BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5204
(209 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2B5H|A Chain A, 1.5 A Resolution Crystal Structure Of Recombinant R.
Norvegicus Cysteine Dioxygenase
pdb|2GH2|A Chain A, 1.5 A Resolution R. Norvegicus Cysteine Dioxygenase
Structure Crystallized In The Presence Of Cysteine
pdb|3ELN|A Chain A, A Putative Fe2+-Bound Persulfenate Intermediate In
Cysteine Dioxygenase
Length = 200
Score = 186 bits (473), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 92/188 (48%), Positives = 128/188 (68%), Gaps = 7/188 (3%)
Query: 18 LTRIDTLSELIHRVYAAFEGRSSVDVAHVKFLMESYVSNADDWKRYAQFDENRYTRNLVD 77
L + TL++LI ++ F G V+V V+ ++E+Y SN +W YA+FD+ RYTRNLVD
Sbjct: 6 LLKPRTLADLIRILHELFAG-DEVNVEEVQAVLEAYESNPAEWALYAKFDQYRYTRNLVD 64
Query: 78 EGDGKFNLILLCWSQGQASSIHDHAQAHCFMKMLQGCLTEVRYQEPNHTSDEIGQDRPLS 137
+G+GKFNL++LCW +G SSIHDH +HCF+K+LQG L E + P+ S+E+ +
Sbjct: 65 QGNGKFNLMILCWGEGHGSSIHDHTDSHCFLKLLQGNLKETLFDWPDKKSNEM-----IK 119
Query: 138 EISRTELAENDVCYINDSMGLHKVGNSGPHPAAVSLHLYSPPFNICSSFDAQTGVKSRAR 197
+ RT L EN YINDS+GLH+V N AVSLHLYSPPF+ C +FD +TG K++
Sbjct: 120 KSERT-LRENQCAYINDSIGLHRVENVSHTEPAVSLHLYSPPFDTCHAFDQRTGHKNKVT 178
Query: 198 LTYWSKFG 205
+T+ SKFG
Sbjct: 179 MTFHSKFG 186
>pdb|2IC1|A Chain A, Crystal Structure Of Human Cysteine Dioxygenase In Complex
With Substrate Cysteine
Length = 205
Score = 186 bits (473), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 91/183 (49%), Positives = 124/183 (67%), Gaps = 7/183 (3%)
Query: 23 TLSELIHRVYAAFEGRSSVDVAHVKFLMESYVSNADDWKRYAQFDENRYTRNLVDEGDGK 82
TL++LI ++ F G V+V V+ +ME+Y S+ +W YA+FD+ RYTRNLVD+G+GK
Sbjct: 16 TLADLIRILHQLFAG-DEVNVEEVQAIMEAYESDPTEWAMYAKFDQYRYTRNLVDQGNGK 74
Query: 83 FNLILLCWSQGQASSIHDHAQAHCFMKMLQGCLTEVRYQEPNHTSDEIGQDRPLSEISRT 142
FNL++LCW +G SSIHDH +HCF+KMLQG L E + P+ S+E+ + S
Sbjct: 75 FNLMILCWGEGHGSSIHDHTNSHCFLKMLQGNLKETLFAWPDKKSNEMVKK------SER 128
Query: 143 ELAENDVCYINDSMGLHKVGNSGPHPAAVSLHLYSPPFNICSSFDAQTGVKSRARLTYWS 202
L EN YINDS+GLH+V N AVSLHLYSPPF+ C +FD +TG K++ +T+ S
Sbjct: 129 VLRENQCAYINDSIGLHRVENISHTEPAVSLHLYSPPFDTCHAFDQRTGHKNKVTMTFHS 188
Query: 203 KFG 205
KFG
Sbjct: 189 KFG 191
>pdb|2ATF|A Chain A, X-Ray Structure Of Cysteine Dioxygenase Type I From Mus
Musculus Mm.241056
pdb|2Q4S|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Cysteine Dioxygenase Type I From Mus Musculus Mm.241056
Length = 200
Score = 182 bits (463), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 92/188 (48%), Positives = 125/188 (66%), Gaps = 7/188 (3%)
Query: 18 LTRIDTLSELIHRVYAAFEGRSSVDVAHVKFLMESYVSNADDWKRYAQFDENRYTRNLVD 77
L + TL++LI ++ F G V+V V+ ++E+Y SN +W YA+FD+ RYTRNLVD
Sbjct: 6 LLKPRTLADLIRILHELFAG-DEVNVEEVQAVLEAYESNPAEWALYAKFDQYRYTRNLVD 64
Query: 78 EGDGKFNLILLCWSQGQASSIHDHAQAHCFMKMLQGCLTEVRYQEPNHTSDEIGQDRPLS 137
+G+GKFNL +LCW +G SSIHDH +HCF+K+LQG L E + P+ S+E +
Sbjct: 65 QGNGKFNLXILCWGEGHGSSIHDHTDSHCFLKLLQGNLKETLFDWPDKKSNEX-----IK 119
Query: 138 EISRTELAENDVCYINDSMGLHKVGNSGPHPAAVSLHLYSPPFNICSSFDAQTGVKSRAR 197
+ RT L EN YINDS+GLH+V N AVSLHLYSPPF+ C +FD +TG K++
Sbjct: 120 KSERT-LRENQCAYINDSIGLHRVENVSHTEPAVSLHLYSPPFDTCHAFDQRTGHKNKVT 178
Query: 198 LTYWSKFG 205
T+ SKFG
Sbjct: 179 XTFHSKFG 186
>pdb|3EQE|A Chain A, Crystal Structure Of The Yubc Protein From Bacillus
Subtilis. Northeast Structural Genomics Consortium
Target Sr112.
pdb|3EQE|B Chain B, Crystal Structure Of The Yubc Protein From Bacillus
Subtilis. Northeast Structural Genomics Consortium
Target Sr112
Length = 171
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/176 (22%), Positives = 71/176 (40%), Gaps = 28/176 (15%)
Query: 24 LSELIHRVYAAFEGRSSVDVA-------HVKFLMESYVSNADDWKRYAQFDENRYTRNLV 76
L E I ++ + S D+A + L + Y+ D + Y RN +
Sbjct: 13 LYECIQDIFGGLKNPSVKDLATSLKQIPNAAKLSQPYIKEPDQYA---------YGRNAI 63
Query: 77 DEGDGKFNLILLCWSQGQASSIHDHAQAHCFMKMLQGCLTEVRYQEPNHTSDEIGQDRPL 136
+ + +I++ + +++HDH Q+ +L+G L Y+ G+
Sbjct: 64 YRNN-ELEIIVINIPPNKETTVHDHGQSIGCAXVLEGKLLNSIYRS-------TGEH--- 112
Query: 137 SEISRTELAENDVCYINDSMGLHKVGNSGPHPAAVSLHLYSPPFNICSSFDAQTGV 192
+E+S + C I+ +HK N VSLH+YSPP + F+ Q V
Sbjct: 113 AELSNSYFVHEGECLISTKGLIHKXSNPTSE-RXVSLHVYSPPLEDXTVFEEQKEV 167
>pdb|2GM6|A Chain A, Crystal Structure Of A Putative Cysteine Dioxygenase Type
I (reut_b5045) From Ralstonia Eutropha Jmp134 At 1.84 A
Resolution
Length = 208
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 57/125 (45%), Gaps = 14/125 (11%)
Query: 58 DDW--KRYAQFDENRYTRNLV--DEGDGKFNLILLCWSQGQASSIHDHAQAHCFMKMLQG 113
DDW +AQ Y + L+ D + +F+++ W GQ + IHDH + L G
Sbjct: 51 DDWLPDAFAQPHPEYYQQXLLHCDSAE-RFSIVSFVWGPGQRTPIHDHT-----VWGLIG 104
Query: 114 CLTEVRYQEPNHTSDEIGQDRPLSEISRTELAENDVCYINDSMG-LHKVGNSGPHPAAVS 172
L Y +P G RP+ T L V ++ ++G +H+V N+ ++S
Sbjct: 105 XLRGAEYSQPFVLD---GSGRPVLHGEPTRLEPGHVEAVSPTVGDIHRVHNAYDDRVSIS 161
Query: 173 LHLYS 177
+H+Y
Sbjct: 162 IHVYG 166
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,260,906
Number of Sequences: 62578
Number of extensions: 248773
Number of successful extensions: 514
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 506
Number of HSP's gapped (non-prelim): 6
length of query: 209
length of database: 14,973,337
effective HSP length: 94
effective length of query: 115
effective length of database: 9,091,005
effective search space: 1045465575
effective search space used: 1045465575
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)