RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5204
(209 letters)
>3eln_A Cysteine dioxygenase type 1; peroxysulfenate, non-heme
dioxygenases, Fe2+ metalloenzyme, taurine, thioether,
iron, metal- binding; 1.42A {Rattus norvegicus} SCOP:
b.82.1.19 PDB: 2gh2_A 2b5h_A 2atf_A* 2q4s_A 2ic1_A
Length = 200
Score = 189 bits (480), Expect = 2e-61
Identities = 90/191 (47%), Positives = 125/191 (65%), Gaps = 7/191 (3%)
Query: 18 LTRIDTLSELIHRVYAAFEGRSSVDVAHVKFLMESYVSNADDWKRYAQFDENRYTRNLVD 77
L + TL++LI ++ F G V+V V+ ++E+Y SN +W YA+FD+ RYTRNLVD
Sbjct: 6 LLKPRTLADLIRILHELFAGDE-VNVEEVQAVLEAYESNPAEWALYAKFDQYRYTRNLVD 64
Query: 78 EGDGKFNLILLCWSQGQASSIHDHAQAHCFMKMLQGCLTEVRYQEPNHTSDEIGQDRPLS 137
+G+GKFNL++LCW +G SSIHDH +HCF+K+LQG L E + P+ S +
Sbjct: 65 QGNGKFNLMILCWGEGHGSSIHDHTDSHCFLKLLQGNLKETLFDWPDKKS------NEMI 118
Query: 138 EISRTELAENDVCYINDSMGLHKVGNSGPHPAAVSLHLYSPPFNICSSFDAQTGVKSRAR 197
+ S L EN YINDS+GLH+V N AVSLHLYSPPF+ C +FD +TG K++
Sbjct: 119 KKSERTLRENQCAYINDSIGLHRVENVSHTEPAVSLHLYSPPFDTCHAFDQRTGHKNKVT 178
Query: 198 LTYWSKFGHKV 208
+T+ SKFG +
Sbjct: 179 MTFHSKFGIRT 189
>3eqe_A Putative cystein deoxygenase; YUBC, SR112, NESG, structural
genomics, PSI-2, protein structure initiative; 2.82A
{Bacillus subtilis}
Length = 171
Score = 144 bits (365), Expect = 2e-44
Identities = 38/179 (21%), Positives = 72/179 (40%), Gaps = 13/179 (7%)
Query: 19 TRIDTLSELIHRVYAAFEGRSSVDVAHVKFLMESYVSNADDWKRY-AQFDENRYTRNLVD 77
+ EL + F G + V + ++ + A + Y + D+ Y RN +
Sbjct: 5 HHHHSHMELYECIQDIFGGLKNPSVKDLATSLKQIPNAAKLSQPYIKEPDQYAYGRNAIY 64
Query: 78 EGDGKFNLILLCWSQGQASSIHDHAQAHCFMKMLQGCLTEVRYQEPNHTSDEIGQDRPLS 137
+ + +I++ + +++HDH Q+ +L+G L Y+ +
Sbjct: 65 R-NNELEIIVINIPPNKETTVHDHGQSIGCAMVLEGKLLNSIYRSTGE----------HA 113
Query: 138 EISRTELAENDVCYINDSMGLHKVGNSGPHPAAVSLHLYSPPFNICSSFDAQTGVKSRA 196
E+S + C I+ +HK+ N VSLH+YSPP + F+ Q V +
Sbjct: 114 ELSNSYFVHEGECLISTKGLIHKMSNPTSER-MVSLHVYSPPLEDMTVFEEQKEVLENS 171
>2gm6_A Cysteine dioxygenase type I; structural genomics, J center for
structural genomics, JCSG, protein structure INI PSI-2,
oxidoreductase; 1.84A {Ralstonia eutropha} SCOP:
b.82.1.19
Length = 208
Score = 130 bits (329), Expect = 2e-38
Identities = 39/186 (20%), Positives = 72/186 (38%), Gaps = 17/186 (9%)
Query: 17 RLTRIDTLSELIHRVYAAFEGRS--SVDVAHVKFLMESYVSNADDW--KRYAQFDENRYT 72
+ L E I + A + + + + L+ V+ DDW +AQ Y
Sbjct: 9 GRASLAPLREFITGLSALLDEQPGEARILREGGALLARLVAR-DDWLPDAFAQPHPEYYQ 67
Query: 73 RNLV-DEGDGKFNLILLCWSQGQASSIHDHAQAHCFMKMLQGCLTEVRYQEPNHTSDEIG 131
+ L+ + +F+++ W GQ + IHDH + ML+G + G
Sbjct: 68 QMLLHCDSAERFSIVSFVWGPGQRTPIHDHTVW-GLIGMLRGAEYSQPFVLD-------G 119
Query: 132 QDRPLSEISRTELAENDVCYINDSMG-LHKVGNSGPHPAAVSLHLYSPPFNI--CSSFDA 188
RP+ T L V ++ ++G +H+V N+ ++S+H+Y S +
Sbjct: 120 SGRPVLHGEPTRLEPGHVEAVSPTVGDIHRVHNAYDDRVSISIHVYGANIGGVRRSVYTE 179
Query: 189 QTGVKS 194
K
Sbjct: 180 AGERKP 185
>3uss_A Putative uncharacterized protein; cupin, three histidine, non-heme
iron, cysteine catabolism, oxidoreductase; 2.70A
{Pseudomonas aeruginosa}
Length = 211
Score = 126 bits (318), Expect = 9e-37
Identities = 42/185 (22%), Positives = 77/185 (41%), Gaps = 17/185 (9%)
Query: 18 LTRIDTLSELIHRVYAAFEGRSS--VDVAHVKFLMESYVSNADDW--KRYAQFDENRYTR 73
+ R+D L + I + + R +A L+ V DDW + A+ D RY +
Sbjct: 4 ILRLDRLRQFIGELATLLDSRPDESTLLAQAHPLLAELVHQ-DDWLPEDCARPDPQRYQQ 62
Query: 74 NLV-DEGDGKFNLILLCWSQGQASSIHDHAQAHCFMKMLQGCLTEVRYQEPNHTSDEIGQ 132
L+ + +F+++ W GQ + +HDH + + ML+G Y
Sbjct: 63 YLLHVDSRQRFSVVSFVWGPGQITPVHDH-RVWGLIGMLRGAEYSQPYAFDA-------G 114
Query: 133 DRPLSEISRTELAENDVCYINDSMG-LHKVGNSGPHPAAVSLHLYSPPFNIC--SSFDAQ 189
RP +R L +V ++ +G +H+V N+ ++S+H+Y + F A+
Sbjct: 115 GRPHPSGARRRLEPGEVEALSPRIGDVHQVSNAFSDRTSISIHVYGANIGAVRRAVFSAE 174
Query: 190 TGVKS 194
K
Sbjct: 175 GEEKP 179
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 34.6 bits (79), Expect = 0.024
Identities = 40/225 (17%), Positives = 67/225 (29%), Gaps = 71/225 (31%)
Query: 4 LLTKINRVEHYLLRLTRIDTLSELIHRVYAAFEGRSSVDVAHVKFLMESYVSNADDWKRY 63
L + E+ L D IH + A + + K L+++Y++
Sbjct: 84 LNLCLTEFENCYLEGN--D-----IHALAAKLLQENDTTLVKTKELIKNYIT-------- 128
Query: 64 AQFDENR-YTRN----LVDE-GDGKFNLILLCWSQGQASSIHDHAQAHCFMKMLQGCLTE 117
A+ R + + L G+G L+ + QG E
Sbjct: 129 ARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNT----------------DDYFEE 172
Query: 118 VR--YQEPNHTSDEIGQ--DRPLSEISRTELAENDVCYINDSMGLHKVG---NSGPHP-- 168
+R YQ + ++ + LSE+ RT L V + GL+ + N P
Sbjct: 173 LRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVF----TQGLNILEWLENPSNTPDK 228
Query: 169 -----AAVSLHL--------YS--------PPFNICSSFDAQTGV 192
+S L Y P + S TG
Sbjct: 229 DYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGH 273
Score = 29.6 bits (66), Expect = 0.85
Identities = 23/116 (19%), Positives = 40/116 (34%), Gaps = 26/116 (22%)
Query: 36 EGRSSVDVAHVKFLMESYVSNADDWKRYAQFDENRYTRNLVDEGDGKFNLILLCWSQGQA 95
E + ++ KFL YVS+ + + QFD+ + E F L +
Sbjct: 53 EPTTPAELV-GKFL--GYVSSLVEPSKVGQFDQ--VLNLCLTE----FENCYL-----EG 98
Query: 96 SSIHDHAQAHCFMKMLQGCLTEVR-----YQEPNHTSDEIGQDRPLSEISRTELAE 146
+ I HA A ++ L + + Y + RP + S + L
Sbjct: 99 NDI--HALAAKLLQENDTTLVKTKELIKNYITARIMA-----KRPFDKKSNSALFR 147
Score = 27.7 bits (61), Expect = 3.2
Identities = 14/82 (17%), Positives = 25/82 (30%), Gaps = 19/82 (23%)
Query: 96 SSIHDHAQAH--CFMKMLQGCLTEVRYQEPNHTSDEIGQDRPLSEISRTELAENDVCYIN 153
++ A F K+L P T D P + EL + Y++
Sbjct: 24 TASFFIASQLQEQFNKIL-----------PEPTEGFAADDEPTTPA---ELVGKFLGYVS 69
Query: 154 DSMGLHKVGNSGPHPAAVSLHL 175
+ + G ++L L
Sbjct: 70 SLV---EPSKVGQFDQVLNLCL 88
>1v70_A Probable antibiotics synthesis protein; structural genomics,
thermus thermophilus HB8, riken structu
genomics/proteomics initiative, RSGI; 1.30A {Thermus
thermophilus} SCOP: b.82.1.9 PDB: 2dct_A
Length = 105
Score = 32.5 bits (74), Expect = 0.027
Identities = 23/121 (19%), Positives = 39/121 (32%), Gaps = 21/121 (17%)
Query: 59 DWKRYAQFDENRYTRNLVDEGDGKFNLILLCWSQGQASSIHDHAQAHCFMKMLQGCLTEV 118
D KR A+++ + + V + + + L GQA +H H + L+G +
Sbjct: 5 DLKRLARYNPEKMAKIPVFQSE-RMLYDLYALLPGQAQKVHVHEGSDKVYYALEGEVV-- 61
Query: 119 RYQEPNHTSDEIGQDRPLSEISRTELAENDVCYINDSMGLHKVGNSGPHPAAVSLHLYSP 178
E LA + H V N PA + L + +P
Sbjct: 62 ------VRVGE----------EEALLAPGMAAFAPAGAP-HGVRNESASPALL-LVVTAP 103
Query: 179 P 179
Sbjct: 104 R 104
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop,
rossman fold, AAA+, photosynthesis, metal transport;
2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB:
2x31_G
Length = 350
Score = 30.5 bits (69), Expect = 0.31
Identities = 14/38 (36%), Positives = 17/38 (44%), Gaps = 10/38 (26%)
Query: 10 RVEHYLLRLTRIDTLSELIHRVYAAFEGRSSVDVAHVK 47
R E LLR R L AA EG ++V H+K
Sbjct: 289 RGELTLLRSAR--AL--------AALEGATAVGRDHLK 316
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.4 bits (62), Expect = 1.1
Identities = 5/11 (45%), Positives = 6/11 (54%), Gaps = 3/11 (27%)
Query: 172 SLHLYSP---P 179
SL LY+ P
Sbjct: 28 SLKLYADDSAP 38
>2q30_A Uncharacterized protein; double-stranded beta-helix fold,
structural genomics, joint for structural genomics,
JCSG; HET: MSE; 1.94A {Desulfovibrio desulfuricans
subsp}
Length = 110
Score = 27.8 bits (62), Expect = 1.3
Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 6/58 (10%)
Query: 50 MESY--VSNADDWKRYAQFDENRYTRNLVDEGDGKFNLILLCWSQGQASSIHDHAQAH 105
ME++ N + +FD+ R+ LV E + F ++ + GQ +H H
Sbjct: 2 MEAHMKSHNLLEA---VRFDDQRFVMELVHESE-NFKIVSFTFKAGQELPVHSHNIEG 55
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.134 0.408
Gapped
Lambda K H
0.267 0.0528 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,099,902
Number of extensions: 168660
Number of successful extensions: 294
Number of sequences better than 10.0: 1
Number of HSP's gapped: 283
Number of HSP's successfully gapped: 14
Length of query: 209
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 120
Effective length of database: 4,216,824
Effective search space: 506018880
Effective search space used: 506018880
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.4 bits)