BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5205
(113 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CE7|A Chain A, Edta Treated
pdb|2CE7|B Chain B, Edta Treated
pdb|2CE7|C Chain C, Edta Treated
pdb|2CE7|D Chain D, Edta Treated
pdb|2CE7|E Chain E, Edta Treated
pdb|2CE7|F Chain F, Edta Treated
pdb|2CEA|A Chain A, Cell Division Protein Ftsh
pdb|2CEA|B Chain B, Cell Division Protein Ftsh
pdb|2CEA|C Chain C, Cell Division Protein Ftsh
pdb|2CEA|D Chain D, Cell Division Protein Ftsh
pdb|2CEA|E Chain E, Cell Division Protein Ftsh
pdb|2CEA|F Chain F, Cell Division Protein Ftsh
Length = 476
Score = 90.5 bits (223), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/146 (38%), Positives = 70/146 (47%), Gaps = 40/146 (27%)
Query: 8 ITFKDVRGVDEAKQELKEIVEFLKNPEKFS------------------------------ 37
+TFKDV G +EA +ELKE+VEFLK+P KF+
Sbjct: 13 VTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGE 72
Query: 38 --------TXXXXXXXXXXXXARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSV--LH 87
+ A RVRDLF AK PC+VFIDEID+VG R + H
Sbjct: 73 ANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGH 132
Query: 88 PYANQTINQLLAEMDGFHQNEGVVVL 113
QT+NQLL EMDGF EG++V+
Sbjct: 133 DEREQTLNQLLVEMDGFDSKEGIIVM 158
>pdb|3KDS|E Chain E, Apo-ftsh Crystal Structure
pdb|3KDS|F Chain F, Apo-ftsh Crystal Structure
pdb|3KDS|G Chain G, Apo-ftsh Crystal Structure
Length = 465
Score = 90.5 bits (223), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/146 (38%), Positives = 70/146 (47%), Gaps = 40/146 (27%)
Query: 8 ITFKDVRGVDEAKQELKEIVEFLKNPEKFS------------------------------ 37
+TFKDV G +EA +ELKE+VEFLK+P KF+
Sbjct: 13 VTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGATLLARAVAGE 72
Query: 38 --------TXXXXXXXXXXXXARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSV--LH 87
+ A RVRDLF AK PC+VFIDEID+VG R + H
Sbjct: 73 ANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGH 132
Query: 88 PYANQTINQLLAEMDGFHQNEGVVVL 113
QT+NQLL EMDGF EG++V+
Sbjct: 133 DEREQTLNQLLVEMDGFDSKEGIIVM 158
>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh
Length = 257
Score = 89.0 bits (219), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 72/150 (48%), Gaps = 40/150 (26%)
Query: 4 EEINITFKDVRGVDEAKQELKEIVEFLKNPEKFS-------------------------- 37
++I TF DV G DEAK+E+ E+VE+L+ P +F
Sbjct: 5 DQIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKA 64
Query: 38 ------------TXXXXXXXXXXXXARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSV 85
+ A RVRD+F+ AK PC++FIDEID+VG +R +
Sbjct: 65 IAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGL 124
Query: 86 --LHPYANQTINQLLAEMDGFHQNEGVVVL 113
H QT+NQ+L EMDGF NEG++V+
Sbjct: 125 GGGHDEREQTLNQMLVEMDGFEGNEGIIVI 154
>pdb|2QZ4|A Chain A, Human Paraplegin, Aaa Domain In Complex With Adp
Length = 262
Score = 83.6 bits (205), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 73/150 (48%), Gaps = 43/150 (28%)
Query: 6 INITFKDVRGVDEAKQELKEIVEFLKNPEKF----------------------------- 36
+ ++FKDV G+ EAK E++E V++LK+PE+F
Sbjct: 1 MGVSFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVA 60
Query: 37 ---------STXXXXXXXXXXXXARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLH 87
A RVR LFK A+ R PC+V+IDEID+VG KR+ + +
Sbjct: 61 TEAQVPFLAMAGAEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTT-MS 119
Query: 88 PYAN----QTINQLLAEMDGFHQNEGVVVL 113
++N QT+NQLL EMDG + V+VL
Sbjct: 120 GFSNTEEEQTLNQLLVEMDGMGTTDHVIVL 149
>pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
Length = 278
Score = 78.2 bits (191), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/150 (39%), Positives = 75/150 (50%), Gaps = 40/150 (26%)
Query: 4 EEINITFKDVRGVDEAKQELKEIVEFLKNPEKF--------------------------- 36
E +TFKDV G +EAK+ELKEIVEFLKNP +F
Sbjct: 33 EAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARA 92
Query: 37 -----------STXXXXXXXXXXXXARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSV 85
++ A RVRDLF+ AK PC+VFIDEID+VG KR + V
Sbjct: 93 VAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGV 152
Query: 86 --LHPYANQTINQLLAEMDGFHQNEGVVVL 113
+ QT+NQLL EMDGF ++ +VV+
Sbjct: 153 GGGNDEREQTLNQLLVEMDGFEKDTAIVVM 182
>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 499
Score = 78.2 bits (191), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/150 (39%), Positives = 75/150 (50%), Gaps = 40/150 (26%)
Query: 4 EEINITFKDVRGVDEAKQELKEIVEFLKNPEKF--------------------------- 36
E +TFKDV G +EAK+ELKEIVEFLKNP +F
Sbjct: 24 EAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARA 83
Query: 37 -----------STXXXXXXXXXXXXARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSV 85
++ A RVRDLF+ AK PC+VFIDEID+VG KR + V
Sbjct: 84 VAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGV 143
Query: 86 --LHPYANQTINQLLAEMDGFHQNEGVVVL 113
+ QT+NQLL EMDGF ++ +VV+
Sbjct: 144 GGGNDEREQTLNQLLVEMDGFEKDTAIVVM 173
>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 508
Score = 78.2 bits (191), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/150 (39%), Positives = 75/150 (50%), Gaps = 40/150 (26%)
Query: 4 EEINITFKDVRGVDEAKQELKEIVEFLKNPEKF--------------------------- 36
E +TFKDV G +EAK+ELKEIVEFLKNP +F
Sbjct: 33 EAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARA 92
Query: 37 -----------STXXXXXXXXXXXXARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSV 85
++ A RVRDLF+ AK PC+VFIDEID+VG KR + V
Sbjct: 93 VAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGV 152
Query: 86 --LHPYANQTINQLLAEMDGFHQNEGVVVL 113
+ QT+NQLL EMDGF ++ +VV+
Sbjct: 153 GGGNDEREQTLNQLLVEMDGFEKDTAIVVM 182
>pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
pdb|1IY0|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Amp-Pnp
From Thermus Thermophilus
pdb|1IY1|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Adp From
Thermus Thermophilus
Length = 254
Score = 78.2 bits (191), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/150 (39%), Positives = 75/150 (50%), Gaps = 40/150 (26%)
Query: 4 EEINITFKDVRGVDEAKQELKEIVEFLKNPEKF--------------------------- 36
E +TFKDV G +EAK+ELKEIVEFLKNP +F
Sbjct: 9 EAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARA 68
Query: 37 -----------STXXXXXXXXXXXXARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSV 85
++ A RVRDLF+ AK PC+VFIDEID+VG KR + V
Sbjct: 69 VAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGV 128
Query: 86 --LHPYANQTINQLLAEMDGFHQNEGVVVL 113
+ QT+NQLL EMDGF ++ +VV+
Sbjct: 129 GGGNDEREQTLNQLLVEMDGFEKDTAIVVM 158
>pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R62|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R65|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|C Chain C, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|D Chain D, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|E Chain E, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
Length = 268
Score = 78.2 bits (191), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/155 (33%), Positives = 75/155 (48%), Gaps = 42/155 (27%)
Query: 1 VDPEEINITFKDVRGVDEAKQELKEIVEFLKNPEKFSTXXXXXXXXX------------- 47
++ E+ N+ FKD+ G +EAK+E+ EIV+FLK PE+++
Sbjct: 1 INAEKPNVRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLL 60
Query: 48 -------------------------XXXARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRT 82
A RVRDLF+ AK + P ++FIDEID++G R
Sbjct: 61 AKAVAGEAHVPFFSMGGSSFIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRA 120
Query: 83 NSVL---HPYANQTINQLLAEMDGF-HQNEGVVVL 113
+ + QT+NQLLAEMDGF +N V+VL
Sbjct: 121 AGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVL 155
>pdb|3H4M|A Chain A, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|B Chain B, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|C Chain C, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
Length = 285
Score = 62.0 bits (149), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 66/142 (46%), Gaps = 41/142 (28%)
Query: 4 EEINITFKDVRGVDEAKQELKEIVEF-LKNPEKFS------------------------- 37
E N+ ++D+ G+++ QE++E+VE LK+PE F
Sbjct: 10 ERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAK 69
Query: 38 -------------TXXXXXXXXXXXXARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNS 84
A V+D+FK AK++ P ++FIDEID++ AKRT++
Sbjct: 70 AVATETNATFIRVVGSELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDA 129
Query: 85 VLHP--YANQTINQLLAEMDGF 104
+ +T+ QLLAEMDGF
Sbjct: 130 LTGGDREVQRTLMQLLAEMDGF 151
>pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 55.5 bits (132), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 61/142 (42%), Gaps = 41/142 (28%)
Query: 4 EEINITFKDVRGVDEAKQELKEIVEF-LKNPEKF-------------------------- 36
E+ ITF + G+ E +EL+E++E LKNPE F
Sbjct: 174 EQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAK 233
Query: 37 ------------STXXXXXXXXXXXXARRVRDLFKAAKDRTPCVVFIDEIDSVGAKR--T 82
S AR +R++F AK+ PC++F+DE+D++G +R
Sbjct: 234 AVAATIGANFIFSPASGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSE 293
Query: 83 NSVLHPYANQTINQLLAEMDGF 104
+ +T+ +LL +MDGF
Sbjct: 294 GTSADREIQRTLMELLTQMDGF 315
>pdb|4B4T|M Chain M, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 434
Score = 51.2 bits (121), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 42/65 (64%), Gaps = 2/65 (3%)
Query: 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHP--YANQTINQLLAEMDGFHQNE 108
A+ VRD F AK++ P ++FIDE+D++G KR +S +T+ +LL ++DGF ++
Sbjct: 260 AKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDD 319
Query: 109 GVVVL 113
V VL
Sbjct: 320 RVKVL 324
>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 428
Score = 51.2 bits (121), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 62/151 (41%), Gaps = 41/151 (27%)
Query: 4 EEINITFKDVRGVDEAKQELKEIVEF--------------------LKNPEKFSTXXXXX 43
E+ ++T+ DV G+D KQE++E VE L P
Sbjct: 165 EKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVK 224
Query: 44 XXXXXXXA-------------------RRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNS 84
A R VRD+F+ A++ P ++FIDE+DS+ KR ++
Sbjct: 225 AVANSTKAAFIRVNGSEFVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDA 284
Query: 85 VLHP--YANQTINQLLAEMDGFHQNEGVVVL 113
+ + +LL +MDGF Q+ V V+
Sbjct: 285 QTGSDREVQRILIELLTQMDGFDQSTNVKVI 315
>pdb|2X8A|A Chain A, Human Nuclear Valosin Containing Protein Like (Nvl), C-
Terminal Aaa-Atpase Domain
Length = 274
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 39/62 (62%), Gaps = 1/62 (1%)
Query: 52 RRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQNEGVV 111
R VR +F+ AK+ PCV+F DE+D++ +R++ + + +NQLL EMDG + V
Sbjct: 90 RAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETG-ASVRVVNQLLTEMDGLEARQQVF 148
Query: 112 VL 113
++
Sbjct: 149 IM 150
>pdb|3CF0|A Chain A, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|B Chain B, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|C Chain C, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|D Chain D, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|E Chain E, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|F Chain F, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|G Chain G, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|H Chain H, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|I Chain I, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|J Chain J, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|K Chain K, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|L Chain L, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|M Chain M, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|N Chain N, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
Length = 301
Score = 48.9 bits (115), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Query: 54 VRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPY--ANQTINQLLAEMDGFHQNEGVV 111
VR++F A+ PCV+F DE+DS+ R ++ A++ INQ+L EMDG + V
Sbjct: 97 VREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVF 156
Query: 112 VL 113
++
Sbjct: 157 II 158
Score = 30.4 bits (67), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 27/31 (87%), Gaps = 1/31 (3%)
Query: 7 NITFKDVRGVDEAKQELKEIVEF-LKNPEKF 36
+T++D+ G+++ K+EL+E+V++ +++P+KF
Sbjct: 11 QVTWEDIGGLEDVKRELQELVQYPVEHPDKF 41
>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A
Length = 816
Score = 48.5 bits (114), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Query: 54 VRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPY--ANQTINQLLAEMDGFHQNEGVV 111
VR++F A+ PCV+F DE+DS+ R ++ A++ INQ+L EMDG + V
Sbjct: 559 VREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVF 618
Query: 112 VL 113
++
Sbjct: 619 II 620
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
Query: 54 VRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTI-NQLLAEMDGFHQNEGVVV 112
+R F+ A+ P ++FIDE+D++ KR + H + I +QLL MDG Q V+V
Sbjct: 286 LRKAFEEAEKNAPAIIFIDELDAIAPKREKT--HGEVERRIVSQLLTLMDGLKQRAHVIV 343
Query: 113 L 113
+
Sbjct: 344 M 344
Score = 30.4 bits (67), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 27/30 (90%), Gaps = 1/30 (3%)
Query: 8 ITFKDVRGVDEAKQELKEIVEF-LKNPEKF 36
+T++D+ G+++ K+EL+E+V++ +++P+KF
Sbjct: 474 VTWEDIGGLEDVKRELQELVQYPVEHPDKF 503
>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF2|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|D Chain D, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF3|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADP
Length = 806
Score = 48.5 bits (114), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Query: 54 VRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPY--ANQTINQLLAEMDGFHQNEGVV 111
VR++F A+ PCV+F DE+DS+ R ++ A++ INQ+L EMDG + V
Sbjct: 559 VREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVF 618
Query: 112 VL 113
++
Sbjct: 619 II 620
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
Query: 54 VRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTI-NQLLAEMDGFHQNEGVVV 112
+R F+ A+ P ++FIDE+D++ KR + H + I +QLL MDG Q V+V
Sbjct: 286 LRKAFEEAEKNAPAIIFIDELDAIAPKREKT--HGEVERRIVSQLLTLMDGLKQRAHVIV 343
Query: 113 L 113
+
Sbjct: 344 M 344
Score = 30.4 bits (67), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 27/30 (90%), Gaps = 1/30 (3%)
Query: 8 ITFKDVRGVDEAKQELKEIVEF-LKNPEKF 36
+T++D+ G+++ K+EL+E+V++ +++P+KF
Sbjct: 474 VTWEDIGGLEDVKRELQELVQYPVEHPDKF 503
>pdb|4B4T|I Chain I, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 35/55 (63%), Gaps = 2/55 (3%)
Query: 52 RRVRDLFKAAKDRTPCVVFIDEIDSVGAKR--TNSVLHPYANQTINQLLAEMDGF 104
R R +FK A + P +VFIDEID++G KR +NS +T+ +LL ++DGF
Sbjct: 262 RLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGF 316
>pdb|4B4T|H Chain H, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 467
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 64/151 (42%), Gaps = 41/151 (27%)
Query: 4 EEINITFKDVRGVDEAKQELKEIVEF-LKNPEKFST------------------------ 38
E+ ++T+ DV G + ++L+E+VE L +PE+F+T
Sbjct: 202 EKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCAR 261
Query: 39 --------------XXXXXXXXXXXXARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNS 84
AR VR+LF+ A+ + C++F DEID+VG R +
Sbjct: 262 AVANRTDATFIRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDD 321
Query: 85 VLHP--YANQTINQLLAEMDGFHQNEGVVVL 113
+T+ +L+ ++DGF + V+
Sbjct: 322 GAGGDNEVQRTMLELITQLDGFDPRGNIKVM 352
>pdb|4B4T|J Chain J, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 405
Score = 46.6 bits (109), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
Query: 51 ARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRT--NSVLHPYANQTINQLLAEMDGFHQNE 108
+R VR+LF A++ P ++F+DEIDS+G+ R + +T+ +LL ++DGF ++
Sbjct: 227 SRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSK 286
Query: 109 GVVVL 113
+ ++
Sbjct: 287 NIKII 291
>pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|B Chain B, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|C Chain C, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|D Chain D, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|E Chain E, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|F Chain F, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
Length = 489
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
Query: 54 VRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTI-NQLLAEMDGFHQNEGVVV 112
+R F+ A+ P ++FIDE+D++ KR + H + I +QLL MDG Q V+V
Sbjct: 286 LRKAFEEAEKNAPAIIFIDELDAIAPKREKT--HGEVERRIVSQLLTLMDGLKQRAHVIV 343
Query: 113 L 113
+
Sbjct: 344 M 344
>pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
pdb|3HU3|B Chain B, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
Length = 489
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
Query: 54 VRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTI-NQLLAEMDGFHQNEGVVV 112
+R F+ A+ P ++FIDE+D++ KR + H + I +QLL MDG Q V+V
Sbjct: 286 LRKAFEEAEKNAPAIIFIDELDAIAPKREKT--HGEVERRIVSQLLTLMDGLKQRAHVIV 343
Query: 113 L 113
+
Sbjct: 344 M 344
>pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|B Chain B, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|C Chain C, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|D Chain D, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|E Chain E, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|F Chain F, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
Length = 489
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
Query: 54 VRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTI-NQLLAEMDGFHQNEGVVV 112
+R F+ A+ P ++FIDE+D++ KR + H + I +QLL MDG Q V+V
Sbjct: 286 LRKAFEEAEKNAPAIIFIDELDAIAPKREKT--HGEVERRIVSQLLTLMDGLKQRAHVIV 343
Query: 113 L 113
+
Sbjct: 344 M 344
>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain
Of Membrane Fusion Atpase P97
pdb|1S3S|A Chain A, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|B Chain B, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|C Chain C, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|D Chain D, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|E Chain E, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|F Chain F, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
Length = 458
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
Query: 54 VRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTI-NQLLAEMDGFHQNEGVVV 112
+R F+ A+ P ++FIDE+D++ KR + H + I +QLL MDG Q V+V
Sbjct: 286 LRKAFEEAEKNAPAIIFIDELDAIAPKREKT--HGEVERRIVSQLLTLMDGLKQRAHVIV 343
Query: 113 L 113
+
Sbjct: 344 M 344
>pdb|2ZAM|A Chain A, Crystal Structure Of Mouse Skd1VPS4B APO-Form
pdb|2ZAN|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ATP-Form
pdb|2ZAO|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ADP-Form
Length = 444
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 37/61 (60%), Gaps = 2/61 (3%)
Query: 54 VRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFH-QNEGVVV 112
V++LF+ A++ P ++FIDEIDS+ R+ + A + + L +M G N+G++V
Sbjct: 216 VKNLFQLARENKPSIIFIDEIDSLCGSRSENESEA-ARRIKTEFLVQMQGVGVDNDGILV 274
Query: 113 L 113
L
Sbjct: 275 L 275
>pdb|1XWI|A Chain A, Crystal Structure Of Vps4b
Length = 322
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 37/61 (60%), Gaps = 2/61 (3%)
Query: 54 VRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFH-QNEGVVV 112
V++LF+ A++ P ++FIDEIDS+ R+ + A + + L +M G N+G++V
Sbjct: 94 VKNLFQLARENKPSIIFIDEIDSLCGSRSENESE-AARRIKTEFLVQMQGVGVDNDGILV 152
Query: 113 L 113
L
Sbjct: 153 L 153
>pdb|3D8B|A Chain A, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
pdb|3D8B|B Chain B, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
Length = 357
Score = 38.1 bits (87), Expect = 0.001, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 52 RRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDG 103
+ VR LF A+ + P V+FIDEIDS+ ++R + H + + + L ++DG
Sbjct: 163 KMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGE-HESSRRIKTEFLVQLDG 213
>pdb|2RKO|A Chain A, Crystal Structure Of The Vps4p-Dimer
Length = 331
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 38/62 (61%), Gaps = 4/62 (6%)
Query: 54 VRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTI-NQLLAEMDGF-HQNEGVV 111
V+ LF A++ P ++FIDE+D++ R A++ I +LL +M+G + ++GV+
Sbjct: 108 VKQLFAMARENKPSIIFIDEVDALTGTRGEG--ESEASRRIKTELLVQMNGVGNDSQGVL 165
Query: 112 VL 113
VL
Sbjct: 166 VL 167
>pdb|3EIH|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
Length = 340
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 38/62 (61%), Gaps = 4/62 (6%)
Query: 54 VRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTI-NQLLAEMDGF-HQNEGVV 111
V+ LF A++ P ++FID++D++ R A++ I +LL +M+G + ++GV+
Sbjct: 117 VKQLFAMARENKPSIIFIDQVDALTGTRGEG--ESEASRRIKTELLVQMNGVGNDSQGVL 174
Query: 112 VL 113
VL
Sbjct: 175 VL 176
>pdb|3EIE|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The So4-Bound
State
Length = 322
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 38/62 (61%), Gaps = 4/62 (6%)
Query: 54 VRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTI-NQLLAEMDGF-HQNEGVV 111
V+ LF A++ P ++FID++D++ R A++ I +LL +M+G + ++GV+
Sbjct: 99 VKQLFAMARENKPSIIFIDQVDALTGTRGEG--ESEASRRIKTELLVQMNGVGNDSQGVL 156
Query: 112 VL 113
VL
Sbjct: 157 VL 158
>pdb|2QP9|X Chain X, Crystal Structure Of S.Cerevisiae Vps4
pdb|2QPA|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
Length = 355
Score = 33.9 bits (76), Expect = 0.025, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 38/62 (61%), Gaps = 4/62 (6%)
Query: 54 VRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTI-NQLLAEMDGF-HQNEGVV 111
V+ LF A++ P ++FID++D++ R A++ I +LL +M+G + ++GV+
Sbjct: 132 VKQLFAMARENKPSIIFIDQVDALTGTRGEG--ESEASRRIKTELLVQMNGVGNDSQGVL 189
Query: 112 VL 113
VL
Sbjct: 190 VL 191
>pdb|3VFD|A Chain A, Human Spastin Aaa Domain
Length = 389
Score = 33.1 bits (74), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 54 VRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQ 106
VR LF A++ P ++FID++DS+ +R H + + + L E DG
Sbjct: 196 VRALFAVARELQPSIIFIDQVDSLLCERREGE-HDASRRLKTEFLIEFDGVQS 247
>pdb|3B9P|A Chain A, Spastin
Length = 297
Score = 32.3 bits (72), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 54 VRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGFHQN 107
VR LF A+ P ++FIDE+DS+ +S H + + + L E DG N
Sbjct: 102 VRALFAVARHMQPSIIFIDEVDSL-LSERSSSEHEASRRLKTEFLVEFDGLPGN 154
>pdb|1MBL|A Chain A, A Catalytically-Impaired Class A Beta-Lactamase: 2
Angstroms Crystal Structure And Kinetics Of The Bacillus
Licheniformis E166a Mutant
pdb|1MBL|B Chain B, A Catalytically-Impaired Class A Beta-Lactamase: 2
Angstroms Crystal Structure And Kinetics Of The Bacillus
Licheniformis E166a Mutant
Length = 256
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 21/31 (67%)
Query: 7 NITFKDVRGVDEAKQELKEIVEFLKNPEKFS 37
N+ K + G + K+EL++I + + NPE+F+
Sbjct: 103 NLILKQIGGPESLKKELRKIGDEVTNPERFA 133
>pdb|3LY3|A Chain A, Crystal Structure Of Fluorophore-Labeled Class A
Beta-Lactamase Penp
Length = 259
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 20/30 (66%)
Query: 7 NITFKDVRGVDEAKQELKEIVEFLKNPEKF 36
N+ K + G + K+EL++I + + NPE+F
Sbjct: 104 NLILKQIGGPESLKKELRKIGDEVTNPERF 133
>pdb|3LY4|A Chain A, Crystal Structure Of Fluorophore-Labeled Class A
-Lactamase Penp- E166cb In Compelx With Penicillin G
pdb|3M2J|A Chain A, Crystal Structure Of Fluorescein-Labeled Class A
-Lactamase Penp
pdb|3M2J|B Chain B, Crystal Structure Of Fluorescein-Labeled Class A
-Lactamase Penp
pdb|3M2K|A Chain A, Crystal Structure Of Fluorescein-Labeled Class A -Beta
Lactamase Penp In Complex With Cefotaxime
pdb|3M2K|B Chain B, Crystal Structure Of Fluorescein-Labeled Class A -Beta
Lactamase Penp In Complex With Cefotaxime
Length = 257
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 20/30 (66%)
Query: 7 NITFKDVRGVDEAKQELKEIVEFLKNPEKF 36
N+ K + G + K+EL++I + + NPE+F
Sbjct: 104 NLILKQIGGPESLKKELRKIGDEVTNPERF 133
>pdb|3SH7|A Chain A, Crystal Structure Of Fluorophore-Labeled Beta-Lactamase
Penp
pdb|3SH7|B Chain B, Crystal Structure Of Fluorophore-Labeled Beta-Lactamase
Penp
pdb|3SH8|A Chain A, Crystal Structure Of Fluorophore-Labeled Beta-Lactamase
Penp In Complex With Cephaloridine
pdb|3SH8|B Chain B, Crystal Structure Of Fluorophore-Labeled Beta-Lactamase
Penp In Complex With Cephaloridine
pdb|3SH9|A Chain A, Crystal Structure Of Fluorophore-Labeled Beta-Lactamase
Penp In Complex With Cefotaxime
pdb|3SH9|B Chain B, Crystal Structure Of Fluorophore-Labeled Beta-Lactamase
Penp In Complex With Cefotaxime
Length = 266
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 20/30 (66%)
Query: 7 NITFKDVRGVDEAKQELKEIVEFLKNPEKF 36
N+ K + G + K+EL++I + + NPE+F
Sbjct: 109 NLILKQIGGPESLKKELRKIGDEVTNPERF 138
>pdb|2BLM|A Chain A, Beta-Lactamase Of Bacillus Licheniformis 749(Slash)c At 2
Angstroms Resolution
pdb|2BLM|B Chain B, Beta-Lactamase Of Bacillus Licheniformis 749(Slash)c At 2
Angstroms Resolution
pdb|4BLM|A Chain A, Beta-Lactamase Of Bacillus Licheniformis 749(Slash)c.
Refinement At 2 Angstroms Resolution And Analysis Of
Hydration
pdb|4BLM|B Chain B, Beta-Lactamase Of Bacillus Licheniformis 749(Slash)c.
Refinement At 2 Angstroms Resolution And Analysis Of
Hydration
Length = 265
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 20/30 (66%)
Query: 7 NITFKDVRGVDEAKQELKEIVEFLKNPEKF 36
N+ K + G + K+EL++I + + NPE+F
Sbjct: 108 NLILKQIGGPESLKKELRKIGDEVTNPERF 137
>pdb|1I2S|A Chain A, Beta-Lactamase From Bacillus Licheniformis Bs3
pdb|1I2S|B Chain B, Beta-Lactamase From Bacillus Licheniformis Bs3
pdb|1I2W|A Chain A, Beta-Lactamase From Bacillus Licheniformis Bs3 Complexed
With Cefoxitin
pdb|1I2W|B Chain B, Beta-Lactamase From Bacillus Licheniformis Bs3 Complexed
With Cefoxitin
Length = 282
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 20/30 (66%)
Query: 7 NITFKDVRGVDEAKQELKEIVEFLKNPEKF 36
N+ K + G + K+EL++I + + NPE+F
Sbjct: 125 NLILKQIGGPESLKKELRKIGDEVTNPERF 154
>pdb|1W7F|A Chain A, Crystal Structure Of The Class A Beta-Lactamase Bs3
Inhibited With Isocitrate
pdb|1W7F|B Chain B, Crystal Structure Of The Class A Beta-Lactamase Bs3
Inhibited With Isocitrate
Length = 307
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 20/30 (66%)
Query: 7 NITFKDVRGVDEAKQELKEIVEFLKNPEKF 36
N+ K + G + K+EL++I + + NPE+F
Sbjct: 150 NLILKQIGGPESLKKELRKIGDEVTNPERF 179
>pdb|3B3X|A Chain A, Crystal Structure Of Class A Beta-Lactamase Of Bacillus
Licheniformis Bs3 With Aminocitrate
pdb|3B3X|B Chain B, Crystal Structure Of Class A Beta-Lactamase Of Bacillus
Licheniformis Bs3 With Aminocitrate
pdb|2WK0|A Chain A, Crystal Structure Of The Class A Beta-Lactamase Bs3
Inhibited By 6-Beta-Iodopenicillanate.
pdb|2WK0|B Chain B, Crystal Structure Of The Class A Beta-Lactamase Bs3
Inhibited By 6-Beta-Iodopenicillanate.
pdb|2X71|A Chain A, Structural Basis For The Interaction Of Lactivicins With
Serine Beta-Lactamases
pdb|2X71|B Chain B, Structural Basis For The Interaction Of Lactivicins With
Serine Beta-Lactamases
pdb|4A5R|A Chain A, Crystal Structure Of Class A Beta-Lactamase From Bacillus
Licheniformis Bs3 With Tazobactam
pdb|4A5R|B Chain B, Crystal Structure Of Class A Beta-Lactamase From Bacillus
Licheniformis Bs3 With Tazobactam
Length = 265
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 20/30 (66%)
Query: 7 NITFKDVRGVDEAKQELKEIVEFLKNPEKF 36
N+ K + G + K+EL++I + + NPE+F
Sbjct: 108 NLILKQIGGPESLKKELRKIGDEVTNPERF 137
>pdb|2Y91|A Chain A, Crystal Structure Of Class A Beta-Lactamase From Bacillus
Licheniformis Bs3 With Clavulanic Acid
pdb|2Y91|B Chain B, Crystal Structure Of Class A Beta-Lactamase From Bacillus
Licheniformis Bs3 With Clavulanic Acid
Length = 265
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 20/30 (66%)
Query: 7 NITFKDVRGVDEAKQELKEIVEFLKNPEKF 36
N+ K + G + K+EL++I + + NPE+F
Sbjct: 108 NLILKQIGGPESLKKELRKIGDEVTNPERF 137
>pdb|3SOI|A Chain A, Crystallographic Structure Of Bacillus Licheniformis
Beta-Lactamase W210fW229FW251F AT 1.73 ANGSTROM
RESOLUTION
pdb|3SOI|B Chain B, Crystallographic Structure Of Bacillus Licheniformis
Beta-Lactamase W210fW229FW251F AT 1.73 ANGSTROM
RESOLUTION
Length = 258
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 20/30 (66%)
Query: 7 NITFKDVRGVDEAKQELKEIVEFLKNPEKF 36
N+ K + G + K+EL++I + + NPE+F
Sbjct: 105 NLILKQIGGPESLKKELRKIGDEVTNPERF 134
>pdb|4IGG|A Chain A, Full-Length Human Alpha-Catenin Crystal Structure
pdb|4IGG|B Chain B, Full-Length Human Alpha-Catenin Crystal Structure
Length = 832
Score = 26.6 bits (57), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 22/43 (51%)
Query: 62 KDRTPCVVFIDEIDSVGAKRTNSVLHPYANQTINQLLAEMDGF 104
+D CV+ + E D G RT + A + I+ + +EMD +
Sbjct: 440 EDVNKCVIALQEKDVDGLDRTAGAIRGRAARVIHVVTSEMDNY 482
>pdb|1E29|A Chain A, Psii Associated Cytochrome C549 From Synechocystis Sp
Length = 135
Score = 26.6 bits (57), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 9/31 (29%), Positives = 19/31 (61%)
Query: 6 INITFKDVRGVDEAKQELKEIVEFLKNPEKF 36
+++ D+ G + + + +VEFLKNP+ +
Sbjct: 52 VSLGLADLAGAEPRRDNVLALVEFLKNPKSY 82
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,796,312
Number of Sequences: 62578
Number of extensions: 80772
Number of successful extensions: 357
Number of sequences better than 100.0: 59
Number of HSP's better than 100.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 249
Number of HSP's gapped (non-prelim): 86
length of query: 113
length of database: 14,973,337
effective HSP length: 77
effective length of query: 36
effective length of database: 10,154,831
effective search space: 365573916
effective search space used: 365573916
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)