BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5205
(113 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P54813|YME1_CAEEL ATP-dependent zinc metalloprotease YME1 homolog OS=Caenorhabditis
elegans GN=ymel-1 PE=3 SV=2
Length = 723
Score = 161 bits (408), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 79/151 (52%), Positives = 102/151 (67%), Gaps = 38/151 (25%)
Query: 1 VDPEEINITFKDVRGVDEAKQELKEIVEFLKNPEKFSTLGGKLPKGVLL----------- 49
V+PE++ +TF DVRG+DEAK E++EIV++LK+PEK+S LGG+LPKGVLL
Sbjct: 238 VNPEDVQVTFDDVRGMDEAKLEVEEIVDYLKDPEKYSRLGGRLPKGVLLVGPPGTGKTLL 297
Query: 50 ---------------------------GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRT 82
GARRVRDLF AK R PC++FIDEIDSVG+KR
Sbjct: 298 ARAIAGEAQVPFFHTAGSEFDEVLVGQGARRVRDLFDKAKARAPCIIFIDEIDSVGSKRV 357
Query: 83 NSVLHPYANQTINQLLAEMDGFHQNEGVVVL 113
++ +HPYANQTINQLL+EMDGF +NEG++V+
Sbjct: 358 SNSIHPYANQTINQLLSEMDGFTRNEGIIVI 388
>sp|O88967|YMEL1_MOUSE ATP-dependent zinc metalloprotease YME1L1 OS=Mus musculus GN=Yme1l1
PE=2 SV=1
Length = 715
Score = 152 bits (383), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 77/152 (50%), Positives = 98/152 (64%), Gaps = 39/152 (25%)
Query: 1 VDPEEI-NITFKDVRGVDEAKQELKEIVEFLKNPEKFSTLGGKLPKGVLL---------- 49
VDP ++ N+TF+ V+GV+EAKQEL+E+VEFLKNP+KF+ LGGKLPKG+LL
Sbjct: 270 VDPVQMKNVTFEHVKGVEEAKQELQEVVEFLKNPQKFTVLGGKLPKGILLVGPPGTGKTL 329
Query: 50 ----------------------------GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKR 81
GA R+R+LF+ AK PCV+FIDE+DSVG KR
Sbjct: 330 LARAVAGEADVPFYYASGSEFDEMFVGVGASRIRNLFREAKANAPCVIFIDELDSVGGKR 389
Query: 82 TNSVLHPYANQTINQLLAEMDGFHQNEGVVVL 113
S +HPY+ QTINQLLAEMDGF NEGV+++
Sbjct: 390 IESPMHPYSRQTINQLLAEMDGFKPNEGVIII 421
>sp|Q96TA2|YMEL1_HUMAN ATP-dependent zinc metalloprotease YME1L1 OS=Homo sapiens GN=YME1L1
PE=1 SV=2
Length = 773
Score = 151 bits (382), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 77/152 (50%), Positives = 98/152 (64%), Gaps = 39/152 (25%)
Query: 1 VDPEEI-NITFKDVRGVDEAKQELKEIVEFLKNPEKFSTLGGKLPKGVLL---------- 49
VDP ++ N+TF+ V+GV+EAKQEL+E+VEFLKNP+KF+ LGGKLPKG+LL
Sbjct: 328 VDPVQMKNVTFEHVKGVEEAKQELQEVVEFLKNPQKFTILGGKLPKGILLVGPPGTGKTL 387
Query: 50 ----------------------------GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKR 81
GA R+R+LF+ AK PCV+FIDE+DSVG KR
Sbjct: 388 LARAVAGEADVPFYYASGSEFDEMFVGVGASRIRNLFREAKANAPCVIFIDELDSVGGKR 447
Query: 82 TNSVLHPYANQTINQLLAEMDGFHQNEGVVVL 113
S +HPY+ QTINQLLAEMDGF NEGV+++
Sbjct: 448 IESPMHPYSRQTINQLLAEMDGFKPNEGVIII 479
>sp|Q925S8|YMEL1_RAT ATP-dependent zinc metalloprotease YME1L1 OS=Rattus norvegicus
GN=Yme1l1 PE=2 SV=1
Length = 715
Score = 145 bits (367), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 75/152 (49%), Positives = 96/152 (63%), Gaps = 39/152 (25%)
Query: 1 VDPEEI-NITFKDVRGVDEAKQELKEIVEFLKNPEKFSTLGGKLPKGVLL---------- 49
VDP ++ N+TF+ V+GV+EAKQEL+E+VEFLKNP+KF+ LGGKLPKG+LL
Sbjct: 270 VDPVQMKNVTFEHVKGVEEAKQELQEVVEFLKNPQKFTVLGGKLPKGILLVGPPGTGKTL 329
Query: 50 ----------------------------GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKR 81
GA R+R+LF+ AK PCV+FIDE+DSVG KR
Sbjct: 330 LARAVAGEADVPFYYASGSEFDEMFVGVGASRIRNLFREAKANAPCVIFIDELDSVGGKR 389
Query: 82 TNSVLHPYANQTINQLLAEMDGFHQNEGVVVL 113
+HPY+ QTI QLLAEMDGF NEGV+++
Sbjct: 390 IEFPMHPYSRQTIIQLLAEMDGFKPNEGVIII 421
>sp|P46508|YME1_SCHMA ATP-dependent zinc metalloprotease YME1 homolog OS=Schistosoma
mansoni PE=2 SV=1
Length = 662
Score = 139 bits (351), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 72/148 (48%), Positives = 88/148 (59%), Gaps = 38/148 (25%)
Query: 4 EEINITFKDVRGVDEAKQELKEIVEFLKNPEKFSTLGGKLPKGVLL-------------- 49
E +++F DV+G DE K+EL ++VEFL+NPEKF+ +G KLPKGVLL
Sbjct: 159 ENTDVSFSDVQGCDEVKKELVDVVEFLRNPEKFNQIGAKLPKGVLLVGPPGVGKTLLAKA 218
Query: 50 ------------------------GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSV 85
GA R+R LF AK +PC+VFIDEIDSVG RT S
Sbjct: 219 VSGEAQVPFLYASGSSFDEVLVGLGASRIRQLFTTAKQNSPCLVFIDEIDSVGGNRTFSP 278
Query: 86 LHPYANQTINQLLAEMDGFHQNEGVVVL 113
HP+ANQTINQLLAEMDGF EG++VL
Sbjct: 279 HHPFANQTINQLLAEMDGFQSKEGIIVL 306
>sp|Q9FGM0|FTSHB_ARATH ATP-dependent zinc metalloprotease FTSH 11,
chloroplastic/mitochondrial OS=Arabidopsis thaliana
GN=FTSH11 PE=1 SV=1
Length = 806
Score = 134 bits (336), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 70/151 (46%), Positives = 91/151 (60%), Gaps = 40/151 (26%)
Query: 1 VDPEEINITFKDVRGVDEAKQELKEIVEFLKNPEKFSTLGGKLPKGVLL----------- 49
+ PE+ TFKDV+G D+AKQEL+E+VE+LKNP KF+ LGGKLPKG+LL
Sbjct: 352 ITPEKNVKTFKDVKGCDDAKQELEEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLL 411
Query: 50 ---------------------------GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRT 82
GARRVR LF+AAK + PC++FIDEID+VG+ R
Sbjct: 412 AKAIAGEAGVPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRK 471
Query: 83 NSVLHPYANQTINQLLAEMDGFHQNEGVVVL 113
H +T++QLL EMDGF QNEG++V+
Sbjct: 472 QWEGH--TKKTLHQLLVEMDGFEQNEGIIVM 500
>sp|A2ZVG7|FTSH9_ORYSJ ATP-dependent zinc metalloprotease FTSH 9,
chloroplastic/mitochondrial OS=Oryza sativa subsp.
japonica GN=FTSH9 PE=3 SV=1
Length = 784
Score = 130 bits (328), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 70/149 (46%), Positives = 90/149 (60%), Gaps = 40/149 (26%)
Query: 3 PEEINITFKDVRGVDEAKQELKEIVEFLKNPEKFSTLGGKLPKGVLL------------- 49
PE+ TFKDV+G D+AK+EL+E+VE+LKNP KF+ LGGKLPKG+LL
Sbjct: 320 PEKNVKTFKDVKGCDDAKKELEEVVEYLKNPSKFTRLGGKLPKGILLTGSPGTGKTLLAK 379
Query: 50 -------------------------GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNS 84
GARRVR LF+AAK + PC+VFIDEID+VG+ R
Sbjct: 380 AIAGEAGVPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCIVFIDEIDAVGSTRKQW 439
Query: 85 VLHPYANQTINQLLAEMDGFHQNEGVVVL 113
H +T++QLL EMDGF QNEG++V+
Sbjct: 440 EGH--TKKTLHQLLVEMDGFEQNEGIIVM 466
>sp|Q8LQJ8|FTSH5_ORYSJ ATP-dependent zinc metalloprotease FTSH 5, mitochondrial OS=Oryza
sativa subsp. japonica GN=FTSH5 PE=3 SV=1
Length = 715
Score = 130 bits (327), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 68/147 (46%), Positives = 87/147 (59%), Gaps = 39/147 (26%)
Query: 5 EINITFKDVRGVDEAKQELKEIVEFLKNPEKFSTLGGKLPKGVLL--------------- 49
E N F DV+GVDEAK EL+EIV +L++P++F+ LGGKLPKGVLL
Sbjct: 224 ESNTKFSDVKGVDEAKAELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAI 283
Query: 50 -----------------------GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVL 86
GARRVRDLF AAK R+PC++F+DEID++G R N
Sbjct: 284 AGEAGVPFFSCSGSEFEEMFVGVGARRVRDLFAAAKKRSPCIIFMDEIDAIGGSR-NPKD 342
Query: 87 HPYANQTINQLLAEMDGFHQNEGVVVL 113
Y T+NQLL E+DGF QNEG++V+
Sbjct: 343 QQYMKMTLNQLLVELDGFKQNEGIIVI 369
>sp|Q8LQJ9|FTSH4_ORYSJ ATP-dependent zinc metalloprotease FTSH 4, mitochondrial OS=Oryza
sativa subsp. japonica GN=FTSH4 PE=3 SV=1
Length = 709
Score = 125 bits (314), Expect = 8e-29, Method: Composition-based stats.
Identities = 66/142 (46%), Positives = 85/142 (59%), Gaps = 39/142 (27%)
Query: 10 FKDVRGVDEAKQELKEIVEFLKNPEKFSTLGGKLPKGVLL-------------------- 49
F DV+GVDEAK EL+EIV +L++P++F+ LGGKLPKGVLL
Sbjct: 222 FSDVKGVDEAKAELEEIVHYLRDPKRFTHLGGKLPKGVLLVGPPGTGKTMLARAVAGEAG 281
Query: 50 ------------------GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYAN 91
GARRVRDLF AAK R+PC++F+DEID++G R N Y
Sbjct: 282 VPFFSCSGSEFEEMFVGVGARRVRDLFAAAKKRSPCIIFMDEIDAIGGSR-NPKDQQYMR 340
Query: 92 QTINQLLAEMDGFHQNEGVVVL 113
T+NQLL E+DGF QNEG++V+
Sbjct: 341 MTLNQLLVELDGFKQNEGIIVI 362
>sp|O80983|FTSH4_ARATH ATP-dependent zinc metalloprotease FTSH 4, mitochondrial
OS=Arabidopsis thaliana GN=FTSH4 PE=1 SV=2
Length = 717
Score = 124 bits (311), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 65/142 (45%), Positives = 84/142 (59%), Gaps = 39/142 (27%)
Query: 10 FKDVRGVDEAKQELKEIVEFLKNPEKFSTLGGKLPKGVLL-------------------- 49
F DV+GVDEAK EL+EIV +L++P++F+ LGGKLPKGVLL
Sbjct: 226 FSDVKGVDEAKAELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAG 285
Query: 50 ------------------GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPYAN 91
GARRVRDLF AAK +PC++FIDEID++G R N Y
Sbjct: 286 VPFFSCSGSEFEEMFVGVGARRVRDLFSAAKKCSPCIIFIDEIDAIGGSR-NPKDQQYMK 344
Query: 92 QTINQLLAEMDGFHQNEGVVVL 113
T+NQ+L E+DGF QNEG++V+
Sbjct: 345 MTLNQMLVELDGFKQNEGIIVV 366
>sp|Q6MDI5|FTSH_PARUW ATP-dependent zinc metalloprotease FtsH OS=Protochlamydia
amoebophila (strain UWE25) GN=ftsH PE=3 SV=1
Length = 916
Score = 124 bits (310), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 68/146 (46%), Positives = 86/146 (58%), Gaps = 40/146 (27%)
Query: 8 ITFKDVRGVDEAKQELKEIVEFLKNPEKFSTLGGKLPKGVL------------------- 48
ITFKDV GVDEA +EL+EIVEFLKNP+KF++LGGK+PKGVL
Sbjct: 421 ITFKDVAGVDEALEELQEIVEFLKNPQKFTSLGGKIPKGVLCIGPPGTGKTLIAKAVAGE 480
Query: 49 -------------------LGARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSV--LH 87
+GA R+RDLF+ AK PC++F+DEID+VG R + H
Sbjct: 481 ADRPFFSISGSDFVEMFVGVGASRIRDLFEQAKKAAPCIIFMDEIDAVGRHRGVGMGGGH 540
Query: 88 PYANQTINQLLAEMDGFHQNEGVVVL 113
QT+NQLL EMDGF NEGV+++
Sbjct: 541 DEREQTLNQLLVEMDGFDTNEGVILM 566
>sp|D0MGU8|FTSH_RHOM4 ATP-dependent zinc metalloprotease FtsH OS=Rhodothermus marinus
(strain ATCC 43812 / DSM 4252 / R-10) GN=ftsH PE=3 SV=1
Length = 697
Score = 123 bits (308), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 65/147 (44%), Positives = 89/147 (60%), Gaps = 41/147 (27%)
Query: 8 ITFKDVRGVDEAKQELKEIVEFLKNPEKFSTLGGKLPKGVLL------------------ 49
+TFKDV G+DEAK+E+ EIVEFLKNP+KF+ LGGKLPKGVLL
Sbjct: 208 VTFKDVAGLDEAKEEVAEIVEFLKNPKKFTRLGGKLPKGVLLVGPPGTGKTLLAKAVAGE 267
Query: 50 --------------------GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVLHPY 89
GA RVRDLF+ AK++ PC++FIDEID++G R ++
Sbjct: 268 AGVPFFSISGSDFVEMFVGVGAARVRDLFRQAKEKAPCIIFIDEIDAIGRSRGRGIMMGA 327
Query: 90 ANQ---TINQLLAEMDGFHQNEGVVVL 113
++ T+NQLL EMDGF+ ++GV+++
Sbjct: 328 NDERENTLNQLLVEMDGFNTDKGVIIM 354
>sp|P32795|YME1_YEAST Mitochondrial inner membrane i-AAA protease supercomplex subunit
YME1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=YME1 PE=1 SV=1
Length = 747
Score = 122 bits (307), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 64/151 (42%), Positives = 86/151 (56%), Gaps = 39/151 (25%)
Query: 1 VDPEEINITFKDVRGVDEAKQELKEIVEFLKNPEKFSTLGGKLPKGVLL----------- 49
VD + N+ F DV G DEA+ EL+EIV+FLK+P K+ +LGGKLPKGVLL
Sbjct: 271 VDVAKTNVKFDDVCGCDEARAELEEIVDFLKDPTKYESLGGKLPKGVLLTGPPGTGKTLL 330
Query: 50 ---------------------------GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRT 82
GA+R+RDLF A+ R P ++FIDE+D++G KR
Sbjct: 331 ARATAGEAGVDFFFMSGSEFDEVYVGVGAKRIRDLFAQARSRAPAIIFIDELDAIGGKR- 389
Query: 83 NSVLHPYANQTINQLLAEMDGFHQNEGVVVL 113
N YA QT+NQLL E+DGF Q G++++
Sbjct: 390 NPKDQAYAKQTLNQLLVELDGFSQTSGIIII 420
>sp|A6LD25|FTSH_PARD8 ATP-dependent zinc metalloprotease FtsH OS=Parabacteroides
distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152)
GN=ftsH PE=3 SV=1
Length = 684
Score = 121 bits (304), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 67/147 (45%), Positives = 84/147 (57%), Gaps = 41/147 (27%)
Query: 8 ITFKDVRGVDEAKQELKEIVEFLKNPEKFSTLGGKLPKGVLL------------------ 49
+TFKDV G+ EAKQE++EIV FLKNPEK++ LGGK+PKG LL
Sbjct: 193 VTFKDVAGLAEAKQEVEEIVSFLKNPEKYTELGGKIPKGALLVGPPGTGKTLLAKAVAGE 252
Query: 50 --------------------GARRVRDLFKAAKDRTPCVVFIDEIDSVG---AKRTNSVL 86
GA RVRDLF+ AK+++PC+VFIDEID+VG K N
Sbjct: 253 ANVPFFSLSGSDFVEMFVGVGASRVRDLFRQAKEKSPCIVFIDEIDAVGRARGKNANMNS 312
Query: 87 HPYANQTINQLLAEMDGFHQNEGVVVL 113
+ T+NQLL EMDGF N GV++L
Sbjct: 313 NDERENTLNQLLTEMDGFGSNSGVIIL 339
>sp|D1BLD0|FTSH_VEIPT ATP-dependent zinc metalloprotease FtsH OS=Veillonella parvula
(strain ATCC 10790 / DSM 2008 / JCM 12972 / Te3) GN=ftsH
PE=3 SV=1
Length = 642
Score = 120 bits (302), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 65/148 (43%), Positives = 84/148 (56%), Gaps = 40/148 (27%)
Query: 6 INITFKDVRGVDEAKQELKEIVEFLKNPEKFSTLGGKLPKGVLL---------------- 49
+ ++FKDV G +EAKQEL+E+VEFLK+P KF+T+G K+PKGVLL
Sbjct: 149 VKVSFKDVAGAEEAKQELEEVVEFLKDPGKFTTIGAKIPKGVLLAGPPGTGKTLLAKAVA 208
Query: 50 ----------------------GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSV-- 85
GA RVRDLF AK PC++FIDEID+VG +R +
Sbjct: 209 GEAGVPFFTISGSDFVEMFVGVGASRVRDLFTQAKKNAPCIIFIDEIDAVGRQRGAGLGG 268
Query: 86 LHPYANQTINQLLAEMDGFHQNEGVVVL 113
H QT+NQLL EMDGF NEG++ +
Sbjct: 269 GHDEREQTLNQLLVEMDGFGANEGIITI 296
>sp|D1CDT8|FTSH_THET1 ATP-dependent zinc metalloprotease FtsH OS=Thermobaculum terrenum
(strain ATCC BAA-798 / YNP1) GN=ftsH PE=3 SV=1
Length = 646
Score = 119 bits (298), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 64/151 (42%), Positives = 85/151 (56%), Gaps = 41/151 (27%)
Query: 4 EEINITFKDVRGVDEAKQELKEIVEFLKNPEKFSTLGGKLPKGVLL-------------- 49
E +TF DV G++EAKQEL EIV+FLKNP+K+ LGG +PKGVLL
Sbjct: 190 ESTRVTFDDVAGIEEAKQELAEIVDFLKNPQKYQRLGGTIPKGVLLIGPPGTGKTLLARA 249
Query: 50 ------------------------GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSV 85
GA RVR+LF+ AK PC++F+DE+D++G +R +S+
Sbjct: 250 VAGEAGVPFFSMSGSEFVEMIVGVGAARVRELFQQAKKEAPCIIFVDELDAIGRRRGSSI 309
Query: 86 ---LHPYANQTINQLLAEMDGFHQNEGVVVL 113
H QT+NQLL EMDGF +GV+VL
Sbjct: 310 NVGGHDEREQTLNQLLVEMDGFDSRQGVIVL 340
>sp|B4SCV5|FTSH_PELPB ATP-dependent zinc metalloprotease FtsH OS=Pelodictyon
phaeoclathratiforme (strain DSM 5477 / BU-1) GN=ftsH
PE=3 SV=1
Length = 662
Score = 119 bits (297), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 68/149 (45%), Positives = 82/149 (55%), Gaps = 40/149 (26%)
Query: 5 EINITFKDVRGVDEAKQELKEIVEFLKNPEKFSTLGGKLPKGVLL--------------- 49
E+ TFKDV GVDEA +EL+E VEFL NPEKF +GGK+PKGVLL
Sbjct: 204 EVKTTFKDVAGVDEAIEELQETVEFLTNPEKFQKIGGKIPKGVLLLGPPGTGKTLLAKAI 263
Query: 50 -----------------------GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSV- 85
GA RVRDLF+ AK PC++FIDEID+VG R +
Sbjct: 264 AGEAKVPFFSISGADFVEMFVGVGAARVRDLFEQAKKNAPCIIFIDEIDAVGRSRGAGLG 323
Query: 86 -LHPYANQTINQLLAEMDGFHQNEGVVVL 113
H QT+NQLL EMDGF NE V+++
Sbjct: 324 GGHDEREQTLNQLLVEMDGFTTNENVILI 352
>sp|B0B970|FTSH_CHLT2 ATP-dependent zinc metalloprotease FtsH OS=Chlamydia trachomatis
serovar L2 (strain 434/Bu / ATCC VR-902B) GN=ftsH PE=3
SV=1
Length = 913
Score = 119 bits (297), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 63/146 (43%), Positives = 84/146 (57%), Gaps = 40/146 (27%)
Query: 8 ITFKDVRGVDEAKQELKEIVEFLKNPEKFSTLGGKLPKGVLL------------------ 49
+TF DV G++EAK+EL EIV+FLKNP KF++LGG++PKG+LL
Sbjct: 423 VTFADVAGIEEAKEELVEIVDFLKNPTKFTSLGGRIPKGILLIGAPGTGKTLIAKAVAGE 482
Query: 50 --------------------GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSV--LH 87
GA R+RD+F+ AK PC++FIDEID+VG R + H
Sbjct: 483 ADRPFFSIAGSDFVEMFVGVGASRIRDMFEQAKRNAPCIIFIDEIDAVGRHRGAGIGGGH 542
Query: 88 PYANQTINQLLAEMDGFHQNEGVVVL 113
QT+NQLL EMDGF NEGV+++
Sbjct: 543 DEREQTLNQLLVEMDGFGTNEGVILM 568
>sp|Q1PDW5|FTSH6_ARATH ATP-dependent zinc metalloprotease FTSH 6, chloroplastic
OS=Arabidopsis thaliana GN=FTSH6 PE=2 SV=1
Length = 688
Score = 118 bits (295), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 68/146 (46%), Positives = 81/146 (55%), Gaps = 40/146 (27%)
Query: 8 ITFKDVRGVDEAKQELKEIVEFLKNPEKFSTLGGKLPKGVLL------------------ 49
ITF+DV GVDEAKQ+ +EIVEFLK PEKFS LG K+PKGVLL
Sbjct: 221 ITFEDVAGVDEAKQDFEEIVEFLKTPEKFSALGAKIPKGVLLTGPPGTGKTLLAKAIAGE 280
Query: 50 --------------------GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSV--LH 87
GA R RDLF AK +PC+VFIDEID+VG R + +
Sbjct: 281 AGVPFFSLSGSEFIEMFVGVGASRARDLFNKAKANSPCIVFIDEIDAVGRMRGTGIGGGN 340
Query: 88 PYANQTINQLLAEMDGFHQNEGVVVL 113
QT+NQ+L EMDGF N GV+V+
Sbjct: 341 DEREQTLNQILTEMDGFAGNTGVIVI 366
>sp|O80860|FTSH2_ARATH ATP-dependent zinc metalloprotease FTSH 2, chloroplastic
OS=Arabidopsis thaliana GN=FTSH2 PE=1 SV=1
Length = 695
Score = 118 bits (295), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 65/146 (44%), Positives = 82/146 (56%), Gaps = 40/146 (27%)
Query: 8 ITFKDVRGVDEAKQELKEIVEFLKNPEKFSTLGGKLPKGVLL------------------ 49
+TF DV GVDEAKQ+ E+VEFLK PE+F+ +G K+PKGVLL
Sbjct: 224 VTFDDVAGVDEAKQDFMEVVEFLKKPERFTAVGAKIPKGVLLIGPPGTGKTLLAKAIAGE 283
Query: 50 --------------------GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSV--LH 87
GA RVRDLFK AK+ PC+VF+DEID+VG +R + +
Sbjct: 284 AGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGN 343
Query: 88 PYANQTINQLLAEMDGFHQNEGVVVL 113
QT+NQLL EMDGF N GV+V+
Sbjct: 344 DEREQTLNQLLTEMDGFEGNTGVIVV 369
>sp|D5HA94|FTSH2_SALRM ATP-dependent zinc metalloprotease FtsH 2 OS=Salinibacter ruber
(strain M8) GN=ftsH2 PE=3 SV=1
Length = 683
Score = 118 bits (295), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 64/152 (42%), Positives = 88/152 (57%), Gaps = 40/152 (26%)
Query: 2 DPEEINITFKDVRGVDEAKQELKEIVEFLKNPEKFSTLGGKLPKGVLL------------ 49
D +E + TF DV G D AK+EL+EI++FLKNP++F LGGK+PKGVLL
Sbjct: 179 DKDEEDTTFDDVAGADSAKEELREIIKFLKNPKRFEGLGGKVPKGVLLVGPPGTGKTLLA 238
Query: 50 --------------------------GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTN 83
GA RVRD+F AK+ +P ++FIDE+DS+G KR
Sbjct: 239 RAVAGEANAPFFSVSGSDFMEMFVGVGASRVRDMFSEAKETSPAIIFIDELDSIGRKRGA 298
Query: 84 SV--LHPYANQTINQLLAEMDGFHQNEGVVVL 113
+ + QT+NQLL+E+DGF +NEGV+V+
Sbjct: 299 GLGGGNDEREQTLNQLLSELDGFEENEGVIVM 330
>sp|Q9BAE0|FTSH_MEDSA ATP-dependent zinc metalloprotease FTSH, chloroplastic OS=Medicago
sativa GN=FTSH PE=2 SV=1
Length = 706
Score = 117 bits (294), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 66/149 (44%), Positives = 83/149 (55%), Gaps = 40/149 (26%)
Query: 5 EINITFKDVRGVDEAKQELKEIVEFLKNPEKFSTLGGKLPKGVLL--------------- 49
E +TF DV G D+AK EL+E+V+FLKNP+K++ LG K+PKG LL
Sbjct: 247 ETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAV 306
Query: 50 -----------------------GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSV- 85
GA RVRDLF+ AK + PC+VFIDEID+VG +R +
Sbjct: 307 AGEAGTPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLG 366
Query: 86 -LHPYANQTINQLLAEMDGFHQNEGVVVL 113
+ QTINQLL EMDGF N GV+VL
Sbjct: 367 GGNDEREQTINQLLTEMDGFSGNSGVIVL 395
>sp|A0LN68|FTSH_SYNFM ATP-dependent zinc metalloprotease FtsH OS=Syntrophobacter
fumaroxidans (strain DSM 10017 / MPOB) GN=ftsH PE=3 SV=1
Length = 647
Score = 117 bits (294), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 66/150 (44%), Positives = 84/150 (56%), Gaps = 40/150 (26%)
Query: 4 EEINITFKDVRGVDEAKQELKEIVEFLKNPEKFSTLGGKLPKGVLL-------------- 49
+EI ITF DV G+DEAK EL+EIV+FLK+P KF LGG++PKGVLL
Sbjct: 180 KEITITFDDVAGIDEAKGELEEIVQFLKDPGKFQRLGGRIPKGVLLVGAPGTGKTLLAKA 239
Query: 50 ------------------------GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSV 85
GA RVRDLF AKD PC++FIDE+D++G R +
Sbjct: 240 VAGEAGVPFFSMSGSEFVEMFVGVGAARVRDLFGQAKDHAPCIIFIDELDALGKARGLNP 299
Query: 86 L--HPYANQTINQLLAEMDGFHQNEGVVVL 113
+ H QT+NQLL EMDGF GV+++
Sbjct: 300 IGGHDEREQTLNQLLVEMDGFDPRSGVIIM 329
>sp|Q9FH02|FTSH5_ARATH ATP-dependent zinc metalloprotease FTSH 5, chloroplastic
OS=Arabidopsis thaliana GN=FTSH5 PE=1 SV=1
Length = 704
Score = 117 bits (294), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 66/149 (44%), Positives = 83/149 (55%), Gaps = 40/149 (26%)
Query: 5 EINITFKDVRGVDEAKQELKEIVEFLKNPEKFSTLGGKLPKGVLL--------------- 49
E +TF DV G D+AK EL+E+V+FLKNP+K++ LG K+PKG LL
Sbjct: 244 ETGVTFGDVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAV 303
Query: 50 -----------------------GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSV- 85
GA RVRDLF+ AK + PC+VFIDEID+VG +R +
Sbjct: 304 AGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGMG 363
Query: 86 -LHPYANQTINQLLAEMDGFHQNEGVVVL 113
+ QTINQLL EMDGF N GV+VL
Sbjct: 364 GGNDEREQTINQLLTEMDGFSGNSGVIVL 392
>sp|O82150|FTSH_TOBAC ATP-dependent zinc metalloprotease FTSH, chloroplastic OS=Nicotiana
tabacum GN=FTSH PE=2 SV=2
Length = 714
Score = 117 bits (294), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 66/149 (44%), Positives = 83/149 (55%), Gaps = 40/149 (26%)
Query: 5 EINITFKDVRGVDEAKQELKEIVEFLKNPEKFSTLGGKLPKGVLL--------------- 49
E +TF DV G D+AK EL+E+V+FLKNP+K++ LG K+PKG LL
Sbjct: 247 ETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAV 306
Query: 50 -----------------------GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSV- 85
GA RVRDLF+ AK + PC+VFIDEID+VG +R +
Sbjct: 307 AGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGMG 366
Query: 86 -LHPYANQTINQLLAEMDGFHQNEGVVVL 113
+ QTINQLL EMDGF N GV+VL
Sbjct: 367 GGNDEREQTINQLLTEMDGFSGNSGVIVL 395
>sp|B2UE66|FTSH_RALPJ ATP-dependent zinc metalloprotease FtsH OS=Ralstonia pickettii
(strain 12J) GN=ftsH PE=3 SV=1
Length = 714
Score = 117 bits (293), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 62/150 (41%), Positives = 86/150 (57%), Gaps = 40/150 (26%)
Query: 4 EEINITFKDVRGVDEAKQELKEIVEFLKNPEKFSTLGGKLPKGVLL-------------- 49
+E +TF DV G+DEAK+EL EIV FLK+P+++ LGGK+PKGVLL
Sbjct: 233 KETGVTFADVAGIDEAKEELSEIVSFLKDPQRYQRLGGKIPKGVLLVGAPGTGKTLLAKA 292
Query: 50 ------------------------GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSV 85
GA RVRDLFK A+ + PC++FIDE+D++G R +
Sbjct: 293 VAGEAGVPFFSMSGSDFVEMFVGVGAARVRDLFKQAETKAPCIIFIDELDALGKTRALNA 352
Query: 86 L--HPYANQTINQLLAEMDGFHQNEGVVVL 113
+ + QT+NQLL EMDGF N+GV+++
Sbjct: 353 VGGNEEREQTLNQLLVEMDGFDSNKGVIIM 382
>sp|C1F8X6|FTSH_ACIC5 ATP-dependent zinc metalloprotease FtsH OS=Acidobacterium
capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670)
GN=ftsH PE=3 SV=1
Length = 639
Score = 117 bits (293), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 65/150 (43%), Positives = 84/150 (56%), Gaps = 40/150 (26%)
Query: 4 EEINITFKDVRGVDEAKQELKEIVEFLKNPEKFSTLGGKLPKGVLL-------------- 49
++ +TFKDV GVDEAK+ELKEI+EFL+ +KF LGG++PKGVLL
Sbjct: 149 QQKKVTFKDVAGVDEAKEELKEIIEFLREAQKFQKLGGRIPKGVLLVGPPGTGKTLLARA 208
Query: 50 ------------------------GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSV 85
GA RVRDLF+ K PC++FIDEID+VG R +
Sbjct: 209 VAGEANVPFFSISGSDFVEMFVGVGASRVRDLFEQGKKNAPCIIFIDEIDAVGRHRGAGL 268
Query: 86 --LHPYANQTINQLLAEMDGFHQNEGVVVL 113
H QT+NQLL EMDGF N+GV+++
Sbjct: 269 GGGHDEREQTLNQLLVEMDGFEANDGVILV 298
>sp|Q8W585|FTSH8_ARATH ATP-dependent zinc metalloprotease FTSH 8, chloroplastic
OS=Arabidopsis thaliana GN=FTSH8 PE=1 SV=1
Length = 685
Score = 117 bits (293), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 64/147 (43%), Positives = 82/147 (55%), Gaps = 40/147 (27%)
Query: 7 NITFKDVRGVDEAKQELKEIVEFLKNPEKFSTLGGKLPKGVLL----------------- 49
+TF DV GVDEAKQ+ E+VEFLK PE+F+ +G ++PKGVLL
Sbjct: 216 GVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAVGARIPKGVLLVGPPGTGKTLLAKAIAG 275
Query: 50 ---------------------GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSV--L 86
GA RVRDLFK AK+ PC+VF+DEID+VG +R +
Sbjct: 276 EAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGG 335
Query: 87 HPYANQTINQLLAEMDGFHQNEGVVVL 113
+ QT+NQLL EMDGF N GV+V+
Sbjct: 336 NDEREQTLNQLLTEMDGFEGNTGVIVV 362
>sp|Q3B6R3|FTSH_PELLD ATP-dependent zinc metalloprotease FtsH OS=Pelodictyon luteolum
(strain DSM 273) GN=ftsH PE=3 SV=1
Length = 706
Score = 117 bits (293), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 64/151 (42%), Positives = 87/151 (57%), Gaps = 41/151 (27%)
Query: 4 EEINITFKDVRGVDEAKQELKEIVEFLKNPEKFSTLGGKLPKGVLL-------------- 49
E ITFKDV G+DEAK E+ E+V+FLK+P+K++ LGGKLPKGVLL
Sbjct: 192 EHTRITFKDVAGLDEAKAEVMEVVDFLKDPKKYTRLGGKLPKGVLLVGPPGTGKTLLAKA 251
Query: 50 ------------------------GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSV 85
GA RVRDLF+ AK++ PC++FIDEID+VG R
Sbjct: 252 VAGEADVPFFSISGSDFVEMFVGVGAARVRDLFRQAKEKAPCIIFIDEIDAVGRSRGKGA 311
Query: 86 LHPYANQ---TINQLLAEMDGFHQNEGVVVL 113
+ ++ T+NQLL EMDGF ++GV+++
Sbjct: 312 MMGGNDERENTLNQLLVEMDGFATDKGVILM 342
>sp|O78516|FTSH_GUITH ATP-dependent zinc metalloprotease FtsH OS=Guillardia theta GN=ftsH
PE=3 SV=1
Length = 631
Score = 117 bits (292), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 63/146 (43%), Positives = 83/146 (56%), Gaps = 40/146 (27%)
Query: 8 ITFKDVRGVDEAKQELKEIVEFLKNPEKFSTLGGKLPKGVLL------------------ 49
+TF DV GVDEAK+E +E+V FLK PE+F+ +G K+PKGVLL
Sbjct: 170 VTFNDVAGVDEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGE 229
Query: 50 --------------------GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSV--LH 87
GA RVRDLFK AK+ +PC+VFIDEID+VG +R + +
Sbjct: 230 AGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENSPCIVFIDEIDAVGRQRGTGIGGGN 289
Query: 88 PYANQTINQLLAEMDGFHQNEGVVVL 113
QT+NQLL EMDGF N G++++
Sbjct: 290 DEREQTLNQLLTEMDGFEGNTGIIII 315
>sp|Q655S1|FTSH2_ORYSJ ATP-dependent zinc metalloprotease FTSH 2, chloroplastic OS=Oryza
sativa subsp. japonica GN=FTSH2 PE=3 SV=1
Length = 676
Score = 117 bits (292), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 63/147 (42%), Positives = 82/147 (55%), Gaps = 40/147 (27%)
Query: 7 NITFKDVRGVDEAKQELKEIVEFLKNPEKFSTLGGKLPKGVLL----------------- 49
+TF DV GVDEAKQ+ E+VEFLK PE+F+ +G ++PKGVLL
Sbjct: 210 GVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAVGARIPKGVLLVGPPGTGKTLLAKAIAG 269
Query: 50 ---------------------GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSV--L 86
GA RVRDLFK AK+ PC+VF+DEID+VG +R +
Sbjct: 270 EAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGG 329
Query: 87 HPYANQTINQLLAEMDGFHQNEGVVVL 113
+ QT+NQLL EMDGF N G++V+
Sbjct: 330 NDEREQTLNQLLTEMDGFEGNTGIIVI 356
>sp|Q39102|FTSH1_ARATH ATP-dependent zinc metalloprotease FTSH 1, chloroplastic
OS=Arabidopsis thaliana GN=FTSH1 PE=1 SV=2
Length = 716
Score = 116 bits (291), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 65/149 (43%), Positives = 83/149 (55%), Gaps = 40/149 (26%)
Query: 5 EINITFKDVRGVDEAKQELKEIVEFLKNPEKFSTLGGKLPKGVLL--------------- 49
E ++F DV G D+AK EL+E+V+FLKNP+K++ LG K+PKG LL
Sbjct: 256 ETGVSFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAV 315
Query: 50 -----------------------GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSV- 85
GA RVRDLF+ AK + PC+VFIDEID+VG +R +
Sbjct: 316 AGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGMG 375
Query: 86 -LHPYANQTINQLLAEMDGFHQNEGVVVL 113
+ QTINQLL EMDGF N GV+VL
Sbjct: 376 GGNDEREQTINQLLTEMDGFSGNSGVIVL 404
>sp|P71377|FTSH_HAEIN ATP-dependent zinc metalloprotease FtsH OS=Haemophilus influenzae
(strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=ftsH PE=3
SV=1
Length = 635
Score = 116 bits (291), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 62/153 (40%), Positives = 87/153 (56%), Gaps = 40/153 (26%)
Query: 1 VDPEEINITFKDVRGVDEAKQELKEIVEFLKNPEKFSTLGGKLPKGVLL----------- 49
++ ++I +TF DV G DEAK+E+ EIV+FL++P KF LGGK+PKG+L+
Sbjct: 141 LNQDQIKVTFADVAGCDEAKEEVGEIVDFLRDPNKFQNLGGKIPKGILMVGPPGTGKTLL 200
Query: 50 ---------------------------GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRT 82
GA RVRD+F+ AK PC++FIDEID+VG +R
Sbjct: 201 ARAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKNAPCLIFIDEIDAVGRQRG 260
Query: 83 NSV--LHPYANQTINQLLAEMDGFHQNEGVVVL 113
+ H QT+NQ+L EMDGF N+GV+V+
Sbjct: 261 AGLGGGHDEREQTLNQMLVEMDGFSGNDGVIVI 293
>sp|B8H444|FTSH_CAUCN ATP-dependent zinc metalloprotease FtsH OS=Caulobacter crescentus
(strain NA1000 / CB15N) GN=ftsH PE=2 SV=1
Length = 626
Score = 116 bits (291), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 64/146 (43%), Positives = 83/146 (56%), Gaps = 40/146 (27%)
Query: 8 ITFKDVRGVDEAKQELKEIVEFLKNPEKFSTLGGKLPKGVLL------------------ 49
ITF+DV GVDEAK+EL+E+V+FLK+P KF LGGK+PKG LL
Sbjct: 148 ITFEDVAGVDEAKEELQEVVDFLKDPAKFQRLGGKIPKGALLVGPPGTGKTLIARAVAGE 207
Query: 50 --------------------GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSV--LH 87
GA RVRD+F+ AK PC++FIDEID+VG R + +
Sbjct: 208 AGVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKNAPCIIFIDEIDAVGRHRGAGLGGGN 267
Query: 88 PYANQTINQLLAEMDGFHQNEGVVVL 113
QT+NQLL EMDGF NEG++++
Sbjct: 268 DEREQTLNQLLVEMDGFEANEGIILI 293
>sp|A9EXK6|FTSH4_SORC5 ATP-dependent zinc metalloprotease FtsH 4 OS=Sorangium cellulosum
(strain So ce56) GN=ftsH4 PE=3 SV=1
Length = 648
Score = 116 bits (291), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 63/147 (42%), Positives = 81/147 (55%), Gaps = 40/147 (27%)
Query: 7 NITFKDVRGVDEAKQELKEIVEFLKNPEKFSTLGGKLPKGVLL----------------- 49
+TF DV G+DEAK EL+EI+ FLK+P+KF LGG++PKGVL+
Sbjct: 161 KVTFADVAGIDEAKDELEEIIAFLKDPKKFQKLGGRIPKGVLMMGPPGTGKTLLARAIAG 220
Query: 50 ---------------------GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSV--L 86
GA RVRDLF+ K PC++FIDEID+VG R +
Sbjct: 221 EAGVPFFSISGSDFVEMFVGVGASRVRDLFEQGKKHAPCIIFIDEIDAVGRHRGAGLGGG 280
Query: 87 HPYANQTINQLLAEMDGFHQNEGVVVL 113
H QT+NQLL EMDGF NEGV+++
Sbjct: 281 HDEREQTLNQLLVEMDGFESNEGVIIV 307
>sp|P94304|FTSH_BACPE ATP-dependent zinc metalloprotease FtsH OS=Bacillus pseudofirmus
(strain OF4) GN=ftsH PE=3 SV=2
Length = 679
Score = 116 bits (290), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 64/144 (44%), Positives = 80/144 (55%), Gaps = 40/144 (27%)
Query: 10 FKDVRGVDEAKQELKEIVEFLKNPEKFSTLGGKLPKGVLL-------------------- 49
FKDV G DE KQEL E+VEFLK+P KFS +G ++PKGVLL
Sbjct: 165 FKDVAGADEEKQELVEVVEFLKDPRKFSAIGARIPKGVLLVGPPGTGKTLLARAVAGEAG 224
Query: 50 ------------------GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSV--LHPY 89
GA RVRDLF+ AK PC++FIDEID+VG +R + H
Sbjct: 225 VPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCIIFIDEIDAVGRQRGAGLGGGHDE 284
Query: 90 ANQTINQLLAEMDGFHQNEGVVVL 113
QT+NQLL EMDGF NEG++++
Sbjct: 285 REQTLNQLLVEMDGFSANEGIIII 308
>sp|B8J992|FTSH_ANAD2 ATP-dependent zinc metalloprotease FtsH OS=Anaeromyxobacter
dehalogenans (strain 2CP-1 / ATCC BAA-258) GN=ftsH PE=3
SV=1
Length = 706
Score = 115 bits (289), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 61/149 (40%), Positives = 82/149 (55%), Gaps = 40/149 (26%)
Query: 5 EINITFKDVRGVDEAKQELKEIVEFLKNPEKFSTLGGKLPKGVLL--------------- 49
+ +TF+D G+DEA +EL+EIVEFLK PEK+ LGG++PKGVLL
Sbjct: 200 DTGVTFQDAAGIDEAVEELQEIVEFLKTPEKYRRLGGRIPKGVLLVGPPGTGKTLLARAT 259
Query: 50 -----------------------GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSVL 86
GA RVRDLF A + PC+VFIDE+D++G R ++
Sbjct: 260 AGEAGVPFFSLSGSEFVEMFVGVGAARVRDLFAQATQKAPCIVFIDELDALGKSRNAGIM 319
Query: 87 --HPYANQTINQLLAEMDGFHQNEGVVVL 113
H QT+NQLLAEMDGF G++++
Sbjct: 320 GGHDEREQTLNQLLAEMDGFDARAGLIIM 348
>sp|Q5Z974|FTSH1_ORYSJ ATP-dependent zinc metalloprotease FTSH 1, chloroplastic OS=Oryza
sativa subsp. japonica GN=FTSH1 PE=2 SV=1
Length = 686
Score = 115 bits (289), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 66/149 (44%), Positives = 83/149 (55%), Gaps = 40/149 (26%)
Query: 5 EINITFKDVRGVDEAKQELKEIVEFLKNPEKFSTLGGKLPKGVLL--------------- 49
E +TF DV G D+AK EL+E+V+FLKNP+K++ LG K+PKG LL
Sbjct: 226 ETGVTFVDVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAV 285
Query: 50 -----------------------GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSV- 85
GA RVRDLF+ AK + PC+VFIDEID+VG +R +
Sbjct: 286 AGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKAKAPCIVFIDEIDAVGRQRGAGLG 345
Query: 86 -LHPYANQTINQLLAEMDGFHQNEGVVVL 113
+ QTINQLL EMDGF N GV+VL
Sbjct: 346 GGNDEREQTINQLLTEMDGFAGNSGVIVL 374
>sp|B3DV46|FTSH1_METI4 ATP-dependent zinc metalloprotease FtsH 1 OS=Methylacidiphilum
infernorum (isolate V4) GN=ftsH1 PE=3 SV=1
Length = 636
Score = 115 bits (289), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 66/153 (43%), Positives = 82/153 (53%), Gaps = 46/153 (30%)
Query: 4 EEINITFKDVRGVDEAKQELKEIVEFLKNPEKFSTLGGKLPKGVLL-------------- 49
E +TF DV G DEAK EL+E+V+FLKNP ++ LG K+PKGVLL
Sbjct: 173 ESTGVTFADVAGCDEAKYELQEVVDFLKNPSRYRALGAKIPKGVLLVGPPGTGKTLLAKA 232
Query: 50 ------------------------GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKR---- 81
GA RVRDLF AK + PC+VFIDE+D++G +R
Sbjct: 233 VAGEAKVPFFSISGSEFVEMFVGVGAARVRDLFGQAKSKAPCIVFIDELDAIGRQRGVRI 292
Query: 82 -TNSVLHPYANQTINQLLAEMDGFHQNEGVVVL 113
S H QT+NQLL EMDGF NEG++VL
Sbjct: 293 QVGSDEH---EQTLNQLLVEMDGFDPNEGIIVL 322
>sp|P37476|FTSH_BACSU ATP-dependent zinc metalloprotease FtsH OS=Bacillus subtilis
(strain 168) GN=ftsH PE=1 SV=1
Length = 637
Score = 115 bits (289), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 65/150 (43%), Positives = 83/150 (55%), Gaps = 40/150 (26%)
Query: 4 EEINITFKDVRGVDEAKQELKEIVEFLKNPEKFSTLGGKLPKGVLL-------------- 49
E+ + FKDV G DE KQEL E+VEFLK+P KF+ LG ++PKGVLL
Sbjct: 154 EKKRVKFKDVAGADEEKQELVEVVEFLKDPRKFAELGARIPKGVLLVGPPGTGKTLLAKA 213
Query: 50 ------------------------GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSV 85
GA RVRDLF+ AK PC++FIDEID+VG +R +
Sbjct: 214 CAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCLIFIDEIDAVGRQRGAGL 273
Query: 86 --LHPYANQTINQLLAEMDGFHQNEGVVVL 113
H QT+NQLL EMDGF NEG++++
Sbjct: 274 GGGHDEREQTLNQLLVEMDGFSANEGIIII 303
>sp|Q6MLS7|FTSH1_BDEBA ATP-dependent zinc metalloprotease FtsH 1 OS=Bdellovibrio
bacteriovorus (strain ATCC 15356 / DSM 50701 / NCIB 9529
/ HD100) GN=ftsH1 PE=3 SV=1
Length = 645
Score = 115 bits (288), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 63/146 (43%), Positives = 84/146 (57%), Gaps = 40/146 (27%)
Query: 8 ITFKDVRGVDEAKQELKEIVEFLKNPEKFSTLGGKLPKGVLL------------------ 49
+TFK+V GVDEAK++L+EIV FLK+P+K++ LGG++PKGVLL
Sbjct: 160 VTFKEVAGVDEAKEDLQEIVSFLKDPKKYTKLGGRIPKGVLLVGSPGTGKTLLARAVAGE 219
Query: 50 --------------------GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSV--LH 87
GA RVRDLF+ K PC++FIDEID+VG R + H
Sbjct: 220 AGVPFFTISGSDFVEMFVGVGASRVRDLFEQGKKNAPCLIFIDEIDAVGRHRGAGMGGGH 279
Query: 88 PYANQTINQLLAEMDGFHQNEGVVVL 113
QT+NQLL EMDGF +EGV+++
Sbjct: 280 DEREQTLNQLLVEMDGFESSEGVIMI 305
>sp|Q1XDF9|FTSH_PORYE ATP-dependent zinc metalloprotease FtsH OS=Porphyra yezoensis
GN=ftsH PE=3 SV=1
Length = 628
Score = 115 bits (288), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 65/147 (44%), Positives = 80/147 (54%), Gaps = 40/147 (27%)
Query: 7 NITFKDVRGVDEAKQELKEIVEFLKNPEKFSTLGGKLPKGVLL----------------- 49
+ F DV GV+EAK+E +E+V FLK PE F+ +G K+PKGVLL
Sbjct: 169 GVVFNDVAGVEEAKEEFQEVVTFLKQPESFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAG 228
Query: 50 ---------------------GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSV--L 86
GA RVRDLFK AKD PC+VFIDEID+VG +R V
Sbjct: 229 EASVPFFSISGSEFVEMFVGVGASRVRDLFKKAKDNAPCIVFIDEIDAVGRQRGTGVGGG 288
Query: 87 HPYANQTINQLLAEMDGFHQNEGVVVL 113
+ QT+NQLL EMDGF N GV+V+
Sbjct: 289 NDEREQTLNQLLTEMDGFEGNTGVIVI 315
>sp|A0L4S0|FTSH_MAGSM ATP-dependent zinc metalloprotease FtsH OS=Magnetococcus sp.
(strain MC-1) GN=ftsH PE=3 SV=1
Length = 673
Score = 115 bits (288), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 62/146 (42%), Positives = 82/146 (56%), Gaps = 40/146 (27%)
Query: 8 ITFKDVRGVDEAKQELKEIVEFLKNPEKFSTLGGKLPKGVLL------------------ 49
+TF+DV G++EAK+EL+E+V+FLK+P KF LGGK+PKGVLL
Sbjct: 151 VTFQDVAGIEEAKEELQEVVQFLKDPHKFQRLGGKIPKGVLLVGPPGTGKTLLARAIAGE 210
Query: 50 --------------------GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSV--LH 87
GA RVRD+F+ K PC++FIDEID+VG R + H
Sbjct: 211 ANVPFFNLSGSDFVEMFVGVGAARVRDMFEQGKKNAPCIIFIDEIDAVGRHRGAGLGGGH 270
Query: 88 PYANQTINQLLAEMDGFHQNEGVVVL 113
QT+NQLL EMDGF EGV+++
Sbjct: 271 DEREQTLNQLLVEMDGFESTEGVIMV 296
>sp|Q6LUJ8|FTSH_PHOPR ATP-dependent zinc metalloprotease FtsH OS=Photobacterium profundum
GN=ftsH PE=3 SV=1
Length = 696
Score = 115 bits (288), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 61/150 (40%), Positives = 84/150 (56%), Gaps = 40/150 (26%)
Query: 4 EEINITFKDVRGVDEAKQELKEIVEFLKNPEKFSTLGGKLPKGVLL-------------- 49
++I TF DV G DEAK+++KE+V++L++P +F LGGK+P G+LL
Sbjct: 172 DQIKTTFADVAGCDEAKEDVKELVDYLRDPSRFQKLGGKIPTGILLVGPPGTGKTLLAKA 231
Query: 50 ------------------------GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSV 85
GA RVRD+F+ AK PC++FIDEID+VG +R V
Sbjct: 232 IAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGV 291
Query: 86 --LHPYANQTINQLLAEMDGFHQNEGVVVL 113
H QT+NQ+L EMDGF NEGV+V+
Sbjct: 292 GGGHDEREQTLNQMLVEMDGFEGNEGVIVI 321
>sp|P51327|FTSH_PORPU ATP-dependent zinc metalloprotease FtsH OS=Porphyra purpurea
GN=ftsH PE=3 SV=1
Length = 628
Score = 115 bits (287), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 65/147 (44%), Positives = 80/147 (54%), Gaps = 40/147 (27%)
Query: 7 NITFKDVRGVDEAKQELKEIVEFLKNPEKFSTLGGKLPKGVLL----------------- 49
+ F DV GV+EAK+E +E+V FLK PE F+ +G K+PKGVLL
Sbjct: 169 GVVFNDVAGVEEAKEEFQEVVTFLKQPESFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAG 228
Query: 50 ---------------------GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSV--L 86
GA RVRDLFK AKD PC+VFIDEID+VG +R V
Sbjct: 229 EAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKDNAPCIVFIDEIDAVGRQRGTGVGGG 288
Query: 87 HPYANQTINQLLAEMDGFHQNEGVVVL 113
+ QT+NQLL EMDGF N GV+V+
Sbjct: 289 NDEREQTLNQLLTEMDGFEGNTGVIVI 315
>sp|Q68XR9|FTSH_RICTY ATP-dependent zinc metalloprotease FtsH OS=Rickettsia typhi (strain
ATCC VR-144 / Wilmington) GN=ftsH PE=3 SV=1
Length = 637
Score = 115 bits (287), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 64/146 (43%), Positives = 81/146 (55%), Gaps = 40/146 (27%)
Query: 8 ITFKDVRGVDEAKQELKEIVEFLKNPEKFSTLGGKLPKGVLL------------------ 49
ITFKDV G+DEAK+EL EIV+FL++P KF LGGK+PKG LL
Sbjct: 152 ITFKDVAGIDEAKEELTEIVDFLRDPSKFQKLGGKIPKGCLLIGPPGTGKTLLAKAIAGE 211
Query: 50 --------------------GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSV--LH 87
GA RVRD+F+ K PC++FIDEID+VG R + +
Sbjct: 212 ANVPFFSISGSDFVEMFVGVGASRVRDMFEQGKRNAPCIIFIDEIDAVGRHRGIGMGGGN 271
Query: 88 PYANQTINQLLAEMDGFHQNEGVVVL 113
QT+NQ+L EMDGF NEGVV++
Sbjct: 272 DEREQTLNQMLVEMDGFEANEGVVII 297
>sp|Q9ZEA2|FTSH_RICPR ATP-dependent zinc metalloprotease FtsH OS=Rickettsia prowazekii
(strain Madrid E) GN=ftsH PE=3 SV=1
Length = 637
Score = 115 bits (287), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 64/146 (43%), Positives = 81/146 (55%), Gaps = 40/146 (27%)
Query: 8 ITFKDVRGVDEAKQELKEIVEFLKNPEKFSTLGGKLPKGVLL------------------ 49
ITFKDV G+DEAK+EL EIV+FL++P KF LGGK+PKG LL
Sbjct: 152 ITFKDVAGIDEAKEELTEIVDFLRDPSKFQKLGGKIPKGCLLIGPPGTGKTLLAKAIAGE 211
Query: 50 --------------------GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSV--LH 87
GA RVRD+F+ K PC++FIDEID+VG R + +
Sbjct: 212 ANVPFFSISGSDFVEMFVGVGASRVRDMFEQGKRNAPCIIFIDEIDAVGRHRGIGMGGGN 271
Query: 88 PYANQTINQLLAEMDGFHQNEGVVVL 113
QT+NQ+L EMDGF NEGVV++
Sbjct: 272 DEREQTLNQMLVEMDGFEANEGVVII 297
>sp|D0LWB8|FTSH_HALO1 ATP-dependent zinc metalloprotease FtsH OS=Haliangium ochraceum
(strain DSM 14365 / JCM 11303 / SMP-2) GN=ftsH PE=3 SV=1
Length = 682
Score = 115 bits (287), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 62/146 (42%), Positives = 83/146 (56%), Gaps = 40/146 (27%)
Query: 8 ITFKDVRGVDEAKQELKEIVEFLKNPEKFSTLGGKLPKGVLL------------------ 49
+TFKDV GV+EAK E++EI+ FLK+P+KF+ LGG++PKGVL+
Sbjct: 189 VTFKDVAGVEEAKDEVEEIIAFLKDPKKFTRLGGRIPKGVLMMGPPGTGKTLLARAIAGE 248
Query: 50 --------------------GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSV--LH 87
GA RVRDLF+ K PC++FIDEID+VG R + H
Sbjct: 249 AGVPFFSISGSDFVEMFVGVGASRVRDLFEQGKKNAPCIIFIDEIDAVGRHRGAGLGGGH 308
Query: 88 PYANQTINQLLAEMDGFHQNEGVVVL 113
QT+NQLL EMDGF N+GV+++
Sbjct: 309 DEREQTLNQLLVEMDGFESNDGVILI 334
>sp|Q92JJ9|FTSH_RICCN ATP-dependent zinc metalloprotease FtsH OS=Rickettsia conorii
(strain ATCC VR-613 / Malish 7) GN=ftsH PE=3 SV=1
Length = 637
Score = 114 bits (286), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 64/146 (43%), Positives = 81/146 (55%), Gaps = 40/146 (27%)
Query: 8 ITFKDVRGVDEAKQELKEIVEFLKNPEKFSTLGGKLPKGVLL------------------ 49
ITFKDV G+DEAK+EL EIV+FL++P KF LGGK+PKG LL
Sbjct: 152 ITFKDVAGIDEAKEELTEIVDFLRDPSKFQKLGGKIPKGCLLIGPPGTGKTLLAKAIAGE 211
Query: 50 --------------------GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSV--LH 87
GA RVRD+F+ K PC++FIDEID+VG R + +
Sbjct: 212 ANVPFFSISGSDFVEMFVGVGASRVRDMFEQGKRNAPCIIFIDEIDAVGRHRGIGMGGGN 271
Query: 88 PYANQTINQLLAEMDGFHQNEGVVVL 113
QT+NQ+L EMDGF NEGVV++
Sbjct: 272 DEREQTLNQMLVEMDGFEANEGVVII 297
>sp|P63343|FTSH_SALTY ATP-dependent zinc metalloprotease FtsH OS=Salmonella typhimurium
(strain LT2 / SGSC1412 / ATCC 700720) GN=ftsH PE=3 SV=1
Length = 644
Score = 114 bits (286), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 61/150 (40%), Positives = 83/150 (55%), Gaps = 40/150 (26%)
Query: 4 EEINITFKDVRGVDEAKQELKEIVEFLKNPEKFSTLGGKLPKGVLL-------------- 49
++I TF DV G DEAK+E+ E+VE+L+ P +F LGGK+PKGVL+
Sbjct: 145 DQIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKA 204
Query: 50 ------------------------GARRVRDLFKAAKDRTPCVVFIDEIDSVGAKRTNSV 85
GA RVRD+F+ AK PC++FIDEID+VG +R +
Sbjct: 205 IAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGL 264
Query: 86 --LHPYANQTINQLLAEMDGFHQNEGVVVL 113
H QT+NQ+L EMDGF NEG++V+
Sbjct: 265 GGGHDEREQTLNQMLVEMDGFEGNEGIIVI 294
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.138 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,005,250
Number of Sequences: 539616
Number of extensions: 1583093
Number of successful extensions: 7781
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 559
Number of HSP's successfully gapped in prelim test: 42
Number of HSP's that attempted gapping in prelim test: 6314
Number of HSP's gapped (non-prelim): 1122
length of query: 113
length of database: 191,569,459
effective HSP length: 81
effective length of query: 32
effective length of database: 147,860,563
effective search space: 4731538016
effective search space used: 4731538016
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)