RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5204
         (209 letters)



>d3elna1 b.82.1.19 (A:5-190) Cysteine dioxygenase type I {Rattus
           norvegicus [TaxId: 10116]}
          Length = 186

 Score =  182 bits (462), Expect = 4e-59
 Identities = 86/187 (45%), Positives = 121/187 (64%), Gaps = 10/187 (5%)

Query: 21  IDTLSELIHRVYAAFEGRSSVDVAHVKFLMESYVSNADDWKRYAQFDENRYTRNLVDEGD 80
           +  L  ++H ++A       V+V  V+ ++E+Y SN  +W  YA+FD+ RYTRNLVD+G+
Sbjct: 8   LADLIRILHELFAG----DEVNVEEVQAVLEAYESNPAEWALYAKFDQYRYTRNLVDQGN 63

Query: 81  GKFNLILLCWSQGQASSIHDHAQAHCFMKMLQGCLTEVRYQEPNHTSDEIGQDRPLSEIS 140
           GKFNL++LCW +G  SSIHDH  +HCF+K+LQG L E  +  P+  S        + + S
Sbjct: 64  GKFNLMILCWGEGHGSSIHDHTDSHCFLKLLQGNLKETLFDWPDKKS------NEMIKKS 117

Query: 141 RTELAENDVCYINDSMGLHKVGNSGPHPAAVSLHLYSPPFNICSSFDAQTGVKSRARLTY 200
              L EN   YINDS+GLH+V N      AVSLHLYSPPF+ C +FD +TG K++  +T+
Sbjct: 118 ERTLRENQCAYINDSIGLHRVENVSHTEPAVSLHLYSPPFDTCHAFDQRTGHKNKVTMTF 177

Query: 201 WSKFGHK 207
            SKFG +
Sbjct: 178 HSKFGIR 184


>d2gm6a1 b.82.1.19 (A:11-202) Cysteine dioxygenase type I {Ralstonia
           eutropha [TaxId: 106590]}
          Length = 192

 Score =  125 bits (314), Expect = 7e-37
 Identities = 38/182 (20%), Positives = 69/182 (37%), Gaps = 17/182 (9%)

Query: 21  IDTLSELIHRVYAAFEGRSS--VDVAHVKFLMESYVSNADDW--KRYAQFDENRYTRNLV 76
           +  L E I  + A  + +      +     L+   V+  DDW    +AQ     Y + L+
Sbjct: 2   LAPLREFITGLSALLDEQPGEARILREGGALLARLVAR-DDWLPDAFAQPHPEYYQQMLL 60

Query: 77  -DEGDGKFNLILLCWSQGQASSIHDHAQAHCFMKMLQGCLTEVRYQEPNHTSDEIGQDRP 135
             +   +F+++   W  GQ + IHDH        ML+G      +             RP
Sbjct: 61  HCDSAERFSIVSFVWGPGQRTPIHDHTVWGLIG-MLRGAEYSQPFVLDG-------SGRP 112

Query: 136 LSEISRTELAENDVCYINDSMG-LHKVGNSGPHPAAVSLHLYSPPFNI--CSSFDAQTGV 192
           +     T L    V  ++ ++G +H+V N+     ++S+H+Y         S +      
Sbjct: 113 VLHGEPTRLEPGHVEAVSPTVGDIHRVHNAYDDRVSISIHVYGANIGGVRRSVYTEAGER 172

Query: 193 KS 194
           K 
Sbjct: 173 KP 174


>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI
           {Rhodobacter capsulatus [TaxId: 1061]}
          Length = 333

 Score = 26.4 bits (57), Expect = 2.7
 Identities = 13/38 (34%), Positives = 16/38 (42%), Gaps = 10/38 (26%)

Query: 10  RVEHYLLRLTRIDTLSELIHRVYAAFEGRSSVDVAHVK 47
           R E  LLR  R            AA EG ++V   H+K
Sbjct: 272 RGELTLLRSAR----------ALAALEGATAVGRDHLK 299


>d1lr5a_ b.82.1.2 (A:) Auxin binding protein {Maize (Zea mays)
           [TaxId: 4577]}
          Length = 160

 Score = 25.6 bits (55), Expect = 3.5
 Identities = 15/85 (17%), Positives = 25/85 (29%), Gaps = 10/85 (11%)

Query: 95  ASSIHDHAQAHCFMKMLQGCLTEVRYQEPNHTSDEIGQDRPLSEISRTELAENDVCYIND 154
             +            +L+G  T +     +       Q+ P  +        N    I  
Sbjct: 52  QRTPIHRHSCEEVFTVLKGKGT-LLMGSSSLKYPGQPQEIPFFQ--------NTTFSIPV 102

Query: 155 SMGLHKVGNSGPHPAAVSLHLYSPP 179
           +   H+V NS  H     L + S P
Sbjct: 103 NDP-HQVWNSDEHEDLQVLVIISRP 126


>d1mwqa_ d.58.4.7 (A:) Hypothetical protein HI0828 {Haemophilus
           influenzae [TaxId: 727]}
          Length = 100

 Score = 24.5 bits (53), Expect = 4.9
 Identities = 10/52 (19%), Positives = 20/52 (38%)

Query: 130 IGQDRPLSEISRTELAENDVCYINDSMGLHKVGNSGPHPAAVSLHLYSPPFN 181
             QD P +   R  + E  +  +      +++  +GP+PA    +     F 
Sbjct: 8   FAQDIPNTLEKRLAVREQHLARLKQLQAENRLLTAGPNPAIDDENPSEAGFT 59


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.134    0.408 

Gapped
Lambda     K      H
   0.267   0.0550    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 753,289
Number of extensions: 31443
Number of successful extensions: 53
Number of sequences better than 10.0: 1
Number of HSP's gapped: 49
Number of HSP's successfully gapped: 6
Length of query: 209
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 128
Effective length of database: 1,295,466
Effective search space: 165819648
Effective search space used: 165819648
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.8 bits)