFCE 250
C + F +LT H R HTG+KP++C +C ++S LT H++TH G+ + C C
Sbjct: 12 CDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH--TGEKPFACDICG 69
Query: 251 MPFSVPSTLEKHMR 264
F+ ++H +
Sbjct: 70 RKFARSDERKRHTK 83
Score = 82.9 bits (206), Expect = 4e-20
Identities = 30/126 (23%), Positives = 45/126 (35%), Gaps = 40/126 (31%)
Query: 89 EKNKECEF--CGKKFKYENTLQAHRRNHTGEKPFKCTVCDHACSQSAKLKKHMKIHDEDG 146
E+ C C ++F +L H R HTG+KPF+C +C S+S L H++ H G
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH--TG 59
Query: 147 DKEDREEGPSASSLAAAAAAAALNLCLPNSHMKKESRRNDTCEFCGKVFKNCSNLTVHRR 206
+K P C+ CG+ F H +
Sbjct: 60 EK------PF------------------------------ACDICGRKFARSDERKRHTK 83
Query: 207 SHTGEK 212
H +K
Sbjct: 84 IHLRQK 89
Score = 54.8 bits (133), Expect = 5e-10
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 211 EKPYKCEL--CSYACAQSSKLTRHMKTHGRLGKDVYRCRFCEMPFSVPSTLEKHMR 264
E+PY C + C +QS LTRH++ H G+ ++CR C FS L H+R
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIH--TGQKPFQCRICMRNFSRSDHLTTHIR 55
>2j7j_A Transcription factor IIIA; zinc finger module, alternative
initiation, nuclear protein, phosphorylation,
hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus
laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B
2hgh_A
Length = 85
Score = 88.1 bits (219), Expect = 4e-22
Identities = 28/82 (34%), Positives = 38/82 (46%), Gaps = 4/82 (4%)
Query: 187 TCEFCGKVFKNCSNLTVHRRSHTGEKPYKC--ELCSYACAQSSKLTRHMKTHGRLGKDVY 244
E CGK FK + L VH+ SHT + PY+C E C + S+L RH K H G
Sbjct: 5 HFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVH--AGYPCK 62
Query: 245 RCRFCEMPFSVPSTLEKHMRKC 266
+ C + KH+ +C
Sbjct: 63 KDDSCSFVGKTWTLYLKHVAEC 84
Score = 63.4 bits (155), Expect = 4e-13
Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 4/54 (7%)
Query: 93 ECEF--CGKKFKYENTLQAHRRNHTGEKPFKCTV--CDHACSQSAKLKKHMKIH 142
C F CGK FK N L+ H+ +HT + P++C CD S ++LK+H K+H
Sbjct: 3 VCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVH 56
Score = 61.1 bits (149), Expect = 2e-12
Identities = 14/49 (28%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
Query: 189 EFCGKVFKNCSNLTVHRRSHTGEKPYKCELCSYACAQSSKLTRHMK-TH 236
E C K F S L H + H G K + CS+ + +H+ H
Sbjct: 37 EGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAECH 85
Score = 53.8 bits (130), Expect = 8e-10
Identities = 14/54 (25%), Positives = 20/54 (37%), Gaps = 2/54 (3%)
Query: 89 EKNKEC--EFCGKKFKYENTLQAHRRNHTGEKPFKCTVCDHACSQSAKLKKHMK 140
+ EC E C K+F + L+ H + H G K C KH+
Sbjct: 29 QLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVA 82
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine
zipper, X-RAY crystallography, structure-based design,
zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1
g.37.1.1 PDB: 1xf7_A
Length = 88
Score = 86.8 bits (216), Expect = 1e-21
Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 3/78 (3%)
Query: 187 TCEFCGKVFKNCSNLTVHRRSHTGEKPYKCELCSYACAQSSKLTRHMKTHGRLGKDVYRC 246
C C + F +LT H R+HTGEKP+ C++C A+S + RH
Sbjct: 5 QCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQH--ILP-ILE 61
Query: 247 RFCEMPFSVPSTLEKHMR 264
E S LE +
Sbjct: 62 DKVEELLSKNYHLENEVA 79
Score = 79.5 bits (197), Expect = 5e-19
Identities = 22/123 (17%), Positives = 36/123 (29%), Gaps = 42/123 (34%)
Query: 93 ECEFCGKKFKYENTLQAHRRNHTGEKPFKCTVCDHACSQSAKLKKHMKIHDEDGDKEDRE 152
+C C + F + L H R HTGEKPF C +C ++S + K+H I
Sbjct: 5 QCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHI-------- 56
Query: 153 EGPSASSLAAAAAAAALNLCLPNSHMKKESRRNDTCEFCGKVFKNCSNLTVHR---RSHT 209
+ ++ +L +
Sbjct: 57 -------------------------------LPILEDKVEELLSKNYHLENEVARLKKLV 85
Query: 210 GEK 212
GE+
Sbjct: 86 GER 88
Score = 73.7 bits (182), Expect = 7e-17
Identities = 22/122 (18%), Positives = 35/122 (28%), Gaps = 42/122 (34%)
Query: 118 KPFKCTVCDHACSQSAKLKKHMKIHDEDGDKEDREEGPSASSLAAAAAAAALNLCLPNSH 177
KPF+C +C S+S L H++ H G+K P
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTH--TGEK------PF--------------------- 32
Query: 178 MKKESRRNDTCEFCGKVFKNCSNLTVHRRSHTGEKPYKCELCSYACAQSSKLTRH---MK 234
C+ CG+ F HR P + +++ L +K
Sbjct: 33 ---------ACDICGRKFARSDERKRHRDIQH-ILPILEDKVEELLSKNYHLENEVARLK 82
Query: 235 TH 236
Sbjct: 83 KL 84
Score = 57.9 bits (141), Expect = 3e-11
Identities = 13/57 (22%), Positives = 22/57 (38%), Gaps = 4/57 (7%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKPFKCTVCDHACSQSAKLKKH---MKIH 142
EK C+ CG+KF + + HR P + S++ L+ +K
Sbjct: 29 EKPFACDICGRKFARSDERKRHRDIQH-ILPILEDKVEELLSKNYHLENEVARLKKL 84
Score = 53.3 bits (129), Expect = 2e-09
Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 212 KPYKCELCSYACAQSSKLTRHMKTHGRLGKDVYRCRFCEMPFSVPSTLEKHMR 264
KP++C +C ++S LT H++TH G+ + C C F+ ++H
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTH--TGEKPFACDICGRKFARSDERKRHRD 52
Score = 33.6 bits (78), Expect = 0.015
Identities = 4/33 (12%), Positives = 8/33 (24%), Gaps = 3/33 (9%)
Query: 89 EKNKECEFCGKKFKYENTL---QAHRRNHTGEK 118
+ + L A + GE+
Sbjct: 56 ILPILEDKVEELLSKNYHLENEVARLKKLVGER 88
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND,
transcription factor, kruppel-like factor, GC-box
promoter elements, structural genomics; NMR {Homo
sapiens}
Length = 100
Score = 85.8 bits (213), Expect = 3e-21
Identities = 36/86 (41%), Positives = 48/86 (55%), Gaps = 6/86 (6%)
Query: 183 RRNDTCEF--CGKVFKNCSNLTVHRRSHTGEKPYKC--ELCSYACAQSSKLTRHMKTHGR 238
RR C++ C KV+ S+L H R+HTGEKPYKC E C + A+S +LTRH + H
Sbjct: 13 RRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKH-- 70
Query: 239 LGKDVYRCRFCEMPFSVPSTLEKHMR 264
G ++C C FS L HM+
Sbjct: 71 TGAKPFQCGVCNRSFSRSDHLALHMK 96
Score = 77.7 bits (192), Expect = 4e-18
Identities = 35/137 (25%), Positives = 49/137 (35%), Gaps = 40/137 (29%)
Query: 100 KFKYENTLQAHRRNHTGEKPFKCTVCDHACSQSAKLKKHMKIHDEDGDKEDREEGPSASS 159
RR H + P C ++S+ LK H++ H G+K P
Sbjct: 2 SSGSSGPDLEKRRIHYCDYPG----CTKVYTKSSHLKAHLRTHT--GEK------PYK-- 47
Query: 160 LAAAAAAAALNLCLPNSHMKKESRRNDTCEFCGKVFKNCSNLTVHRRSHTGEKPYKCELC 219
C T E C F LT H R HTG KP++C +C
Sbjct: 48 ------------C--------------TWEGCDWRFARSDELTRHYRKHTGAKPFQCGVC 81
Query: 220 SYACAQSSKLTRHMKTH 236
+ + ++S L HMK H
Sbjct: 82 NRSFSRSDHLALHMKRH 98
Score = 65.7 bits (161), Expect = 8e-14
Identities = 22/48 (45%), Positives = 28/48 (58%)
Query: 95 EFCGKKFKYENTLQAHRRNHTGEKPFKCTVCDHACSQSAKLKKHMKIH 142
E C +F + L H R HTG KPF+C VC+ + S+S L HMK H
Sbjct: 51 EGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRH 98
Score = 63.8 bits (156), Expect = 4e-13
Identities = 30/131 (22%), Positives = 49/131 (37%), Gaps = 42/131 (32%)
Query: 83 STTSQEEKNKECEF--CGKKFKYENTLQAHRRNHTGEKPFKCTV--CDHACSQSAKLKKH 138
++ + C++ C K + + L+AH R HTGEKP+KCT CD ++S +L +H
Sbjct: 7 GPDLEKRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRH 66
Query: 139 MKIHDEDGDKEDREEGPSASSLAAAAAAAALNLCLPNSHMKKESRRNDTCEFCGKVFKNC 198
+ H G K + C C + F
Sbjct: 67 YRKH--TGAKPFQ------------------------------------CGVCNRSFSRS 88
Query: 199 SNLTVHRRSHT 209
+L +H + H
Sbjct: 89 DHLALHMKRHQ 99
Score = 47.6 bits (114), Expect = 2e-07
Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 8/73 (10%)
Query: 195 FKNCSNLTVHRRSHTGEKPYKCELCSYACAQSSKLTRHMKTHGRLGKDVYRCRF--CEMP 252
+ RR H + P C+ +SS L H++TH G+ Y+C + C+
Sbjct: 3 SGSSGPDLEKRRIHYCDYPG----CTKVYTKSSHLKAHLRTH--TGEKPYKCTWEGCDWR 56
Query: 253 FSVPSTLEKHMRK 265
F+ L +H RK
Sbjct: 57 FARSDELTRHYRK 69
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain,
protein-DNA complex, DNA-B metal-binding, nucleus; HET:
DNA; NMR {Rattus norvegicus}
Length = 82
Score = 85.2 bits (212), Expect = 3e-21
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKPYKCELCSYACAQSSKLTRHMKTHGRLGKDVYRCR 247
C+ CGK FK S L+ H H+ +PY C+ C Q S + +H H G+ ++C+
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIH--TGEKPHKCQ 61
Query: 248 FCEMPFSVPSTLEKHMR 264
C FS S L H R
Sbjct: 62 VCGKAFSQSSNLITHSR 78
Score = 79.8 bits (198), Expect = 4e-19
Identities = 35/118 (29%), Positives = 45/118 (38%), Gaps = 38/118 (32%)
Query: 93 ECEFCGKKFKYENTLQAHRRNHTGEKPFKCTVCDHACSQSAKLKKHMKIHDEDGDKEDRE 152
+C+ CGK FK +TL H H+ +P+ C C Q + +KKH IH G+K
Sbjct: 3 DCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIH--TGEK---- 56
Query: 153 EGPSASSLAAAAAAAALNLCLPNSHMKKESRRNDTCEFCGKVFKNCSNLTVHRRSHTG 210
P C+ CGK F SNL H R HTG
Sbjct: 57 --PH------------------------------KCQVCGKAFSQSSNLITHSRKHTG 82
Score = 76.7 bits (190), Expect = 4e-18
Identities = 32/117 (27%), Positives = 47/117 (40%), Gaps = 38/117 (32%)
Query: 120 FKCTVCDHACSQSAKLKKHMKIHDEDGDKEDREEGPSASSLAAAAAAAALNLCLPNSHMK 179
F C +C + +S+ L H+ IH + P
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHS--DTR------PY----------------------- 30
Query: 180 KESRRNDTCEFCGKVFKNCSNLTVHRRSHTGEKPYKCELCSYACAQSSKLTRHMKTH 236
C++CGK F S++ H HTGEKP+KC++C A +QSS L H + H
Sbjct: 31 -------PCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRKH 80
Score = 69.0 bits (170), Expect = 3e-15
Identities = 23/54 (42%), Positives = 33/54 (61%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKPFKCTVCDHACSQSAKLKKHMKIH 142
+ C++CGK+F ++ ++ H HTGEKP KC VC A SQS+ L H + H
Sbjct: 27 TRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRKH 80
Score = 41.3 bits (98), Expect = 2e-05
Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 214 YKCELCSYACAQSSKLTRHMKTHGRLGKDVYRCRFCEMPFSVPSTLEKHMR 264
+ C++C + +SS L+ H+ H Y C++C F S ++KH
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIH--SDTRPYPCQYCGKRFHQKSDMKKHTF 50
Score = 33.9 bits (79), Expect = 0.008
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTG 116
EK +C+ CGK F + L H R HTG
Sbjct: 55 EKPHKCQVCGKAFSQSSNLITHSRKHTG 82
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 86
Score = 84.5 bits (210), Expect = 7e-21
Identities = 22/114 (19%), Positives = 33/114 (28%), Gaps = 34/114 (29%)
Query: 106 TLQAHRRNHTGEKPFKCTVCDHACSQSAKLKKHMKIHDEDGDKEDREEGPSASSLAAAAA 165
+ + R HTGEKP+ C+ CD Q L H K + + +
Sbjct: 2 SSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHD----PNFVPAAF--------- 48
Query: 166 AAALNLCLPNSHMKKESRRNDTCEFCGKVFKNCSNLTVHRRSHTGEKPYKCELC 219
C CGK F + + H + G + E
Sbjct: 49 ---------------------VCSKCGKTFTRRNTMARHADNCAGPDGVEGENS 81
Score = 68.7 bits (169), Expect = 5e-15
Identities = 19/67 (28%), Positives = 27/67 (40%), Gaps = 2/67 (2%)
Query: 200 NLTVHRRSHTGEKPYKCELCSYACAQSSKLTRHMKTH--GRLGKDVYRCRFCEMPFSVPS 257
+ R+HTGEKPY C C Q L H K + + C C F+ +
Sbjct: 2 SSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRN 61
Query: 258 TLEKHMR 264
T+ +H
Sbjct: 62 TMARHAD 68
Score = 66.4 bits (163), Expect = 3e-14
Identities = 12/67 (17%), Positives = 20/67 (29%), Gaps = 6/67 (8%)
Query: 187 TCEFCGKVFKNCSNLTVHRRSHTGE----KPYKCELCSYACAQSSKLTRHMKTHGRLGKD 242
C C K F+ L +H + + + C C + + + RH G D
Sbjct: 17 ACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNC--AGPD 74
Query: 243 VYRCRFC 249
Sbjct: 75 GVEGENS 81
Score = 61.0 bits (149), Expect = 2e-12
Identities = 12/58 (20%), Positives = 21/58 (36%), Gaps = 4/58 (6%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGE----KPFKCTVCDHACSQSAKLKKHMKIH 142
EK C C K F+ + L H + + F C+ C ++ + +H
Sbjct: 13 EKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNC 70
Score = 52.1 bits (126), Expect = 4e-09
Identities = 10/33 (30%), Positives = 12/33 (36%)
Query: 93 ECEFCGKKFKYENTLQAHRRNHTGEKPFKCTVC 125
C CGK F NT+ H N G +
Sbjct: 49 VCSKCGKTFTRRNTMARHADNCAGPDGVEGENS 81
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding,
transcription, metal-binding, DNA, protein, nucleus,
activator; 1.70A {Mus musculus} PDB: 2wbu_A
Length = 89
Score = 83.0 bits (206), Expect = 3e-20
Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Query: 179 KKESRRNDTCEFCGKVFKNCSNLTVHRRSHTGEKPYKC--ELCSYACAQSSKLTRHMKTH 236
K+ + CGK + S+L H R+HTGEKPY C + C + A+S +LTRH + H
Sbjct: 1 KRTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKH 60
Query: 237 GRLGKDVYRCRFCEMPFSVPSTLEKHMR 264
G ++C+ C+ FS L HM+
Sbjct: 61 --TGHRPFQCQKCDRAFSRSDHLALHMK 86
Score = 78.3 bits (194), Expect = 1e-18
Identities = 31/123 (25%), Positives = 44/123 (35%), Gaps = 36/123 (29%)
Query: 114 HTGEKPFKCTVCDHACSQSAKLKKHMKIHDEDGDKEDREEGPSASSLAAAAAAAALNLCL 173
T C ++S+ LK H++ H G+K P C
Sbjct: 2 RTATHTCDYAGCGKTYTKSSHLKAHLRTHT--GEK------PYH--------------C- 38
Query: 174 PNSHMKKESRRNDTCEFCGKVFKNCSNLTVHRRSHTGEKPYKCELCSYACAQSSKLTRHM 233
+ CG F LT H R HTG +P++C+ C A ++S L HM
Sbjct: 39 -------------DWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHM 85
Query: 234 KTH 236
K H
Sbjct: 86 KRH 88
Score = 67.2 bits (165), Expect = 2e-14
Identities = 26/56 (46%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 89 EKNKEC--EFCGKKFKYENTLQAHRRNHTGEKPFKCTVCDHACSQSAKLKKHMKIH 142
EK C + CG KF + L H R HTG +PF+C CD A S+S L HMK H
Sbjct: 33 EKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRH 88
Score = 60.6 bits (148), Expect = 4e-12
Identities = 26/122 (21%), Positives = 42/122 (34%), Gaps = 40/122 (32%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKPFKCTV--CDHACSQSAKLKKHMKIHDEDG 146
+ CGK + + L+AH R HTGEKP+ C C ++S +L +H + H G
Sbjct: 5 THTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKH--TG 62
Query: 147 DKEDREEGPSASSLAAAAAAAALNLCLPNSHMKKESRRNDTCEFCGKVFKNCSNLTVHRR 206
+ C+ C + F +L +H +
Sbjct: 63 HR------------------------------------PFQCQKCDRAFSRSDHLALHMK 86
Query: 207 SH 208
H
Sbjct: 87 RH 88
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 77
Score = 82.6 bits (205), Expect = 3e-20
Identities = 22/110 (20%), Positives = 35/110 (31%), Gaps = 37/110 (33%)
Query: 106 TLQAHRRNHTGEKPFKCTVCDHACSQSAKLKKHMKIHDEDGDKEDREEGPSASSLAAAAA 165
+ + R H+GEKP++C +C +QS +K H+ +
Sbjct: 2 SSGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVA------KF--------- 46
Query: 166 AAALNLCLPNSHMKKESRRNDTCEFCGKVFKNCSNLTVH-RRSHTGEKPY 214
C C V S+L VH R+ H+ P
Sbjct: 47 ---------------------HCPHCDTVIARKSDLGVHLRKQHSYSGPS 75
Score = 80.3 bits (199), Expect = 2e-19
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Query: 200 NLTVHRRSHTGEKPYKCELCSYACAQSSKLTRHMKTH-GRLGKDVYRCRFCEMPFSVPST 258
+ R+H+GEKPY+C +C QS + H+ + C C+ + S
Sbjct: 2 SSGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVA-KFHCPHCDTVIARKSD 60
Query: 259 LEKHMRK 265
L H+RK
Sbjct: 61 LGVHLRK 67
Score = 69.1 bits (170), Expect = 3e-15
Identities = 11/52 (21%), Positives = 17/52 (32%), Gaps = 2/52 (3%)
Query: 187 TCEFCGKVFKNCSNLTVHRRSHTGE--KPYKCELCSYACAQSSKLTRHMKTH 236
C C F + +H E + C C A+ S L H++
Sbjct: 17 ECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQ 68
Score = 66.4 bits (163), Expect = 2e-14
Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 3/57 (5%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGE--KPFKCTVCDHACSQSAKLKKHM-KIH 142
EK EC C +F T++ H E F C CD ++ + L H+ K H
Sbjct: 13 EKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQH 69
Score = 39.8 bits (94), Expect = 6e-05
Identities = 7/37 (18%), Positives = 13/37 (35%), Gaps = 1/37 (2%)
Query: 85 TSQEEKNKECEFCGKKFKYENTLQAH-RRNHTGEKPF 120
++ C C ++ L H R+ H+ P
Sbjct: 39 HTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYSGPS 75
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 80.2 bits (199), Expect = 2e-19
Identities = 17/49 (34%), Positives = 26/49 (53%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKPYKCELCSYACAQSSKLTRHMKTH 236
C C + + L +H R H ++P+KC CS+ Q S L++HMK
Sbjct: 12 CSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKF 60
Score = 72.9 bits (180), Expect = 9e-17
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 206 RSHTGEKPYKCELCSYACAQSSKLTRHMKTHGRLGKDVYRCRFCEMPFSVPSTLEKHMRK 265
S + P KC CSY+C+ + L H + H ++C +C PS L KHM+K
Sbjct: 2 SSGSSGHPEKCSECSYSCSSKAALRIHERIH--CTDRPFKCNYCSFDTKQPSNLSKHMKK 59
Score = 71.4 bits (176), Expect = 3e-16
Identities = 20/66 (30%), Positives = 27/66 (40%), Gaps = 2/66 (3%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKPFKCTVCDHACSQSAKLKKHMKIHDEDGDK 148
++C C + L+ H R H ++PFKC C Q + L KHMK GD
Sbjct: 7 GHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKF--HGDM 64
Query: 149 EDREEG 154
G
Sbjct: 65 SGPSSG 70
Score = 71.0 bits (175), Expect = 4e-16
Identities = 21/105 (20%), Positives = 33/105 (31%), Gaps = 38/105 (36%)
Query: 112 RNHTGEKPFKCTVCDHACSQSAKLKKHMKIHDEDGDKEDREEGPSASSLAAAAAAAALNL 171
+ + P KC+ C ++CS A L+ H +IH D+ P
Sbjct: 2 SSGSSGHPEKCSECSYSCSSKAALRIHERIH--CTDR------PF--------------- 38
Query: 172 CLPNSHMKKESRRNDTCEFCGKVFKNCSNLTVHRRSHTGEKPYKC 216
C +C K SNL+ H + G+
Sbjct: 39 ---------------KCNYCSFDTKQPSNLSKHMKKFHGDMSGPS 68
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 74
Score = 78.3 bits (194), Expect = 1e-18
Identities = 26/108 (24%), Positives = 33/108 (30%), Gaps = 38/108 (35%)
Query: 107 LQAHRRNHTGEKPFKCTVCDHACSQSAKLKKHMKIHDEDGDKEDREEGPSASSLAAAAAA 166
H +KP+KC C + L H +H G+K R
Sbjct: 5 HHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVH--TGEKPYR--------------- 47
Query: 167 AALNLCLPNSHMKKESRRNDTCEFCGKVFKNCSNLTVHRRSHTGEKPY 214
C CG F +NL H R H+GEKPY
Sbjct: 48 ---------------------CNICGAQFNRPANLKTHTRIHSGEKPY 74
Score = 77.5 bits (192), Expect = 2e-18
Identities = 18/49 (36%), Positives = 26/49 (53%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKPYKCELCSYACAQSSKLTRHMKTH 236
C+ C F+ NL H+ HTGEKPY+C +C + + L H + H
Sbjct: 20 CDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIH 68
Score = 74.4 bits (184), Expect = 2e-17
Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 2/66 (3%)
Query: 199 SNLTVHRRSHTGEKPYKCELCSYACAQSSKLTRHMKTHGRLGKDVYRCRFCEMPFSVPST 258
+ H +KPYKC+ C + L H H G+ YRC C F+ P+
Sbjct: 3 HHHHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVH--TGEKPYRCNICGAQFNRPAN 60
Query: 259 LEKHMR 264
L+ H R
Sbjct: 61 LKTHTR 66
Score = 71.7 bits (177), Expect = 2e-16
Identities = 21/54 (38%), Positives = 34/54 (62%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKPFKCTVCDHACSQSAKLKKHMKIH 142
+K +C+ C F+Y+ L +H+ HTGEKP++C +C ++ A LK H +IH
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIH 68
Score = 43.2 bits (103), Expect = 3e-06
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKPF 120
EK C CG +F L+ H R H+GEKP+
Sbjct: 43 EKPYRCNICGAQFNRPANLKTHTRIHSGEKPY 74
Score = 33.2 bits (77), Expect = 0.011
Identities = 7/39 (17%), Positives = 9/39 (23%), Gaps = 2/39 (5%)
Query: 226 SSKLTRHMKTHGRLGKDVYRCRFCEMPFSVPSTLEKHMR 264
H Y+C C+ F L H
Sbjct: 2 GHHHHHHSHMTH--SDKPYKCDRCQASFRYKGNLASHKT 38
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN
domain containing protein 16, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 76.7 bits (190), Expect = 4e-18
Identities = 25/110 (22%), Positives = 34/110 (30%), Gaps = 38/110 (34%)
Query: 106 TLQAHRRNHTGEKPFKCTVCDHACSQSAKLKKHMKIHDEDGDKEDREEGPSASSLAAAAA 165
+ + +KC C + S S+ L KH + H G+K P
Sbjct: 5 SSGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTH--TGEK------PY--------- 47
Query: 166 AAALNLCLPNSHMKKESRRNDTCEFCGKVFKNCSNLTVHRRSHTGEKPYK 215
C+ CGK F S+L H R HTG P
Sbjct: 48 ---------------------KCDECGKAFIQRSHLIGHHRVHTGSGPSS 76
Score = 74.0 bits (183), Expect = 4e-17
Identities = 26/49 (53%), Positives = 33/49 (67%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKPYKCELCSYACAQSSKLTRHMKTH 236
C+ CGK F + S+L+ HRR+HTGEKPYKC+ C A Q S L H + H
Sbjct: 21 CDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVH 69
Score = 68.6 bits (169), Expect = 4e-15
Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
Query: 198 CSNLTVHRRSHTGEKPYKCELCSYACAQSSKLTRHMKTHGRLGKDVYRCRFCEMPFSVPS 257
+ + YKC+ C + + SS L++H +TH G+ Y+C C F S
Sbjct: 3 SGSSGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTH--TGEKPYKCDECGKAFIQRS 60
Query: 258 TLEKHMR 264
L H R
Sbjct: 61 HLIGHHR 67
Score = 64.8 bits (159), Expect = 1e-13
Identities = 23/54 (42%), Positives = 32/54 (59%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKPFKCTVCDHACSQSAKLKKHMKIH 142
+ +C+ CGK F + + L HRR HTGEKP+KC C A Q + L H ++H
Sbjct: 16 RRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVH 69
Score = 44.0 bits (105), Expect = 2e-06
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKPFK 121
EK +C+ CGK F + L H R HTG P
Sbjct: 44 EKPYKCDECGKAFIQRSHLIGHHRVHTGSGPSS 76
Score = 34.7 bits (81), Expect = 0.004
Identities = 12/41 (29%), Positives = 14/41 (34%), Gaps = 2/41 (4%)
Query: 224 AQSSKLTRHMKTHGRLGKDVYRCRFCEMPFSVPSTLEKHMR 264
S R + Y+C C FS S L KH R
Sbjct: 1 GSSGSSGRSEWQQR--ERRRYKCDECGKSFSHSSDLSKHRR 39
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 72
Score = 74.0 bits (183), Expect = 3e-17
Identities = 25/49 (51%), Positives = 29/49 (59%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKPYKCELCSYACAQSSKLTRHMKTH 236
C CGK F S L H+R HTGEKPYKC C A +Q+S L H + H
Sbjct: 17 CVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
Score = 74.0 bits (183), Expect = 4e-17
Identities = 27/108 (25%), Positives = 36/108 (33%), Gaps = 38/108 (35%)
Query: 107 LQAHRRNHTGEKPFKCTVCDHACSQSAKLKKHMKIHDEDGDKEDREEGPSASSLAAAAAA 166
H+GEKP+ C C A S+S+ L +H ++H G+K P
Sbjct: 2 SSGSSGIHSGEKPYGCVECGKAFSRSSILVQHQRVH--TGEK------PY---------- 43
Query: 167 AALNLCLPNSHMKKESRRNDTCEFCGKVFKNCSNLTVHRRSHTGEKPY 214
C CGK F S L H+R HT
Sbjct: 44 --------------------KCLECGKAFSQNSGLINHQRIHTSGPSS 71
Score = 68.3 bits (168), Expect = 5e-15
Identities = 26/54 (48%), Positives = 32/54 (59%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKPFKCTVCDHACSQSAKLKKHMKIH 142
EK C CGK F + L H+R HTGEKP+KC C A SQ++ L H +IH
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
Score = 65.2 bits (160), Expect = 6e-14
Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Query: 201 LTVHRRSHTGEKPYKCELCSYACAQSSKLTRHMKTHGRLGKDVYRCRFCEMPFSVPSTLE 260
+ H+GEKPY C C A ++SS L +H + H G+ Y+C C FS S L
Sbjct: 2 SSGSSGIHSGEKPYGCVECGKAFSRSSILVQHQRVH--TGEKPYKCLECGKAFSQNSGLI 59
Query: 261 KHMR 264
H R
Sbjct: 60 NHQR 63
Score = 42.5 bits (101), Expect = 7e-06
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKPF 120
EK +C CGK F + L H+R HT
Sbjct: 40 EKPYKCLECGKAFSQNSGLINHQRIHTSGPSS 71
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces
cerevisiae} SCOP: g.37.1.1 g.37.1.1
Length = 60
Score = 73.7 bits (182), Expect = 4e-17
Identities = 23/50 (46%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKPYKCELCSYACAQSSKLTRHM-KTH 236
CE C + F +L H RSHT EKPY C LC+ A + L RH K H
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIH 54
Score = 64.4 bits (158), Expect = 7e-14
Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 93 ECEFCGKKFKYENTLQAHRRNHTGEKPFKCTVCDHACSQSAKLKKHM-KIH 142
CE C + F + L+ H R+HT EKP+ C +C+ A ++ L +H KIH
Sbjct: 4 VCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIH 54
Score = 45.2 bits (108), Expect = 6e-07
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 212 KPYKCELCSYACAQSSKLTRHMKTHGRLGKDVYRCRFCEMPFSVPSTLEKHMRK 265
+ + CE+C+ A A+ L RH ++H + Y C C F+ L +H +K
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSH--TNEKPYPCGLCNRAFTRRDLLIRHAQK 52
Score = 42.5 bits (101), Expect = 5e-06
Identities = 18/96 (18%), Positives = 28/96 (29%), Gaps = 39/96 (40%)
Query: 118 KPFKCTVCDHACSQSAKLKKHMKIHDEDGDKEDREEGPSASSLAAAAAAAALNLCLPNSH 177
+ F C VC A ++ LK+H + H +K P
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHT--NEK------PY--------------------- 31
Query: 178 MKKESRRNDTCEFCGKVFKNCSNLTVH-RRSHTGEK 212
C C + F L H ++ H+G
Sbjct: 32 ---------PCGLCNRAFTRRDLLIRHAQKIHSGNL 58
Score = 34.4 bits (80), Expect = 0.004
Identities = 9/31 (29%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 89 EKNKECEFCGKKFKYENTLQAH-RRNHTGEK 118
EK C C + F + L H ++ H+G
Sbjct: 28 EKPYPCGLCNRAFTRRDLLIRHAQKIHSGNL 58
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double
helix, transcription/DNA complex; HET: DNA; 2.80A
{Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 71.8 bits (177), Expect = 2e-16
Identities = 13/55 (23%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
Query: 187 TCEFCGKVFKNCSNLTVHRRS--HTGEKPYKCELCSYACAQSSKLTRHMKTHGRL 239
C+ C +V+ + SN H + K Y C C + +T H+K ++
Sbjct: 12 RCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHKI 66
Score = 68.0 bits (167), Expect = 5e-15
Identities = 17/59 (28%), Positives = 26/59 (44%)
Query: 206 RSHTGEKPYKCELCSYACAQSSKLTRHMKTHGRLGKDVYRCRFCEMPFSVPSTLEKHMR 264
+ GE Y+C++CS S RH T + VY C FC F+ + H++
Sbjct: 3 FTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVK 61
Score = 65.7 bits (161), Expect = 3e-14
Identities = 10/56 (17%), Positives = 20/56 (35%), Gaps = 2/56 (3%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRN--HTGEKPFKCTVCDHACSQSAKLKKHMKIH 142
E C+ C + + + + H K + C C ++ + H+KI
Sbjct: 8 EHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKII 63
Score = 53.7 bits (130), Expect = 6e-10
Identities = 15/99 (15%), Positives = 23/99 (23%), Gaps = 36/99 (36%)
Query: 112 RNHTGEKPFKCTVCDHACSQSAKLKKHMKIHDEDGDKEDREEGPSASSLAAAAAAAALNL 171
GE ++C VC + + +H + K
Sbjct: 3 FTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVK------VY--------------- 41
Query: 172 CLPNSHMKKESRRNDTCEFCGKVFKNCSNLTVHRRSHTG 210
C FC K F N+T H +
Sbjct: 42 ---------------PCPFCFKEFTRKDNMTAHVKIIHK 65
Score = 32.1 bits (74), Expect = 0.023
Identities = 8/35 (22%), Positives = 17/35 (48%)
Query: 82 MSTTSQEEKNKECEFCGKKFKYENTLQAHRRNHTG 116
+++ + K C FC K+F ++ + AH +
Sbjct: 31 VTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHK 65
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 70.9 bits (174), Expect = 6e-16
Identities = 12/53 (22%), Positives = 19/53 (35%), Gaps = 3/53 (5%)
Query: 187 TCEFCGKVFKNCSNLTVHRRSHT---GEKPYKCELCSYACAQSSKLTRHMKTH 236
CE CG + ++L H+R H + CE C + + H
Sbjct: 9 QCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKS 61
Score = 70.1 bits (172), Expect = 1e-15
Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Query: 208 HTGEKPYKCELCSYACAQSSKLTRHMKTH-GRLGKDVYRCRFCEMPFSVPSTLEKHMRK 265
+G +CE+C + C Q + L H + H + + C FC F P ++ H K
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSK 60
Score = 68.6 bits (168), Expect = 5e-15
Identities = 19/108 (17%), Positives = 28/108 (25%), Gaps = 37/108 (34%)
Query: 114 HTGEKPFKCTVCDHACSQSAKLKKHMKIH-DEDGDKEDREEGPSASSLAAAAAAAALNLC 172
+G +C +C C Q A L H + H +
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALR----------------------- 38
Query: 173 LPNSHMKKESRRNDTCEFCGKVFKNCSNLTVHRRSHTGEKPYKCELCS 220
CEFCGK F+ ++ HR + S
Sbjct: 39 -------------FPCEFCGKRFEKPDSVAAHRSKSHPALLLAPQESS 73
Score = 67.0 bits (164), Expect = 2e-14
Identities = 12/57 (21%), Positives = 19/57 (33%), Gaps = 3/57 (5%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHT---GEKPFKCTVCDHACSQSAKLKKHMKIH 142
+CE CG + + +L H+R H F C C + + H
Sbjct: 5 SSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKS 61
Score = 39.7 bits (93), Expect = 8e-05
Identities = 10/39 (25%), Positives = 16/39 (41%)
Query: 84 TTSQEEKNKECEFCGKKFKYENTLQAHRRNHTGEKPFKC 122
+ CEFCGK+F+ +++ AHR
Sbjct: 31 AETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLLAP 69
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 79
Score = 70.3 bits (173), Expect = 1e-15
Identities = 18/66 (27%), Positives = 25/66 (37%), Gaps = 5/66 (7%)
Query: 187 TCEFCGKVFKNCSNLTVHRR-SHTGEKPYKCE--LCSYACAQSSKLTRHMKTHGRLGKDV 243
CG++F N L H++ H +K + C C + L HMK H
Sbjct: 11 DFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLH--SDTRD 68
Query: 244 YRCRFC 249
Y C F
Sbjct: 69 YICEFS 74
Score = 69.1 bits (170), Expect = 3e-15
Identities = 20/111 (18%), Positives = 26/111 (23%), Gaps = 43/111 (38%)
Query: 114 HTGEKPFKCTV--CDHACSQSAKLKKHMKI-HDEDGDKEDREEGPSASSLAAAAAAAALN 170
+G C C S L H K H K
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHI--HQK------SF-------------- 39
Query: 171 LCLPNSHMKKESRRNDTCEF--CGKVFKNCSNLTVHRRSHTGEKPYKCELC 219
+C CGK F +L H + H+ + Y CE
Sbjct: 40 ----------------SCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFS 74
Score = 61.8 bits (151), Expect = 1e-12
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 5/59 (8%)
Query: 89 EKNKECEF--CGKKFKYENTLQAHRR-NHTGEKPFKCT--VCDHACSQSAKLKKHMKIH 142
C+F CG+ F L H++ H +K F C C + + LK+HMK+H
Sbjct: 5 SSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLH 63
Score = 50.6 bits (122), Expect = 9e-09
Identities = 10/39 (25%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 89 EKNKECEF--CGKKFKYENTLQAHRRNHTGEKPFKCTVC 125
+K+ C CGK F ++ L+ H + H+ + + C
Sbjct: 36 QKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFS 74
Score = 48.7 bits (117), Expect = 5e-08
Identities = 13/62 (20%), Positives = 23/62 (37%), Gaps = 7/62 (11%)
Query: 208 HTGEKPYKCEL--CSYACAQSSKLTRHMK-THGRLGKDVYRCRF--CEMPFSVPSTLEKH 262
+G C+ C + L H K H + + + C C F+ L++H
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQH--IHQKSFSCPEPACGKSFNFKKHLKEH 59
Query: 263 MR 264
M+
Sbjct: 60 MK 61
>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible
early growth response protein 1, TGFB-inducible early
growth response protein 1; NMR {Homo sapiens}
Length = 72
Score = 65.1 bits (159), Expect = 6e-14
Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 173 LPNSHMKKESRRNDTCEF--CGKVFKNCSNLTVHRRSHTGEKPYKC--ELCSYACAQSSK 228
+ R+ C CGK + S+L H R+HTGEKP+ C + C A+S +
Sbjct: 5 SSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDE 64
Query: 229 LTRHMKTH 236
L+RH +TH
Sbjct: 65 LSRHRRTH 72
Score = 57.4 bits (139), Expect = 3e-11
Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Query: 83 STTSQEEKNKECEF--CGKKFKYENTLQAHRRNHTGEKPFKCTV--CDHACSQSAKLKKH 138
S ++ C CGK + + L+AH R HTGEKPF C+ C+ ++S +L +H
Sbjct: 9 QIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRH 68
Query: 139 MKIH 142
+ H
Sbjct: 69 RRTH 72
Score = 46.6 bits (111), Expect = 2e-07
Identities = 17/71 (23%), Positives = 29/71 (40%), Gaps = 6/71 (8%)
Query: 199 SNLTVHRRSHTGEKPYKC--ELCSYACAQSSKLTRHMKTHGRLGKDVYRCRF--CEMPFS 254
S + + + + + C C +SS L H +TH G+ + C + CE F+
Sbjct: 3 SGSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTH--TGEKPFSCSWKGCERRFA 60
Query: 255 VPSTLEKHMRK 265
L +H R
Sbjct: 61 RSDELSRHRRT 71
Score = 37.0 bits (86), Expect = 7e-04
Identities = 18/105 (17%), Positives = 33/105 (31%), Gaps = 38/105 (36%)
Query: 106 TLQAHRRNHTGEKPFKCTV--CDHACSQSAKLKKHMKIHDEDGDKEDREEGPSASSLAAA 163
+ + + + C+ C +S+ LK H + H G+K P +
Sbjct: 4 GSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTH--TGEK------PFS------ 49
Query: 164 AAAAALNLCLPNSHMKKESRRNDTCEFCGKVFKNCSNLTVHRRSH 208
C + + C + F L+ HRR+H
Sbjct: 50 --------C--------------SWKGCERRFARSDELSRHRRTH 72
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc
finger, dimer, protein-DNA complex, cooperativity,
transcription/DNA complex; 2.35A {Mus musculus} SCOP:
g.37.1.1 g.37.1.1
Length = 73
Score = 64.2 bits (157), Expect = 1e-13
Identities = 20/50 (40%), Positives = 29/50 (58%)
Query: 187 TCEFCGKVFKNCSNLTVHRRSHTGEKPYKCELCSYACAQSSKLTRHMKTH 236
E C + F LT H R HTG+KP++C +C ++S LT H++TH
Sbjct: 23 PVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 63.9 bits (156), Expect = 2e-13
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 89 EKNKEC--EFCGKKFKYENTLQAHRRNHTGEKPFKCTVCDHACSQSAKLKKHMKIH 142
+ C E C ++F + L H R HTG+KPF+C +C S+S L H++ H
Sbjct: 17 MRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 60.0 bits (146), Expect = 4e-12
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 6/68 (8%)
Query: 199 SNLTVHRRSHTGEKPYKC--ELCSYACAQSSKLTRHMKTHGRLGKDVYRCRFCEMPFSVP 256
+NL + +PY C E C ++S +LTRH++ H G+ ++CR C FS
Sbjct: 7 NNLLNYVV--PKMRPYACPVESCDRRFSRSDELTRHIRIH--TGQKPFQCRICMRNFSRS 62
Query: 257 STLEKHMR 264
L H+R
Sbjct: 63 DHLTTHIR 70
Score = 42.3 bits (100), Expect = 9e-06
Identities = 24/107 (22%), Positives = 36/107 (33%), Gaps = 42/107 (39%)
Query: 105 NTLQAHRRNHTGEKPFKCTV--CDHACSQSAKLKKHMKIHDEDGDKEDREEGPSASSLAA 162
N L + +P+ C V CD S+S +L +H++IH G K +
Sbjct: 7 NNLLNYVV--PKMRPYACPVESCDRRFSRSDELTRHIRIH--TGQKPFQ----------- 51
Query: 163 AAAAAALNLCLPNSHMKKESRRNDTCEFCGKVFKNCSNLTVHRRSHT 209
C C + F +LT H R+HT
Sbjct: 52 -------------------------CRICMRNFSRSDHLTTHIRTHT 73
Score = 28.0 bits (63), Expect = 0.86
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHT 115
+K +C C + F + L H R HT
Sbjct: 47 QKPFQCRICMRNFSRSDHLTTHIRTHT 73
Score = 26.1 bits (58), Expect = 3.9
Identities = 10/42 (23%), Positives = 16/42 (38%), Gaps = 6/42 (14%)
Query: 226 SSKLTRHMKTHGRLGKDVYRCR--FCEMPFSVPSTLEKHMRK 265
+ L ++ R Y C C+ FS L +H+R
Sbjct: 6 MNNLLNYVVPKMRP----YACPVESCDRRFSRSDELTRHIRI 43
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 59.6 bits (144), Expect = 3e-12
Identities = 17/42 (40%), Positives = 25/42 (59%)
Query: 179 KKESRRNDTCEFCGKVFKNCSNLTVHRRSHTGEKPYKCELCS 220
+R+ CE CGK+F++ +L H+ SH+GEKPY S
Sbjct: 6 SGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPSS 47
Score = 46.5 bits (110), Expect = 1e-07
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 84 TTSQEEKNKECEFCGKKFKYENTLQAHRRNHTGEKPFKCTVC 125
++ + K CE CGK F+ L H+ +H+GEKP+
Sbjct: 5 SSGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 34.9 bits (80), Expect = 0.002
Identities = 9/31 (29%), Positives = 11/31 (35%)
Query: 206 RSHTGEKPYKCELCSYACAQSSKLTRHMKTH 236
S K CE+C L RH +H
Sbjct: 5 SSGRTRKQVACEICGKIFRDVYHLNRHKLSH 35
Score = 30.7 bits (69), Expect = 0.072
Identities = 6/31 (19%), Positives = 9/31 (29%)
Query: 112 RNHTGEKPFKCTVCDHACSQSAKLKKHMKIH 142
+ K C +C L +H H
Sbjct: 5 SSGRTRKQVACEICGKIFRDVYHLNRHKLSH 35
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 59.4 bits (143), Expect = 2e-11
Identities = 24/114 (21%), Positives = 43/114 (37%), Gaps = 11/114 (9%)
Query: 106 TLQAHRRNHTGEKPFKCTVCDHACSQSAKLKKHMKI--HDEDGDKEDREEGPSASSLAAA 163
+ + + TG F+C C A +L HM H D + E P S
Sbjct: 6 SGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRK 65
Query: 164 AAAAALNLCLPNSHMKKESRRNDTCEFCGKVFKNCSNLTVH--RRSHTGEKPYK 215
+ L K+++++ C +CG F++ +L+VH + H +
Sbjct: 66 RS-------LLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKHYQKVSGP 112
Score = 48.6 bits (115), Expect = 1e-07
Identities = 20/98 (20%), Positives = 30/98 (30%), Gaps = 31/98 (31%)
Query: 199 SNLTVHRRSHTGEKPYKCELCSYACAQSSKLTRHMKTHGRL------------------- 239
S+ ++ TG ++C+ CS A +LT HM G
Sbjct: 5 SSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPR 64
Query: 240 ------------GKDVYRCRFCEMPFSVPSTLEKHMRK 265
+ V +C +C F L HM K
Sbjct: 65 KRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIK 102
Score = 41.3 bits (96), Expect = 6e-05
Identities = 9/57 (15%), Positives = 14/57 (24%)
Query: 84 TTSQEEKNKECEFCGKKFKYENTLQAHRRNHTGEKPFKCTVCDHACSQSAKLKKHMK 140
+ + +L +K KC C H+ L HM
Sbjct: 45 YRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMI 101
Score = 30.1 bits (67), Expect = 0.41
Identities = 14/69 (20%), Positives = 22/69 (31%), Gaps = 3/69 (4%)
Query: 55 KSPTNKIADLSSSTSPSKQEDFQLSYAMSTTSQEEKNKECEFCGKKFKYENTLQAH--RR 112
N D ++ SK L M +K +C +CG F+ L H +
Sbjct: 45 YRDDNHETDNNNPKRWSKPRKRSLL-EMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKT 103
Query: 113 NHTGEKPFK 121
H +
Sbjct: 104 KHYQKVSGP 112
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 57.5 bits (140), Expect = 2e-11
Identities = 16/30 (53%), Positives = 18/30 (60%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKPYKCE 217
C CGK F+ SNLT H+ HTGEKP
Sbjct: 15 CNECGKAFRAHSNLTTHQVIHTGEKPSGPS 44
Score = 52.5 bits (127), Expect = 1e-09
Identities = 16/33 (48%), Positives = 16/33 (48%)
Query: 204 HRRSHTGEKPYKCELCSYACAQSSKLTRHMKTH 236
S TGEKPYKC C A S LT H H
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIH 35
Score = 47.9 bits (115), Expect = 4e-08
Identities = 15/35 (42%), Positives = 20/35 (57%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKPFKCT 123
EK +C CGK F+ + L H+ HTGEKP +
Sbjct: 10 EKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGPS 44
Score = 47.1 bits (113), Expect = 7e-08
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 109 AHRRNHTGEKPFKCTVCDHACSQSAKLKKHMKIH 142
+ + TGEKP+KC C A + L H IH
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIH 35
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 56.8 bits (138), Expect = 3e-11
Identities = 16/29 (55%), Positives = 20/29 (68%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKPYKC 216
C+ C K F+ S+LTVH+R HTGEKP
Sbjct: 15 CDVCHKSFRYGSSLTVHQRIHTGEKPSGP 43
Score = 52.9 bits (128), Expect = 7e-10
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 204 HRRSHTGEKPYKCELCSYACAQSSKLTRHMKTH 236
S TGEKPYKC++C + S LT H + H
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIH 35
Score = 49.8 bits (120), Expect = 1e-08
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 109 AHRRNHTGEKPFKCTVCDHACSQSAKLKKHMKIH 142
+ + TGEKP+KC VC + + L H +IH
Sbjct: 2 SSGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIH 35
Score = 49.8 bits (120), Expect = 1e-08
Identities = 16/35 (45%), Positives = 23/35 (65%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKPFKCT 123
EK +C+ C K F+Y ++L H+R HTGEKP +
Sbjct: 10 EKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGPS 44
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 54
Score = 56.8 bits (138), Expect = 3e-11
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 187 TCEFCGKVFKNCSNLTVH-RRSHTGEKPYKCELC 219
C+ CGK F +L H ++ HT E+P+KC++
Sbjct: 14 ICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVW 47
Score = 51.4 bits (124), Expect = 3e-09
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 88 EEKNKECEFCGKKFKYENTLQAH-RRNHTGEKPFKCTVCDHACSQ 131
K C+ CGK F + L H ++ HT E+P KC V S
Sbjct: 9 VGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS 53
Score = 48.7 bits (117), Expect = 3e-08
Identities = 12/52 (23%), Positives = 21/52 (40%), Gaps = 3/52 (5%)
Query: 204 HRRSHTGEKPYKCELCSYACAQSSKLTRHMK-THGRLGKDVYRCRFCEMPFS 254
S + KPY C+ C ++ L H+K H + ++C+ S
Sbjct: 3 SGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVH--TSERPHKCQVWVSGPS 52
Score = 43.7 bits (104), Expect = 2e-06
Identities = 9/35 (25%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 109 AHRRNHTGEKPFKCTVCDHACSQSAKLKKHMK-IH 142
+ + + KP+ C C S+ L H+K +H
Sbjct: 2 SSGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVH 36
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 56.4 bits (137), Expect = 3e-11
Identities = 14/33 (42%), Positives = 16/33 (48%)
Query: 204 HRRSHTGEKPYKCELCSYACAQSSKLTRHMKTH 236
S GEKPYKCE C Q + L H+ H
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIH 34
Score = 54.1 bits (131), Expect = 2e-10
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 110 HRRNHTGEKPFKCTVCDHACSQSAKLKKHMKIH 142
+ GEKP+KC C Q A L+ H+ IH
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIH 34
Score = 49.4 bits (119), Expect = 1e-08
Identities = 11/27 (40%), Positives = 13/27 (48%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKPY 214
CE CG F ++L H HTG P
Sbjct: 14 CETCGARFVQVAHLRAHVLIHTGSGPS 40
Score = 43.7 bits (104), Expect = 1e-06
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKPF 120
EK +CE CG +F L+AH HTG P
Sbjct: 9 EKPYKCETCGARFVQVAHLRAHVLIHTGSGPS 40
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 56.4 bits (137), Expect = 5e-11
Identities = 15/30 (50%), Positives = 17/30 (56%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKPYKCE 217
C CGK F S+LT H+ HTGEKP
Sbjct: 15 CNECGKAFSVYSSLTTHQVIHTGEKPSGPS 44
Score = 52.5 bits (127), Expect = 1e-09
Identities = 14/33 (42%), Positives = 15/33 (45%)
Query: 204 HRRSHTGEKPYKCELCSYACAQSSKLTRHMKTH 236
S TG KPY C C A + S LT H H
Sbjct: 3 SGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIH 35
Score = 48.3 bits (116), Expect = 3e-08
Identities = 14/34 (41%), Positives = 17/34 (50%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKPFKC 122
K C CGK F ++L H+ HTGEKP
Sbjct: 10 VKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGP 43
Score = 47.5 bits (114), Expect = 6e-08
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 109 AHRRNHTGEKPFKCTVCDHACSQSAKLKKHMKIH 142
+ + TG KP+ C C A S + L H IH
Sbjct: 2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIH 35
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 56.0 bits (136), Expect = 5e-11
Identities = 14/30 (46%), Positives = 15/30 (50%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKPYKCE 217
CE CGK F +L H HTGEKP
Sbjct: 15 CEECGKGFICRRDLYTHHMVHTGEKPSGPS 44
Score = 52.9 bits (128), Expect = 7e-10
Identities = 14/33 (42%), Positives = 14/33 (42%)
Query: 204 HRRSHTGEKPYKCELCSYACAQSSKLTRHMKTH 236
S TGEKPYKCE C L H H
Sbjct: 3 SGSSGTGEKPYKCEECGKGFICRRDLYTHHMVH 35
Score = 48.7 bits (117), Expect = 2e-08
Identities = 16/35 (45%), Positives = 18/35 (51%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKPFKCT 123
EK +CE CGK F L H HTGEKP +
Sbjct: 10 EKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGPS 44
Score = 48.3 bits (116), Expect = 3e-08
Identities = 11/34 (32%), Positives = 15/34 (44%)
Query: 109 AHRRNHTGEKPFKCTVCDHACSQSAKLKKHMKIH 142
+ + TGEKP+KC C L H +H
Sbjct: 2 SSGSSGTGEKPYKCEECGKGFICRRDLYTHHMVH 35
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 56.0 bits (136), Expect = 5e-11
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKPYKC 216
CE CGK + + NL +H++ HTGE+P
Sbjct: 15 CEKCGKGYNSKFNLDMHQKVHTGERPSGP 43
Score = 53.3 bits (129), Expect = 4e-10
Identities = 15/33 (45%), Positives = 15/33 (45%)
Query: 204 HRRSHTGEKPYKCELCSYACAQSSKLTRHMKTH 236
S TGEKPYKCE C L H K H
Sbjct: 3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVH 35
Score = 49.8 bits (120), Expect = 1e-08
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 109 AHRRNHTGEKPFKCTVCDHACSQSAKLKKHMKIH 142
+ + TGEKP+KC C + L H K+H
Sbjct: 2 SSGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVH 35
Score = 47.1 bits (113), Expect = 7e-08
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKPFKCT 123
EK +CE CGK + + L H++ HTGE+P +
Sbjct: 10 EKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGPS 44
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 56.0 bits (136), Expect = 5e-11
Identities = 16/30 (53%), Positives = 18/30 (60%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKPYKCE 217
CE CGK F + S L H+R HTGEKP
Sbjct: 15 CEECGKAFIHDSQLQEHQRIHTGEKPSGPS 44
Score = 52.9 bits (128), Expect = 7e-10
Identities = 15/33 (45%), Positives = 17/33 (51%)
Query: 204 HRRSHTGEKPYKCELCSYACAQSSKLTRHMKTH 236
S TGEKPY CE C A S+L H + H
Sbjct: 3 SGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIH 35
Score = 48.3 bits (116), Expect = 3e-08
Identities = 18/35 (51%), Positives = 23/35 (65%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKPFKCT 123
EK CE CGK F +++ LQ H+R HTGEKP +
Sbjct: 10 EKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGPS 44
Score = 48.3 bits (116), Expect = 3e-08
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 109 AHRRNHTGEKPFKCTVCDHACSQSAKLKKHMKIH 142
+ + TGEKP+ C C A ++L++H +IH
Sbjct: 2 SSGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIH 35
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 55.6 bits (135), Expect = 7e-11
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKPYKC 216
CE CGK + NL +H+R H GEK
Sbjct: 15 CEDCGKGYNRRLNLDMHQRVHMGEKTSGP 43
Score = 51.7 bits (125), Expect = 2e-09
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 204 HRRSHTGEKPYKCELCSYACAQSSKLTRHMKTH 236
S + EKPYKCE C + L H + H
Sbjct: 3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVH 35
Score = 49.0 bits (118), Expect = 2e-08
Identities = 9/34 (26%), Positives = 17/34 (50%)
Query: 109 AHRRNHTGEKPFKCTVCDHACSQSAKLKKHMKIH 142
+ + + EKP+KC C ++ L H ++H
Sbjct: 2 SSGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVH 35
Score = 47.1 bits (113), Expect = 8e-08
Identities = 14/35 (40%), Positives = 18/35 (51%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKPFKCT 123
EK +CE CGK + L H+R H GEK +
Sbjct: 10 EKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGPS 44
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 56.3 bits (135), Expect = 7e-11
Identities = 20/50 (40%), Positives = 27/50 (54%)
Query: 187 TCEFCGKVFKNCSNLTVHRRSHTGEKPYKCELCSYACAQSSKLTRHMKTH 236
CE CG K S L H R+HT +PY C C+++ LT+HMK+
Sbjct: 3 ICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSK 52
Score = 52.4 bits (125), Expect = 1e-09
Identities = 19/50 (38%), Positives = 26/50 (52%)
Query: 93 ECEFCGKKFKYENTLQAHRRNHTGEKPFKCTVCDHACSQSAKLKKHMKIH 142
CE CG + K + L+ H R HT +P+ CT C+ + L KHMK
Sbjct: 3 ICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSK 52
Score = 44.7 bits (105), Expect = 7e-07
Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Query: 214 YKCELCSYACAQSSKLTRHMKTHGRLGKDVYRCRFCEMPFSVPSTLEKHMRK 265
Y CE C + S L +H++TH Y C +C F L KHM+
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTH--TDVRPYHCTYCNFSFKTKGNLTKHMKS 51
Score = 32.8 bits (74), Expect = 0.014
Identities = 8/34 (23%), Positives = 14/34 (41%)
Query: 85 TSQEEKNKECEFCGKKFKYENTLQAHRRNHTGEK 118
T + + C +C FK + L H ++ K
Sbjct: 23 THTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK 56
Score = 31.6 bits (71), Expect = 0.037
Identities = 10/26 (38%), Positives = 12/26 (46%)
Query: 187 TCEFCGKVFKNCSNLTVHRRSHTGEK 212
C +C FK NLT H +S K
Sbjct: 31 HCTYCNFSFKTKGNLTKHMKSKAHSK 56
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 55.6 bits (135), Expect = 8e-11
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 203 VHRRSHTGEKPYKCELCSYACAQSSKLTRHMKTH 236
S TGEKP+KC++C + S+L RH H
Sbjct: 2 SSGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVH 35
Score = 55.6 bits (135), Expect = 9e-11
Identities = 13/30 (43%), Positives = 14/30 (46%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKPYKCE 217
C+ CGK F S L H HT EKP
Sbjct: 15 CDICGKSFCGRSRLNRHSMVHTAEKPSGPS 44
Score = 51.0 bits (123), Expect = 4e-09
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 109 AHRRNHTGEKPFKCTVCDHACSQSAKLKKHMKIH 142
+ + TGEKPFKC +C + ++L +H +H
Sbjct: 2 SSGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVH 35
Score = 48.6 bits (117), Expect = 2e-08
Identities = 14/35 (40%), Positives = 18/35 (51%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKPFKCT 123
EK +C+ CGK F + L H HT EKP +
Sbjct: 10 EKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPS 44
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 55.6 bits (135), Expect = 8e-11
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKPYKCE 217
C CGK F ++L HRR HTG +P
Sbjct: 15 CSECGKAFHRHTHLNEHRRIHTGYRPSGPS 44
Score = 52.9 bits (128), Expect = 8e-10
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 204 HRRSHTGEKPYKCELCSYACAQSSKLTRHMKTH 236
S +GEKPYKC C A + + L H + H
Sbjct: 3 SGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIH 35
Score = 48.6 bits (117), Expect = 2e-08
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 110 HRRNHTGEKPFKCTVCDHACSQSAKLKKHMKIH 142
+ +GEKP+KC+ C A + L +H +IH
Sbjct: 3 SGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIH 35
Score = 47.9 bits (115), Expect = 4e-08
Identities = 15/35 (42%), Positives = 18/35 (51%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKPFKCT 123
EK +C CGK F L HRR HTG +P +
Sbjct: 10 EKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPS 44
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 55.6 bits (135), Expect = 9e-11
Identities = 16/30 (53%), Positives = 20/30 (66%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKPYKCE 217
C CGKVF++ S L+ H+R HTGEKP
Sbjct: 15 CNECGKVFRHNSYLSRHQRIHTGEKPSGPS 44
Score = 52.1 bits (126), Expect = 2e-09
Identities = 15/33 (45%), Positives = 18/33 (54%)
Query: 204 HRRSHTGEKPYKCELCSYACAQSSKLTRHMKTH 236
S TGEKPYKC C +S L+RH + H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIH 35
Score = 48.3 bits (116), Expect = 3e-08
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 110 HRRNHTGEKPFKCTVCDHACSQSAKLKKHMKIH 142
+ TGEKP+KC C ++ L +H +IH
Sbjct: 3 SGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIH 35
Score = 47.5 bits (114), Expect = 6e-08
Identities = 16/35 (45%), Positives = 22/35 (62%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKPFKCT 123
EK +C CGK F++ + L H+R HTGEKP +
Sbjct: 10 EKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPS 44
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 55.6 bits (135), Expect = 9e-11
Identities = 15/34 (44%), Positives = 17/34 (50%)
Query: 203 VHRRSHTGEKPYKCELCSYACAQSSKLTRHMKTH 236
S TGEKPY+C C A S L H +TH
Sbjct: 2 SSGSSGTGEKPYECNECQKAFNTKSNLMVHQRTH 35
Score = 54.8 bits (133), Expect = 2e-10
Identities = 14/29 (48%), Positives = 16/29 (55%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKPYKC 216
C C K F SNL VH+R+HTGE
Sbjct: 15 CNECQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 49.0 bits (118), Expect = 2e-08
Identities = 14/34 (41%), Positives = 17/34 (50%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKPFKC 122
EK EC C K F ++ L H+R HTGE
Sbjct: 10 EKPYECNECQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 48.2 bits (116), Expect = 3e-08
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 109 AHRRNHTGEKPFKCTVCDHACSQSAKLKKHMKIH 142
+ + TGEKP++C C A + + L H + H
Sbjct: 2 SSGSSGTGEKPYECNECQKAFNTKSNLMVHQRTH 35
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 55.2 bits (134), Expect = 1e-10
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKPYKCE 217
C+ C K F + ++LT H+R H+GEKP
Sbjct: 15 CDVCRKAFSHHASLTQHQRVHSGEKPSGPS 44
Score = 53.7 bits (130), Expect = 4e-10
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 203 VHRRSHTGEKPYKCELCSYACAQSSKLTRHMKTH 236
S TGEKPY+C++C A + + LT+H + H
Sbjct: 2 SSGSSGTGEKPYECDVCRKAFSHHASLTQHQRVH 35
Score = 48.7 bits (117), Expect = 2e-08
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKPFKCT 123
EK EC+ C K F + +L H+R H+GEKP +
Sbjct: 10 EKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGPS 44
Score = 48.7 bits (117), Expect = 2e-08
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 110 HRRNHTGEKPFKCTVCDHACSQSAKLKKHMKIH 142
+ TGEKP++C VC A S A L +H ++H
Sbjct: 3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQRVH 35
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 55.2 bits (134), Expect = 1e-10
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKPYKC 216
C+ CGK F+ S+L H H+GE+P
Sbjct: 15 CQVCGKAFRVSSHLVQHHSVHSGERPSGP 43
Score = 52.9 bits (128), Expect = 7e-10
Identities = 16/33 (48%), Positives = 19/33 (57%)
Query: 204 HRRSHTGEKPYKCELCSYACAQSSKLTRHMKTH 236
S TGEKPYKC++C A SS L +H H
Sbjct: 3 SGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVH 35
Score = 50.2 bits (121), Expect = 6e-09
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 110 HRRNHTGEKPFKCTVCDHACSQSAKLKKHMKIH 142
+ TGEKP+KC VC A S+ L +H +H
Sbjct: 3 SGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVH 35
Score = 47.5 bits (114), Expect = 6e-08
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKPFKCT 123
EK +C+ CGK F+ + L H H+GE+P +
Sbjct: 10 EKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGPS 44
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 55.2 bits (134), Expect = 1e-10
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKPYKCE 217
C CGKVF+ S+L H+ HTGEKP
Sbjct: 15 CHECGKVFRRNSHLARHQLIHTGEKPSGPS 44
Score = 52.5 bits (127), Expect = 1e-09
Identities = 15/33 (45%), Positives = 17/33 (51%)
Query: 204 HRRSHTGEKPYKCELCSYACAQSSKLTRHMKTH 236
S TGEKPYKC C ++S L RH H
Sbjct: 3 SGSSGTGEKPYKCHECGKVFRRNSHLARHQLIH 35
Score = 49.0 bits (118), Expect = 2e-08
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 109 AHRRNHTGEKPFKCTVCDHACSQSAKLKKHMKIH 142
+ + TGEKP+KC C +++ L +H IH
Sbjct: 2 SSGSSGTGEKPYKCHECGKVFRRNSHLARHQLIH 35
Score = 46.7 bits (112), Expect = 1e-07
Identities = 15/35 (42%), Positives = 20/35 (57%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKPFKCT 123
EK +C CGK F+ + L H+ HTGEKP +
Sbjct: 10 EKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGPS 44
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 55.2 bits (134), Expect = 1e-10
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKPYKC 216
C+ CGK F S+L H+R HTGEKP
Sbjct: 15 CDVCGKEFSQSSHLQTHQRVHTGEKPSGP 43
Score = 54.1 bits (131), Expect = 3e-10
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 203 VHRRSHTGEKPYKCELCSYACAQSSKLTRHMKTH 236
S GEK YKC++C +QSS L H + H
Sbjct: 2 SSGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVH 35
Score = 51.0 bits (123), Expect = 3e-09
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 110 HRRNHTGEKPFKCTVCDHACSQSAKLKKHMKIH 142
+ GEK +KC VC SQS+ L+ H ++H
Sbjct: 3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVH 35
Score = 48.7 bits (117), Expect = 2e-08
Identities = 17/35 (48%), Positives = 23/35 (65%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKPFKCT 123
EK +C+ CGK+F + LQ H+R HTGEKP +
Sbjct: 10 EKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGPS 44
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 55.2 bits (134), Expect = 1e-10
Identities = 16/29 (55%), Positives = 18/29 (62%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKPYKC 216
C C K F S+LTVH+R HTGEKP
Sbjct: 15 CNECKKTFTQSSSLTVHQRIHTGEKPSGP 43
Score = 51.7 bits (125), Expect = 2e-09
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 204 HRRSHTGEKPYKCELCSYACAQSSKLTRHMKTH 236
S G+K +KC C QSS LT H + H
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIH 35
Score = 49.8 bits (120), Expect = 1e-08
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 109 AHRRNHTGEKPFKCTVCDHACSQSAKLKKHMKIH 142
+ + G+K FKC C +QS+ L H +IH
Sbjct: 2 SSGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIH 35
Score = 47.5 bits (114), Expect = 6e-08
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKPFKCT 123
+K +C C K F ++L H+R HTGEKP +
Sbjct: 10 KKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGPS 44
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Length = 46
Score = 55.2 bits (134), Expect = 1e-10
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKPYKCE 217
C CGKVF S L+ H++ HTGEKP
Sbjct: 15 CNECGKVFSRNSQLSQHQKIHTGEKPSGPS 44
Score = 52.1 bits (126), Expect = 1e-09
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 204 HRRSHTGEKPYKCELCSYACAQSSKLTRHMKTH 236
S TGEK YKC C +++S+L++H K H
Sbjct: 3 SGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIH 35
Score = 48.3 bits (116), Expect = 3e-08
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 110 HRRNHTGEKPFKCTVCDHACSQSAKLKKHMKIH 142
+ TGEK +KC C S++++L +H KIH
Sbjct: 3 SGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIH 35
Score = 46.7 bits (112), Expect = 1e-07
Identities = 15/35 (42%), Positives = 20/35 (57%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKPFKCT 123
EK +C CGK F + L H++ HTGEKP +
Sbjct: 10 EKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPS 44
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 46
Score = 54.9 bits (133), Expect = 1e-10
Identities = 18/29 (62%), Positives = 19/29 (65%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKPYKC 216
C CGK FK S+L HRRSHTGEKP
Sbjct: 15 CIECGKAFKTKSSLICHRRSHTGEKPSGP 43
Score = 52.2 bits (126), Expect = 1e-09
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 204 HRRSHTGEKPYKCELCSYACAQSSKLTRHMKTH 236
S TG++PY+C C A S L H ++H
Sbjct: 3 SGSSGTGQRPYECIECGKAFKTKSSLICHRRSH 35
Score = 49.8 bits (120), Expect = 8e-09
Identities = 17/35 (48%), Positives = 24/35 (68%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKPFKCT 123
++ EC CGK FK +++L HRR+HTGEKP +
Sbjct: 10 QRPYECIECGKAFKTKSSLICHRRSHTGEKPSGPS 44
Score = 46.8 bits (112), Expect = 1e-07
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 110 HRRNHTGEKPFKCTVCDHACSQSAKLKKHMKIH 142
+ TG++P++C C A + L H + H
Sbjct: 3 SGSSGTGQRPYECIECGKAFKTKSSLICHRRSH 35
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 54.8 bits (133), Expect = 1e-10
Identities = 16/30 (53%), Positives = 17/30 (56%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKPYKCE 217
C CGKVF S+L HR HTGEKP
Sbjct: 15 CNECGKVFTQNSHLARHRGIHTGEKPSGPS 44
Score = 54.0 bits (131), Expect = 3e-10
Identities = 15/34 (44%), Positives = 17/34 (50%)
Query: 203 VHRRSHTGEKPYKCELCSYACAQSSKLTRHMKTH 236
S TG+KPYKC C Q+S L RH H
Sbjct: 2 SSGSSGTGKKPYKCNECGKVFTQNSHLARHRGIH 35
Score = 49.0 bits (118), Expect = 2e-08
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 109 AHRRNHTGEKPFKCTVCDHACSQSAKLKKHMKIH 142
+ + TG+KP+KC C +Q++ L +H IH
Sbjct: 2 SSGSSGTGKKPYKCNECGKVFTQNSHLARHRGIH 35
Score = 47.1 bits (113), Expect = 8e-08
Identities = 15/35 (42%), Positives = 19/35 (54%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKPFKCT 123
+K +C CGK F + L HR HTGEKP +
Sbjct: 10 KKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPS 44
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 54.8 bits (133), Expect = 2e-10
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKPYKCE 217
C CGK F + SNL H++ HTGEKP
Sbjct: 15 CAECGKAFTDRSNLFTHQKIHTGEKPSGPS 44
Score = 51.7 bits (125), Expect = 2e-09
Identities = 15/33 (45%), Positives = 16/33 (48%)
Query: 204 HRRSHTGEKPYKCELCSYACAQSSKLTRHMKTH 236
S TGEKPY+C C A S L H K H
Sbjct: 3 SGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIH 35
Score = 49.0 bits (118), Expect = 2e-08
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 109 AHRRNHTGEKPFKCTVCDHACSQSAKLKKHMKIH 142
+ + TGEKP++C C A + + L H KIH
Sbjct: 2 SSGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIH 35
Score = 45.6 bits (109), Expect = 3e-07
Identities = 15/34 (44%), Positives = 18/34 (52%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKPFKC 122
EK C CGK F + L H++ HTGEKP
Sbjct: 10 EKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGP 43
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 54.9 bits (133), Expect = 2e-10
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKPYKCE 217
C CGK F + S+ T H+R HTG++P
Sbjct: 15 CMECGKAFGDNSSCTQHQRLHTGQRPSGPS 44
Score = 52.6 bits (127), Expect = 1e-09
Identities = 15/33 (45%), Positives = 18/33 (54%)
Query: 204 HRRSHTGEKPYKCELCSYACAQSSKLTRHMKTH 236
S TGEKPYKC C A +S T+H + H
Sbjct: 3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLH 35
Score = 48.7 bits (117), Expect = 2e-08
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 109 AHRRNHTGEKPFKCTVCDHACSQSAKLKKHMKIH 142
+ + TGEKP+KC C A ++ +H ++H
Sbjct: 2 SSGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLH 35
Score = 46.8 bits (112), Expect = 1e-07
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKPFKCT 123
EK +C CGK F ++ H+R HTG++P +
Sbjct: 10 EKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPS 44
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 54.9 bits (133), Expect = 2e-10
Identities = 15/30 (50%), Positives = 17/30 (56%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKPYKCE 217
CE CGK F S H+RSH+GEKP
Sbjct: 15 CEECGKGFYTNSQCYSHQRSHSGEKPSGPS 44
Score = 51.0 bits (123), Expect = 3e-09
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 204 HRRSHTGEKPYKCELCSYACAQSSKLTRHMKTH 236
S +GEKP+KCE C +S+ H ++H
Sbjct: 3 SGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSH 35
Score = 47.5 bits (114), Expect = 6e-08
Identities = 15/35 (42%), Positives = 22/35 (62%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKPFKCT 123
EK +CE CGK F + +H+R+H+GEKP +
Sbjct: 10 EKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPS 44
Score = 47.5 bits (114), Expect = 6e-08
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 109 AHRRNHTGEKPFKCTVCDHACSQSAKLKKHMKIH 142
+ + +GEKPFKC C +++ H + H
Sbjct: 2 SSGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSH 35
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 42
Score = 54.4 bits (132), Expect = 2e-10
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 109 AHRRNHTGEKPFKCTVCDHACSQSAKLKKHMKIH 142
+ GEKP+ C +C LK H++IH
Sbjct: 1 GSSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIH 34
Score = 54.4 bits (132), Expect = 2e-10
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 204 HRRSHTGEKPYKCELCSYACAQSSKLTRHMKTH 236
S GEKPY CE+C L H++ H
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIH 34
Score = 51.0 bits (123), Expect = 4e-09
Identities = 12/28 (42%), Positives = 14/28 (50%)
Query: 187 TCEFCGKVFKNCSNLTVHRRSHTGEKPY 214
CE CG F++ L H R HTG P
Sbjct: 13 PCEICGTRFRHLQTLKSHLRIHTGSGPS 40
Score = 46.7 bits (112), Expect = 1e-07
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKPF 120
EK CE CG +F++ TL++H R HTG P
Sbjct: 9 EKPYPCEICGTRFRHLQTLKSHLRIHTGSGPS 40
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 54.4 bits (132), Expect = 2e-10
Identities = 16/30 (53%), Positives = 17/30 (56%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKPYKCE 217
C CGKVF S+L HR HTGEKP
Sbjct: 15 CNECGKVFTQNSHLVRHRGIHTGEKPSGPS 44
Score = 52.9 bits (128), Expect = 6e-10
Identities = 16/33 (48%), Positives = 17/33 (51%)
Query: 204 HRRSHTGEKPYKCELCSYACAQSSKLTRHMKTH 236
S TGEKPYKC C Q+S L RH H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIH 35
Score = 49.0 bits (118), Expect = 2e-08
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 109 AHRRNHTGEKPFKCTVCDHACSQSAKLKKHMKIH 142
+ + TGEKP+KC C +Q++ L +H IH
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIH 35
Score = 47.5 bits (114), Expect = 6e-08
Identities = 16/35 (45%), Positives = 19/35 (54%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKPFKCT 123
EK +C CGK F + L HR HTGEKP +
Sbjct: 10 EKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGPS 44
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 54.4 bits (132), Expect = 2e-10
Identities = 15/30 (50%), Positives = 16/30 (53%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKPYKCE 217
C CGK F + L HRR HTGEKP
Sbjct: 15 CIDCGKAFSDHIGLNQHRRIHTGEKPSGPS 44
Score = 51.7 bits (125), Expect = 2e-09
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 204 HRRSHTGEKPYKCELCSYACAQSSKLTRHMKTH 236
S TGEKP+ C C A + L +H + H
Sbjct: 3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIH 35
Score = 48.7 bits (117), Expect = 2e-08
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 109 AHRRNHTGEKPFKCTVCDHACSQSAKLKKHMKIH 142
+ + TGEKPF C C A S L +H +IH
Sbjct: 2 SSGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIH 35
Score = 47.9 bits (115), Expect = 4e-08
Identities = 17/35 (48%), Positives = 19/35 (54%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKPFKCT 123
EK +C CGK F L HRR HTGEKP +
Sbjct: 10 EKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPS 44
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 54.4 bits (132), Expect = 2e-10
Identities = 16/30 (53%), Positives = 18/30 (60%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKPYKCE 217
C C K F SNL VH+R+HTGEKP
Sbjct: 15 CSECQKAFNTKSNLIVHQRTHTGEKPSGPS 44
Score = 50.9 bits (123), Expect = 3e-09
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 204 HRRSHTGEKPYKCELCSYACAQSSKLTRHMKTH 236
S TGEKP++C C A S L H +TH
Sbjct: 3 SGSSGTGEKPFECSECQKAFNTKSNLIVHQRTH 35
Score = 48.6 bits (117), Expect = 3e-08
Identities = 16/35 (45%), Positives = 20/35 (57%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKPFKCT 123
EK EC C K F ++ L H+R HTGEKP +
Sbjct: 10 EKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGPS 44
Score = 46.7 bits (112), Expect = 1e-07
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 109 AHRRNHTGEKPFKCTVCDHACSQSAKLKKHMKIH 142
+ + TGEKPF+C+ C A + + L H + H
Sbjct: 2 SSGSSGTGEKPFECSECQKAFNTKSNLIVHQRTH 35
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 54.4 bits (132), Expect = 2e-10
Identities = 17/29 (58%), Positives = 18/29 (62%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKPYKC 216
C CGKVF S+LT H R HTGEKP
Sbjct: 15 CNECGKVFTQNSHLTNHWRIHTGEKPSGP 43
Score = 52.5 bits (127), Expect = 9e-10
Identities = 15/33 (45%), Positives = 18/33 (54%)
Query: 204 HRRSHTGEKPYKCELCSYACAQSSKLTRHMKTH 236
S +GEKPYKC C Q+S LT H + H
Sbjct: 3 SGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIH 35
Score = 48.6 bits (117), Expect = 2e-08
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 109 AHRRNHTGEKPFKCTVCDHACSQSAKLKKHMKIH 142
+ + +GEKP+KC C +Q++ L H +IH
Sbjct: 2 SSGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIH 35
Score = 47.5 bits (114), Expect = 7e-08
Identities = 16/35 (45%), Positives = 19/35 (54%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKPFKCT 123
EK +C CGK F + L H R HTGEKP +
Sbjct: 10 EKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGPS 44
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 54.5 bits (132), Expect = 2e-10
Identities = 15/30 (50%), Positives = 16/30 (53%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKPYKCE 217
C CGK F S L H+R HTGEKP
Sbjct: 15 CNECGKAFSQTSKLARHQRVHTGEKPSGPS 44
Score = 52.5 bits (127), Expect = 1e-09
Identities = 16/33 (48%), Positives = 20/33 (60%)
Query: 204 HRRSHTGEKPYKCELCSYACAQSSKLTRHMKTH 236
S TG KPY+C C A +Q+SKL RH + H
Sbjct: 3 SGSSGTGGKPYQCNECGKAFSQTSKLARHQRVH 35
Score = 47.9 bits (115), Expect = 4e-08
Identities = 13/34 (38%), Positives = 22/34 (64%)
Query: 109 AHRRNHTGEKPFKCTVCDHACSQSAKLKKHMKIH 142
+ + TG KP++C C A SQ++KL +H ++H
Sbjct: 2 SSGSSGTGGKPYQCNECGKAFSQTSKLARHQRVH 35
Score = 47.5 bits (114), Expect = 5e-08
Identities = 15/35 (42%), Positives = 19/35 (54%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKPFKCT 123
K +C CGK F + L H+R HTGEKP +
Sbjct: 10 GKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGPS 44
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 54.4 bits (132), Expect = 2e-10
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKPYKC 216
C CGK F S L +H++SHTGE+
Sbjct: 15 CSDCGKAFTRKSGLHIHQQSHTGERHSGP 43
Score = 50.6 bits (122), Expect = 4e-09
Identities = 15/33 (45%), Positives = 18/33 (54%)
Query: 204 HRRSHTGEKPYKCELCSYACAQSSKLTRHMKTH 236
S TGEKPYKC C A + S L H ++H
Sbjct: 3 SGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSH 35
Score = 47.1 bits (113), Expect = 8e-08
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 110 HRRNHTGEKPFKCTVCDHACSQSAKLKKHMKIH 142
+ TGEKP+KC+ C A ++ + L H + H
Sbjct: 3 SGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSH 35
Score = 46.7 bits (112), Expect = 1e-07
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKPFKCT 123
EK +C CGK F ++ L H+++HTGE+ +
Sbjct: 10 EKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGPS 44
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 54.4 bits (132), Expect = 2e-10
Identities = 15/30 (50%), Positives = 16/30 (53%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKPYKCE 217
C CGK F S L H+R HTGEKP
Sbjct: 15 CNECGKAFSQTSKLARHQRIHTGEKPSGPS 44
Score = 52.9 bits (128), Expect = 7e-10
Identities = 18/33 (54%), Positives = 21/33 (63%)
Query: 204 HRRSHTGEKPYKCELCSYACAQSSKLTRHMKTH 236
S TGEKPYKC C A +Q+SKL RH + H
Sbjct: 3 SGSSGTGEKPYKCNECGKAFSQTSKLARHQRIH 35
Score = 49.1 bits (118), Expect = 2e-08
Identities = 16/33 (48%), Positives = 22/33 (66%)
Query: 110 HRRNHTGEKPFKCTVCDHACSQSAKLKKHMKIH 142
+ TGEKP+KC C A SQ++KL +H +IH
Sbjct: 3 SGSSGTGEKPYKCNECGKAFSQTSKLARHQRIH 35
Score = 47.5 bits (114), Expect = 6e-08
Identities = 16/35 (45%), Positives = 20/35 (57%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKPFKCT 123
EK +C CGK F + L H+R HTGEKP +
Sbjct: 10 EKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGPS 44
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 54.4 bits (132), Expect = 2e-10
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKPYKC 216
C CGK F + SNL H++ HTGEKP
Sbjct: 15 CTVCGKAFTDRSNLIKHQKIHTGEKPSGP 43
Score = 52.5 bits (127), Expect = 1e-09
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 204 HRRSHTGEKPYKCELCSYACAQSSKLTRHMKTH 236
S TGE+PY C +C A S L +H K H
Sbjct: 3 SGSSGTGERPYICTVCGKAFTDRSNLIKHQKIH 35
Score = 49.8 bits (120), Expect = 1e-08
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 109 AHRRNHTGEKPFKCTVCDHACSQSAKLKKHMKIH 142
+ + TGE+P+ CTVC A + + L KH KIH
Sbjct: 2 SSGSSGTGERPYICTVCGKAFTDRSNLIKHQKIH 35
Score = 46.7 bits (112), Expect = 1e-07
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKPFKC 122
E+ C CGK F + L H++ HTGEKP
Sbjct: 10 ERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGP 43
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Length = 46
Score = 54.1 bits (131), Expect = 2e-10
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKPYKCE 217
C+ CGK F+ S L H+R H+GEKP
Sbjct: 15 CKECGKSFRWASCLLKHQRVHSGEKPSGPS 44
Score = 51.4 bits (124), Expect = 2e-09
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 204 HRRSHTGEKPYKCELCSYACAQSSKLTRHMKTH 236
S TGEKPY C+ C + +S L +H + H
Sbjct: 3 SGSSGTGEKPYNCKECGKSFRWASCLLKHQRVH 35
Score = 49.1 bits (118), Expect = 2e-08
Identities = 15/35 (42%), Positives = 22/35 (62%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKPFKCT 123
EK C+ CGK F++ + L H+R H+GEKP +
Sbjct: 10 EKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPS 44
Score = 48.3 bits (116), Expect = 3e-08
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 109 AHRRNHTGEKPFKCTVCDHACSQSAKLKKHMKIH 142
+ + TGEKP+ C C + ++ L KH ++H
Sbjct: 2 SSGSSGTGEKPYNCKECGKSFRWASCLLKHQRVH 35
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2ena_A 2en4_A
Length = 46
Score = 54.1 bits (131), Expect = 2e-10
Identities = 15/29 (51%), Positives = 16/29 (55%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKPYKC 216
C CGK F S L VH + HTGEKP
Sbjct: 15 CVECGKGFSRRSALNVHHKLHTGEKPSGP 43
Score = 51.4 bits (124), Expect = 3e-09
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 204 HRRSHTGEKPYKCELCSYACAQSSKLTRHMKTH 236
S TGEKP+KC C ++ S L H K H
Sbjct: 3 SGSSGTGEKPFKCVECGKGFSRRSALNVHHKLH 35
Score = 49.1 bits (118), Expect = 2e-08
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 109 AHRRNHTGEKPFKCTVCDHACSQSAKLKKHMKIH 142
+ + TGEKPFKC C S+ + L H K+H
Sbjct: 2 SSGSSGTGEKPFKCVECGKGFSRRSALNVHHKLH 35
Score = 48.3 bits (116), Expect = 3e-08
Identities = 15/35 (42%), Positives = 19/35 (54%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKPFKCT 123
EK +C CGK F + L H + HTGEKP +
Sbjct: 10 EKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGPS 44
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 54.1 bits (131), Expect = 3e-10
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKPYKC 216
C CGK F+ S+L +H+ +H+GEKP
Sbjct: 15 CNECGKAFRARSSLAIHQATHSGEKPSGP 43
Score = 51.8 bits (125), Expect = 2e-09
Identities = 16/33 (48%), Positives = 16/33 (48%)
Query: 204 HRRSHTGEKPYKCELCSYACAQSSKLTRHMKTH 236
S TGEKPYKC C A S L H TH
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRARSSLAIHQATH 35
Score = 49.5 bits (119), Expect = 1e-08
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKPFKCT 123
EK +C CGK F+ ++L H+ H+GEKP +
Sbjct: 10 EKPYKCNECGKAFRARSSLAIHQATHSGEKPSGPS 44
Score = 46.4 bits (111), Expect = 2e-07
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 110 HRRNHTGEKPFKCTVCDHACSQSAKLKKHMKIH 142
+ TGEKP+KC C A + L H H
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRARSSLAIHQATH 35
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 54.0 bits (131), Expect = 3e-10
Identities = 16/29 (55%), Positives = 18/29 (62%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKPYKC 216
C CGK F +NLT H+R HTGEKP
Sbjct: 15 CGECGKAFAQKANLTQHQRIHTGEKPSGP 43
Score = 51.7 bits (125), Expect = 2e-09
Identities = 16/33 (48%), Positives = 20/33 (60%)
Query: 204 HRRSHTGEKPYKCELCSYACAQSSKLTRHMKTH 236
S TGEKPY+C C A AQ + LT+H + H
Sbjct: 3 SGSSGTGEKPYRCGECGKAFAQKANLTQHQRIH 35
Score = 48.7 bits (117), Expect = 2e-08
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 109 AHRRNHTGEKPFKCTVCDHACSQSAKLKKHMKIH 142
+ + TGEKP++C C A +Q A L +H +IH
Sbjct: 2 SSGSSGTGEKPYRCGECGKAFAQKANLTQHQRIH 35
Score = 46.0 bits (110), Expect = 2e-07
Identities = 16/35 (45%), Positives = 19/35 (54%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKPFKCT 123
EK C CGK F + L H+R HTGEKP +
Sbjct: 10 EKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGPS 44
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 54.1 bits (131), Expect = 3e-10
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKPYKC 216
C++CGK F + L H+R HTGEKP
Sbjct: 15 CDYCGKAFGLSAELVRHQRIHTGEKPSGP 43
Score = 52.9 bits (128), Expect = 8e-10
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 204 HRRSHTGEKPYKCELCSYACAQSSKLTRHMKTH 236
S +GEKPY C+ C A S++L RH + H
Sbjct: 3 SGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIH 35
Score = 48.7 bits (117), Expect = 2e-08
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 110 HRRNHTGEKPFKCTVCDHACSQSAKLKKHMKIH 142
+ +GEKP+ C C A SA+L +H +IH
Sbjct: 3 SGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIH 35
Score = 47.1 bits (113), Expect = 8e-08
Identities = 16/35 (45%), Positives = 20/35 (57%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKPFKCT 123
EK C++CGK F L H+R HTGEKP +
Sbjct: 10 EKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGPS 44
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 54.0 bits (131), Expect = 3e-10
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKPYKCE 217
C+ CGK F+ +L H R HTGEKP
Sbjct: 15 CKECGKAFRQNIHLASHLRIHTGEKPSGPS 44
Score = 51.7 bits (125), Expect = 2e-09
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 204 HRRSHTGEKPYKCELCSYACAQSSKLTRHMKTH 236
S +GEKP+KC+ C A Q+ L H++ H
Sbjct: 3 SGSSGSGEKPFKCKECGKAFRQNIHLASHLRIH 35
Score = 49.0 bits (118), Expect = 2e-08
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 109 AHRRNHTGEKPFKCTVCDHACSQSAKLKKHMKIH 142
+ + +GEKPFKC C A Q+ L H++IH
Sbjct: 2 SSGSSGSGEKPFKCKECGKAFRQNIHLASHLRIH 35
Score = 47.5 bits (114), Expect = 7e-08
Identities = 16/35 (45%), Positives = 21/35 (60%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKPFKCT 123
EK +C+ CGK F+ L +H R HTGEKP +
Sbjct: 10 EKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGPS 44
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 54.0 bits (131), Expect = 3e-10
Identities = 16/30 (53%), Positives = 17/30 (56%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKPYKCE 217
C CGKVF S+L HR HTGEKP
Sbjct: 15 CNECGKVFTQNSHLARHRGIHTGEKPSGPS 44
Score = 52.5 bits (127), Expect = 9e-10
Identities = 16/33 (48%), Positives = 17/33 (51%)
Query: 204 HRRSHTGEKPYKCELCSYACAQSSKLTRHMKTH 236
S TGEKPYKC C Q+S L RH H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRGIH 35
Score = 49.0 bits (118), Expect = 2e-08
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 109 AHRRNHTGEKPFKCTVCDHACSQSAKLKKHMKIH 142
+ + TGEKP+KC C +Q++ L +H IH
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRGIH 35
Score = 46.7 bits (112), Expect = 1e-07
Identities = 16/35 (45%), Positives = 19/35 (54%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKPFKCT 123
EK +C CGK F + L HR HTGEKP +
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPS 44
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 54.1 bits (131), Expect = 3e-10
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKPYKCE 217
C CGK F S+LT H+ HTG+KP
Sbjct: 15 CNQCGKAFSVRSSLTTHQAIHTGKKPSGPS 44
Score = 51.0 bits (123), Expect = 4e-09
Identities = 15/33 (45%), Positives = 17/33 (51%)
Query: 204 HRRSHTGEKPYKCELCSYACAQSSKLTRHMKTH 236
S TGEKPY+C C A + S LT H H
Sbjct: 3 SGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIH 35
Score = 47.9 bits (115), Expect = 4e-08
Identities = 15/35 (42%), Positives = 20/35 (57%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKPFKCT 123
EK EC CGK F ++L H+ HTG+KP +
Sbjct: 10 EKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPS 44
Score = 46.0 bits (110), Expect = 2e-07
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 110 HRRNHTGEKPFKCTVCDHACSQSAKLKKHMKIH 142
+ TGEKP++C C A S + L H IH
Sbjct: 3 SGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIH 35
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 54.1 bits (131), Expect = 3e-10
Identities = 16/30 (53%), Positives = 17/30 (56%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKPYKCE 217
C CGKVF S+L HRR HTG KP
Sbjct: 15 CNECGKVFTQNSHLARHRRVHTGGKPSGPS 44
Score = 52.1 bits (126), Expect = 1e-09
Identities = 16/33 (48%), Positives = 18/33 (54%)
Query: 204 HRRSHTGEKPYKCELCSYACAQSSKLTRHMKTH 236
S TGEKPYKC C Q+S L RH + H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRRVH 35
Score = 48.7 bits (117), Expect = 2e-08
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 109 AHRRNHTGEKPFKCTVCDHACSQSAKLKKHMKIH 142
+ + TGEKP+KC C +Q++ L +H ++H
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRRVH 35
Score = 47.5 bits (114), Expect = 6e-08
Identities = 16/35 (45%), Positives = 19/35 (54%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKPFKCT 123
EK +C CGK F + L HRR HTG KP +
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGPS 44
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 54.0 bits (131), Expect = 3e-10
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKPYKC 216
C CGK F++ S L +H R+HTGE
Sbjct: 15 CNECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 51.7 bits (125), Expect = 2e-09
Identities = 14/33 (42%), Positives = 15/33 (45%)
Query: 204 HRRSHTGEKPYKCELCSYACAQSSKLTRHMKTH 236
S TG KPY C C A S L H +TH
Sbjct: 3 SGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTH 35
Score = 48.3 bits (116), Expect = 3e-08
Identities = 13/34 (38%), Positives = 16/34 (47%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKPFKC 122
K C CGK F+ ++ L H R HTGE
Sbjct: 10 MKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 45.6 bits (109), Expect = 3e-07
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 109 AHRRNHTGEKPFKCTVCDHACSQSAKLKKHMKIH 142
+ + TG KP+ C C A + L H + H
Sbjct: 2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTH 35
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 54.1 bits (131), Expect = 3e-10
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKPYKC 216
C CGK F S L +H++ HTGE+
Sbjct: 15 CSDCGKSFTWKSRLRIHQKCHTGERHSGP 43
Score = 50.6 bits (122), Expect = 4e-09
Identities = 15/33 (45%), Positives = 17/33 (51%)
Query: 204 HRRSHTGEKPYKCELCSYACAQSSKLTRHMKTH 236
S TGEKPYKC C + S+L H K H
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCH 35
Score = 48.7 bits (117), Expect = 2e-08
Identities = 13/35 (37%), Positives = 22/35 (62%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKPFKCT 123
EK +C CGK F +++ L+ H++ HTGE+ +
Sbjct: 10 EKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGPS 44
Score = 48.3 bits (116), Expect = 3e-08
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 109 AHRRNHTGEKPFKCTVCDHACSQSAKLKKHMKIH 142
+ + TGEKP+KC+ C + + ++L+ H K H
Sbjct: 2 SSGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCH 35
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 54.1 bits (131), Expect = 3e-10
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKPYKC 216
C CGK +K +L H+R HTGEK
Sbjct: 15 CVECGKGYKRRLDLDFHQRVHTGEKLSGP 43
Score = 51.0 bits (123), Expect = 4e-09
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 204 HRRSHTGEKPYKCELCSYACAQSSKLTRHMKTH 236
S +GEKPYKC C + L H + H
Sbjct: 3 SGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVH 35
Score = 48.3 bits (116), Expect = 3e-08
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 109 AHRRNHTGEKPFKCTVCDHACSQSAKLKKHMKIH 142
+ + +GEKP+KC C + L H ++H
Sbjct: 2 SSGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVH 35
Score = 47.1 bits (113), Expect = 7e-08
Identities = 15/35 (42%), Positives = 19/35 (54%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKPFKCT 123
EK +C CGK +K L H+R HTGEK +
Sbjct: 10 EKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGPS 44
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2eoi_A
Length = 46
Score = 54.0 bits (131), Expect = 3e-10
Identities = 15/30 (50%), Positives = 16/30 (53%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKPYKCE 217
C CGK F S L H+R HTGEKP
Sbjct: 15 CAECGKSFSISSQLATHQRIHTGEKPSGPS 44
Score = 51.0 bits (123), Expect = 3e-09
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 204 HRRSHTGEKPYKCELCSYACAQSSKLTRHMKTH 236
S TGEKP++C C + + SS+L H + H
Sbjct: 3 SGSSGTGEKPFECAECGKSFSISSQLATHQRIH 35
Score = 47.9 bits (115), Expect = 4e-08
Identities = 17/35 (48%), Positives = 20/35 (57%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKPFKCT 123
EK EC CGK F + L H+R HTGEKP +
Sbjct: 10 EKPFECAECGKSFSISSQLATHQRIHTGEKPSGPS 44
Score = 47.5 bits (114), Expect = 5e-08
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 110 HRRNHTGEKPFKCTVCDHACSQSAKLKKHMKIH 142
+ TGEKPF+C C + S S++L H +IH
Sbjct: 3 SGSSGTGEKPFECAECGKSFSISSQLATHQRIH 35
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 54.1 bits (131), Expect = 3e-10
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKPYKCE 217
C CGK F + +L+VH+R H+G+KP
Sbjct: 15 CSVCGKAFSHRQSLSVHQRIHSGKKPSGPS 44
Score = 51.7 bits (125), Expect = 2e-09
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 203 VHRRSHTGEKPYKCELCSYACAQSSKLTRHMKTH 236
S TGEKPY+C +C A + L+ H + H
Sbjct: 2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIH 35
Score = 48.3 bits (116), Expect = 3e-08
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKPFKCT 123
EK EC CGK F + +L H+R H+G+KP +
Sbjct: 10 EKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPS 44
Score = 47.5 bits (114), Expect = 5e-08
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 110 HRRNHTGEKPFKCTVCDHACSQSAKLKKHMKIH 142
+ TGEKP++C+VC A S L H +IH
Sbjct: 3 SGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIH 35
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Length = 46
Score = 53.7 bits (130), Expect = 3e-10
Identities = 15/29 (51%), Positives = 16/29 (55%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKPYKC 216
C C K F S L VH+RSHTG KP
Sbjct: 15 CSQCAKTFSLKSQLIVHQRSHTGVKPSGP 43
Score = 50.2 bits (121), Expect = 7e-09
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 204 HRRSHTGEKPYKCELCSYACAQSSKLTRHMKTH 236
S TG KPY C C+ + S+L H ++H
Sbjct: 3 SGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSH 35
Score = 47.9 bits (115), Expect = 4e-08
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKPFKCT 123
K C C K F ++ L H+R+HTG KP +
Sbjct: 10 VKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGPS 44
Score = 46.0 bits (110), Expect = 2e-07
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 109 AHRRNHTGEKPFKCTVCDHACSQSAKLKKHMKIH 142
+ + TG KP+ C+ C S ++L H + H
Sbjct: 2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSH 35
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 53.7 bits (130), Expect = 3e-10
Identities = 13/29 (44%), Positives = 14/29 (48%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKPYKC 216
C CGK F LT H +HT EKP
Sbjct: 15 CSECGKSFSGSYRLTQHWITHTREKPSGP 43
Score = 51.0 bits (123), Expect = 3e-09
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 204 HRRSHTGEKPYKCELCSYACAQSSKLTRHMKTH 236
S GEKPY+C C + + S +LT+H TH
Sbjct: 3 SGSSGEGEKPYQCSECGKSFSGSYRLTQHWITH 35
Score = 46.0 bits (110), Expect = 2e-07
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 109 AHRRNHTGEKPFKCTVCDHACSQSAKLKKHMKIH 142
+ + GEKP++C+ C + S S +L +H H
Sbjct: 2 SSGSSGEGEKPYQCSECGKSFSGSYRLTQHWITH 35
Score = 46.0 bits (110), Expect = 2e-07
Identities = 14/35 (40%), Positives = 16/35 (45%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKPFKCT 123
EK +C CGK F L H HT EKP +
Sbjct: 10 EKPYQCSECGKSFSGSYRLTQHWITHTREKPSGPS 44
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens}
Length = 46
Score = 53.7 bits (130), Expect = 3e-10
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKPYKC 216
C C F S+L +H+ H GEKP
Sbjct: 15 CRECDMCFSQASSLRLHQNVHVGEKPSGP 43
Score = 49.8 bits (120), Expect = 8e-09
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 109 AHRRNHTGEKPFKCTVCDHACSQSAKLKKHMKIH 142
+ + GEK +KC CD SQ++ L+ H +H
Sbjct: 2 SSGSSGMGEKTWKCRECDMCFSQASSLRLHQNVH 35
Score = 49.8 bits (120), Expect = 9e-09
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 204 HRRSHTGEKPYKCELCSYACAQSSKLTRHMKTH 236
S GEK +KC C +Q+S L H H
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVH 35
Score = 46.4 bits (111), Expect = 1e-07
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKPFKCT 123
EK +C C F ++L+ H+ H GEKP +
Sbjct: 10 EKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGPS 44
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 53.7 bits (130), Expect = 4e-10
Identities = 15/30 (50%), Positives = 17/30 (56%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKPYKCE 217
C CGKVF S+L H+R HTG KP
Sbjct: 15 CNECGKVFTQNSHLANHQRIHTGVKPSGPS 44
Score = 52.5 bits (127), Expect = 1e-09
Identities = 15/33 (45%), Positives = 17/33 (51%)
Query: 204 HRRSHTGEKPYKCELCSYACAQSSKLTRHMKTH 236
S TGEKPYKC C Q+S L H + H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLANHQRIH 35
Score = 49.8 bits (120), Expect = 8e-09
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 109 AHRRNHTGEKPFKCTVCDHACSQSAKLKKHMKIH 142
+ + TGEKP+KC C +Q++ L H +IH
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLANHQRIH 35
Score = 46.7 bits (112), Expect = 1e-07
Identities = 15/35 (42%), Positives = 19/35 (54%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKPFKCT 123
EK +C CGK F + L H+R HTG KP +
Sbjct: 10 EKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGPS 44
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 53.7 bits (130), Expect = 4e-10
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKPYKC 216
C C K F + S L VH+++H EKP
Sbjct: 13 CSCCEKAFSSKSYLLVHQQTHAEEKPSGP 41
Score = 46.8 bits (112), Expect = 1e-07
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKPFKCT 123
EK C C K F ++ L H++ H EKP +
Sbjct: 8 EKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPS 42
Score = 44.1 bits (105), Expect = 9e-07
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 206 RSHTGEKPYKCELCSYACAQSSKLTRHMKTH 236
+GEKP+ C C A + S L H +TH
Sbjct: 3 SGSSGEKPFGCSCCEKAFSSKSYLLVHQQTH 33
Score = 42.9 bits (102), Expect = 3e-06
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 114 HTGEKPFKCTVCDHACSQSAKLKKHMKIH 142
+GEKPF C+ C+ A S + L H + H
Sbjct: 5 SSGEKPFGCSCCEKAFSSKSYLLVHQQTH 33
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 53.7 bits (130), Expect = 4e-10
Identities = 15/29 (51%), Positives = 17/29 (58%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKPYKC 216
C CGK F S L VH++ HTGEKP
Sbjct: 15 CSICGKSFTKKSQLHVHQQIHTGEKPSGP 43
Score = 50.6 bits (122), Expect = 5e-09
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 203 VHRRSHTGEKPYKCELCSYACAQSSKLTRHMKTH 236
S TGEKPY+C +C + + S+L H + H
Sbjct: 2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIH 35
Score = 47.5 bits (114), Expect = 7e-08
Identities = 16/35 (45%), Positives = 21/35 (60%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKPFKCT 123
EK EC CGK F ++ L H++ HTGEKP +
Sbjct: 10 EKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGPS 44
Score = 46.8 bits (112), Expect = 9e-08
Identities = 11/33 (33%), Positives = 22/33 (66%)
Query: 110 HRRNHTGEKPFKCTVCDHACSQSAKLKKHMKIH 142
+ TGEKP++C++C + ++ ++L H +IH
Sbjct: 3 SGSSGTGEKPYECSICGKSFTKKSQLHVHQQIH 35
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 53.7 bits (130), Expect = 4e-10
Identities = 11/30 (36%), Positives = 13/30 (43%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKPYKCE 217
C CGK F ++L H R HT E
Sbjct: 15 CNVCGKAFVLSAHLNQHLRVHTQETLSGPS 44
Score = 52.9 bits (128), Expect = 6e-10
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 204 HRRSHTGEKPYKCELCSYACAQSSKLTRHMKTH 236
S TGEKPY C +C A S+ L +H++ H
Sbjct: 3 SGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVH 35
Score = 51.4 bits (124), Expect = 3e-09
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 110 HRRNHTGEKPFKCTVCDHACSQSAKLKKHMKIH 142
+ TGEKP+ C VC A SA L +H+++H
Sbjct: 3 SGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVH 35
Score = 47.9 bits (115), Expect = 4e-08
Identities = 13/35 (37%), Positives = 14/35 (40%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKPFKCT 123
EK C CGK F L H R HT E +
Sbjct: 10 EKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPS 44
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 53.7 bits (130), Expect = 4e-10
Identities = 16/30 (53%), Positives = 17/30 (56%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKPYKCE 217
C CGK F S+L HRR HTGEKP
Sbjct: 15 CNECGKSFIQKSHLNRHRRIHTGEKPSGPS 44
Score = 52.5 bits (127), Expect = 9e-10
Identities = 15/33 (45%), Positives = 17/33 (51%)
Query: 204 HRRSHTGEKPYKCELCSYACAQSSKLTRHMKTH 236
S TGEKPY C C + Q S L RH + H
Sbjct: 3 SGSSGTGEKPYICNECGKSFIQKSHLNRHRRIH 35
Score = 48.3 bits (116), Expect = 3e-08
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 109 AHRRNHTGEKPFKCTVCDHACSQSAKLKKHMKIH 142
+ + TGEKP+ C C + Q + L +H +IH
Sbjct: 2 SSGSSGTGEKPYICNECGKSFIQKSHLNRHRRIH 35
Score = 46.7 bits (112), Expect = 1e-07
Identities = 17/35 (48%), Positives = 20/35 (57%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKPFKCT 123
EK C CGK F ++ L HRR HTGEKP +
Sbjct: 10 EKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGPS 44
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 53.7 bits (130), Expect = 4e-10
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKPYKC 216
C CGKVF + +NL +H++ HTGE+P
Sbjct: 15 CSECGKVFTHKTNLIIHQKIHTGERPSGP 43
Score = 49.8 bits (120), Expect = 9e-09
Identities = 11/33 (33%), Positives = 13/33 (39%)
Query: 204 HRRSHTGEKPYKCELCSYACAQSSKLTRHMKTH 236
S TGE P+ C C + L H K H
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLIIHQKIH 35
Score = 47.9 bits (115), Expect = 4e-08
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 109 AHRRNHTGEKPFKCTVCDHACSQSAKLKKHMKIH 142
+ + TGE PF C+ C + L H KIH
Sbjct: 2 SSGSSGTGENPFICSECGKVFTHKTNLIIHQKIH 35
Score = 46.3 bits (111), Expect = 2e-07
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKPFKCT 123
E C CGK F ++ L H++ HTGE+P +
Sbjct: 10 ENPFICSECGKVFTHKTNLIIHQKIHTGERPSGPS 44
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 53.7 bits (130), Expect = 4e-10
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKPYKCE 217
C CGK F SNL H++ HT +KP
Sbjct: 15 CAECGKAFTIRSNLIKHQKIHTKQKPSGPS 44
Score = 52.1 bits (126), Expect = 1e-09
Identities = 15/33 (45%), Positives = 16/33 (48%)
Query: 204 HRRSHTGEKPYKCELCSYACAQSSKLTRHMKTH 236
S TGEKPY C C A S L +H K H
Sbjct: 3 SGSSGTGEKPYICAECGKAFTIRSNLIKHQKIH 35
Score = 49.0 bits (118), Expect = 2e-08
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 109 AHRRNHTGEKPFKCTVCDHACSQSAKLKKHMKIH 142
+ + TGEKP+ C C A + + L KH KIH
Sbjct: 2 SSGSSGTGEKPYICAECGKAFTIRSNLIKHQKIH 35
Score = 47.1 bits (113), Expect = 9e-08
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKPFKCT 123
EK C CGK F + L H++ HT +KP +
Sbjct: 10 EKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGPS 44
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 53.7 bits (130), Expect = 4e-10
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKPYKCE 217
C CGK F + S L +H R+H+GEKP
Sbjct: 15 CSECGKAFSSKSYLIIHMRTHSGEKPSGPS 44
Score = 52.6 bits (127), Expect = 1e-09
Identities = 15/33 (45%), Positives = 17/33 (51%)
Query: 204 HRRSHTGEKPYKCELCSYACAQSSKLTRHMKTH 236
S GEKPY C C A + S L HM+TH
Sbjct: 3 SGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTH 35
Score = 47.5 bits (114), Expect = 6e-08
Identities = 15/35 (42%), Positives = 19/35 (54%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKPFKCT 123
EK C CGK F ++ L H R H+GEKP +
Sbjct: 10 EKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGPS 44
Score = 47.2 bits (113), Expect = 8e-08
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 109 AHRRNHTGEKPFKCTVCDHACSQSAKLKKHMKIH 142
+ + GEKP+ C+ C A S + L HM+ H
Sbjct: 2 SSGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTH 35
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 53.3 bits (129), Expect = 4e-10
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 203 VHRRSHTGEKPYKCELCSYACAQSSKLTRHMKTH 236
S +GEKPY C C +Q S L+ H +TH
Sbjct: 2 SSGSSGSGEKPYGCNECGKTFSQKSILSAHQRTH 35
Score = 52.9 bits (128), Expect = 8e-10
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKPYKCE 217
C CGK F S L+ H+R+HTGEKP
Sbjct: 15 CNECGKTFSQKSILSAHQRTHTGEKPSGPS 44
Score = 48.3 bits (116), Expect = 3e-08
Identities = 17/35 (48%), Positives = 21/35 (60%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKPFKCT 123
EK C CGK F ++ L AH+R HTGEKP +
Sbjct: 10 EKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGPS 44
Score = 46.8 bits (112), Expect = 1e-07
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 109 AHRRNHTGEKPFKCTVCDHACSQSAKLKKHMKIH 142
+ + +GEKP+ C C SQ + L H + H
Sbjct: 2 SSGSSGSGEKPYGCNECGKTFSQKSILSAHQRTH 35
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 53.3 bits (129), Expect = 5e-10
Identities = 15/29 (51%), Positives = 16/29 (55%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKPYKC 216
C CGK F S L VH+R HTGE P
Sbjct: 15 CRECGKSFSFNSQLIVHQRIHTGENPSGP 43
Score = 50.6 bits (122), Expect = 5e-09
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 204 HRRSHTGEKPYKCELCSYACAQSSKLTRHMKTH 236
S TGEKP++C C + + +S+L H + H
Sbjct: 3 SGSSGTGEKPHECRECGKSFSFNSQLIVHQRIH 35
Score = 47.5 bits (114), Expect = 6e-08
Identities = 16/35 (45%), Positives = 20/35 (57%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKPFKCT 123
EK EC CGK F + + L H+R HTGE P +
Sbjct: 10 EKPHECRECGKSFSFNSQLIVHQRIHTGENPSGPS 44
Score = 46.8 bits (112), Expect = 1e-07
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 110 HRRNHTGEKPFKCTVCDHACSQSAKLKKHMKIH 142
+ TGEKP +C C + S +++L H +IH
Sbjct: 3 SGSSGTGEKPHECRECGKSFSFNSQLIVHQRIH 35
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 53.3 bits (129), Expect = 5e-10
Identities = 16/29 (55%), Positives = 17/29 (58%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKPYKC 216
CE CGK F S L H+R HTGEKP
Sbjct: 15 CEECGKRFTQNSQLHSHQRVHTGEKPSGP 43
Score = 51.0 bits (123), Expect = 3e-09
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 204 HRRSHTGEKPYKCELCSYACAQSSKLTRHMKTH 236
S +GEKP+KCE C Q+S+L H + H
Sbjct: 3 SGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVH 35
Score = 49.1 bits (118), Expect = 1e-08
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 110 HRRNHTGEKPFKCTVCDHACSQSAKLKKHMKIH 142
+ +GEKPFKC C +Q+++L H ++H
Sbjct: 3 SGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVH 35
Score = 47.9 bits (115), Expect = 5e-08
Identities = 17/35 (48%), Positives = 23/35 (65%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKPFKCT 123
EK +CE CGK+F + L +H+R HTGEKP +
Sbjct: 10 EKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGPS 44
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 53.3 bits (129), Expect = 5e-10
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKPYKC 216
C CGK + +LT H+R HTGEKP
Sbjct: 15 CGECGKSYNQRVHLTQHQRVHTGEKPSGP 43
Score = 51.0 bits (123), Expect = 3e-09
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 204 HRRSHTGEKPYKCELCSYACAQSSKLTRHMKTH 236
S TGEKP+KC C + Q LT+H + H
Sbjct: 3 SGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVH 35
Score = 47.9 bits (115), Expect = 4e-08
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 110 HRRNHTGEKPFKCTVCDHACSQSAKLKKHMKIH 142
+ TGEKPFKC C + +Q L +H ++H
Sbjct: 3 SGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVH 35
Score = 46.7 bits (112), Expect = 1e-07
Identities = 15/35 (42%), Positives = 19/35 (54%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKPFKCT 123
EK +C CGK + L H+R HTGEKP +
Sbjct: 10 EKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGPS 44
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 53.3 bits (129), Expect = 5e-10
Identities = 15/29 (51%), Positives = 16/29 (55%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKPYKC 216
C CGK F S L VH+R HTGE P
Sbjct: 15 CSDCGKSFIKKSQLHVHQRIHTGENPSGP 43
Score = 50.6 bits (122), Expect = 5e-09
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 203 VHRRSHTGEKPYKCELCSYACAQSSKLTRHMKTH 236
S TGEKPY+C C + + S+L H + H
Sbjct: 2 SSGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIH 35
Score = 46.4 bits (111), Expect = 1e-07
Identities = 11/34 (32%), Positives = 21/34 (61%)
Query: 109 AHRRNHTGEKPFKCTVCDHACSQSAKLKKHMKIH 142
+ + TGEKP++C+ C + + ++L H +IH
Sbjct: 2 SSGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIH 35
Score = 46.0 bits (110), Expect = 2e-07
Identities = 16/34 (47%), Positives = 19/34 (55%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKPFKC 122
EK EC CGK F ++ L H+R HTGE P
Sbjct: 10 EKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGP 43
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.9 bits (128), Expect = 6e-10
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKPYKCE 217
C+ C K F ++L H+++HTGEKP
Sbjct: 15 CKVCSKAFTQKAHLAQHQKTHTGEKPSGPS 44
Score = 51.8 bits (125), Expect = 2e-09
Identities = 17/33 (51%), Positives = 22/33 (66%)
Query: 204 HRRSHTGEKPYKCELCSYACAQSSKLTRHMKTH 236
S TGEKPY+C++CS A Q + L +H KTH
Sbjct: 3 SGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTH 35
Score = 48.3 bits (116), Expect = 3e-08
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 109 AHRRNHTGEKPFKCTVCDHACSQSAKLKKHMKIH 142
+ + TGEKP++C VC A +Q A L +H K H
Sbjct: 2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTH 35
Score = 47.1 bits (113), Expect = 8e-08
Identities = 15/35 (42%), Positives = 20/35 (57%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKPFKCT 123
EK EC+ C K F + L H++ HTGEKP +
Sbjct: 10 EKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPS 44
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 42
Score = 53.0 bits (128), Expect = 7e-10
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 204 HRRSHTGEKPYKCELCSYACAQSSKLTRHMKTH 236
S GEKPY+C+ C A +Q L H++ H
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVH 34
Score = 51.8 bits (125), Expect = 2e-09
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 109 AHRRNHTGEKPFKCTVCDHACSQSAKLKKHMKIH 142
+ GEKP++C C A SQ L H+++H
Sbjct: 1 GSSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVH 34
Score = 48.3 bits (116), Expect = 3e-08
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKPY 214
C+ CGK F +L VH R HTG P
Sbjct: 14 CDQCGKAFSQKGSLIVHIRVHTGSGPS 40
Score = 43.7 bits (104), Expect = 1e-06
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKPF 120
EK C+ CGK F + +L H R HTG P
Sbjct: 9 EKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPS 40
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.9 bits (128), Expect = 7e-10
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKPYKC 216
C CGK F S L++H+R H GEKP
Sbjct: 15 CSECGKAFIQKSTLSMHQRIHRGEKPSGP 43
Score = 51.4 bits (124), Expect = 3e-09
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 204 HRRSHTGEKPYKCELCSYACAQSSKLTRHMKTH 236
S TGE+ Y+C C A Q S L+ H + H
Sbjct: 3 SGSSGTGERHYECSECGKAFIQKSTLSMHQRIH 35
Score = 47.5 bits (114), Expect = 5e-08
Identities = 16/35 (45%), Positives = 22/35 (62%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKPFKCT 123
E++ EC CGK F ++TL H+R H GEKP +
Sbjct: 10 ERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGPS 44
Score = 47.1 bits (113), Expect = 8e-08
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 110 HRRNHTGEKPFKCTVCDHACSQSAKLKKHMKIH 142
+ TGE+ ++C+ C A Q + L H +IH
Sbjct: 3 SGSSGTGERHYECSECGKAFIQKSTLSMHQRIH 35
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 53.0 bits (128), Expect = 7e-10
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 204 HRRSHTGEKPYKCELCSYACAQSSKLTRHMKTH 236
S TGEKP++C+ C + S L +H+++H
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSH 35
Score = 49.1 bits (118), Expect = 2e-08
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 109 AHRRNHTGEKPFKCTVCDHACSQSAKLKKHMKIH 142
+ + TGEKPF+C C S S L KH++ H
Sbjct: 2 SSGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSH 35
Score = 48.4 bits (116), Expect = 3e-08
Identities = 10/29 (34%), Positives = 12/29 (41%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKPYKC 216
C+ CG F +L H RSH P
Sbjct: 15 CKECGMNFSWSCSLFKHLRSHERTDPSGP 43
Score = 46.4 bits (111), Expect = 1e-07
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKPFKC 122
EK +C+ CG F + +L H R+H P
Sbjct: 10 EKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGP 43
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 52.9 bits (128), Expect = 7e-10
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKPYKC 216
C CGK F S L +H+R+H +K
Sbjct: 15 CTECGKAFCWKSQLIMHQRTHVDDKHSGP 43
Score = 49.5 bits (119), Expect = 1e-08
Identities = 15/33 (45%), Positives = 17/33 (51%)
Query: 204 HRRSHTGEKPYKCELCSYACAQSSKLTRHMKTH 236
S TGEKP KC C A S+L H +TH
Sbjct: 3 SGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTH 35
Score = 46.8 bits (112), Expect = 1e-07
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKPFKCT 123
EK +C CGK F +++ L H+R H +K +
Sbjct: 10 EKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGPS 44
Score = 46.4 bits (111), Expect = 2e-07
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 109 AHRRNHTGEKPFKCTVCDHACSQSAKLKKHMKIH 142
+ + TGEKP KCT C A ++L H + H
Sbjct: 2 SSGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTH 35
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 45
Score = 52.5 bits (127), Expect = 8e-10
Identities = 14/29 (48%), Positives = 16/29 (55%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKPYKC 216
C CGK F+ NL H+R HTGEK
Sbjct: 15 CTHCGKSFRAKGNLVTHQRIHTGEKSGPS 43
Score = 49.5 bits (119), Expect = 1e-08
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 204 HRRSHTGEKPYKCELCSYACAQSSKLTRHMKTH 236
S TG+KP++C C + L H + H
Sbjct: 3 SGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIH 35
Score = 48.3 bits (116), Expect = 3e-08
Identities = 15/35 (42%), Positives = 20/35 (57%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKPFKCT 123
+K EC CGK F+ + L H+R HTGEK +
Sbjct: 10 QKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPSS 44
Score = 48.3 bits (116), Expect = 3e-08
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 109 AHRRNHTGEKPFKCTVCDHACSQSAKLKKHMKIH 142
+ + TG+KPF+CT C + L H +IH
Sbjct: 2 SSGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIH 35
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.5 bits (127), Expect = 9e-10
Identities = 16/29 (55%), Positives = 18/29 (62%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKPYKC 216
CE CGK F S+L H+R HTGEKP
Sbjct: 15 CEECGKRFTQNSHLHSHQRVHTGEKPSGP 43
Score = 50.6 bits (122), Expect = 5e-09
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 204 HRRSHTGEKPYKCELCSYACAQSSKLTRHMKTH 236
S +GEKP++CE C Q+S L H + H
Sbjct: 3 SGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVH 35
Score = 48.3 bits (116), Expect = 3e-08
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 110 HRRNHTGEKPFKCTVCDHACSQSAKLKKHMKIH 142
+ +GEKPF+C C +Q++ L H ++H
Sbjct: 3 SGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVH 35
Score = 47.5 bits (114), Expect = 7e-08
Identities = 17/35 (48%), Positives = 23/35 (65%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKPFKCT 123
EK +CE CGK+F + L +H+R HTGEKP +
Sbjct: 10 EKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGPS 44
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 52.5 bits (127), Expect = 9e-10
Identities = 16/29 (55%), Positives = 16/29 (55%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKPYKC 216
C CGK F SN HRR HTGEKP
Sbjct: 15 CSDCGKFFLQASNFIQHRRIHTGEKPSGP 43
Score = 52.2 bits (126), Expect = 1e-09
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 204 HRRSHTGEKPYKCELCSYACAQSSKLTRHMKTH 236
S GE+ ++C C Q+S +H + H
Sbjct: 3 SGSSGHGERGHRCSDCGKFFLQASNFIQHRRIH 35
Score = 50.6 bits (122), Expect = 4e-09
Identities = 8/33 (24%), Positives = 16/33 (48%)
Query: 110 HRRNHTGEKPFKCTVCDHACSQSAKLKKHMKIH 142
+ GE+ +C+ C Q++ +H +IH
Sbjct: 3 SGSSGHGERGHRCSDCGKFFLQASNFIQHRRIH 35
Score = 44.1 bits (105), Expect = 1e-06
Identities = 15/35 (42%), Positives = 18/35 (51%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKPFKCT 123
E+ C CGK F + HRR HTGEKP +
Sbjct: 10 ERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGPS 44
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 52.5 bits (127), Expect = 9e-10
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKPYKCE 217
C CGK F ++L H+R HTGEKP
Sbjct: 15 CNECGKSFIQSAHLIQHQRIHTGEKPSGPS 44
Score = 51.4 bits (124), Expect = 3e-09
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 204 HRRSHTGEKPYKCELCSYACAQSSKLTRHMKTH 236
S TGE+P+KC C + QS+ L +H + H
Sbjct: 3 SGSSGTGERPHKCNECGKSFIQSAHLIQHQRIH 35
Score = 47.9 bits (115), Expect = 4e-08
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 110 HRRNHTGEKPFKCTVCDHACSQSAKLKKHMKIH 142
+ TGE+P KC C + QSA L +H +IH
Sbjct: 3 SGSSGTGERPHKCNECGKSFIQSAHLIQHQRIH 35
Score = 46.7 bits (112), Expect = 1e-07
Identities = 15/35 (42%), Positives = 19/35 (54%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKPFKCT 123
E+ +C CGK F L H+R HTGEKP +
Sbjct: 10 ERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPS 44
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens}
Length = 46
Score = 52.5 bits (127), Expect = 9e-10
Identities = 13/29 (44%), Positives = 14/29 (48%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKPYKC 216
C C K F L VH+R HT EKP
Sbjct: 15 CSQCEKSFSGKLRLLVHQRMHTREKPSGP 43
Score = 47.9 bits (115), Expect = 5e-08
Identities = 9/34 (26%), Positives = 18/34 (52%)
Query: 109 AHRRNHTGEKPFKCTVCDHACSQSAKLKKHMKIH 142
+ + G P+KC+ C+ + S +L H ++H
Sbjct: 2 SSGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMH 35
Score = 47.1 bits (113), Expect = 9e-08
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 204 HRRSHTGEKPYKCELCSYACAQSSKLTRHMKTH 236
S G PYKC C + + +L H + H
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMH 35
Score = 45.6 bits (109), Expect = 3e-07
Identities = 12/35 (34%), Positives = 16/35 (45%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKPFKCT 123
+C C K F + L H+R HT EKP +
Sbjct: 10 VNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGPS 44
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2ysv_A
Length = 46
Score = 52.5 bits (127), Expect = 9e-10
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKPYKC 216
C+ CGK F ++L H+R HTGEKP
Sbjct: 15 CKECGKAFSQTTHLIQHQRVHTGEKPSGP 43
Score = 51.4 bits (124), Expect = 3e-09
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 204 HRRSHTGEKPYKCELCSYACAQSSKLTRHMKTH 236
S TGEKPY+C+ C A +Q++ L +H + H
Sbjct: 3 SGSSGTGEKPYECKECGKAFSQTTHLIQHQRVH 35
Score = 48.3 bits (116), Expect = 3e-08
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 110 HRRNHTGEKPFKCTVCDHACSQSAKLKKHMKIH 142
+ TGEKP++C C A SQ+ L +H ++H
Sbjct: 3 SGSSGTGEKPYECKECGKAFSQTTHLIQHQRVH 35
Score = 46.7 bits (112), Expect = 1e-07
Identities = 17/35 (48%), Positives = 20/35 (57%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKPFKCT 123
EK EC+ CGK F L H+R HTGEKP +
Sbjct: 10 EKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGPS 44
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 52.5 bits (127), Expect = 9e-10
Identities = 12/29 (41%), Positives = 14/29 (48%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKPYKC 216
C CGK F S+L H R H+ EK
Sbjct: 15 CNECGKGFGRRSHLAGHLRLHSREKSSGP 43
Score = 48.7 bits (117), Expect = 2e-08
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 204 HRRSHTGEKPYKCELCSYACAQSSKLTRHMKTH 236
S +GE+P+KC C + S L H++ H
Sbjct: 3 SGSSGSGERPFKCNECGKGFGRRSHLAGHLRLH 35
Score = 46.8 bits (112), Expect = 1e-07
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKPFKCT 123
E+ +C CGK F + L H R H+ EK +
Sbjct: 10 ERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGPS 44
Score = 46.0 bits (110), Expect = 2e-07
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 110 HRRNHTGEKPFKCTVCDHACSQSAKLKKHMKIH 142
+ +GE+PFKC C + + L H+++H
Sbjct: 3 SGSSGSGERPFKCNECGKGFGRRSHLAGHLRLH 35
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.5 bits (127), Expect = 9e-10
Identities = 13/29 (44%), Positives = 15/29 (51%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKPYKC 216
C CGK F L H+R+H GEKP
Sbjct: 15 CHECGKAFSRKYQLISHQRTHAGEKPSGP 43
Score = 51.4 bits (124), Expect = 2e-09
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 203 VHRRSHTGEKPYKCELCSYACAQSSKLTRHMKTH 236
S TGE PY+C C A ++ +L H +TH
Sbjct: 2 SSGSSGTGENPYECHECGKAFSRKYQLISHQRTH 35
Score = 48.3 bits (116), Expect = 3e-08
Identities = 15/35 (42%), Positives = 19/35 (54%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKPFKCT 123
E EC CGK F + L +H+R H GEKP +
Sbjct: 10 ENPYECHECGKAFSRKYQLISHQRTHAGEKPSGPS 44
Score = 46.7 bits (112), Expect = 1e-07
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 110 HRRNHTGEKPFKCTVCDHACSQSAKLKKHMKIH 142
+ TGE P++C C A S+ +L H + H
Sbjct: 3 SGSSGTGENPYECHECGKAFSRKYQLISHQRTH 35
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.5 bits (127), Expect = 1e-09
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKPYKCE 217
C CGK F S L++H++ HTGEKP
Sbjct: 15 CTECGKAFTRKSTLSMHQKIHTGEKPSGPS 44
Score = 50.6 bits (122), Expect = 5e-09
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 204 HRRSHTGEKPYKCELCSYACAQSSKLTRHMKTH 236
S TG K ++C C A + S L+ H K H
Sbjct: 3 SGSSGTGGKHFECTECGKAFTRKSTLSMHQKIH 35
Score = 47.9 bits (115), Expect = 4e-08
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 109 AHRRNHTGEKPFKCTVCDHACSQSAKLKKHMKIH 142
+ + TG K F+CT C A ++ + L H KIH
Sbjct: 2 SSGSSGTGGKHFECTECGKAFTRKSTLSMHQKIH 35
Score = 47.1 bits (113), Expect = 7e-08
Identities = 16/35 (45%), Positives = 22/35 (62%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKPFKCT 123
K+ EC CGK F ++TL H++ HTGEKP +
Sbjct: 10 GKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGPS 44
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.5 bits (127), Expect = 1e-09
Identities = 15/29 (51%), Positives = 17/29 (58%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKPYKC 216
C CGK F S L +H+R HTGEKP
Sbjct: 15 CSECGKAFARKSTLIMHQRIHTGEKPSGP 43
Score = 51.0 bits (123), Expect = 3e-09
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 204 HRRSHTGEKPYKCELCSYACAQSSKLTRHMKTH 236
S TGE+ Y+C C A A+ S L H + H
Sbjct: 3 SGSSGTGERHYECSECGKAFARKSTLIMHQRIH 35
Score = 47.5 bits (114), Expect = 6e-08
Identities = 17/35 (48%), Positives = 23/35 (65%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKPFKCT 123
E++ EC CGK F ++TL H+R HTGEKP +
Sbjct: 10 ERHYECSECGKAFARKSTLIMHQRIHTGEKPSGPS 44
Score = 46.7 bits (112), Expect = 1e-07
Identities = 10/33 (30%), Positives = 19/33 (57%)
Query: 110 HRRNHTGEKPFKCTVCDHACSQSAKLKKHMKIH 142
+ TGE+ ++C+ C A ++ + L H +IH
Sbjct: 3 SGSSGTGERHYECSECGKAFARKSTLIMHQRIH 35
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger,
transcription factor, DNA binding protein; NMR {Mus
musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Length = 37
Score = 52.0 bits (125), Expect = 1e-09
Identities = 15/33 (45%), Positives = 18/33 (54%)
Query: 110 HRRNHTGEKPFKCTVCDHACSQSAKLKKHMKIH 142
R TG KPF+C CD + S+S L H K H
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 51.2 bits (123), Expect = 2e-09
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 204 HRRSHTGEKPYKCELCSYACAQSSKLTRHMKTH 236
R TG KP++C C + ++S L H K H
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 25.8 bits (57), Expect = 2.8
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 187 TCEFCGKVFKNCSNLTVHRRSH 208
C C + F +L +HR+ H
Sbjct: 13 QCPDCDRSFSRSDHLALHRKRH 34
Score = 25.0 bits (55), Expect = 5.7
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNH 114
K +C C + F + L HR+ H
Sbjct: 9 IKPFQCPDCDRSFSRSDHLALHRKRH 34
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 52.1 bits (126), Expect = 1e-09
Identities = 13/29 (44%), Positives = 15/29 (51%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKPYKC 216
C+ CGK F L H R H+GEKP
Sbjct: 15 CKECGKSFSRAPCLLKHERLHSGEKPSGP 43
Score = 51.8 bits (125), Expect = 2e-09
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 204 HRRSHTGEKPYKCELCSYACAQSSKLTRHMKTH 236
S TGEK Y C+ C + +++ L +H + H
Sbjct: 3 SGSSGTGEKLYNCKECGKSFSRAPCLLKHERLH 35
Score = 48.7 bits (117), Expect = 2e-08
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 109 AHRRNHTGEKPFKCTVCDHACSQSAKLKKHMKIH 142
+ + TGEK + C C + S++ L KH ++H
Sbjct: 2 SSGSSGTGEKLYNCKECGKSFSRAPCLLKHERLH 35
Score = 47.1 bits (113), Expect = 7e-08
Identities = 15/35 (42%), Positives = 18/35 (51%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKPFKCT 123
EK C+ CGK F L H R H+GEKP +
Sbjct: 10 EKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGPS 44
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.2 bits (126), Expect = 1e-09
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKPYKCE 217
C+ C K F +L H+R HTGE+
Sbjct: 15 CKECRKTFIQIGHLNQHKRVHTGERSSGPS 44
Score = 49.5 bits (119), Expect = 1e-08
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 204 HRRSHTGEKPYKCELCSYACAQSSKLTRHMKTH 236
S +G+KPY+C+ C Q L +H + H
Sbjct: 3 SGSSGSGKKPYECKECRKTFIQIGHLNQHKRVH 35
Score = 47.1 bits (113), Expect = 7e-08
Identities = 9/34 (26%), Positives = 18/34 (52%)
Query: 109 AHRRNHTGEKPFKCTVCDHACSQSAKLKKHMKIH 142
+ + +G+KP++C C Q L +H ++H
Sbjct: 2 SSGSSGSGKKPYECKECRKTFIQIGHLNQHKRVH 35
Score = 46.4 bits (111), Expect = 1e-07
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKPFKC 122
+K EC+ C K F L H+R HTGE+
Sbjct: 10 KKPYECKECRKTFIQIGHLNQHKRVHTGERSSGP 43
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 44
Score = 51.8 bits (125), Expect = 2e-09
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 204 HRRSHTGEKPYKCELCSYACAQSSKLTRHMKTH 236
S +GEKPY+C C A S L H +TH
Sbjct: 3 SGSSGSGEKPYECNECGKAFIWKSLLIVHERTH 35
Score = 50.6 bits (122), Expect = 5e-09
Identities = 12/29 (41%), Positives = 13/29 (44%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKPYKC 216
C CGK F S L VH R+H G
Sbjct: 15 CNECGKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 47.5 bits (114), Expect = 6e-08
Identities = 13/34 (38%), Positives = 16/34 (47%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKPFKC 122
EK EC CGK F +++ L H R H G
Sbjct: 10 EKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 45.6 bits (109), Expect = 3e-07
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 109 AHRRNHTGEKPFKCTVCDHACSQSAKLKKHMKIH 142
+ + +GEKP++C C A + L H + H
Sbjct: 2 SSGSSGSGEKPYECNECGKAFIWKSLLIVHERTH 35
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Length = 42
Score = 51.7 bits (125), Expect = 2e-09
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKPYKC 216
C CGK F L H+R+H GE
Sbjct: 13 CSECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 47.1 bits (113), Expect = 6e-08
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 205 RRSHTGEKPYKCELCSYACAQSSKLTRHMKTH 236
+GE PY+C C A + +L H +TH
Sbjct: 2 SSGSSGENPYECSECGKAFNRKDQLISHQRTH 33
Score = 45.6 bits (109), Expect = 3e-07
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKPFKC 122
E EC CGK F ++ L +H+R H GE
Sbjct: 8 ENPYECSECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 42.9 bits (102), Expect = 3e-06
Identities = 9/32 (28%), Positives = 17/32 (53%)
Query: 111 RRNHTGEKPFKCTVCDHACSQSAKLKKHMKIH 142
+GE P++C+ C A ++ +L H + H
Sbjct: 2 SSGSSGENPYECSECGKAFNRKDQLISHQRTH 33
>2ent_A Krueppel-like factor 15; zinc binding, transcription factor,
adipogenesis, CLCNKA, chloride channel Ka, rhodopsin,
IRBP; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 48
Score = 51.5 bits (124), Expect = 2e-09
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 204 HRRSHTGEKPYKC--ELCSYACAQSSKLTRHMKTH 236
S TGEKP+ C C + ++S +L+RH ++H
Sbjct: 3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSH 37
Score = 48.1 bits (115), Expect = 4e-08
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 109 AHRRNHTGEKPFKCTV--CDHACSQSAKLKKHMKIH 142
+ + TGEKPF CT C S+S +L +H + H
Sbjct: 2 SSGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSH 37
Score = 46.1 bits (110), Expect = 2e-07
Identities = 12/29 (41%), Positives = 14/29 (48%)
Query: 189 EFCGKVFKNCSNLTVHRRSHTGEKPYKCE 217
CG F L+ HRRSH+G KP
Sbjct: 18 PGCGWRFSRSDELSRHRRSHSGVKPSGPS 46
Score = 45.0 bits (107), Expect = 5e-07
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 89 EKNKECEF--CGKKFKYENTLQAHRRNHTGEKPFKCT 123
EK C + CG +F + L HRR+H+G KP +
Sbjct: 10 EKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPS 46
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 51.4 bits (124), Expect = 2e-09
Identities = 14/35 (40%), Positives = 15/35 (42%)
Query: 204 HRRSHTGEKPYKCELCSYACAQSSKLTRHMKTHGR 238
S T K Y C C A + LTRH K H R
Sbjct: 3 SGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTR 37
Score = 47.2 bits (113), Expect = 7e-08
Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 7/48 (14%)
Query: 110 HRRNHTGEKPFKCTVCDHACSQSAKLKKHMKIHDEDGDKEDREEGPSA 157
+ T K + C C A ++ L +H KIH R+ GPS+
Sbjct: 3 SGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIH-------TRKSGPSS 43
Score = 43.3 bits (103), Expect = 2e-06
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKPYKC 216
C CGK F +LT H++ HT +
Sbjct: 15 CNECGKAFTRIFHLTRHQKIHTRKSGPSS 43
Score = 36.0 bits (84), Expect = 8e-04
Identities = 10/34 (29%), Positives = 14/34 (41%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKPFKC 122
K+ C CGK F L H++ HT +
Sbjct: 10 SKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSS 43
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 95
Score = 52.7 bits (126), Expect = 3e-09
Identities = 20/109 (18%), Positives = 26/109 (23%), Gaps = 39/109 (35%)
Query: 113 NHTGEKPFKCTVCDHACSQSAKLKKHMKIHDEDGDKEDREEGPSASSLAAAAAAAALNLC 172
+ CD S +L H+
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVT-------------------------------- 46
Query: 173 LPNSHMKKESRRNDTCEF-----CGKVFKNCSNLTVHRRSHTGEKPYKC 216
H+ + N C + GK FK L H R HTGEK
Sbjct: 47 --MEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKSGPS 93
Score = 47.3 bits (112), Expect = 3e-07
Identities = 11/59 (18%), Positives = 18/59 (30%), Gaps = 9/59 (15%)
Query: 187 TCEFCGKVFKNCSNLTVH-RRSHTGEKPYKCELCSY--------ACAQSSKLTRHMKTH 236
+ C + F L H H G +C + + KL H++ H
Sbjct: 27 PKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVH 85
Score = 44.6 bits (105), Expect = 2e-06
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 92 KECEFCGKKFKYENTLQAHRRNHTGEKPFKCT 123
+EC GK FK + L H R HTGEK +
Sbjct: 63 EECPREGKSFKAKYKLVNHIRVHTGEKSGPSS 94
Score = 43.8 bits (103), Expect = 4e-06
Identities = 11/65 (16%), Positives = 22/65 (33%), Gaps = 9/65 (13%)
Query: 87 QEEKNKECEFCGKKFKYENTLQAH-RRNHTGEKPFK--------CTVCDHACSQSAKLKK 137
+ + ++ + C + F + L H H G C + KL
Sbjct: 21 EAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVN 80
Query: 138 HMKIH 142
H+++H
Sbjct: 81 HIRVH 85
Score = 40.0 bits (93), Expect = 8e-05
Identities = 10/64 (15%), Positives = 20/64 (31%), Gaps = 7/64 (10%)
Query: 208 HTGEKPYKCELCSYACAQSSKLTRHM-KTH-GRLGKDVYRCRF-----CEMPFSVPSTLE 260
+ + C + +L H+ H G ++ + C + F L
Sbjct: 20 DEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLV 79
Query: 261 KHMR 264
H+R
Sbjct: 80 NHIR 83
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 50.6 bits (122), Expect = 4e-09
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKPYKC 216
C CGK F S+L H + H EK
Sbjct: 15 CNECGKNFGRHSHLIEHLKRHFREKSSGP 43
Score = 49.8 bits (120), Expect = 9e-09
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 204 HRRSHTGEKPYKCELCSYACAQSSKLTRHMKTH 236
S +GE+PY C C + S L H+K H
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLKRH 35
Score = 47.1 bits (113), Expect = 8e-08
Identities = 11/35 (31%), Positives = 15/35 (42%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKPFKCT 123
E+ C CGK F + L H + H EK +
Sbjct: 10 ERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGPS 44
Score = 45.6 bits (109), Expect = 3e-07
Identities = 9/33 (27%), Positives = 17/33 (51%)
Query: 110 HRRNHTGEKPFKCTVCDHACSQSAKLKKHMKIH 142
+ +GE+P+ C C + + L +H+K H
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLKRH 35
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 41
Score = 49.5 bits (119), Expect = 1e-08
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKPY 214
C+ CGK F+ +LT+H R HTG P
Sbjct: 13 CQECGKSFRQKGSLTLHERIHTGSGPS 39
Score = 44.5 bits (106), Expect = 7e-07
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 206 RSHTGEKPYKCELCSYACAQSSKLTRHMKTH 236
+G++ Y+C+ C + Q LT H + H
Sbjct: 3 SGSSGQRVYECQECGKSFRQKGSLTLHERIH 33
Score = 42.9 bits (102), Expect = 2e-06
Identities = 15/38 (39%), Positives = 22/38 (57%)
Query: 83 STTSQEEKNKECEFCGKKFKYENTLQAHRRNHTGEKPF 120
S+ S ++ EC+ CGK F+ + +L H R HTG P
Sbjct: 2 SSGSSGQRVYECQECGKSFRQKGSLTLHERIHTGSGPS 39
Score = 42.2 bits (100), Expect = 4e-06
Identities = 8/31 (25%), Positives = 15/31 (48%)
Query: 112 RNHTGEKPFKCTVCDHACSQSAKLKKHMKIH 142
+G++ ++C C + Q L H +IH
Sbjct: 3 SGSSGQRVYECQECGKSFRQKGSLTLHERIH 33
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 49.4 bits (119), Expect = 1e-08
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 204 HRRSHTGEKPYKCELCSYACAQSSKLTRHMKTH 236
S TGE PY+C C ++ +L H KTH
Sbjct: 3 SGSSGTGENPYECCECGKVFSRKDQLVSHQKTH 35
Score = 49.0 bits (118), Expect = 2e-08
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKPYKC 216
C CGKVF L H+++H+G+
Sbjct: 15 CCECGKVFSRKDQLVSHQKTHSGQSGPSS 43
Score = 45.6 bits (109), Expect = 3e-07
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 109 AHRRNHTGEKPFKCTVCDHACSQSAKLKKHMKIH 142
+ + TGE P++C C S+ +L H K H
Sbjct: 2 SSGSSGTGENPYECCECGKVFSRKDQLVSHQKTH 35
Score = 43.6 bits (104), Expect = 1e-06
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKPFKC 122
E EC CGK F ++ L +H++ H+G+
Sbjct: 10 ENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSS 43
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 49.5 bits (119), Expect = 1e-08
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 187 TCEFCGKVFKNCSNLTVHRRSHTGEKPYKCE 217
TC+ CGK F S L +H+R H GEK
Sbjct: 14 TCDECGKNFCYISALRIHQRVHMGEKCSGPS 44
Score = 46.8 bits (112), Expect = 1e-07
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 204 HRRSHTGEKPYKCELCSYACAQSSKLTRHMKTH 236
S +GEK + C+ C S L H + H
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVH 35
Score = 45.7 bits (109), Expect = 3e-07
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKPFKCT 123
EK+ C+ CGK F Y + L+ H+R H GEK +
Sbjct: 10 EKSHTCDECGKNFCYISALRIHQRVHMGEKCSGPS 44
Score = 43.0 bits (102), Expect = 2e-06
Identities = 8/33 (24%), Positives = 14/33 (42%)
Query: 110 HRRNHTGEKPFKCTVCDHACSQSAKLKKHMKIH 142
+ +GEK C C + L+ H ++H
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVH 35
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 48.7 bits (117), Expect = 2e-08
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKPYKC 216
C CG+ F S+L H+R HTGEKP
Sbjct: 15 CHECGRGFTLKSHLNQHQRIHTGEKPSGP 43
Score = 48.3 bits (116), Expect = 3e-08
Identities = 8/33 (24%), Positives = 13/33 (39%)
Query: 204 HRRSHTGEKPYKCELCSYACAQSSKLTRHMKTH 236
S + K ++C C S L +H + H
Sbjct: 3 SGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIH 35
Score = 46.8 bits (112), Expect = 1e-07
Identities = 7/33 (21%), Positives = 14/33 (42%)
Query: 110 HRRNHTGEKPFKCTVCDHACSQSAKLKKHMKIH 142
+ + K +C C + + L +H +IH
Sbjct: 3 SGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIH 35
Score = 45.6 bits (109), Expect = 3e-07
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKPFKCT 123
K+ +C CG+ F ++ L H+R HTGEKP +
Sbjct: 10 TKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGPS 44
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 47
Score = 48.7 bits (117), Expect = 2e-08
Identities = 14/30 (46%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 188 CEFCGKVFKNCSNLTVHRRS-HTGEKPYKC 216
C CGK F ++L H R HTGEKP
Sbjct: 15 CIECGKAFIQNTSLIRHWRYYHTGEKPSGP 44
Score = 48.3 bits (116), Expect = 3e-08
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 204 HRRSHTGEKPYKCELCSYACAQSSKLTRH 232
S TG+KPY+C C A Q++ L RH
Sbjct: 3 SGSSGTGKKPYECIECGKAFIQNTSLIRH 31
Score = 44.5 bits (106), Expect = 8e-07
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRN-HTGEKPFKCT 123
+K EC CGK F +L H R HTGEKP +
Sbjct: 10 KKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGPS 45
Score = 44.1 bits (105), Expect = 1e-06
Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 109 AHRRNHTGEKPFKCTVCDHACSQSAKLKKHM-KIH 142
+ + TG+KP++C C A Q+ L +H H
Sbjct: 2 SSGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYH 36
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Length = 42
Score = 46.5 bits (111), Expect = 1e-07
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 187 TCEFCGKVFKNCSNLTVHRRSHTGEKPYK 215
C CGK F +L VH+RS + P
Sbjct: 13 LCGQCGKSFTQRGSLAVHQRSCSQSGPSS 41
Score = 45.0 bits (107), Expect = 4e-07
Identities = 10/33 (30%), Positives = 13/33 (39%)
Query: 204 HRRSHTGEKPYKCELCSYACAQSSKLTRHMKTH 236
S GE PY C C + Q L H ++
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSC 34
Score = 45.0 bits (107), Expect = 5e-07
Identities = 8/34 (23%), Positives = 13/34 (38%)
Query: 109 AHRRNHTGEKPFKCTVCDHACSQSAKLKKHMKIH 142
+ GE P+ C C + +Q L H +
Sbjct: 1 GSSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSC 34
Score = 41.9 bits (99), Expect = 5e-06
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKPFK 121
E C CGK F +L H+R+ + P
Sbjct: 9 ETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPSS 41
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 73
Score = 46.2 bits (109), Expect = 4e-07
Identities = 12/66 (18%), Positives = 20/66 (30%), Gaps = 9/66 (13%)
Query: 199 SNLTVHRRSHTGEKPYKCELCSYACAQSSKLTRHMKTHGRLGKDVYRCRFCEMPFSVPST 258
+ ++ H G++ KC C + S L+R C C +
Sbjct: 4 GSSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSRRKT---------PMCEKCRKDSCQEAA 54
Query: 259 LEKHMR 264
L K
Sbjct: 55 LNKDEG 60
Score = 42.3 bits (99), Expect = 9e-06
Identities = 13/109 (11%), Positives = 27/109 (24%), Gaps = 45/109 (41%)
Query: 106 TLQAHRRNHTGEKPFKCTVCDHACSQSAKLKKHMKIHDEDGDKEDREEGPSASSLAAAAA 165
+ ++ H G++ KC+ C + + L +
Sbjct: 5 SSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSRR--------------------------- 37
Query: 166 AAALNLCLPNSHMKKESRRNDTCEFCGKVFKNCSNLTVHRRSHTGEKPY 214
+ CE C K + L + +G+K
Sbjct: 38 ------------------KTPMCEKCRKDSCQEAALNKDEGNESGKKTS 68
Score = 39.6 bits (92), Expect = 7e-05
Identities = 12/54 (22%), Positives = 18/54 (33%), Gaps = 7/54 (12%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKPFKCTVCDHACSQSAKLKKHMKIH 142
+++++C CG F R + K C C Q A L K
Sbjct: 16 DRSQKCSKCGIIF-------IRRSTLSRRKTPMCEKCRKDSCQEAALNKDEGNE 62
Score = 38.1 bits (88), Expect = 2e-04
Identities = 11/50 (22%), Positives = 17/50 (34%), Gaps = 7/50 (14%)
Query: 187 TCEFCGKVFKNCSNLTVHRRSHTGEKPYKCELCSYACAQSSKLTRHMKTH 236
C CG +F + R + + K CE C Q + L +
Sbjct: 20 KCSKCGIIF-------IRRSTLSRRKTPMCEKCRKDSCQEAALNKDEGNE 62
Score = 36.2 bits (83), Expect = 0.001
Identities = 11/42 (26%), Positives = 15/42 (35%)
Query: 79 SYAMSTTSQEEKNKECEFCGKKFKYENTLQAHRRNHTGEKPF 120
+ +T K CE C K E L N +G+K
Sbjct: 27 IFIRRSTLSRRKTPMCEKCRKDSCQEAALNKDEGNESGKKTS 68
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 44.6 bits (106), Expect = 6e-07
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 206 RSHTGEKPYKCELCSYACAQSSKLTRHMKTH 236
+GEKPY C C + +++L +H K H
Sbjct: 3 SGSSGEKPYSCAECKETFSDNNRLVQHQKMH 33
Score = 42.7 bits (101), Expect = 2e-06
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 114 HTGEKPFKCTVCDHACSQSAKLKKHMKIH 142
+GEKP+ C C S + +L +H K+H
Sbjct: 5 SSGEKPYSCAECKETFSDNNRLVQHQKMH 33
Score = 40.0 bits (94), Expect = 3e-05
Identities = 7/30 (23%), Positives = 14/30 (46%)
Query: 187 TCEFCGKVFKNCSNLTVHRRSHTGEKPYKC 216
+C C + F + + L H++ HT +
Sbjct: 12 SCAECKETFSDNNRLVQHQKMHTVKSGPSS 41
Score = 37.7 bits (88), Expect = 2e-04
Identities = 12/40 (30%), Positives = 17/40 (42%)
Query: 83 STTSQEEKNKECEFCGKKFKYENTLQAHRRNHTGEKPFKC 122
S+ S EK C C + F N L H++ HT +
Sbjct: 2 SSGSSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSS 41
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 44
Score = 44.5 bits (105), Expect = 7e-07
Identities = 13/35 (37%), Positives = 17/35 (48%)
Query: 204 HRRSHTGEKPYKCELCSYACAQSSKLTRHMKTHGR 238
S GE P+KC C Q + L +H +TH R
Sbjct: 3 SGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHAR 37
Score = 44.1 bits (104), Expect = 1e-06
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 7/49 (14%)
Query: 109 AHRRNHTGEKPFKCTVCDHACSQSAKLKKHMKIHDEDGDKEDREEGPSA 157
+ + GE PFKC+ CD +Q L +H + H R+ GPS+
Sbjct: 2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTH-------ARKSGPSS 43
Score = 34.1 bits (78), Expect = 0.004
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKP 213
C C +VF + L H R+H +
Sbjct: 15 CSKCDRVFTQRNYLVQHERTHARKSG 40
Score = 33.7 bits (77), Expect = 0.005
Identities = 9/36 (25%), Positives = 14/36 (38%)
Query: 84 TTSQEEKNKECEFCGKKFKYENTLQAHRRNHTGEKP 119
++ E +C C + F N L H R H +
Sbjct: 5 SSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKSG 40
>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase,
methyltransferase, guanylyltransferase, zinc finger,
icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
PDB: 2cse_V
Length = 1275
Score = 44.5 bits (104), Expect = 4e-05
Identities = 23/191 (12%), Positives = 58/191 (30%), Gaps = 6/191 (3%)
Query: 18 TSPQTMNNNNNNSSMSNNNNICFESPSGTLEKELQRPKSPTNKIADLSSSTSPSKQEDFQ 77
++ ++ + ++ NN + GT +E R + + + S + + +
Sbjct: 19 STERSDDGSSQLRDKQNNKAGPATTEPGTSNREQYRARPGIASVQRATESAELPMKNNDE 78
Query: 78 LSYAMSTTSQEEKNKECEFCGKKFKYENTLQAHRRNHTGEKPFKCTVCDHACSQSAKLKK 137
+ ++ + E + QA + + + + ++ ++
Sbjct: 79 GTPDKKGNTRGDLVNEHSEAKDEADEATQKQAKDTDKSKAQVTYSDTGINNANELSRSGN 138
Query: 138 HMKIHDEDGDKEDREEGPSASSLAAAAAAAALNLCLPNSHMKKESRRNDTCEFCGKVFKN 197
D +G + S A +A + + S C C V +
Sbjct: 139 V----DNEGGSNQKP--MSTRIAEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFS 192
Query: 198 CSNLTVHRRSH 208
+L H SH
Sbjct: 193 PLDLDAHVASH 203
Score = 41.4 bits (96), Expect = 4e-04
Identities = 28/215 (13%), Positives = 50/215 (23%), Gaps = 15/215 (6%)
Query: 26 NNNNSSMSNNNNICFESPSGTLEKELQRPKSPTNKIADLSSSTSPSKQEDFQLSYAMSTT 85
SS N++ + ++ Q K+ ++T P Q
Sbjct: 8 TKGKSSGKGNDSTERSDDGSSQLRDKQNNKAG-------PATTEPGTSNREQYRARPGIA 60
Query: 86 SQEEKNKECEFCGKKFKYENTLQAHRRNHTGEKPFKCTVCDHACSQSAKLKKHMKIHDED 145
S + + E K E T D A + K K
Sbjct: 61 SVQRATESAELPMKNND-EGTPDKKGNTRGDLVNEHSEAKDEADEATQKQAKDTDKSKAQ 119
Query: 146 GDKEDREEGPSASSLAAAAAAAALNLCLPNSHMKKESRRNDTCEFCGKVFKNCSNLTVHR 205
D + + ++ E +
Sbjct: 120 VTYSDTGINNANELSRSGNVD-------NEGGSNQKPMSTRIAEATSAIVSKHPARVGLP 172
Query: 206 RSHTGEKPYKCELCSYACAQSSKLTRHMKTHGRLG 240
+ + Y+C +CS L H+ +HG G
Sbjct: 173 PTASSGHGYQCHVCSAVLFSPLDLDAHVASHGLHG 207
Score = 40.2 bits (93), Expect = 0.001
Identities = 12/142 (8%), Positives = 33/142 (23%), Gaps = 2/142 (1%)
Query: 6 TSPNSGTPLGLITSPQTMNNNNNNSSMSNNNNICFESPSGTLEKELQRPKSPTNKIADLS 65
+ + + S + E+ + + T ++
Sbjct: 69 AELPMKNNDEGTPDKKGNTRGDLVNEHSEAKDEADEATQKQAKDTDKSKAQVTYSDTGIN 128
Query: 66 SSTSPSKQEDFQLSYAMSTTSQEEKNKECEFCGKKFKYENTLQAHRRNHTGEKPFKCTVC 125
++ S+ + + + + E + ++C VC
Sbjct: 129 NANELSRSG--NVDNEGGSNQKPMSTRIAEATSAIVSKHPARVGLPPTASSGHGYQCHVC 186
Query: 126 DHACSQSAKLKKHMKIHDEDGD 147
L H+ H G+
Sbjct: 187 SAVLFSPLDLDAHVASHGLHGN 208
Score = 27.9 bits (61), Expect = 5.7
Identities = 10/40 (25%), Positives = 19/40 (47%)
Query: 244 YRCRFCEMPFSVPSTLEKHMRKCVVNQNMKMESHNIMQNM 283
Y+C C P L+ H+ ++ NM + S I +++
Sbjct: 181 YQCHVCSAVLFSPLDLDAHVASHGLHGNMTLTSSEIQRHI 220
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers,
4-stranded parallel/anti-parallel beta- sheet,
structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1
Length = 102
Score = 40.5 bits (94), Expect = 7e-05
Identities = 17/96 (17%), Positives = 37/96 (38%), Gaps = 7/96 (7%)
Query: 199 SNLTVHRRSHTGEKPYKCELCSYACAQSSKLTRHMKT-HGRLGKD-VYRCRFCEMPFSVP 256
+ ++++ E Y+C+ C++ + T H+ + H + + Y C C
Sbjct: 4 HHHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRY 63
Query: 257 STLEKHMRKCVVNQNMKMESHNIMQNMKMDNHNIIQ 292
L +H K E + + +K +N I +
Sbjct: 64 DALSEHNLKYHPG-----EENFKLTMVKRNNQTIFE 94
Score = 29.7 bits (66), Expect = 0.44
Identities = 15/115 (13%), Positives = 30/115 (26%), Gaps = 35/115 (30%)
Query: 105 NTLQAHRRNHTGEKPFKCTVCDHACSQSAKLKKHMKIHDEDGDKEDREEGPSASSLAAAA 164
+ +++N E ++C C H+
Sbjct: 4 HHHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVD------------------------ 39
Query: 165 AAAALNLCLPNSHMKKESRRNDTCEFCGKVFKNCSNLTVH-RRSHTGEKPYKCEL 218
+ H + C C + K L+ H + H GE+ +K +
Sbjct: 40 ----------SEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYHPGEENFKLTM 84
Score = 27.8 bits (61), Expect = 2.3
Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 94 CEFCGKKFKYENTLQAH-RRNHTGEKPFKCTV 124
C C K + L H + H GE+ FK T+
Sbjct: 53 CVECNFLTKRYDALSEHNLKYHPGEENFKLTM 84
>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding
protein; NMR {Homo sapiens}
Length = 37
Score = 37.7 bits (88), Expect = 2e-04
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 181 ESRRNDTCEF--CGKVFKNCSNLTVHRRSHTGEK 212
++ C CGKV+ S+L H R HTGE+
Sbjct: 4 GKKKQHICHIQGCGKVYGKTSHLRAHLRWHTGER 37
Score = 32.7 bits (75), Expect = 0.009
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 86 SQEEKNKECEF--CGKKFKYENTLQAHRRNHTGEK 118
++K C CGK + + L+AH R HTGE+
Sbjct: 3 PGKKKQHICHIQGCGKVYGKTSHLRAHLRWHTGER 37
Score = 24.6 bits (54), Expect = 7.2
Identities = 7/30 (23%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
Query: 209 TGEKPYKCEL--CSYACAQSSKLTRHMKTH 236
+K + C + C ++S L H++ H
Sbjct: 4 GKKKQHICHIQGCGKVYGKTSHLRAHLRWH 33
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 36.8 bits (84), Expect = 3e-04
Identities = 16/29 (55%), Positives = 21/29 (72%)
Query: 90 KNKECEFCGKKFKYENTLQAHRRNHTGEK 118
K CE+C K FK++++LQAH R HT EK
Sbjct: 8 KIFTCEYCNKVFKFKHSLQAHLRIHTNEK 36
Score = 33.7 bits (76), Expect = 0.005
Identities = 15/26 (57%), Positives = 17/26 (65%)
Query: 187 TCEFCGKVFKNCSNLTVHRRSHTGEK 212
TCE+C KVFK +L H R HT EK
Sbjct: 11 TCEYCNKVFKFKHSLQAHLRIHTNEK 36
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens}
SCOP: g.37.1.1 PDB: 1va2_A
Length = 31
Score = 36.0 bits (84), Expect = 5e-04
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 189 EFCGKVFKNCSNLTVHRRSHTGEK 212
+CGK F L H+R+HTGEK
Sbjct: 8 SYCGKRFTRSDELQRHKRTHTGEK 31
Score = 34.1 bits (79), Expect = 0.002
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 95 EFCGKKFKYENTLQAHRRNHTGEK 118
+CGK+F + LQ H+R HTGEK
Sbjct: 8 SYCGKRFTRSDELQRHKRTHTGEK 31
Score = 30.7 bits (70), Expect = 0.036
Identities = 9/27 (33%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Query: 212 KPYKC--ELCSYACAQSSKLTRHMKTH 236
+P+ C C +S +L RH +TH
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTH 27
Score = 27.2 bits (61), Expect = 0.79
Identities = 9/27 (33%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Query: 118 KPFKCTV--CDHACSQSAKLKKHMKIH 142
+PF CT C ++S +L++H + H
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTH 27
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 38.0 bits (87), Expect = 0.001
Identities = 22/121 (18%), Positives = 33/121 (27%), Gaps = 17/121 (14%)
Query: 133 AKLKKHMKIHDEDGDKEDREEGPSASSLAAAAA---AAALNLCLPNSHMKKESRRND--- 186
+ KK++ H EE L A + + N + ES
Sbjct: 8 SGSKKYLSNHKGIFIHVTLEELKRYHQLTPEQKRLIRAIVKTLIHNPQLLDESSYLYRLL 67
Query: 187 --------TCEFCGKVFKNCSNLTVHRRSHTGEKPYKCELCSYACAQSSKLTRHM-KTHG 237
C C F + +L H R E C +C + H+ K H
Sbjct: 68 ASKAISQFVCPLCLMPFSSSVSLKQHIRYT--EHTKVCPVCKKEFTSTDSALDHVCKKHN 125
Query: 238 R 238
Sbjct: 126 I 126
Score = 34.1 bits (77), Expect = 0.017
Identities = 12/59 (20%), Positives = 18/59 (30%), Gaps = 2/59 (3%)
Query: 82 MSTTSQEEKNKECEFCGKKFKYENTLQAHRRNHTGEKPFKCTVCDHACSQSAKLKKHMK 140
S+ C C F +L+ H R E C VC + + H+
Sbjct: 65 RLLASKAISQFVCPLCLMPFSSSVSLKQHIRYT--EHTKVCPVCKKEFTSTDSALDHVC 121
Score = 31.1 bits (69), Expect = 0.21
Identities = 9/46 (19%), Positives = 16/46 (34%)
Query: 97 CGKKFKYENTLQAHRRNHTGEKPFKCTVCDHACSQSAKLKKHMKIH 142
+ E++ F C +C S S LK+H++
Sbjct: 52 HNPQLLDESSYLYRLLASKAISQFVCPLCLMPFSSSVSLKQHIRYT 97
Score = 28.4 bits (62), Expect = 2.0
Identities = 7/28 (25%), Positives = 10/28 (35%)
Query: 87 QEEKNKECEFCGKKFKYENTLQAHRRNH 114
E K C C K+F ++ H
Sbjct: 96 YTEHTKVCPVCKKEFTSTDSALDHVCKK 123
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A
1are_A
Length = 29
Score = 35.4 bits (82), Expect = 0.001
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEK 212
CE C + F +L H RSHT EK
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 32.7 bits (75), Expect = 0.007
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 94 CEFCGKKFKYENTLQAHRRNHTGEK 118
CE C + F + L+ H R+HT EK
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 30.0 bits (68), Expect = 0.070
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 212 KPYKCELCSYACAQSSKLTRHMKTH 236
+ + CE+C+ A A+ L RH ++H
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSH 25
Score = 27.3 bits (61), Expect = 0.65
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 118 KPFKCTVCDHACSQSAKLKKHMKIH 142
+ F C VC A ++ LK+H + H
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSH 25
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid
binding, KIAA1227 protein, structural genomics; NMR
{Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 107
Score = 36.4 bits (83), Expect = 0.002
Identities = 12/61 (19%), Positives = 26/61 (42%), Gaps = 4/61 (6%)
Query: 210 GEKPYKCELCSYACAQSSKLTRHMKTHGRLGKDVYRCRFCEMPFSVPSTLEKHMRKCVVN 269
++ Y+C LC+ + + H + ++ C +C + F P ++H KC
Sbjct: 13 NKEVYQCRLCNAKLSSLLEQGSHERLC----RNAAVCPYCSLRFFSPELKQEHESKCEYK 68
Query: 270 Q 270
+
Sbjct: 69 K 69
Score = 32.2 bits (72), Expect = 0.058
Identities = 11/58 (18%), Positives = 21/58 (36%), Gaps = 2/58 (3%)
Query: 89 EKNKECEFCGKKFKYENTLQAHRRNHTGEKPFKCTVCDHACSQSAKLKKH-MKIHDED 145
C +C +F Q H K C C S + +H +++H+++
Sbjct: 40 RNAAVCPYCSLRFFSPELKQEHES-KCEYKKLTCLECMRTFKSSFSIWRHQVEVHNQN 96
Score = 31.8 bits (71), Expect = 0.097
Identities = 17/103 (16%), Positives = 25/103 (24%), Gaps = 6/103 (5%)
Query: 177 HMKKESRRNDTCEFCGKVFKNCSNLTVHRRSHTGEKPYKCELCSYACAQSSKLTRHMKTH 236
E++ C C + H R C CS H
Sbjct: 8 ASPVENKEVYQCRLCNAKLSSLLEQGSHERLC--RNAAVCPYCSLRFFSPELKQEHESKC 65
Query: 237 GRLGKDVYRCRFCEMPFSVPSTLEKHMRKCVVNQNMKMESHNI 279
C C F ++ +H + V NQN +
Sbjct: 66 ---EYKKLTCLECMRTFKSSFSIWRH-QVEVHNQNNMAPTSGP 104
Score = 28.3 bits (62), Expect = 1.4
Identities = 13/99 (13%), Positives = 34/99 (34%), Gaps = 13/99 (13%)
Query: 109 AHRRNHTGEKPFKCTVCDHACSQSAKLKKHMKIHDEDGDKEDREEGPSASSLAAAAAAAA 168
+ ++ ++C +C+ S + H ++ +++ +
Sbjct: 6 SGASPVENKEVYQCRLCNAKLSSLLEQGSHERLCRN-------------AAVCPYCSLRF 52
Query: 169 LNLCLPNSHMKKESRRNDTCEFCGKVFKNCSNLTVHRRS 207
+ L H K + TC C + FK+ ++ H+
Sbjct: 53 FSPELKQEHESKCEYKKLTCLECMRTFKSSFSIWRHQVE 91
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 32.9 bits (74), Expect = 0.007
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 207 SHTGEKPYKCELCSYACAQSSKLTRHMKTH 236
S + KPYKC CSYA A + L H++ H
Sbjct: 3 SGSSGKPYKCPQCSYASAIKANLNVHLRKH 32
Score = 29.8 bits (66), Expect = 0.11
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 115 TGEKPFKCTVCDHACSQSAKLKKHMKIH 142
+ KP+KC C +A + A L H++ H
Sbjct: 5 SSGKPYKCPQCSYASAIKANLNVHLRKH 32
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription;
NMR {Mus musculus} SCOP: g.37.1.1
Length = 35
Score = 32.8 bits (74), Expect = 0.008
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 208 HTGEKPYKCELCSYACAQSSKLTRHMKTH 236
+G++P+ C +C A + RH+K H
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVH 30
Score = 32.8 bits (74), Expect = 0.008
Identities = 10/31 (32%), Positives = 19/31 (61%)
Query: 114 HTGEKPFKCTVCDHACSQSAKLKKHMKIHDE 144
+G++PF C +C A + A +H+K+H +
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVHTD 32
Score = 26.6 bits (58), Expect = 1.4
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 237 GRLGKDVYRCRFCEMPFSVPSTLEKHMR 264
G GK + CR C F+ + +H++
Sbjct: 1 GSSGKRPFVCRICLSAFTTKANCARHLK 28
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 31.7 bits (71), Expect = 0.020
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 84 TTSQEEKNKECEFCGKKFKYENTLQAHRRNHTGE 117
++ K C+ CGKKFK + TL++H+ HT +
Sbjct: 2 SSGSSGKTHLCDMCGKKFKSKGTLKSHKLLHTAD 35
Score = 25.9 bits (56), Expect = 2.5
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 182 SRRNDTCEFCGKVFKNCSNLTVHRRSHTGE 211
S + C+ CGK FK+ L H+ HT +
Sbjct: 6 SGKTHLCDMCGKKFKSKGTLKSHKLLHTAD 35
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger,
transcription; NMR {Homo sapiens}
Length = 29
Score = 31.3 bits (70), Expect = 0.024
Identities = 14/25 (56%), Positives = 15/25 (60%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEK 212
C CGK F S+L H R HTGEK
Sbjct: 5 CVMCGKAFTQASSLIAHVRQHTGEK 29
Score = 30.5 bits (68), Expect = 0.052
Identities = 14/25 (56%), Positives = 16/25 (64%)
Query: 94 CEFCGKKFKYENTLQAHRRNHTGEK 118
C CGK F ++L AH R HTGEK
Sbjct: 5 CVMCGKAFTQASSLIAHVRQHTGEK 29
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 45
Score = 31.4 bits (70), Expect = 0.032
Identities = 12/41 (29%), Positives = 19/41 (46%)
Query: 114 HTGEKPFKCTVCDHACSQSAKLKKHMKIHDEDGDKEDREEG 154
+GEKP+ C VC + ++ H++ HD K G
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKSGPSSG 45
Score = 30.7 bits (68), Expect = 0.065
Identities = 9/31 (29%), Positives = 18/31 (58%)
Query: 208 HTGEKPYKCELCSYACAQSSKLTRHMKTHGR 238
+GEKPY C +C + +++ H+++H
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHDG 35
Score = 28.0 bits (61), Expect = 0.66
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 83 STTSQEEKNKECEFCGKKFKYENTLQAHRRNHTG 116
S+ S EK C CG +FK ++ + H R+H G
Sbjct: 2 SSGSSGEKPYSCPVCGLRFKRKDRMSYHVRSHDG 35
>3iyl_X VP3; non-enveloped virus, membrane penetration protein, autocleav
myristol group, icosahedral virus; HET: MYR; 3.30A
{Grass carp reovirus} PDB: 3k1q_C 3k1q_B
Length = 1214
Score = 35.2 bits (80), Expect = 0.038
Identities = 24/113 (21%), Positives = 42/113 (37%), Gaps = 2/113 (1%)
Query: 2 SPPYTSPNSGTPLGLITSPQTMNNNNNNSSMSNNNNICFESPSGTLEKELQRPKSPT-NK 60
+P SP S T + SS S N + +PS ++ + PT +
Sbjct: 27 APTTNSPPSTTSPNQAAADANQQQAGIVSSQSGPNAVGDSAPSSSVNNDGDIITRPTSDS 86
Query: 61 IADLSSSTSPSKQEDFQLSYAMSTTSQEEKNKECEFCGKKFKYENTLQAHRRN 113
IA ++++T P+ S ++ C C +F + L H R+
Sbjct: 87 IAAVANATKPAAVVSDPQSMKVTPIVNPSSYV-CNVCNARFSTMSALSEHLRS 138
Score = 29.4 bits (65), Expect = 2.2
Identities = 17/66 (25%), Positives = 26/66 (39%), Gaps = 1/66 (1%)
Query: 143 DEDGDKEDREEGPSASSLAAAAAAAALNLCLPNSHMKKESRRND-TCEFCGKVFKNCSNL 201
+ DGD R S +++A A AA+ + + + C C F S L
Sbjct: 73 NNDGDIITRPTSDSIAAVANATKPAAVVSDPQSMKVTPIVNPSSYVCNVCNARFSTMSAL 132
Query: 202 TVHRRS 207
+ H RS
Sbjct: 133 SEHLRS 138
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger,
classical zinc finger, transcription; NMR {Homo sapiens}
Length = 30
Score = 30.5 bits (68), Expect = 0.051
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 93 ECEFCGKKFKYENTLQAHRRNHTGEK 118
C C ++F LQ H R HTGEK
Sbjct: 5 VCIHCQRQFADPGALQRHVRIHTGEK 30
Score = 30.1 bits (67), Expect = 0.062
Identities = 11/25 (44%), Positives = 13/25 (52%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEK 212
C C + F + L H R HTGEK
Sbjct: 6 CIHCQRQFADPGALQRHVRIHTGEK 30
Score = 27.0 bits (59), Expect = 0.80
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 244 YRCRFCEMPFSVPSTLEKHMR 264
Y C C+ F+ P L++H+R
Sbjct: 4 YVCIHCQRQFADPGALQRHVR 24
Score = 27.0 bits (59), Expect = 0.89
Identities = 10/25 (40%), Positives = 12/25 (48%)
Query: 212 KPYKCELCSYACAQSSKLTRHMKTH 236
KPY C C A L RH++ H
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIH 26
Score = 27.0 bits (59), Expect = 0.97
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 118 KPFKCTVCDHACSQSAKLKKHMKIH 142
KP+ C C + L++H++IH
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIH 26
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 30.2 bits (67), Expect = 0.098
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 207 SHTGEKPYKCELCSYACAQSSKLTRHMKTHGR 238
S EK +KC C + S LT+H + H R
Sbjct: 6 SGQKEKCFKCNKCEKTFSCSKYLTQHERIHTR 37
Score = 29.0 bits (64), Expect = 0.21
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 113 NHTGEKPFKCTVCDHACSQSAKLKKHMKIH 142
+ EK FKC C+ S S L +H +IH
Sbjct: 6 SGQKEKCFKCNKCEKTFSCSKYLTQHERIH 35
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.2 bits (72), Expect = 0.11
Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 11/36 (30%)
Query: 131 QS-AKLKKHMKIHDEDGDKEDREEGPSASSLAAAAA 165
Q+ KL+ +K++ +D SA +LA A
Sbjct: 20 QALKKLQASLKLYADD----------SAPALAIKAT 45
>3ray_A PR domain-containing protein 11; structural genomics consortium,
SGC, histone methylation, Zn transcriptional regulation,
chromatin, transcription; 1.73A {Homo sapiens}
Length = 237
Score = 32.5 bits (73), Expect = 0.13
Identities = 8/49 (16%), Positives = 15/49 (30%)
Query: 94 CEFCGKKFKYENTLQAHRRNHTGEKPFKCTVCDHACSQSAKLKKHMKIH 142
E K+ + HR GEK + + L+ + +
Sbjct: 183 SEDYMKRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGPIHLS 231
Score = 28.6 bits (63), Expect = 2.4
Identities = 11/49 (22%), Positives = 15/49 (30%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEKPYKCELCSYACAQSSKLTRHMKTH 236
E K + S T+HR GEK + E L +
Sbjct: 183 SEDYMKRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGPIHLS 231
Score = 27.9 bits (61), Expect = 4.8
Identities = 4/38 (10%), Positives = 10/38 (26%)
Query: 81 AMSTTSQEEKNKECEFCGKKFKYENTLQAHRRNHTGEK 118
++ EK + E + L+ +
Sbjct: 198 IHRNLARGEKRLQREKSEQVLDNPEDLRGPIHLSVLRQ 235
Score = 27.9 bits (61), Expect = 5.0
Identities = 8/51 (15%), Positives = 14/51 (27%)
Query: 220 SYACAQSSKLTRHMKTHGRLGKDVYRCRFCEMPFSVPSTLEKHMRKCVVNQ 270
Y S + + G+ + E P L + V+ Q
Sbjct: 185 DYMKRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGPIHLSVLRQ 235
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 29.5 bits (65), Expect = 0.14
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 118 KPFKCTVCDHACSQSAKLKKHMKIHDED 145
KPFKC++C++A + LK HM H +
Sbjct: 8 KPFKCSLCEYATRSKSNLKAHMNRHSTE 35
Score = 28.3 bits (62), Expect = 0.34
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 207 SHTGEKPYKCELCSYACAQSSKLTRHMKTH 236
S + KP+KC LC YA S L HM H
Sbjct: 3 SGSSGKPFKCSLCEYATRSKSNLKAHMNRH 32
>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif,
transcription regulation, zinc-finger; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 47
Score = 29.4 bits (66), Expect = 0.15
Identities = 10/34 (29%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 87 QEEKNKECEF--CGKKFKYENTLQAHRRNHTGEK 118
+K EC F C K FK +++H + H ++
Sbjct: 14 MPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR 47
Score = 29.1 bits (65), Expect = 0.20
Identities = 10/39 (25%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 176 SHMKKESRRNDTCEF--CGKVFKNCSNLTVHRRSHTGEK 212
++K+ + C F C K FK N+ H ++H ++
Sbjct: 9 KYVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR 47
>4dgw_A PRE-mRNA-splicing factor PRP9; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 402
Score = 32.5 bits (73), Expect = 0.18
Identities = 14/64 (21%), Positives = 28/64 (43%), Gaps = 5/64 (7%)
Query: 47 LEKELQRPKSPTNKIADLSSSTSPSKQEDFQLSYAMSTTSQEEKNKECEFCGKKFKYENT 106
+E + + + D ++ + K + F+ SY + E K C FC + FK +
Sbjct: 253 VETFFFK----SYALLDAAAVENLIKSD-FEHSYCRGSLRSEAKGIYCPFCSRWFKTSSV 307
Query: 107 LQAH 110
++H
Sbjct: 308 FESH 311
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA,
metal-binding, transcription; NMR {Mus musculus}
Length = 27
Score = 28.6 bits (63), Expect = 0.20
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 211 EKPYKCELCSYACAQSSKLTRHMKTHG 237
EKP+ C LC S +T+H++THG
Sbjct: 1 EKPFSCSLCPQRSRDFSAMTKHLRTHG 27
Score = 24.3 bits (52), Expect = 8.7
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 117 EKPFKCTVCDHACSQSAKLKKHMKIH 142
EKPF C++C + + KH++ H
Sbjct: 1 EKPFSCSLCPQRSRDFSAMTKHLRTH 26
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 32.0 bits (72), Expect = 0.23
Identities = 11/61 (18%), Positives = 16/61 (26%), Gaps = 7/61 (11%)
Query: 36 NNICFESPSGTLEKELQRPKSPTNKIADLSSSTSP-----SKQEDFQLSYAMSTTSQEEK 90
NI E P + N D + SK Q + QE+
Sbjct: 172 ENIAIELPPNEILFSENNDMDNNNDGVDELNKKCTFWDAISKLYYVQFFF--KQAEQEQA 229
Query: 91 N 91
+
Sbjct: 230 D 230
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 31.7 bits (71), Expect = 0.37
Identities = 18/96 (18%), Positives = 32/96 (33%), Gaps = 29/96 (30%)
Query: 236 HGRLG--K-----DVYRCRF----CEMPFSVPSTLEKH---MRKCVVNQNMKMESHNIMQ 281
G LG K DV C C+M F + ++ C +++
Sbjct: 156 DGVLGSGKTWVALDV--CLSYKVQCKMDFKI------FWLNLKNC-------NSPETVLE 200
Query: 282 NMKMDNHNIIQNMKLDGHMMENMKLDNHNVIHNLKM 317
++ + I N N+KL H++ L+
Sbjct: 201 MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR 236
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA,
metal-binding, transcription; NMR {Mus musculus}
Length = 28
Score = 27.8 bits (61), Expect = 0.50
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 93 ECEFCGKKFKYENTLQAHRRNHTG 116
C CGK+F ++ ++ H R HTG
Sbjct: 5 SCSVCGKRFSLKHQMETHYRVHTG 28
>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 27.9 bits (61), Expect = 0.60
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGE 211
C+ CGK+F++ S L H+ H GE
Sbjct: 15 CQECGKIFRHSSLLIEHQALHAGE 38
Score = 27.2 bits (59), Expect = 1.0
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 93 ECEFCGKKFKYENTLQAHRRNHTGE 117
EC+ CGK F++ + L H+ H GE
Sbjct: 14 ECQECGKIFRHSSLLIEHQALHAGE 38
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic}
SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Length = 30
Score = 27.1 bits (59), Expect = 0.76
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 212 KPYKCELCSYACAQSSKLTRHMKT 235
K Y+C+ C + A SS L H+KT
Sbjct: 1 KTYQCQYCEFRSADSSNLKTHIKT 24
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G
protein-coupled receptor, GPCR, SI protein-antagonist
complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A*
Length = 467
Score = 30.4 bits (68), Expect = 0.83
Identities = 19/208 (9%), Positives = 45/208 (21%)
Query: 60 KIADLSSSTSPSKQEDFQLSYAMSTTSQEEKNKECEFCGKKFKYENTLQAHRRNHTGEKP 119
+ + + + D L + ++ K N ++ G
Sbjct: 211 RASKSRINIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNT 270
Query: 120 FKCTVCDHACSQSAKLKKHMKIHDEDGDKEDREEGPSASSLAAAAAAAALNLCLPNSHMK 179
D A + K + AA +
Sbjct: 271 NGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETGVAGF 330
Query: 180 KESRRNDTCEFCGKVFKNCSNLTVHRRSHTGEKPYKCELCSYACAQSSKLTRHMKTHGRL 239
S R + + N + + ++ K + +R K +
Sbjct: 331 TNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYPPPSREKKVTRTI 390
Query: 240 GKDVYRCRFCEMPFSVPSTLEKHMRKCV 267
+ P++V + C+
Sbjct: 391 LAILLAFIITWAPYNVMVLINTFCAPCI 418
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger,
transcription; NMR {Homo sapiens}
Length = 26
Score = 26.6 bits (58), Expect = 1.1
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 212 KPYKCELCSYACAQSSKLTRHMKTH 236
KPY CE C QSS+L H++ H
Sbjct: 1 KPYVCERCGKRFVQSSQLANHIRHH 25
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA,
metal-binding, transcription; NMR {Mus musculus}
Length = 27
Score = 26.3 bits (57), Expect = 1.4
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 213 PYKCELCSYACAQSSKLTRHMKTH 236
PY+C LC C + + HM+ H
Sbjct: 3 PYRCPLCRAGCPSLASMQAHMRGH 26
Score = 24.0 bits (51), Expect = 9.8
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 119 PFKCTVCDHACSQSAKLKKHMKIH 142
P++C +C C A ++ HM+ H
Sbjct: 3 PYRCPLCRAGCPSLASMQAHMRGH 26
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 29.0 bits (64), Expect = 1.6
Identities = 11/70 (15%), Positives = 23/70 (32%), Gaps = 12/70 (17%)
Query: 87 QEEKNKECEF---CGKKFKYENTLQAHRRNHTGEKPFKCTVCDHACSQSAKLKKHMKIHD 143
+EE+ K + K + E +A + + Q K K + +I D
Sbjct: 91 REEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQ--------RQSEQVEKNKINNRIAD 142
Query: 144 EDGDKEDREE 153
+ + +
Sbjct: 143 KA-FYQQPDA 151
>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 26.7 bits (58), Expect = 1.8
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 84 TTSQEEKNKECEFCGKKFKYENTLQAHRRNHTGEK 118
++ EK+ +C CG+ F +L H+ H G+K
Sbjct: 5 SSGSREKSHQCRECGEIFFQYVSLIEHQVLHMGQK 39
Score = 25.5 bits (55), Expect = 4.6
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEK 212
C CG++F +L H+ H G+K
Sbjct: 15 CRECGEIFFQYVSLIEHQVLHMGQK 39
Score = 25.2 bits (54), Expect = 6.7
Identities = 9/30 (30%), Positives = 12/30 (40%)
Query: 207 SHTGEKPYKCELCSYACAQSSKLTRHMKTH 236
S + EK ++C C Q L H H
Sbjct: 6 SGSREKSHQCRECGEIFFQYVSLIEHQVLH 35
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC
GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1
b.80.1.10 PDB: 1ogm_X*
Length = 574
Score = 29.5 bits (65), Expect = 1.9
Identities = 11/48 (22%), Positives = 17/48 (35%), Gaps = 5/48 (10%)
Query: 271 NMKMESHNI-MQNM---KMDNHNIIQNMKLDGHMMENMKLDNHNVIHN 314
+K+ + K N II M + + +D NVIH
Sbjct: 397 AIKIYYSGASVSRATIWKCHNDPII-QMGWTSRDISGVTIDTLNVIHT 443
>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein,
helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis}
SCOP: g.37.1.4 g.37.1.4
Length = 127
Score = 28.4 bits (62), Expect = 1.9
Identities = 16/80 (20%), Positives = 20/80 (25%), Gaps = 3/80 (3%)
Query: 188 CEFCGKVFKNCSNLTVHRRSHTGEK---PYKCELCSYACAQSSKLTRHMKTHGRLGKDVY 244
C+ C V + S H +S Y + K
Sbjct: 35 CKVCSAVLISESQKLAHYQSRKHANKVRRYMAINQGEDSVPAKKFKAAPAEISDGEDRSK 94
Query: 245 RCRFCEMPFSVPSTLEKHMR 264
C C M FS P E H
Sbjct: 95 CCPVCNMTFSSPVVAESHYI 114
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 96
Score = 27.9 bits (61), Expect = 1.9
Identities = 8/62 (12%), Positives = 21/62 (33%), Gaps = 4/62 (6%)
Query: 205 RRSHTGEKPYKCELCSYACAQS-SKLTRHMKTHGRLGKDVYRCRFCEMPFSVPSTLEKHM 263
+ C C ++ L +HM+ ++++ C C + ++ H+
Sbjct: 26 YLEIVDKGSVSCPTCQAVGRKTIEGLKKHMENCK---QEMFTCHHCGKQLRSLAGMKYHV 82
Query: 264 RK 265
Sbjct: 83 MA 84
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 29.2 bits (65), Expect = 2.6
Identities = 9/72 (12%), Positives = 16/72 (22%), Gaps = 34/72 (47%)
Query: 36 NNICFESPSGTLEKELQRPKSPTNKIADLSSSTSPSKQEDFQLSYAMSTTS-------QE 88
+ F S G L + T P A++ +
Sbjct: 1715 TSYTFRSEKGLL---------------SATQFTQP----------ALTLMEKAAFEDLKS 1749
Query: 89 E--KNKECEFCG 98
+ + F G
Sbjct: 1750 KGLIPADATFAG 1761
>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 32
Score = 25.7 bits (56), Expect = 2.8
Identities = 10/30 (33%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Query: 211 EKPYKCEL--CSYACAQSSKLTRHMKTHGR 238
++PY C+ C A ++ L RH K+H
Sbjct: 1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQE 30
Score = 25.0 bits (54), Expect = 5.1
Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Query: 117 EKPFKCTV--CDHACSQSAKLKKHMKIHDEDG 146
++P+ C CD A ++ L +H K H E
Sbjct: 1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQEKA 32
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR
{Xenopus laevis} SCOP: g.37.1.1
Length = 27
Score = 25.5 bits (55), Expect = 3.2
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 214 YKCELCSYACAQSSKLTRHMKTH 236
YKC LC + + S L+RH + H
Sbjct: 2 YKCGLCERSFVEKSALSRHQRVH 24
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1
Length = 33
Score = 25.3 bits (55), Expect = 4.2
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 120 FKCTVCDHACSQSAKLKKHMKIHDEDGDK 148
F C C +S L KH+ +H+ G++
Sbjct: 3 FACPECPKRFMRSDHLSKHITLHELLGEE 31
Score = 24.9 bits (54), Expect = 6.0
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 214 YKCELCSYACAQSSKLTRHMKTHGRLGKD 242
+ C C +S L++H+ H LG++
Sbjct: 3 FACPECPKRFMRSDHLSKHITLHELLGEE 31
>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA
motif, metal binding protein; NMR {Synthetic} SCOP:
g.37.1.3 PDB: 2l1o_A
Length = 39
Score = 25.1 bits (55), Expect = 4.9
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 93 ECEFCGKKFKYENTLQAHRRNHTGEK 118
C FC ++F+ L H H ++
Sbjct: 8 TCSFCKREFRSAQALGGHMNVHRRDR 33
Score = 24.7 bits (54), Expect = 7.5
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 183 RRNDTCEFCGKVFKNCSNLTVHRRSHTGEK 212
R+ TC FC + F++ L H H ++
Sbjct: 4 PRSYTCSFCKREFRSAQALGGHMNVHRRDR 33
>2nlz_A Cephalosporin acylase; structural genomics, protein structure
initiative, PSI, nysgxrc; 2.70A {Bacillus halodurans}
SCOP: d.153.1.6
Length = 547
Score = 28.3 bits (64), Expect = 5.0
Identities = 8/16 (50%), Positives = 9/16 (56%)
Query: 161 AAAAAAAALNLCLPNS 176
AA A A AL + P S
Sbjct: 50 AAIATATALTVLEPTS 65
>1wir_A Protein arginine N-methyltransferase 3; C2H2 zinc finger domain,
PRMT3, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
SCOP: g.37.1.5
Length = 121
Score = 26.9 bits (59), Expect = 5.3
Identities = 6/27 (22%), Positives = 11/27 (40%)
Query: 116 GEKPFKCTVCDHACSQSAKLKKHMKIH 142
G + C CD + + + H K+
Sbjct: 12 GRQHTPCLFCDRLFASAEETFSHCKLE 38
>3to7_A Histone acetyltransferase ESA1; MYST family; HET: ALY COA; 1.90A
{Saccharomyces cerevisiae} PDB: 3to6_A* 1fy7_A* 1mja_A*
1mjb_A* 3to9_A* 1mj9_A*
Length = 276
Score = 27.6 bits (61), Expect = 6.2
Identities = 5/26 (19%), Positives = 11/26 (42%)
Query: 94 CEFCGKKFKYENTLQAHRRNHTGEKP 119
+F + F + + +R+ T P
Sbjct: 39 DDFTLQYFGSKKQYERYRKKCTLRHP 64
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 30
Score = 24.4 bits (53), Expect = 6.7
Identities = 11/27 (40%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 212 KPYKCELCSYACAQSSKLTRHM-KTHG 237
K Y C LC+ A + L RH K H
Sbjct: 1 KAYACGLCNRAFTRRDLLIRHAQKIHS 27
>2i3o_A Gamma-glutamyltransferase related protein; structural genomics,
PSI, protein structure initiative; 2.03A {Thermoplasma
acidophilum} SCOP: d.153.1.6
Length = 516
Score = 27.5 bits (62), Expect = 7.3
Identities = 6/16 (37%), Positives = 8/16 (50%)
Query: 161 AAAAAAAALNLCLPNS 176
AA A +A L + N
Sbjct: 39 AALAVSAMLCVTQNNL 54
>1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS
protein structure initiative, joint center for
structural G transferase; HET: PLP; 1.90A {Thermotoga
maritima} SCOP: c.67.1.1
Length = 389
Score = 27.1 bits (61), Expect = 8.8
Identities = 10/31 (32%), Positives = 17/31 (54%), Gaps = 4/31 (12%)
Query: 157 ASSLAAAAAAAALNLCLPNSHMKKE--SRRN 185
+++A AA AL + NS+M + R+N
Sbjct: 279 INTVAQYAALKALE--VDNSYMVQTFKERKN 307
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation,
transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus}
PDB: 1tbn_A 1tbo_A 2e73_A
Length = 674
Score = 27.3 bits (60), Expect = 9.8
Identities = 27/225 (12%), Positives = 56/225 (24%), Gaps = 31/225 (13%)
Query: 116 GEKPFKCTVCDHACSQSAKLKKHMKIHDEDGDKEDREEGPSASSLAAAAAAAALNLCLPN 175
G++ F+C VC H + H+ + AS +
Sbjct: 62 GKQGFQCQVCSFVV--------HKRCHEFVTFSCPGADKGPASDDPR----------SKH 103
Query: 176 SHMKKESRRNDTCEFCG-------KVFKNCSN--LTVHRRSHTGEKPYKCELCSYACAQS 226
C+ CG C + VH+R P C
Sbjct: 104 KFKIHTYSSPTFCDHCGSLLYGLIHQGMKCDTCMMNVHKRCVM-NVPSLCGTDHTERRGR 162
Query: 227 SKLTRHMKTHGRLGKDVYRCRFCEMPFSVPSTLEKHMR---KCVVNQNMKMESHNIMQNM 283
+ H+ + M + S ++ K ++ N
Sbjct: 163 IYIQAHIDREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNP 222
Query: 284 KMDNHNIIQNMKLDGHMMENMKLDNHNVIHNLKMDGHSMMAPSLV 328
+ + Q + D ++++ + ++ G S +
Sbjct: 223 EWNETFRFQLKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISEL 267
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.312 0.124 0.365
Gapped
Lambda K H
0.267 0.0515 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,707,329
Number of extensions: 255669
Number of successful extensions: 1884
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1642
Number of HSP's successfully gapped: 805
Length of query: 343
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 249
Effective length of database: 4,077,219
Effective search space: 1015227531
Effective search space used: 1015227531
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 58 (26.6 bits)